Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67786.t1 | XP_013458794.1 | 98.9 | 704 | 7 | 1 | 1 | 703 | 1 | 704 | 9.30E-299 | 1035.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67786.t1 | Q9ZVD0 | 64.2 | 545 | 172 | 12 | 171 | 703 | 187 | 720 | 5.7e-172 | 605.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67786.t1 | A0A072UU14 | 98.9 | 704 | 7 | 1 | 1 | 703 | 1 | 704 | 6.7e-299 | 1035.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene67786 | -0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene67786 | -0.84599 | 2.88E-59 | -1.69E-46 |
| MS.gene054473 | MS.gene67786 | -0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene67786 | -0.818061 | 2.39E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene67786 | 0.821731 | 3.45E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67786.t1 | MTR_3g006760 | 98.864 | 704 | 7 | 1 | 1 | 703 | 1 | 704 | 0.0 | 1416 |
| MS.gene67786.t1 | MTR_3g006760 | 98.537 | 547 | 7 | 1 | 1 | 546 | 1 | 547 | 0.0 | 1103 |
| MS.gene67786.t1 | MTR_8g043980 | 76.091 | 573 | 104 | 11 | 143 | 703 | 195 | 746 | 0.0 | 847 |
| MS.gene67786.t1 | MTR_2g084355 | 68.687 | 198 | 36 | 1 | 348 | 545 | 6 | 177 | 2.41e-87 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67786.t1 | AT2G27100 | 61.300 | 646 | 201 | 20 | 85 | 703 | 97 | 720 | 0.0 | 690 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGTAACCTTCGCTTTAA+AGG | 0.144365 | 3.3:+2740540 | None:intergenic |
| GCCTTTAAAGCGAAGGTTAC+TGG | 0.178081 | 3.3:-2740541 | MS.gene67786:CDS |
| CCGTGGCTTAACATCTATTA+AGG | 0.179953 | 3.3:-2741526 | MS.gene67786:CDS |
| ATATCTTCTTGTATCCTTCT+AGG | 0.180061 | 3.3:+2741681 | None:intergenic |
| CGTAAGCTTGACAAGGAAAA+AGG | 0.217997 | 3.3:-2741636 | MS.gene67786:CDS |
| ATCTGTTTCCTCCTCTGAAT+TGG | 0.224196 | 3.3:+2741791 | None:intergenic |
| ATGACAGTAACTTCTTCTTC+TGG | 0.235175 | 3.3:+2739149 | None:intergenic |
| TCTTCATGCCTTGCTCCTTC+TGG | 0.255229 | 3.3:+2741387 | None:intergenic |
| GGATATCAAAACGGAATTTC+TGG | 0.258959 | 3.3:-2744885 | MS.gene67786:intron |
| ATTCATGGTGTAGATTATTA+TGG | 0.272200 | 3.3:-2741453 | MS.gene67786:CDS |
| AAGTTGCGATGCAGATGTTT+AGG | 0.279432 | 3.3:-2740190 | MS.gene67786:CDS |
| CTCCTCTGAATTGGGCTCAC+TGG | 0.296081 | 3.3:+2741800 | None:intergenic |
| TAGCGGCGGTCACGATAGTT+AGG | 0.305964 | 3.3:+2746309 | None:intergenic |
| TCTGTTTCCTCCTCTGAATT+GGG | 0.330335 | 3.3:+2741792 | None:intergenic |
| GAAAAGTATGGTTGGAAGTA+TGG | 0.336039 | 3.3:-2741207 | MS.gene67786:CDS |
| GGTGGAGCGGTGGTGGTGGC+TGG | 0.340592 | 3.3:+2746510 | None:intergenic |
| ACTGGCTTGCTCTGATTTAG+TGG | 0.341815 | 3.3:+2741818 | None:intergenic |
| AGTTGCGATGCAGATGTTTA+GGG | 0.344816 | 3.3:-2740189 | MS.gene67786:CDS |
| ACACACTTATAACATATCTT+TGG | 0.344912 | 3.3:-2741479 | MS.gene67786:CDS |
