AlfalfaGEDB | MS.gene67328

M. sativa cultivar XinJiangDaYe / MS.gene67328

KEGG: -
GO: GO:0003674 GO:0003824
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67328.t1	KEH37182.1	93.9	347	21	0	1	347	1	347	7.40E-188	666.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67328.t1	Q9M9W9	59.8	343	128	2	2	344	22	354	3.6e-122	439.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67328.t1	A0A072V5S1	93.9	347	21	0	1	347	1	347	5.4e-188	666.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049813	MS.gene67328	0.828418	9.09E-55	-1.69E-46
MS.gene052211	MS.gene67328	0.813415	2.59E-51	-1.69E-46
MS.gene054146	MS.gene67328	0.832808	7.65E-56	-1.69E-46
MS.gene059953	MS.gene67328	0.811127	8.18E-51	-1.69E-46
MS.gene059955	MS.gene67328	0.810732	9.96E-51	-1.69E-46
MS.gene060358	MS.gene67328	0.814807	1.28E-51	-1.69E-46
MS.gene061038	MS.gene67328	0.827272	1.71E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67328.t1	MTR_2g435550	93.948	347	21	0	1	347	15	361	0.0	680
MS.gene67328.t1	MTR_2g435550	93.948	347	21	0	1	347	1	347	0.0	679
MS.gene67328.t1	MTR_2g435550	95.312	320	15	0	1	320	15	334	0.0	640
MS.gene67328.t1	MTR_4g120410	74.636	343	86	1	1	343	15	356	0.0	552
MS.gene67328.t1	MTR_7g112490	63.609	338	114	2	16	344	29	366	1.32e-164	465
MS.gene67328.t1	MTR_7g112490	63.609	338	114	2	16	344	47	384	2.45e-164	465
MS.gene67328.t1	MTR_1g083690	64.968	314	110	0	28	341	39	352	1.34e-163	461
MS.gene67328.t1	MTR_7g080170	46.313	339	155	2	28	339	46	384	5.71e-103	312
MS.gene67328.t1	MTR_4g037470	46.230	305	150	4	48	339	67	370	4.70e-99	301
MS.gene67328.t1	MTR_2g090190	47.697	304	146	4	48	339	61	363	1.72e-98	300

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67328.t1	AT3G05640	59.882	339	126	2	2	340	22	350	1.50e-157	446
MS.gene67328.t1	AT3G05640	59.882	339	126	2	2	340	22	350	1.50e-157	446
MS.gene67328.t1	AT3G05640	59.882	339	126	2	2	340	22	350	1.50e-157	446
MS.gene67328.t1	AT5G27930	56.932	339	145	1	1	338	15	353	2.50e-152	433
MS.gene67328.t1	AT5G27930	56.932	339	145	1	1	338	15	353	2.50e-152	433
MS.gene67328.t1	AT3G16800	55.263	342	144	3	1	340	15	349	2.68e-139	399
MS.gene67328.t1	AT3G16800	55.263	342	144	3	1	340	15	349	2.68e-139	399
MS.gene67328.t1	AT3G16800	55.263	342	144	3	1	340	15	349	2.68e-139	399
MS.gene67328.t1	AT5G27930	56.794	287	123	1	1	286	15	301	1.25e-127	369
MS.gene67328.t1	AT3G16800	57.854	261	102	2	81	340	1	254	4.82e-109	319

