Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68090.t1 | XP_013469313.1 | 93.8 | 515 | 26 | 1 | 1 | 509 | 1 | 515 | 2.60E-186 | 661.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68090.t1 | A0A072VP11 | 93.8 | 515 | 26 | 1 | 1 | 509 | 1 | 515 | 1.9e-186 | 661.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene68090 | 0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene68090 | 0.809541 | 1.80E-50 | -1.69E-46 |
| MS.gene050648 | MS.gene68090 | 0.803506 | 3.38E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene68090 | 0.821428 | 4.06E-53 | -1.69E-46 |
| MS.gene051629 | MS.gene68090 | 0.812356 | 4.42E-51 | -1.69E-46 |
| MS.gene054614 | MS.gene68090 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene68090 | 0.812271 | 4.61E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene68090 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene058198 | MS.gene68090 | 0.804878 | 1.75E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene68090 | 0.805202 | 1.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68090.t1 | MTR_1g090853 | 91.456 | 515 | 38 | 1 | 1 | 509 | 1 | 515 | 0.0 | 947 |
| MS.gene68090.t1 | MTR_6g069010 | 50.769 | 65 | 32 | 0 | 21 | 85 | 56 | 120 | 4.80e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68090.t1 | AT3G52170 | 54.400 | 125 | 55 | 1 | 2 | 126 | 1 | 123 | 1.36e-30 | 124 |
| MS.gene68090.t1 | AT3G52170 | 54.400 | 125 | 55 | 1 | 2 | 126 | 1 | 123 | 1.36e-30 | 124 |
| MS.gene68090.t1 | AT5G58210 | 51.786 | 56 | 23 | 1 | 30 | 85 | 48 | 99 | 4.71e-12 | 68.2 |
| MS.gene68090.t1 | AT5G58210 | 51.786 | 56 | 23 | 1 | 30 | 85 | 48 | 99 | 4.71e-12 | 68.2 |
| MS.gene68090.t1 | AT5G58210 | 51.786 | 56 | 23 | 1 | 30 | 85 | 48 | 99 | 4.71e-12 | 68.2 |
| MS.gene68090.t1 | AT5G58210 | 51.786 | 56 | 23 | 1 | 30 | 85 | 48 | 99 | 4.71e-12 | 68.2 |
Find 119 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGATAATTCTAATTTAC+TGG | 0.215505 | 1.1:-66469249 | MS.gene68090:CDS |
| CCTTGTTAGTCAAATCTAAA+TGG | 0.252894 | 1.1:+66469891 | None:intergenic |
| CAGTTGTGTTGATTCTTCTC+TGG | 0.258782 | 1.1:+66468674 | None:intergenic |
| CTCTTGTTCGACATTCAGTT+TGG | 0.300579 | 1.1:+66469481 | None:intergenic |
| GACAATGGGCATGTCGTAAA+TGG | 0.303801 | 1.1:-66469806 | MS.gene68090:CDS |
| CTTCTTTATATCCTTCTCTA+AGG | 0.313422 | 1.1:+66469319 | None:intergenic |