| ACATGGCAGGGGATCTAATA+AGG | 0.348063 | 3.3:-2741751 | MS.gene67786:CDS |
| TGGAGATCGGTCGTGAGATT+CGG | 0.351300 | 3.3:+2746530 | None:intergenic |
| AACATCTGCATCGCAACTTC+TGG | 0.357957 | 3.3:+2740194 | None:intergenic |
| CTCCTGGATGAATTGCTTAT+AGG | 0.362268 | 3.3:+2742598 | None:intergenic |
| CGCGGCCACCTCGGCCGCCA+CGG | 0.365642 | 3.3:+2746391 | None:intergenic |
| ACATCTATTAAGGGCTTAGA+AGG | 0.370470 | 3.3:-2741516 | MS.gene67786:CDS |
| ACATATCTTTGGCGGATTCA+TGG | 0.376855 | 3.3:-2741468 | MS.gene67786:CDS |
| CTCCGCATCCGTCGGGGATC+AGG | 0.378643 | 3.3:+2740065 | None:intergenic |
| CATAGACTATCGGAGCTTGT+AGG | 0.379735 | 3.3:-2739129 | None:intergenic |
| CCAGGTACAGGCATCAAAAC+TGG | 0.382108 | 3.3:+2740339 | None:intergenic |
| AGGAGGTGGAGCGGTGGTGG+TGG | 0.387041 | 3.3:+2746506 | None:intergenic |
| TTGTTCTGTCGCTCCTATCC+TGG | 0.391046 | 3.3:+2740481 | None:intergenic |
| ATTACTGTAAGTAAATTTGT+TGG | 0.391234 | 3.3:+2742197 | None:intergenic |
| CTTAGAAGGTGTTGAGCTAC+TGG | 0.392056 | 3.3:-2741502 | MS.gene67786:CDS |
| GGCCGAGGTGGCCGCGGTGG+AGG | 0.393766 | 3.3:-2746384 | MS.gene67786:CDS |
| GGGAGGAGGTGGAGCGGTGG+TGG | 0.394202 | 3.3:+2746503 | None:intergenic |
| CGTGGCGGCCGAGGTGGCCG+CGG | 0.394289 | 3.3:-2746390 | MS.gene67786:CDS |
| AAATCGCGACGACGAGTGTT+GGG | 0.397943 | 3.3:+2746453 | None:intergenic |
| CCCCTTCTAGATCTCTTATA+CGG | 0.400477 | 3.3:+2746249 | None:intergenic |
| TATGAACGGGGAGGTGGAAG+GGG | 0.400499 | 3.3:-2744960 | MS.gene67786:CDS |
| GGAGATCGGTCGTGAGATTC+GGG | 0.400805 | 3.3:+2746531 | None:intergenic |
| TCAGGAATGACGATGCGTTC+TGG | 0.403076 | 3.3:-2740140 | MS.gene67786:CDS |
| TGACAGTAACTTCTTCTTCT+GGG | 0.410350 | 3.3:+2739150 | None:intergenic |
| TTTATACCTATTCAGGCCTC+TGG | 0.412686 | 3.3:-2740237 | MS.gene67786:intron |
| GTGTTGGGGTTAGGTGGAGG+TGG | 0.414821 | 3.3:+2746468 | None:intergenic |
| CGACGACGAGTGTTGGGGTT+AGG | 0.417901 | 3.3:+2746459 | None:intergenic |
| GCCTGGATCCCTTGGAAGTA+AGG | 0.418306 | 3.3:-2741299 | MS.gene67786:CDS |
| CACTTATAACATATCTTTGG+CGG | 0.418530 | 3.3:-2741476 | MS.gene67786:CDS |
| AAAATTAGGGATGAAAAGTA+TGG | 0.418748 | 3.3:-2741219 | MS.gene67786:CDS |
| GTTAGTTCCAACACAAGCTC+TGG | 0.419611 | 3.3:+2741111 | None:intergenic |
| CGTGGCTTAACATCTATTAA+GGG | 0.420071 | 3.3:-2741525 | MS.gene67786:CDS |
| GCAGAGAAGGTTGGACAGCC+TGG | 0.420227 | 3.3:-2741316 | MS.gene67786:CDS |
| CGTCCTCACCGTGGCGGCCG+AGG | 0.422279 | 3.3:-2746399 | MS.gene67786:CDS |
| TAAGTACCTCCGCATCCGTC+GGG | 0.423656 | 3.3:+2740058 | None:intergenic |
| AGAAGATATTCATCAGGTTC+AGG | 0.424015 | 3.3:-2741667 | MS.gene67786:CDS |
| CGAGGTGGCCGCGGTGGAGG+TGG | 0.424378 | 3.3:-2746381 | MS.gene67786:CDS |
| GGCGTTCCACCAGGAGCATC+AGG | 0.425251 | 3.3:+2740944 | None:intergenic |