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Find 60 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAGGAGTATATAGGGTT+TGG	0.387253	2.3:+55397896	MS.gene67328:CDS
AAGATGAACCAGGAGTATAT+AGG	0.462389	2.3:+55397890	MS.gene67328:CDS
AAGGAAAGTTGTGAAAGCAA+TGG	0.649770	2.3:+55395598	MS.gene67328:CDS
AAGTCAGTGGTAAGTTGAAT+AGG	0.407016	2.3:-55397553	None:intergenic
ACAAAGAAAACTCACTACTA+TGG	0.347117	2.3:+55398014	MS.gene67328:CDS
AGATGAACCAGGAGTATATA+GGG	0.437885	2.3:+55397891	MS.gene67328:CDS
AGATGAAGCAGAGCGGATAA+TGG	0.421589	2.3:+55397840	MS.gene67328:intron
AGCGGATAATGGAATCAAAT+GGG	0.550664	2.3:+55397851	MS.gene67328:CDS
AGCTGTAGTTCCACTTTGAA+AGG	0.497677	2.3:-55396652	None:intergenic
AGCTTTGACAGTTGTCAAAC+AGG	0.395302	2.3:+55396671	MS.gene67328:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCTAGCACAATTTAGG+CGG	+	chr2.3:55398454-55398473	MS.gene67328:intron	30.0%
AATAAGAAACAGTTTGATCG+AGG	-	chr2.3:55398638-55398657	None:intergenic	30.0%
AATCCAAATATGCATTGAGT+CGG	-	chr2.3:55398203-55398222	None:intergenic	30.0%
ACAAAGAAAACTCACTACTA+TGG	+	chr2.3:55398014-55398033	MS.gene67328:CDS	30.0%
ACCAAATTCTAGCACAATTT+AGG	+	chr2.3:55398451-55398470	MS.gene67328:intron	30.0%
ATAAGAAACAGTTTGATCGA+GGG	-	chr2.3:55398637-55398656	None:intergenic	30.0%
ATCAGGATTGTCTAATTGTT+TGG	+	chr2.3:55395732-55395751	MS.gene67328:CDS	30.0%
ATGTTGAGTTTCAACTATGA+GGG	+	chr2.3:55397037-55397056	MS.gene67328:intron	30.0%
ATTAGAGTGAGCATATCATT+AGG	+	chr2.3:55398398-55398417	MS.gene67328:intron	30.0%
CAATTGCAAAGCAAAAAAGT+TGG	-	chr2.3:55396483-55396502	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	55395554	55399005	55395554	ID=MS.gene67328
chr2.3	mRNA	55395554	55399005	55395554	ID=MS.gene67328.t1;Parent=MS.gene67328
chr2.3	exon	55395554	55395757	55395554	ID=MS.gene67328.t1.exon1;Parent=MS.gene67328.t1
chr2.3	CDS	55395554	55395757	55395554	ID=cds.MS.gene67328.t1;Parent=MS.gene67328.t1
chr2.3	exon	55396384	55396692	55396384	ID=MS.gene67328.t1.exon2;Parent=MS.gene67328.t1
chr2.3	CDS	55396384	55396692	55396384	ID=cds.MS.gene67328.t1;Parent=MS.gene67328.t1
chr2.3	exon	55397475	55397592	55397475	ID=MS.gene67328.t1.exon3;Parent=MS.gene67328.t1
chr2.3	CDS	55397475	55397592	55397475	ID=cds.MS.gene67328.t1;Parent=MS.gene67328.t1
chr2.3	exon	55397842	55398065	55397842	ID=MS.gene67328.t1.exon4;Parent=MS.gene67328.t1
chr2.3	CDS	55397842	55398065	55397842	ID=cds.MS.gene67328.t1;Parent=MS.gene67328.t1
chr2.3	exon	55398793	55399005	55398793	ID=MS.gene67328.t1.exon5;Parent=MS.gene67328.t1
chr2.3	CDS	55398793	55399005	55398793	ID=cds.MS.gene67328.t1;Parent=MS.gene67328.t1