| TCTGGAACTTTCTTGAGTTC+AGG | 0.316178 | 1.1:+66470004 | None:intergenic |
| GTTTCTGATGGGCATTATAC+TGG | 0.323187 | 1.1:-66469737 | MS.gene68090:CDS |
| TCCTGCTAAATTCAACTTGC+AGG | 0.334858 | 1.1:-66470122 | MS.gene68090:CDS |
| AAAGCCATTGTCAATGCCTT+TGG | 0.335893 | 1.1:-66468449 | MS.gene68090:CDS |
| ATGATGCATTCTGTTGTAAA+AGG | 0.367939 | 1.1:-66471247 | MS.gene68090:CDS |
| ATGCACTGACTTGTTCTTTG+TGG | 0.392523 | 1.1:+66469138 | None:intergenic |
| AGTTGTGTTGATTCTTCTCT+GGG | 0.392668 | 1.1:+66468675 | None:intergenic |
| TTATGTGTAAGAGTAATTGA+TGG | 0.394119 | 1.1:+66470217 | None:intergenic |
| GCTGATAAATATAGGCTTGA+TGG | 0.400710 | 1.1:-66468715 | MS.gene68090:CDS |
| AGCAGTGGGTCATTTGTATC+TGG | 0.405639 | 1.1:+66469986 | None:intergenic |
| TGCACTGACTTGTTCTTTGT+GGG | 0.406260 | 1.1:+66469139 | None:intergenic |
| CCTTGTTTGTCATGTCTACC+TGG | 0.406365 | 1.1:+66469669 | None:intergenic |
| AAGCCATTGTCAATGCCTTT+GGG | 0.408921 | 1.1:-66468448 | MS.gene68090:CDS |
| CAAGGAATCTGTTGAAGCTT+CGG | 0.412916 | 1.1:-66469651 | MS.gene68090:CDS |
| GGTTTACTTACCTGCATCTC+AGG | 0.415129 | 1.1:+66469512 | None:intergenic |
| CAATAGAGCGAAAAGAGGAT+TGG | 0.415556 | 1.1:+66468472 | None:intergenic |
| CTCAGGTATAGTAGCTTCAA+TGG | 0.415944 | 1.1:+66469529 | None:intergenic |
| TCTTGTTCGACATTCAGTTT+GGG | 0.422344 | 1.1:+66469482 | None:intergenic |
| AGGAATAGCAATGGAATAGA+AGG | 0.440749 | 1.1:-66469371 | MS.gene68090:CDS |
| TTATACTGAAGCTGAGCATC+AGG | 0.444025 | 1.1:-66469945 | MS.gene68090:CDS |
| AGTTTCCACTGTTTGACTCT+TGG | 0.444341 | 1.1:+66470242 | None:intergenic |
| TTATACTGAAACTGAGCATC+AGG | 0.445424 | 1.1:-66469834 | MS.gene68090:CDS |
| GAAGCTTCTGTTGTTTCTGA+TGG | 0.445970 | 1.1:-66469749 | MS.gene68090:CDS |
| AGCAATGGAATAGAAGGTTC+AGG | 0.448760 | 1.1:-66469365 | MS.gene68090:CDS |
| AACTTGCAATTGAACCCAAC+GGG | 0.449823 | 1.1:+66470068 | None:intergenic |
| CACTTTCCGTATCATGCCTA+GGG | 0.451455 | 1.1:+66469174 | None:intergenic |
| AGCTTGAGATTGTTGACAAA+GGG | 0.454249 | 1.1:-66469595 | MS.gene68090:CDS |
| AATAGAGCGAAAAGAGGATT+GGG | 0.454588 | 1.1:+66468473 | None:intergenic |
| TCCTGCAAGTTGAATTTAGC+AGG | 0.458783 | 1.1:+66470121 | None:intergenic |
| TGAAACATATAACCAAAGTC+AGG | 0.459332 | 1.1:-66469093 | MS.gene68090:intron |
| GATGCACTGAGAAAATGTTC+AGG | 0.461766 | 1.1:+66470043 | None:intergenic |
| GCACTTTCCGTATCATGCCT+AGG | 0.462980 | 1.1:+66469173 | None:intergenic |