| AGATCGTCGTCGGGAGGAGG+TGG | 0.425711 | 3.3:+2746492 | None:intergenic |
| GAACGGGGAGGTGGAAGGGG+TGG | 0.427644 | 3.3:-2744957 | MS.gene67786:CDS |
| GAATGAAAATGCTCGACGTT+TGG | 0.427952 | 3.3:-2742015 | MS.gene67786:CDS |
| AGCTAAGTCGGGGTCAGAAT+GGG | 0.431013 | 3.3:-2741361 | MS.gene67786:CDS |
| CTTTGCAGTCCTTACTTCCA+AGG | 0.431457 | 3.3:+2741290 | None:intergenic |
| CACCTCCACCGCGGCCACCT+CGG | 0.431991 | 3.3:+2746382 | None:intergenic |
| TCACTTCGGTGGCTATGAAC+GGG | 0.433155 | 3.3:-2744973 | MS.gene67786:CDS |
| TGAAAGATGATCGTGGGAAT+CGG | 0.435042 | 3.3:-2740509 | MS.gene67786:CDS |
| TCCTTACTTCCAAGGGATCC+AGG | 0.438671 | 3.3:+2741298 | None:intergenic |
| TGCGTTCTGGTCCTCACATA+GGG | 0.441667 | 3.3:-2740127 | MS.gene67786:CDS |
| ACCTGAGATTGCTGCATGAC+AGG | 0.446698 | 3.3:+2740923 | None:intergenic |
| CTGTCAGTTCTGAACCTAGA+AGG | 0.448137 | 3.3:-2741695 | MS.gene67786:CDS |
| GGAACTAACATCAAAATTGC+GGG | 0.448450 | 3.3:-2741097 | MS.gene67786:CDS |
| GTATATCATCTTCAAGCTCC+TGG | 0.449728 | 3.3:+2742582 | None:intergenic |
| GGTTTCCCAACTGCCTCTCA+TGG | 0.451422 | 3.3:+2740430 | None:intergenic |
| TCATGGGATGGCGAACTGTC+AGG | 0.456344 | 3.3:+2740447 | None:intergenic |
| GTTGGACAGCCTGGATCCCT+TGG | 0.462251 | 3.3:-2741307 | MS.gene67786:CDS |
| CGGTGGTGGTGGCTGGAGAT+CGG | 0.462892 | 3.3:+2746517 | None:intergenic |
| TTATGCAATTACCTGTCGTT+AGG | 0.463422 | 3.3:+2746213 | None:intergenic |
| GGGAGATCGTCGTCGGGAGG+AGG | 0.464936 | 3.3:+2746489 | None:intergenic |
| CAGCTAAGTCGGGGTCAGAA+TGG | 0.467971 | 3.3:-2741362 | MS.gene67786:CDS |
| TTGATGCCTGTACCTGGTGC+CGG | 0.468596 | 3.3:-2740333 | MS.gene67786:CDS |
| TGATGCCTGTACCTGGTGCC+GGG | 0.471237 | 3.3:-2740332 | MS.gene67786:intron |
| CGACGAGACTGCTGCGGAGG+AGG | 0.471743 | 3.3:+2746282 | None:intergenic |
| CATGAAGAAACAGCTAAGTC+GGG | 0.472186 | 3.3:-2741372 | MS.gene67786:CDS |
| GATAGGAGCGACAGAACAAA+TGG | 0.472382 | 3.3:-2740477 | MS.gene67786:CDS |
| TATGATTTGTGCAGAAATCC+AGG | 0.472977 | 3.3:-2741855 | MS.gene67786:intron |
| CGCCGTATAAGAGATCTAGA+AGG | 0.476081 | 3.3:-2746251 | MS.gene67786:CDS |
| GCCTGTCATGCAGCAATCTC+AGG | 0.476952 | 3.3:-2740924 | MS.gene67786:intron |
| GAACTGACAGGGTGAGCCTT+CGG | 0.478155 | 3.3:+2741708 | None:intergenic |
| CGATTTCTCTGCTGCTCCGA+AGG | 0.478520 | 3.3:-2741724 | MS.gene67786:CDS |
| ATCGCAACTTCTGGTGGAGC+AGG | 0.479254 | 3.3:+2740203 | None:intergenic |
| TCTCACATGCCTAAAACCTT+TGG | 0.481229 | 3.3:+2741410 | None:intergenic |
| GGTGGCTATGAACGGGGAGG+TGG | 0.481462 | 3.3:-2744966 | MS.gene67786:CDS |
| TCCCACGATCATCTTTCAAT+CGG | 0.481981 | 3.3:+2740514 | None:intergenic |
| GTGGATGCAGAGTTTAAACC+TGG | 0.485312 | 3.3:+2741837 | None:intergenic |
| GGCAGATTTCCACATCGATC+TGG | 0.487532 | 3.3:-2744912 | MS.gene67786:CDS |
