Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66983.t1 | XP_003618953.1 | 92.8 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 3.00E-116 | 427.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66983.t1 | B7FJV5 | 92.8 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 2.1e-116 | 427.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050105 | MS.gene66983 | 0.818923 | 1.52E-52 | -1.69E-46 |
MS.gene050508 | MS.gene66983 | 0.876438 | 1.40E-68 | -1.69E-46 |
MS.gene051368 | MS.gene66983 | 0.835355 | 1.76E-56 | -1.69E-46 |
MS.gene052333 | MS.gene66983 | 0.826897 | 2.11E-54 | -1.69E-46 |
MS.gene052954 | MS.gene66983 | 0.800507 | 1.40E-48 | -1.69E-46 |
MS.gene054537 | MS.gene66983 | 0.80789 | 4.05E-50 | -1.69E-46 |
MS.gene055225 | MS.gene66983 | 0.823366 | 1.44E-53 | -1.69E-46 |
MS.gene055367 | MS.gene66983 | 0.802558 | 5.30E-49 | -1.69E-46 |
MS.gene055701 | MS.gene66983 | 0.823139 | 1.63E-53 | -1.69E-46 |
MS.gene056506 | MS.gene66983 | 0.811998 | 5.29E-51 | -1.69E-46 |
MS.gene057156 | MS.gene66983 | -0.814791 | 1.29E-51 | -1.69E-46 |
MS.gene059710 | MS.gene66983 | 0.866002 | 3.92E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66983.t1 | MTR_6g029250 | 92.797 | 236 | 9 | 1 | 1 | 236 | 1 | 228 | 7.25e-153 | 424 |
MS.gene66983.t1 | MTR_7g085790 | 48.077 | 260 | 98 | 9 | 1 | 233 | 1 | 250 | 1.33e-65 | 204 |
MS.gene66983.t1 | MTR_7g085790 | 44.400 | 250 | 83 | 10 | 1 | 233 | 1 | 211 | 5.72e-54 | 173 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66983.t1 | AT3G03870 | 37.184 | 277 | 117 | 15 | 1 | 233 | 1 | 264 | 2.94e-31 | 116 |
MS.gene66983.t1 | AT5G18130 | 44.186 | 172 | 60 | 8 | 91 | 233 | 114 | 278 | 1.18e-30 | 115 |
MS.gene66983.t1 | AT3G03870 | 32.645 | 242 | 107 | 14 | 1 | 199 | 1 | 229 | 2.88e-14 | 70.1 |
MS.gene66983.t1 | AT5G18130 | 37.857 | 140 | 52 | 7 | 91 | 202 | 114 | 246 | 6.31e-14 | 69.3 |
Find 36 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATAGTGGTTTCAATTTA+TGG | 0.126095 | 6.4:+3763241 | MS.gene66983:CDS |
GTTATGTGAGCTCTTGTTAT+TGG | 0.194388 | 6.4:-3764404 | None:intergenic |
TCTTTCTCAATAATCATTCT+TGG | 0.230298 | 6.4:-3763174 | None:intergenic |
AAGATTAAGGAAAATGAAAT+TGG | 0.238321 | 6.4:+3763096 | MS.gene66983:CDS |
GTTGGTGCTATTTGCACTTT+TGG | 0.279828 | 6.4:+3763282 | MS.gene66983:CDS |
ATTATTGAGAAAGATGATTT+TGG | 0.285258 | 6.4:+3763183 | MS.gene66983:CDS |