| TGCATGAAGCTGATAAATAT+AGG | 0.464650 | 1.1:-66468723 | MS.gene68090:CDS |
| AATCCGAGTCTTTCTCCCTT+CGG | 0.470466 | 1.1:+66471183 | None:intergenic |
| GACATTCAGTTTGGGTTCTG+TGG | 0.471769 | 1.1:+66469490 | None:intergenic |
| GAATCAACACAACTGTAGAT+AGG | 0.471897 | 1.1:-66468666 | MS.gene68090:CDS |
| GTGGCTCTTTCTACACTGTA+AGG | 0.472014 | 1.1:-66470186 | MS.gene68090:CDS |
| AATTCAAGAAAATAGAGTGC+TGG | 0.476605 | 1.1:-66470146 | MS.gene68090:CDS |
| CTCAGTGCATCATCAAATGA+AGG | 0.476801 | 1.1:-66470031 | MS.gene68090:CDS |
| ACATTCAGTTTGGGTTCTGT+GGG | 0.477504 | 1.1:+66469491 | None:intergenic |
| ATCAGAAACAACAGAAGCTT+CGG | 0.480753 | 1.1:+66469751 | None:intergenic |
| TAGAAGGTTCAGGAGAATTG+AGG | 0.482054 | 1.1:-66469355 | MS.gene68090:CDS |
| AGCGACAACAGTGGCTTCAA+TGG | 0.482213 | 1.1:+66469865 | None:intergenic |
| AGCATCAGGTGGTTGACAAT+GGG | 0.489034 | 1.1:-66469820 | MS.gene68090:CDS |
| GAGAAATTTGAGAGTCCCCT+TGG | 0.490832 | 1.1:-66469224 | MS.gene68090:CDS |
| AGAAGGTTCAGGAGAATTGA+GGG | 0.492321 | 1.1:-66469354 | MS.gene68090:CDS |
| AAGCTTCTGTTGTTTCTGAT+GGG | 0.493641 | 1.1:-66469748 | MS.gene68090:CDS |
| AGCTCAAGGTTGTTGACAAA+GGG | 0.499242 | 1.1:-66469709 | MS.gene68090:CDS |
| AGAGAAGGATATAAAGAAGT+TGG | 0.501128 | 1.1:-66469315 | MS.gene68090:CDS |
| TATAGGCTTGATGGTCAACT+TGG | 0.501804 | 1.1:-66468706 | MS.gene68090:CDS |
| ACACTGTAAGGGAGATTGTA+CGG | 0.505294 | 1.1:-66470174 | MS.gene68090:CDS |
| TTTGTCAACAACCTTGAGCT+CGG | 0.510556 | 1.1:+66469712 | None:intergenic |
| GACAAAGGGCATGGCATCGA+TGG | 0.513666 | 1.1:-66469581 | MS.gene68090:CDS |
| TATATTTATCAGCTTCATGC+AGG | 0.514009 | 1.1:+66468725 | None:intergenic |
| TTCCGTATCATGCCTAGGGT+TGG | 0.517395 | 1.1:+66469178 | None:intergenic |
| ACATTTCCATTGAGATCTGT+TGG | 0.519105 | 1.1:-66469395 | MS.gene68090:CDS |
| ATTCAAGAAAATAGAGTGCT+GGG | 0.524858 | 1.1:-66470145 | MS.gene68090:CDS |
| AGCTACTATACCTGAGATGC+AGG | 0.526391 | 1.1:-66469522 | MS.gene68090:CDS |
| TCGGATTCGACGCTCTAAAG+AGG | 0.528962 | 1.1:-66471167 | MS.gene68090:CDS |
| TTCCTACCAACAGATCTCAA+TGG | 0.530928 | 1.1:+66469389 | None:intergenic |
| CTCCAACCCTAGGCATGATA+CGG | 0.531026 | 1.1:-66469180 | MS.gene68090:CDS |
| CTGTTGTAAAAGGTGGTTGG+AGG | 0.534279 | 1.1:-66471237 | MS.gene68090:CDS |
| GTTTCACTGCAGAGAGTCAT+GGG | 0.534713 | 1.1:-66468528 | MS.gene68090:intron |