| TGTAGTGATCCTGATGCTCC+TGG | 0.490637 | 3.3:-2740953 | MS.gene67786:intron |
| GGCGGCCGAGGTGGCCGCGG+TGG | 0.490769 | 3.3:-2746387 | MS.gene67786:CDS |
| GCTATGAACGGGGAGGTGGA+AGG | 0.493281 | 3.3:-2744962 | MS.gene67786:CDS |
| CCATCCCATGAGAGGCAGTT+GGG | 0.495045 | 3.3:-2740435 | MS.gene67786:CDS |
| TCGTGGGAATCGGCGAGACC+AGG | 0.497837 | 3.3:-2740499 | MS.gene67786:CDS |
| CCATCTTCGTATGATCCATC+AGG | 0.498285 | 3.3:-2740158 | MS.gene67786:CDS |
| ATACCACTCCGCATCCTTGT+GGG | 0.498677 | 3.3:+2742376 | None:intergenic |
| GGAGGTGGGAGATCGTCGTC+GGG | 0.499181 | 3.3:+2746483 | None:intergenic |
| TGTTGGGGTTAGGTGGAGGT+GGG | 0.500708 | 3.3:+2746469 | None:intergenic |
| CTCGGCCGCCACGGTGAGGA+CGG | 0.500922 | 3.3:+2746400 | None:intergenic |
| CGAGTGTTGGGGTTAGGTGG+AGG | 0.501237 | 3.3:+2746465 | None:intergenic |
| CATAGCCACCGAAGTGATCA+TGG | 0.502264 | 3.3:+2744979 | None:intergenic |
| GCATGAAGAAACAGCTAAGT+CGG | 0.504054 | 3.3:-2741373 | MS.gene67786:CDS |
| TTTGCAGTCCTTACTTCCAA+GGG | 0.506157 | 3.3:+2741291 | None:intergenic |
| ATGCGTTCTGGTCCTCACAT+AGG | 0.506680 | 3.3:-2740128 | MS.gene67786:CDS |
| GTGGTAAAAGACGACATGGC+AGG | 0.506879 | 3.3:-2741764 | MS.gene67786:CDS |
| GGCATCAAAACTGGAGGAGG+GGG | 0.507533 | 3.3:+2740348 | None:intergenic |
| CAAATCTGCATAACCGCGAT+TGG | 0.508789 | 3.3:+2743527 | None:intergenic |
| TTTAGGCATGTGAGACCAGA+AGG | 0.513433 | 3.3:-2741402 | MS.gene67786:CDS |
| GAAATCGCGACGACGAGTGT+TGG | 0.514577 | 3.3:+2746452 | None:intergenic |
| ATGCAGATGTTTAGGGATCA+AGG | 0.515375 | 3.3:-2740182 | MS.gene67786:CDS |
| ATCTGCATCGCAACTTCTGG+TGG | 0.515886 | 3.3:+2740197 | None:intergenic |
| CTATGAACGGGGAGGTGGAA+GGG | 0.518205 | 3.3:-2744961 | MS.gene67786:CDS |
| TGGAGGTGGGAGATCGTCGT+CGG | 0.518234 | 3.3:+2746482 | None:intergenic |
| GTTATGCAGATTTGCCAAGT+GGG | 0.524038 | 3.3:-2743518 | MS.gene67786:CDS |
| TGCATGACAGGCGTTCCACC+AGG | 0.524219 | 3.3:+2740935 | None:intergenic |
| ATCACTTCGGTGGCTATGAA+CGG | 0.525110 | 3.3:-2744974 | MS.gene67786:CDS |
| GATACAAGAAGATATTCATC+AGG | 0.525306 | 3.3:-2741673 | MS.gene67786:CDS |
| CCCAACTGCCTCTCATGGGA+TGG | 0.526209 | 3.3:+2740435 | None:intergenic |
| TATACTCTGACTTGTACTCT+TGG | 0.527237 | 3.3:+2742429 | None:intergenic |
| ACCAACCCGGCACCAGGTAC+AGG | 0.528126 | 3.3:+2740327 | None:intergenic |
| TGGTAAAAGACGACATGGCA+GGG | 0.530042 | 3.3:-2741763 | MS.gene67786:CDS |
| GAAACAATGTTCGATGCATA+TGG | 0.530275 | 3.3:-2740402 | MS.gene67786:CDS |
| TCTGGTGGAGCAGGAACAAA+GGG | 0.532051 | 3.3:+2740212 | None:intergenic |
| TTAGGGATGAAAAGTATGGT+TGG | 0.532966 | 3.3:-2741215 | MS.gene67786:CDS |
| CTTCTAGGTTCAGAACTGAC+AGG | 0.537567 | 3.3:+2741696 | None:intergenic |
| TAAGGCTCGCAGTGGATCTG+TGG | 0.539326 | 3.3:-2741565 | MS.gene67786:CDS |