TTACCAAGTTTGAGGTCTAA+TGG | 0.382258 | 6.4:-3762985 | None:intergenic |
TAACACCTCAAATGATGTTA+TGG | 0.383015 | 6.4:+3763005 | MS.gene66983:CDS |
GTGGTTTCAATTTATGGAAG+TGG | 0.411257 | 6.4:+3763247 | MS.gene66983:CDS |
GAAGCAATTTCTGTTGTAAG+AGG | 0.414220 | 6.4:+3764377 | MS.gene66983:CDS |
GGTCTAATGGAATTTGTAAA+GGG | 0.426783 | 6.4:-3762972 | None:intergenic |
TTATGGAAGTGGAGTCTTAG+TGG | 0.445021 | 6.4:+3763258 | MS.gene66983:CDS |
TTGAGGTGTTACCAAGTTTG+AGG | 0.452496 | 6.4:-3762993 | None:intergenic |
AGGTCTAATGGAATTTGTAA+AGG | 0.463571 | 6.4:-3762973 | None:intergenic |
TGGGAAGTAGAGGACAATAG+TGG | 0.465059 | 6.4:+3763228 | MS.gene66983:CDS |
TTCAGAAGGATCAGAAGAAT+AGG | 0.469303 | 6.4:+3763361 | MS.gene66983:CDS |
TTGAACCATAACATCATTTG+AGG | 0.471724 | 6.4:-3763010 | None:intergenic |
TCTTTGCTACTACTTGACTT+TGG | 0.472978 | 6.4:-3763138 | None:intergenic |
TGGAGATGGATCTTGATGAA+TGG | 0.483700 | 6.4:+3762812 | None:intergenic |
GAATTTGTAAAGGGACAAGT+TGG | 0.486114 | 6.4:-3762963 | None:intergenic |
GGAGATGGATCTTGATGAAT+GGG | 0.498676 | 6.4:+3762813 | None:intergenic |
ATTCCATTAGACCTCAAACT+TGG | 0.502699 | 6.4:+3762982 | MS.gene66983:CDS |
CAAAGAAGAGGATTCAAGTT+GGG | 0.511674 | 6.4:+3763209 | MS.gene66983:CDS |
TATATTGATTTCAATGAAGA+TGG | 0.511704 | 6.4:+3762856 | MS.gene66983:CDS |
TGTTCTTTGGAAGCCAACAT+AGG | 0.514724 | 6.4:+3763331 | MS.gene66983:CDS |
AAGCAATTTCTGTTGTAAGA+GGG | 0.518875 | 6.4:+3764378 | MS.gene66983:CDS |
GGATTCAAGTTGGGAAGTAG+AGG | 0.539605 | 6.4:+3763218 | MS.gene66983:CDS |
AGCAATTTCTGTTGTAAGAG+GGG | 0.561387 | 6.4:+3764379 | MS.gene66983:CDS |
ATTTCAGAGGATTAAGCAAG+TGG | 0.575069 | 6.4:+3764331 | MS.gene66983:intron |
AAGTGGAGTCTTAGTGGTGT+TGG | 0.575334 | 6.4:+3763264 | MS.gene66983:CDS |
ACAAGAGCTCACATAACAGT+TGG | 0.586253 | 6.4:+3764410 | MS.gene66983:CDS |
ACAAAGAAGAGGATTCAAGT+TGG | 0.588072 | 6.4:+3763208 | MS.gene66983:CDS |
AGAGCTCACATAACAGTTGG+TGG | 0.589518 | 6.4:+3764413 | MS.gene66983:CDS |
TGGGAATCAATCTCTAGTGA+TGG | 0.593054 | 6.4:+3762832 | MS.gene66983:CDS |
ATCAGAAAGTGCTTTAGACA+TGG | 0.600275 | 6.4:+3762906 | MS.gene66983:CDS |
TCAAATCTATGCTGATGACA+AGG | 0.621211 | 6.4:+3763386 | MS.gene66983:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAAATCATATATATTTTTT+TGG | + | chr6.4:3763427-3763446 | MS.gene66983:intron | 10.0% |
!!! | TTTTAGTCATTATATTGTTA+AGG | + | chr6.4:3763676-3763695 | MS.gene66983:intron | 15.0% |