Gene Sequence

>MS.gene67328

ATGTCTTTGAACAAAGACAAGAGTTATGGAAAGGATGATGATGCAAGGAAAGTTGTGAAAGCAATGGTAAAGGAAGCAAGAAAGAATGAAATGTTGTTGAATTCATCTGGAATTGTAAAGTCCGACAAGTCCAACAATTTTTCCTGTGTGTTCACTAAAAAGGGTCAGAAAGGATTCAATCAGGATTGTCTAATTGTTTGGGAGGTATGCCTAAATATTCAGTTTCCAAATTTCATTGTCTATGATTTTAGCTCTATTTGGAAGAACAGTTTAATTAAGCGCATATAGCATAAACACTTATTGTTAAGTATTTATGTATAGAATATTTTTATAACAGAAGATAAATGAAGCCAAACTATTTTCACATCAGTTATAAGCTGTTTTCATAAGCTATCCTAGAGAGCTTATGAAAATAACTTGAAAACAGCTTATAGAGATGTTATGTCATAAGCTGTTTCAAATTTCAATAACCCTAGCTGTACTAGAGTAGTTTAGTAGCGCCTTTTGAATCAAATTGGCAAGCCCTTTCCGAATCCGAAAGGCGAACAGCCCACTTTGCAAAACAATATCATAAGTACTTATGTGAGTAGATAAGCTCAAATAAACCAATTCAAGCAAACCCTTTCGGATTTCATCACCGCAAAACTAACTTGTACCGCAAAAATTGCCTAATAATTAAAAATTCTATTCAGCTCTTATCTCTGAGCTACGTGTGACTTGGAATTTGCGCAATATAGTATCTTGTTCTGCATAACTGGGACAAAAACCTTGAAAAGTTTGATTAGCATATAAAATGATATTTATATATTCTACATTGTTTCTGATGCTAGGAATTTGGATGCCAAGAGGACATTATTTTGTGTGGAGTTTTCGATGGACATGGACCTTGGGGACATTTTGTATCGAAAAGGGTCCGAAAAATGCTGCCAACTTTTTTGCTTTGCAATTGGCAGGAAAACCTGGCTGAAAAACCACTTGACCTGAGTTTTAAGATGGAAACAGACATGAATCTCCATATGTATGATATATGGAAGCAGTCCTACATAAAGACTTTCGCTGCAATTGATCAGGATCTAAAGCAGCATACTGGAATTGATTCCTTTCAAAGTGGAACTACAGCTTTGACAGTTGTCAAACAGGTTAATCATCCGTAACATCTGATCTTGTATAGTTGTATCTACAAAAATTGATATTTTGATTACTTCTCTGCTGTATCTTAAAATGGTTTGGTAAAGCGTTCGATATATGCAAACCTTATCCTTTGTAGGACGTGTGCACAACTTGAACTTGTAACCAACAAGAAGGGAGTAACCTTATCATTGTGCAAAGTCAATGAGAATAGAGAAAAAATAAATTATTCATTGTTGAGTATGGATTATATTCACTGATAGGTGGACATATGCTTGAGTGTAGCGAGTAGAACGGAAATCTCACTGAGCATAGCTAGGCGAGAATGCCTGCCCACTATCACTGACCTATTAGTATGTTGAGTTTCAACTATGAGGGTAAGGGTTGCGAAGGTAAACTTGTAATTTGAACAATTTTGTAATCCTAAGTATTGCATAACAAAAAAAGCTACATCAGTCATTATGCTTTTGAAGATGTAGACATAATTAGCCGAACGCTATGATTAATTGTTTGTGATCTTGTATGCATTTATTTATCTGTTTCCTTTAGAGTTAGTCGTTCTCGTGTAGATAGTTAAGTATGTTTTCCTTAAGGCTTGTTGCTGTTACTGTTGTTGTATGCATATTTTCCGTAGCTAGTTTTGAATAAATAGTGAATCAATAACATGTTGATTGATGACATTGCTTGGAAAGGCCATACAATTTTTCTGGGGACATTCTCTACTACTACGACCGTTCTCTACTACTTTTTTGCAAATTAAATGCATCCTAAGTTAGTATTATTGATGTTTCAGGGTGAATATCTCATAATAGCAAATGTTGGTGATTCTAGAGCTGTCTTAGCAACCACTTCAGAGAATGGCACACTGACTCCTATTCAACTTACCACTGACTTGAAGCCAAATTTACCAAGTATATATACTCTCTCTATTTTTACACACCCTCACATAAAGATCTGCATTACACAGTTTTCGATCTCAACCATAAAATTTCAGATTAACATCCGAGATAGCTTTAGACTGATTTTGTTATTGTCTAATTTGAATCATCAAAAATCAAATTAATGGCCAAGATAAATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTAACTGTGTCTTTTATTTGAGTGTTGTTCTTGTTAATTTCAGATGAAGCAGAGCGGATAATGGAATCAAATGGGAGAGTATTTTGTATGGAAGATGAACCAGGAGTATATAGGGTTTGGATGCCAAATGGTAAGAGTCCAGGACTAGCAATATCAAGAGCATTTGGTGATTATTGTGTAAAAGACTTTGGACTAATCTCAGTACCAGATGTGACACAAAGAAAACTCACTACTATGGATCAATTTGTCATCTTGGCAACTGATGGGGTATGCATCTTATTTCCTTTCACATTTCAATGACTTAATTTATATTTATCGTTTTTCGAAGGAAAAAAAATGGAAAGAAAAAGTATTTAAAACTTGAAATGAAAATGTTTCGTAAACACAGGAAATTGTTGAAACCGACTCAATGCATATTTGGATTGATGGTGAGTTTGATAGAATCATGTTGTGACATCGTAATGTTAACAAAAGCTACATTTTGGAGCTTCGACAAAATCATTTTCTACCGTGATATTATCAAACTAATTGTGGTTCCAAACATGCACCCGATGAATAGAGTTATACATGCTAGGTTGGTTAAGTGGCAATGAAATGATATTAGAGTGAGCATATCATTAGGTCATGTGATCGTTTAGAGGAAAGAAAATAAACCAAATTCTAGCACAATTTAGGCGGTTCGGCCAATGTGACCTACACATATGGATGATCAAAGACTATTTTTTAATAGACAAGTGTTACTATATTAATTATGTTAGTATTTTCTCCTCAACAGGGTTTGAATTCCGATATTTTAACTCTTTGACCTTTAGTTCAAACGAGTTGAGATGCTCAACCCTCGATCAAACTGTTTCTTATTTCTTTGGGGAGAACAAACATAGTGATTTTTAGTAATTCACGATGATACAATGAGCAATCCTATTCCTCCTATTAACATAATTGAAGGCATCAAAATATGAAATTGTTGATGTAATTTCTGCTTGTTTCATCTCAGGTATGGGATGTTATATCCAACCAAGCAGCTATGAAAATTGTTGCTTCAACACTAAATAGAGAAAAAGCAGCTGATAGGCTAGTAAAATGTGCCACACATGAATGGAAACTTAAGAGAAAAGGCATTGCAATTGATGATATATCAGCTATTTGTCTCTTCTTTCACTCTCCCCCTTCACAACATGTCTCTCAAACCACAAAAGTTGTTGAATAA

Protein sequence

>MS.gene67328.t1

MSLNKDKSYGKDDDARKVVKAMVKEARKNEMLLNSSGIVKSDKSNNFSCVFTKKGQKGFNQDCLIVWEEFGCQEDIILCGVFDGHGPWGHFVSKRVRKMLPTFLLCNWQENLAEKPLDLSFKMETDMNLHMYDIWKQSYIKTFAAIDQDLKQHTGIDSFQSGTTALTVVKQGEYLIIANVGDSRAVLATTSENGTLTPIQLTTDLKPNLPNEAERIMESNGRVFCMEDEPGVYRVWMPNGKSPGLAISRAFGDYCVKDFGLISVPDVTQRKLTTMDQFVILATDGVWDVISNQAAMKIVASTLNREKAADRLVKCATHEWKLKRKGIAIDDISAICLFFHSPPSQHVSQTTKVVE