| TACCTGTCGTTAGGTCTATG+AGG | 0.541014 | 3.3:+2746222 | None:intergenic |
| AAGCCACGGATAATTACTAC+AGG | 0.543566 | 3.3:+2741540 | None:intergenic |
| ACAGGCATCAAAACTGGAGG+AGG | 0.544938 | 3.3:+2740345 | None:intergenic |
| CCGTCGGGGATCAGGTCTAA+AGG | 0.547560 | 3.3:+2740073 | None:intergenic |
| GAACGCATCGTCATTCCTGA+TGG | 0.548956 | 3.3:+2740143 | None:intergenic |
| CGGTCACGATAGTTAGGGCT+AGG | 0.549799 | 3.3:+2746315 | None:intergenic |
| GACCTGATCCCCGACGGATG+CGG | 0.552652 | 3.3:-2740067 | MS.gene67786:CDS |
| GTTTCCCAACTGCCTCTCAT+GGG | 0.553750 | 3.3:+2740431 | None:intergenic |
| TTTCAATACCCACAAGGATG+CGG | 0.555795 | 3.3:-2742384 | MS.gene67786:CDS |
| CTAGATCTCTTATACGGCGG+AGG | 0.558280 | 3.3:+2746255 | None:intergenic |
| CCTCACCGTGGCGGCCGAGG+TGG | 0.560575 | 3.3:-2746396 | MS.gene67786:CDS |
| CCTGATGGATCATACGAAGA+TGG | 0.561638 | 3.3:+2740158 | None:intergenic |
| TTATACCTATTCAGGCCTCT+GGG | 0.561914 | 3.3:-2740236 | MS.gene67786:intron |
| AGAGCAACCAACCCGGCACC+AGG | 0.562907 | 3.3:+2740321 | None:intergenic |
| AGGACAAGCCTTTAAAGCGA+AGG | 0.563691 | 3.3:-2740548 | MS.gene67786:CDS |
| GCCATCCCATGAGAGGCAGT+TGG | 0.567581 | 3.3:-2740436 | MS.gene67786:CDS |
| TTCTGGTGGAGCAGGAACAA+AGG | 0.568203 | 3.3:+2740211 | None:intergenic |
| CATACCACTCCGCATCCTTG+TGG | 0.569979 | 3.3:+2742375 | None:intergenic |
| ATTTACTTACAGTAATTGAA+AGG | 0.571034 | 3.3:-2742190 | MS.gene67786:intron |
| CGATGTGGAAATCTGCCACC+AGG | 0.571313 | 3.3:+2744918 | None:intergenic |
| CTTCTAGATCTCTTATACGG+CGG | 0.571503 | 3.3:+2746252 | None:intergenic |
| TTATGCAGATTTGCCAAGTG+GGG | 0.573070 | 3.3:-2743517 | MS.gene67786:CDS |
| GTCCTATAAGCAATTCATCC+AGG | 0.574466 | 3.3:-2742600 | MS.gene67786:CDS |
| TGCTGCAGCAGCTGACATGT+TGG | 0.575171 | 3.3:-2741256 | MS.gene67786:CDS |
| GCCGTATAAGAGATCTAGAA+GGG | 0.575206 | 3.3:-2746250 | MS.gene67786:CDS |
| GACAGTAACTTCTTCTTCTG+GGG | 0.578270 | 3.3:+2739151 | None:intergenic |
| ATAAGTACCTCCGCATCCGT+CGG | 0.578460 | 3.3:+2740057 | None:intergenic |
| GGAATCGGCGAGACCAGGAT+AGG | 0.578499 | 3.3:-2740494 | MS.gene67786:CDS |
| AGCCAGTGAGCCCAATTCAG+AGG | 0.578683 | 3.3:-2741802 | MS.gene67786:CDS |
| GGTGGGAGATCGTCGTCGGG+AGG | 0.579636 | 3.3:+2746486 | None:intergenic |
| CATCGAACATTGTTTCATCA+CGG | 0.580490 | 3.3:+2740409 | None:intergenic |
| CGACGAGTGTTGGGGTTAGG+TGG | 0.583016 | 3.3:+2746462 | None:intergenic |
| GGTCGAAATCTCTGTCGTCA+CGG | 0.585246 | 3.3:+2746424 | None:intergenic |
| GAACGACGAGACTGCTGCGG+AGG | 0.585310 | 3.3:+2746279 | None:intergenic |
| AAGTTACTGTCATAGACTAT+CGG | 0.585625 | 3.3:-2739139 | MS.gene67786:CDS |
| GCCGATTGAAAGATGATCGT+GGG | 0.585756 | 3.3:-2740515 | MS.gene67786:CDS |
| AGCGGCGGTCACGATAGTTA+GGG | 0.586078 | 3.3:+2746310 | None:intergenic |