!!! | TTTTGATTCGAAAAATAAAT+TGG | - | chr6.4:3763945-3763964 | None:intergenic | 15.0% |
!! | AAGATTAAGGAAAATGAAAT+TGG | + | chr6.4:3763096-3763115 | MS.gene66983:CDS | 20.0% |
!! | ATCATTTATTCAAGAAATAC+CGG | + | chr6.4:3764044-3764063 | MS.gene66983:intron | 20.0% |
!! | TTCATAAAGTCAATTATAAG+TGG | - | chr6.4:3764014-3764033 | None:intergenic | 20.0% |
!!! | AAATAAATTGGAGTATCAAT+TGG | - | chr6.4:3763933-3763952 | None:intergenic | 20.0% |
!!! | ACAAGTTTTCTTTAAGATTA+AGG | + | chr6.4:3763083-3763102 | MS.gene66983:CDS | 20.0% |
!!! | ATTATTGAGAAAGATGATTT+TGG | + | chr6.4:3763183-3763202 | MS.gene66983:CDS | 20.0% |
!!! | GGATGGAATTTTATTATATT+TGG | + | chr6.4:3764254-3764273 | MS.gene66983:intron | 20.0% |
!!! | TATATTGATTTCAATGAAGA+TGG | + | chr6.4:3762856-3762875 | MS.gene66983:CDS | 20.0% |
!!! | TTTTACTCTATAGTATTTCA+GGG | - | chr6.4:3764214-3764233 | None:intergenic | 20.0% |
!!! | TTTTTACTCTATAGTATTTC+AGG | - | chr6.4:3764215-3764234 | None:intergenic | 20.0% |
! | AAAAAAAGTTTCCTAGGAAA+AGG | + | chr6.4:3762883-3762902 | MS.gene66983:CDS | 25.0% |
! | ACAATAGTGGTTTCAATTTA+TGG | + | chr6.4:3763241-3763260 | MS.gene66983:CDS | 25.0% |
! | CGAATGTCATCAATATTTAT+CGG | - | chr6.4:3763808-3763827 | None:intergenic | 25.0% |
! | TCATTTATTCAAGAAATACC+GGG | + | chr6.4:3764045-3764064 | MS.gene66983:intron | 25.0% |
! | TCTTTCTCAATAATCATTCT+TGG | - | chr6.4:3763177-3763196 | None:intergenic | 25.0% |
! | TTGTATATTGAACTAAACCT+TGG | + | chr6.4:3764303-3764322 | MS.gene66983:intron | 25.0% |
!! | AGAATCTGGTTTAGTATAAA+TGG | + | chr6.4:3763525-3763544 | MS.gene66983:intron | 25.0% |
!! | TCAAGATTTTAAATTGCTCT+TGG | + | chr6.4:3763590-3763609 | MS.gene66983:intron | 25.0% |
!! | TTTTCGAATCAAAACAATCA+GGG | + | chr6.4:3763951-3763970 | MS.gene66983:intron | 25.0% |
!!! | ATTGATGATTCTTTAGAGTT+GGG | + | chr6.4:3763746-3763765 | MS.gene66983:intron | 25.0% |
!!! | GTAAAAAAGTGTTAACTTTG+TGG | + | chr6.4:3764228-3764247 | MS.gene66983:intron | 25.0% |
!!! | TCTATTTGTGTTTTGTTCTT+TGG | + | chr6.4:3763318-3763337 | MS.gene66983:CDS | 25.0% |
!!! | TTTTTCGAATCAAAACAATC+AGG | + | chr6.4:3763950-3763969 | MS.gene66983:intron | 25.0% |
AAAGTCAATTATAAGTGGCA+TGG | - | chr6.4:3764009-3764028 | None:intergenic | 30.0% | |
AAGCAATTTCTGTTGTAAGA+GGG | + | chr6.4:3764378-3764397 | MS.gene66983:CDS | 30.0% | |
