AlfalfaGEDB | MS.gene66936

M. sativa cultivar XinJiangDaYe / MS.gene66936

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66936.t1	XP_024639431.1	94.4	71	4	0	1	71	205	275	1.00E-25	125.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66936.t1	A0A396HXP9	94.4	71	4	0	1	71	205	275	7.3e-26	125.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052447	MS.gene66936	0.857346	1.74E-62	-1.69E-46
MS.gene05423	MS.gene66936	0.824122	9.58E-54	-1.69E-46
MS.gene055952	MS.gene66936	0.80626	8.97E-50	-1.69E-46
MS.gene059276	MS.gene66936	0.811673	6.22E-51	-1.69E-46
MS.gene059458	MS.gene66936	0.806539	7.83E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACAAAGAGCATCTA+AGG	0.339255	5.4:+49920610	MS.gene66936:CDS
AAGGTTAGTGATGAAATACA+AGG	0.658115	5.4:+49920796	MS.gene66936:CDS
AGGAGTCATAGAGAATCTGG+TGG	0.681121	5.4:+49920821	MS.gene66936:CDS
ATCTGTTGAAAATAGCATAT+TGG	0.366775	5.4:+49920760	MS.gene66936:CDS
CCTCCTCTTCAGCTCTGTCG+AGG	0.622887	5.4:-49920638	None:intergenic
CCTCGACAGAGCTGAAGAGG+AGG	0.608059	5.4:+49920638	MS.gene66936:CDS
GAAAGGAGTCATAGAGAATC+TGG	0.400717	5.4:+49920818	MS.gene66936:CDS
GGAGTCATAGAGAATCTGGT+GGG	0.674277	5.4:+49920822	MS.gene66936:CDS
GTAGCTTAAAGCAATCAACT+CGG	0.659694	5.4:+49920550	None:intergenic
TAACCTCGACAGAGCTGAAG+AGG	0.559410	5.4:+49920635	MS.gene66936:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTCGACAATATAAGG+GGG	-	chr5.4:49920677-49920696	None:intergenic	30.0%
AAGGTTAGTGATGAAATACA+AGG	+	chr5.4:49920796-49920815	MS.gene66936:CDS	30.0%
TAGTGATGAAATACAAGGAA+AGG	+	chr5.4:49920801-49920820	MS.gene66936:CDS	30.0%
TATTGGAAAAGGAGAACAGA+AGG	+	chr5.4:49920777-49920796	MS.gene66936:CDS	35.0%
GAAAGGAGTCATAGAGAATC+TGG	+	chr5.4:49920818-49920837	MS.gene66936:CDS	40.0%
AGGAGTCATAGAGAATCTGG+TGG	+	chr5.4:49920821-49920840	MS.gene66936:CDS	45.0%
GGAGTCATAGAGAATCTGGT+GGG	+	chr5.4:49920822-49920841	MS.gene66936:CDS	45.0%
TAACCTCGACAGAGCTGAAG+AGG	+	chr5.4:49920635-49920654	MS.gene66936:CDS	50.0%
ACAGAGCTGAAGAGGAGGTG+AGG	+	chr5.4:49920643-49920662	MS.gene66936:intron	55.0%
CCTCCTCTTCAGCTCTGTCG+AGG	-	chr5.4:49920641-49920660	None:intergenic	60.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	49920554	49920871	49920554	ID=MS.gene66936
chr5.4	mRNA	49920554	49920871	49920554	ID=MS.gene66936.t1;Parent=MS.gene66936
chr5.4	exon	49920554	49920659	49920554	ID=MS.gene66936.t1.exon1;Parent=MS.gene66936.t1
chr5.4	CDS	49920554	49920659	49920554	ID=cds.MS.gene66936.t1;Parent=MS.gene66936.t1
chr5.4	exon	49920749	49920871	49920749	ID=MS.gene66936.t1.exon2;Parent=MS.gene66936.t1
chr5.4	CDS	49920749	49920871	49920749	ID=cds.MS.gene66936.t1;Parent=MS.gene66936.t1

Gene Sequence	>MS.gene66936 CTTAAAGCAATCAACTCGGAGAGTATTGTCTATTGTTGCTGAATTGATGTCTCTAGAAAAGGACAAAGAGCATCTAAGGATTAACCTCGACAGAGCTGAAGAGGAGGTGAGGATTGCTGACCCCCTTATATTGTCGACTTTTTTCAGTTTTTGGATTATAATGGAATGACTGACTTGGCTTGGTGCAAACTATAGGGCAAACTACTATCTGTTGAAAATAGCATATTGGAAAAGGAGAACAGAAGGTTAGTGATGAAATACAAGGAAAGGAGTCATAGAGAATCTGGTGGGAAACTTACCAATAGTACATCTGCCAAG
Protein sequence	>MS.gene66936.t1 LKAINSESIVYCCUIDVSRKGQRASKDUPRQSURGGQTTICUKUHIGKGEQKVSDEIQGKESURIWWETYQUYICQ