| ATGTGAGACCAGAAGGAGCA+AGG | 0.587740 | 3.3:-2741395 | MS.gene67786:CDS |
| TCTGAGTTGAATGATACAGC+AGG | 0.589557 | 3.3:+2740375 | None:intergenic |
| CCACCTCGGCCGCCACGGTG+AGG | 0.591302 | 3.3:+2746396 | None:intergenic |
| AAGGCTCGCAGTGGATCTGT+GGG | 0.592274 | 3.3:-2741564 | MS.gene67786:CDS |
| AAATGCTCGACGTTTGGCAA+AGG | 0.592998 | 3.3:-2742009 | MS.gene67786:CDS |
| TTTCCACATCGATCTGGAGG+GGG | 0.594827 | 3.3:-2744906 | MS.gene67786:CDS |
| TACCTACGCTCAGCTTCAGA+TGG | 0.594958 | 3.3:+2742557 | None:intergenic |
| GGTCGTGAGATTCGGGAGGG+AGG | 0.595215 | 3.3:+2746538 | None:intergenic |
| CGGGGATCAGGTCTAAAGGT+GGG | 0.597507 | 3.3:+2740077 | None:intergenic |
| GTCGGGAGGAGGTGGAGCGG+TGG | 0.598086 | 3.3:+2746500 | None:intergenic |
| TATGCAGATTTGCCAAGTGG+GGG | 0.600967 | 3.3:-2743516 | MS.gene67786:CDS |
| GGTAAAAGACGACATGGCAG+GGG | 0.602539 | 3.3:-2741762 | MS.gene67786:CDS |
| TTAGTTCCAACACAAGCTCT+GGG | 0.603595 | 3.3:+2741112 | None:intergenic |
| AGATTTCCACATCGATCTGG+AGG | 0.603786 | 3.3:-2744909 | MS.gene67786:CDS |
| TCGGGGATCAGGTCTAAAGG+TGG | 0.610998 | 3.3:+2740076 | None:intergenic |
| TGGAACTAACATCAAAATTG+CGG | 0.612164 | 3.3:-2741098 | MS.gene67786:CDS |
| GGCCGCCACGGTGAGGACGG+CGG | 0.613259 | 3.3:+2746403 | None:intergenic |
| GGCGTTTGATGTCTCTATCA+CGG | 0.614422 | 3.3:+2746346 | None:intergenic |
| CTGATCCCCGACGGATGCGG+AGG | 0.614753 | 3.3:-2740064 | MS.gene67786:intron |
| CAGGCATCAAAACTGGAGGA+GGG | 0.615388 | 3.3:+2740346 | None:intergenic |
| GTCCTCATAGACCTAACGAC+AGG | 0.615608 | 3.3:-2746224 | MS.gene67786:intron |
| GTCGTCGGGAGGAGGTGGAG+CGG | 0.616964 | 3.3:+2746497 | None:intergenic |
| GGTTATGCAGATTTGCCAAG+TGG | 0.618297 | 3.3:-2743519 | MS.gene67786:CDS |
| ATTTCCACATCGATCTGGAG+GGG | 0.621278 | 3.3:-2744907 | MS.gene67786:CDS |
| ACAGTTCGCCATCCCATGAG+AGG | 0.622464 | 3.3:-2740443 | MS.gene67786:CDS |
| TCAGAGGAGGAAACAGATGC+CGG | 0.623419 | 3.3:-2741786 | MS.gene67786:CDS |
| TTTGGCCATGATCACTTCGG+TGG | 0.625230 | 3.3:-2744984 | MS.gene67786:CDS |
| GTGGTGCAGTTATCAAGACT+TGG | 0.626723 | 3.3:-2739177 | MS.gene67786:intron |
| AAAACACCCAGAGCTTGTGT+TGG | 0.626883 | 3.3:-2741118 | MS.gene67786:CDS |
| AGTGATCCTGATGCTCCTGG+TGG | 0.627928 | 3.3:-2740950 | MS.gene67786:CDS |
| GGAGAACGACGAGACTGCTG+CGG | 0.631420 | 3.3:+2746276 | None:intergenic |
| CCTTTAGACCTGATCCCCGA+CGG | 0.633767 | 3.3:-2740073 | MS.gene67786:CDS |
| GATTTCCACATCGATCTGGA+GGG | 0.634289 | 3.3:-2744908 | MS.gene67786:CDS |
| CACTTCGGTGGCTATGAACG+GGG | 0.634430 | 3.3:-2744972 | MS.gene67786:CDS |
| AGGTTTGGCCATGATCACTT+CGG | 0.635013 | 3.3:-2744987 | MS.gene67786:CDS |
| AAGTACCTCCGCATCCGTCG+GGG | 0.635573 | 3.3:+2740059 | None:intergenic |
| GACCGCCGTCCTCACCGTGG+CGG | 0.636148 | 3.3:-2746405 | MS.gene67786:CDS |