ACATAGGAAAAAACTTCAGA+AGG | + | chr6.4:3763347-3763366 | MS.gene66983:CDS | 30.0% | |
AGGTCTAATGGAATTTGTAA+AGG | - | chr6.4:3762976-3762995 | None:intergenic | 30.0% | |
CTTAGTCATTTGATCTTGAT+CGG | + | chr6.4:3763845-3763864 | MS.gene66983:intron | 30.0% | |
GAATCATCAATCAACTAACA+AGG | - | chr6.4:3763737-3763756 | None:intergenic | 30.0% | |
GACAAGGTTAGTAAATTTCT+TGG | + | chr6.4:3763402-3763421 | MS.gene66983:intron | 30.0% | |
GGTCTAATGGAATTTGTAAA+GGG | - | chr6.4:3762975-3762994 | None:intergenic | 30.0% | |
TAACACCTCAAATGATGTTA+TGG | + | chr6.4:3763005-3763024 | MS.gene66983:CDS | 30.0% | |
TTGAACCATAACATCATTTG+AGG | - | chr6.4:3763013-3763032 | None:intergenic | 30.0% | |
!! | GATTGATGATTCTTTAGAGT+TGG | + | chr6.4:3763745-3763764 | MS.gene66983:intron | 30.0% |
!! | TTGATGATTCTTTAGAGTTG+GGG | + | chr6.4:3763747-3763766 | MS.gene66983:intron | 30.0% |
!!! | ACAAGTTGGTTTTGTTTTCT+TGG | - | chr6.4:3762952-3762971 | None:intergenic | 30.0% |
!!! | TCTGAAGTTTTTTCCTATGT+TGG | - | chr6.4:3763347-3763366 | None:intergenic | 30.0% |
AAGAAATACCGGGAAATACT+TGG | + | chr6.4:3764055-3764074 | MS.gene66983:intron | 35.0% | |
ACAAAGAAGAGGATTCAAGT+TGG | + | chr6.4:3763208-3763227 | MS.gene66983:CDS | 35.0% | |
AGAAATACCGGGAAATACTT+GGG | + | chr6.4:3764056-3764075 | MS.gene66983:intron | 35.0% | |
AGCAATTTCTGTTGTAAGAG+GGG | + | chr6.4:3764379-3764398 | MS.gene66983:CDS | 35.0% | |
ATTCCATTAGACCTCAAACT+TGG | + | chr6.4:3762982-3763001 | MS.gene66983:CDS | 35.0% | |
ATTTCAGAGGATTAAGCAAG+TGG | + | chr6.4:3764331-3764350 | MS.gene66983:intron | 35.0% | |
GAAGCAATTTCTGTTGTAAG+AGG | + | chr6.4:3764377-3764396 | MS.gene66983:CDS | 35.0% | |
GAATTTGTAAAGGGACAAGT+TGG | - | chr6.4:3762966-3762985 | None:intergenic | 35.0% | |
GGTGAGAAAAAAAGTTTCCT+AGG | + | chr6.4:3762877-3762896 | MS.gene66983:CDS | 35.0% | |
GTGGTTTCAATTTATGGAAG+TGG | + | chr6.4:3763247-3763266 | MS.gene66983:CDS | 35.0% | |
TACTCTATAGTATTTCAGGG+TGG | - | chr6.4:3764211-3764230 | None:intergenic | 35.0% | |
TCAAATCTATGCTGATGACA+AGG | + | chr6.4:3763386-3763405 | MS.gene66983:CDS | 35.0% | |
TCTTTGCTACTACTTGACTT+TGG | - | chr6.4:3763141-3763160 | None:intergenic | 35.0% | |
TGTCAATGACTGATGTTTGT+CGG | + | chr6.4:3763502-3763521 | MS.gene66983:intron | 35.0% | |
TTCAGAAGGATCAGAAGAAT+AGG | + | chr6.4:3763361-3763380 | MS.gene66983:CDS | 35.0% | |