| GGCCGATTGAAAGATGATCG+TGG | 0.636197 | 3.3:-2740516 | MS.gene67786:CDS |
| TATGGTTGGAAGTATGGCTG+TGG | 0.637523 | 3.3:-2741201 | MS.gene67786:CDS |
| TTAAAGCGAAGGTTACTGGA+AGG | 0.638659 | 3.3:-2740537 | MS.gene67786:CDS |
| AATCGCGACGACGAGTGTTG+GGG | 0.640572 | 3.3:+2746454 | None:intergenic |
| CCTTAATAGATGTTAAGCCA+CGG | 0.640737 | 3.3:+2741526 | None:intergenic |
| CAGTGAGCCCAATTCAGAGG+AGG | 0.641145 | 3.3:-2741799 | MS.gene67786:CDS |
| CGTTCTGGTCCTCACATAGG+GGG | 0.645123 | 3.3:-2740125 | MS.gene67786:CDS |
| GCCGGTGGTAAAAGACGACA+TGG | 0.645218 | 3.3:-2741768 | MS.gene67786:CDS |
| GCGTTCTGGTCCTCACATAG+GGG | 0.645525 | 3.3:-2740126 | MS.gene67786:CDS |
| CTTGAGACTAGTGATGCCAA+AGG | 0.645562 | 3.3:-2741426 | MS.gene67786:CDS |
| GCAGATCTGGATGCCAATCG+CGG | 0.645963 | 3.3:-2743540 | MS.gene67786:intron |
| CTTGGAAGTAAGGACTGCAA+AGG | 0.649139 | 3.3:-2741289 | MS.gene67786:CDS |
| TGTTGTTCGTAAGCTTGACA+AGG | 0.650753 | 3.3:-2741643 | MS.gene67786:CDS |
| GGGAGGAACAGCAATCATAG+AGG | 0.652456 | 3.3:+2740097 | None:intergenic |
| TTCTAGGTTCAGAACTGACA+GGG | 0.653359 | 3.3:+2741697 | None:intergenic |
| GGCTATGCAGATGATAGACC+TGG | 0.653573 | 3.3:-2744936 | MS.gene67786:CDS |
| AGGCATCAAAACTGGAGGAG+GGG | 0.658058 | 3.3:+2740347 | None:intergenic |
| AATAGTGATAAGGCTCGCAG+TGG | 0.662545 | 3.3:-2741573 | MS.gene67786:CDS |
| AGCTTATTTCAATACCCACA+AGG | 0.664399 | 3.3:-2742390 | MS.gene67786:CDS |
| GGCCCTGTAGTAATTATCCG+TGG | 0.666056 | 3.3:-2741543 | MS.gene67786:CDS |
| GCTGCGGAGGAGGAGAATAG+CGG | 0.667835 | 3.3:+2746292 | None:intergenic |
| TGCCATCTGAAGCTGAGCGT+AGG | 0.669466 | 3.3:-2742559 | MS.gene67786:intron |
| GATCGGTCGTGAGATTCGGG+AGG | 0.670604 | 3.3:+2746534 | None:intergenic |
| ATCGGTCGTGAGATTCGGGA+GGG | 0.670933 | 3.3:+2746535 | None:intergenic |
| ACAATGTTCGATGCATATGG+TGG | 0.677228 | 3.3:-2740399 | MS.gene67786:CDS |
| ATGAAGAAACAGCTAAGTCG+GGG | 0.681698 | 3.3:-2741371 | MS.gene67786:CDS |
| GGATCAGGTCTAAAGGTGGG+AGG | 0.688645 | 3.3:+2740080 | None:intergenic |
| GCGGAGGAGGAGAATAGCGG+CGG | 0.691138 | 3.3:+2746295 | None:intergenic |
| TTCGGTGGCTATGAACGGGG+AGG | 0.691284 | 3.3:-2744969 | MS.gene67786:CDS |
| GCAGGAACAAAGGGTCCCAG+AGG | 0.699153 | 3.3:+2740221 | None:intergenic |
| GGTACAGGCATCAAAACTGG+AGG | 0.702355 | 3.3:+2740342 | None:intergenic |
| GAGGAGGAAACAGATGCCGG+TGG | 0.705310 | 3.3:-2741783 | MS.gene67786:CDS |
| TTCGACCGCCGTCCTCACCG+TGG | 0.713062 | 3.3:-2746408 | MS.gene67786:CDS |
| CCGTATAAGAGATCTAGAAG+GGG | 0.715875 | 3.3:-2746249 | MS.gene67786:CDS |
| CGAAATCTCTGTCGTCACGG+CGG | 0.723095 | 3.3:+2746427 | None:intergenic |
| ATACCCACAAGGATGCGGAG+TGG | 0.729545 | 3.3:-2742379 | MS.gene67786:intron |
| AGCCACGGATAATTACTACA+GGG | 0.753218 | 3.3:+2741541 | None:intergenic |