! | AAAGTGTTAACTTTGTGGCA+AGG | + | chr6.4:3764233-3764252 | MS.gene66983:intron | 35.0% |
! | CAAAGAAGAGGATTCAAGTT+GGG | + | chr6.4:3763209-3763228 | MS.gene66983:CDS | 35.0% |
! | GTTATGTGAGCTCTTGTTAT+TGG | - | chr6.4:3764407-3764426 | None:intergenic | 35.0% |
! | TTACCAAGTTTGAGGTCTAA+TGG | - | chr6.4:3762988-3763007 | None:intergenic | 35.0% |
!! | AAATACTTGGGTGCCATTAA+TGG | + | chr6.4:3764068-3764087 | MS.gene66983:intron | 35.0% |
!! | ATCAGAAAGTGCTTTAGACA+TGG | + | chr6.4:3762906-3762925 | MS.gene66983:CDS | 35.0% |
!! | ATCCTCTGAAATCAAAACCA+AGG | - | chr6.4:3764323-3764342 | None:intergenic | 35.0% |
!! | TGATTTTGGTGACAAAGAAG+AGG | + | chr6.4:3763197-3763216 | MS.gene66983:CDS | 35.0% |
!!! | AACCTTGGTTTTGATTTCAG+AGG | + | chr6.4:3764318-3764337 | MS.gene66983:intron | 35.0% |
!!! | AGTTGGTTTTGTTTTCTTGG+TGG | - | chr6.4:3762949-3762968 | None:intergenic | 35.0% |
!!! | TTTTGTTTTCTTGGTGGTGA+AGG | - | chr6.4:3762943-3762962 | None:intergenic | 35.0% |
ACAAGAGCTCACATAACAGT+TGG | + | chr6.4:3764410-3764429 | MS.gene66983:CDS | 40.0% | |
ACACACACATCCACAATGTT+TGG | - | chr6.4:3764128-3764147 | None:intergenic | 40.0% | |
CACACACATCCACAATGTTT+GGG | - | chr6.4:3764127-3764146 | None:intergenic | 40.0% | |
TGGGAATCAATCTCTAGTGA+TGG | + | chr6.4:3762832-3762851 | MS.gene66983:CDS | 40.0% | |
TGTTAACTTTGTGGCAAGGA+TGG | + | chr6.4:3764237-3764256 | MS.gene66983:intron | 40.0% | |
TTATGGAAGTGGAGTCTTAG+TGG | + | chr6.4:3763258-3763277 | MS.gene66983:CDS | 40.0% | |
TTGTTAAGGCTGCAATCACA+TGG | + | chr6.4:3763690-3763709 | MS.gene66983:intron | 40.0% | |
! | CACTTTCTGATCCTTTTCCT+AGG | - | chr6.4:3762897-3762916 | None:intergenic | 40.0% |
! | TGTTCTTTGGAAGCCAACAT+AGG | + | chr6.4:3763331-3763350 | MS.gene66983:CDS | 40.0% |
! | TTGAGGTGTTACCAAGTTTG+AGG | - | chr6.4:3762996-3763015 | None:intergenic | 40.0% |
!! | TAATGGCATGGTGCCATTAA+TGG | + | chr6.4:3764175-3764194 | MS.gene66983:intron | 40.0% |
!!! | GTTGGTGCTATTTGCACTTT+TGG | + | chr6.4:3763282-3763301 | MS.gene66983:CDS | 40.0% |
AAGTGGAGTCTTAGTGGTGT+TGG | + | chr6.4:3763264-3763283 | MS.gene66983:CDS | 45.0% | |
AATGGCACCCAAGTATTTCC+CGG | - | chr6.4:3764066-3764085 | None:intergenic | 45.0% | |
AGAGCTCACATAACAGTTGG+TGG | + | chr6.4:3764413-3764432 | MS.gene66983:CDS | 45.0% | |
AGTATTTCAGGGTGGCACTT+TGG | - | chr6.4:3764203-3764222 | None:intergenic | 45.0% | |
CATCAATGGCCAGGATGTAA+TGG | - | chr6.4:3764101-3764120 | None:intergenic | 45.0% | |
CATTACATCCTGGCCATTGA+TGG | + | chr6.4:3764099-3764118 | MS.gene66983:intron | 45.0% | |
CTGATGTTTGTCGGAGAATC+TGG | + | chr6.4:3763511-3763530 | MS.gene66983:intron | 45.0% | |
GTTGAATCTCAGTCGATCGT+GGG | + | chr6.4:3763973-3763992 | MS.gene66983:intron | 45.0% | |
TGGGAAGTAGAGGACAATAG+TGG | + | chr6.4:3763228-3763247 | MS.gene66983:CDS | 45.0% | |
! | CAATGTTTGGGTGCCATCAA+TGG | - | chr6.4:3764115-3764134 | None:intergenic | 45.0% |
! | CTGCAATCACATGGCAGTTT+TGG | + | chr6.4:3763699-3763718 | MS.gene66983:intron | 45.0% |
! | TGTGTGTGGTGGAGATCTAA+TGG | + | chr6.4:3764158-3764177 | MS.gene66983:intron | 45.0% |
! | TTGATGGCACCCAAACATTG+TGG | + | chr6.4:3764115-3764134 | MS.gene66983:intron | 45.0% |
!! | CTTTAGAGTTGGGGAGTTTG+TGG | + | chr6.4:3763756-3763775 | MS.gene66983:intron | 45.0% |
!! | GGATTCAAGTTGGGAAGTAG+AGG | + | chr6.4:3763218-3763237 | MS.gene66983:CDS | 45.0% |
!! | TAATGGCACGGTGCCATTAA+TGG | - | chr6.4:3764084-3764103 | None:intergenic | 45.0% |
!! | TGGCACTTTGGTGCCATTAA+TGG | - | chr6.4:3764191-3764210 | None:intergenic | 45.0% |
ATGGCCAGGATGTAATGGCA+CGG | - | chr6.4:3764096-3764115 | None:intergenic | 50.0% | |
GGTTGAATCTCAGTCGATCG+TGG | + | chr6.4:3763972-3763991 | MS.gene66983:intron | 50.0% | |
GTGTGTGATGTGTGTGTGTG+TGG | + | chr6.4:3764144-3764163 | MS.gene66983:intron | 50.0% | |
TGTGATGTGTGTGTGTGTGG+TGG | + | chr6.4:3764147-3764166 | MS.gene66983:intron | 50.0% | |
! | GTGGTGGAGATCTAATGGCA+TGG | + | chr6.4:3764163-3764182 | MS.gene66983:intron | 50.0% |
! | TTTGGGTGCCATCAATGGCC+AGG | - | chr6.4:3764110-3764129 | None:intergenic | 55.0% |
! | GGCACCGTGCCATTACATCC+TGG | + | chr6.4:3764089-3764108 | MS.gene66983:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 3762817 | 3764457 | 3762817 | ID=MS.gene66983 |
chr6.4 | mRNA | 3762817 | 3764457 | 3762817 | ID=MS.gene66983.t1;Parent=MS.gene66983 |
chr6.4 | exon | 3762817 | 3763407 | 3762817 | ID=MS.gene66983.t1.exon1;Parent=MS.gene66983.t1 |
chr6.4 | CDS | 3762817 | 3763407 | 3762817 | ID=cds.MS.gene66983.t1;Parent=MS.gene66983.t1 |
chr6.4 | exon | 3764338 | 3764457 | 3764338 | ID=MS.gene66983.t1.exon2;Parent=MS.gene66983.t1 |
chr6.4 | CDS | 3764338 | 3764457 | 3764338 | ID=cds.MS.gene66983.t1;Parent=MS.gene66983.t1 |
Gene Sequence |
Protein sequence |