| TATGCAGATGATAGACCTGG+TGG | 0.763982 | 3.3:-2744933 | MS.gene67786:CDS |
| TGTAGTAACCACCTCCACCG+CGG | 0.784401 | 3.3:+2746373 | None:intergenic |
| AGTTAGGGCTAGGACTACGA+CGG | 0.787338 | 3.3:+2746325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 2739130 | 2746577 | 2739130 | ID=MS.gene67786 |
| chr3.3 | mRNA | 2739130 | 2746577 | 2739130 | ID=MS.gene67786.t1;Parent=MS.gene67786 |
| chr3.3 | exon | 2746225 | 2746577 | 2746225 | ID=MS.gene67786.t1.exon1;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2746225 | 2746577 | 2746225 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2744886 | 2745007 | 2744886 | ID=MS.gene67786.t1.exon2;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2744886 | 2745007 | 2744886 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2743507 | 2743558 | 2743507 | ID=MS.gene67786.t1.exon3;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2743507 | 2743558 | 2743507 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2742560 | 2742634 | 2742560 | ID=MS.gene67786.t1.exon4;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2742560 | 2742634 | 2742560 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2742380 | 2742454 | 2742380 | ID=MS.gene67786.t1.exon5;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2742380 | 2742454 | 2742380 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2742191 | 2742238 | 2742191 | ID=MS.gene67786.t1.exon6;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2742191 | 2742238 | 2742191 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2741972 | 2742040 | 2741972 | ID=MS.gene67786.t1.exon7;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2741972 | 2742040 | 2741972 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2741069 | 2741863 | 2741069 | ID=MS.gene67786.t1.exon8;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2741069 | 2741863 | 2741069 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2740925 | 2740970 | 2740925 | ID=MS.gene67786.t1.exon9;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2740925 | 2740970 | 2740925 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2740333 | 2740568 | 2740333 | ID=MS.gene67786.t1.exon10;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2740333 | 2740568 | 2740333 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2740065 | 2740244 | 2740065 | ID=MS.gene67786.t1.exon11;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2740065 | 2740244 | 2740065 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| chr3.3 | exon | 2739130 | 2739190 | 2739130 | ID=MS.gene67786.t1.exon12;Parent=MS.gene67786.t1 |
| chr3.3 | CDS | 2739130 | 2739190 | 2739130 | ID=cds.MS.gene67786.t1;Parent=MS.gene67786.t1 |
| Gene Sequence |
| Protein sequence |