| GGCAGCTACCACAGTACCAT+TGG | 0.536413 | 1.1:-66469456 | MS.gene68090:CDS |
| CCATTTAGATTTGACTAACA+AGG | 0.536765 | 1.1:-66469891 | MS.gene68090:CDS |
| GGTTTCACTGCAGAGAGTCA+TGG | 0.537898 | 1.1:-66468529 | MS.gene68090:intron |
| AGAGCATTTACTTTAGCCAA+TGG | 0.543934 | 1.1:+66469440 | None:intergenic |
| GAACTTTCTTGAGTTCAGGA+TGG | 0.544040 | 1.1:+66470008 | None:intergenic |
| TCAGGAGAATTGAGGGACTC+TGG | 0.544330 | 1.1:-66469347 | MS.gene68090:CDS |
| CTCTGGTAATTCCTTAGAGA+AGG | 0.546329 | 1.1:-66469330 | MS.gene68090:CDS |
| TCAGGTATAGTAGCTTCAAT+GGG | 0.548881 | 1.1:+66469530 | None:intergenic |
| GAGCATCAGGTGGTTGACAA+TGG | 0.551435 | 1.1:-66469821 | MS.gene68090:CDS |
| AGCATCAGGTGGTTGACGAT+GGG | 0.552915 | 1.1:-66469931 | MS.gene68090:CDS |
| ACGCTCTAAAGAGGAAAGAA+AGG | 0.556254 | 1.1:-66471158 | MS.gene68090:CDS |
| TAAAGGAAATCTCCAACCCT+AGG | 0.557511 | 1.1:-66469190 | MS.gene68090:CDS |
| TGCTTGGCAAGAGCAAATGT+TGG | 0.557759 | 1.1:+66471214 | None:intergenic |
| GCGCAGCATAGATACTAGCC+AGG | 0.560011 | 1.1:-66469687 | MS.gene68090:CDS |
| GAGATTGTTGACAAAGGGCA+TGG | 0.567220 | 1.1:-66469590 | MS.gene68090:CDS |
| CACTGTAAGGGAGATTGTAC+GGG | 0.570068 | 1.1:-66470173 | MS.gene68090:CDS |
| GCTTTCAATAGAGCGAAAAG+AGG | 0.573031 | 1.1:+66468467 | None:intergenic |
| ACTGAATGTCGAACAAGAGT+TGG | 0.573820 | 1.1:-66469477 | MS.gene68090:CDS |
| AGGCTTGATGGTCAACTTGG+TGG | 0.575093 | 1.1:-66468703 | MS.gene68090:CDS |
| TTCCATTGAGATCTGTTGGT+AGG | 0.575819 | 1.1:-66469391 | MS.gene68090:CDS |
| GAGCATCAGGTGGTTGACGA+TGG | 0.577300 | 1.1:-66469932 | MS.gene68090:CDS |
| ATGCACTGAGAAAATGTTCA+GGG | 0.577392 | 1.1:+66470044 | None:intergenic |
| TTTCCCAAAGGCATTGACAA+TGG | 0.578706 | 1.1:+66468445 | None:intergenic |
| GAGCTCAAGGTTGTTGACAA+AGG | 0.582128 | 1.1:-66469710 | MS.gene68090:CDS |
| TTATACTGGAACCGAGCTCA+AGG | 0.590294 | 1.1:-66469723 | MS.gene68090:CDS |
| GCCAAGCAAAATGATTCCGA+AGG | 0.591551 | 1.1:-66471199 | MS.gene68090:CDS |
| TGTTGTTTGTCACATCGACA+TGG | 0.596080 | 1.1:+66469780 | None:intergenic |
| CCAGGTAGACATGACAAACA+AGG | 0.596454 | 1.1:-66469669 | MS.gene68090:CDS |
| TAAAGAGGAAAGAAAGGCAA+TGG | 0.604920 | 1.1:-66471152 | MS.gene68090:CDS |
| CGCGGTAGATGTGATAAACA+AGG | 0.605122 | 1.1:-66469555 | MS.gene68090:CDS |
| TGGCTCTTTCTACACTGTAA+GGG | 0.609781 | 1.1:-66470185 | MS.gene68090:CDS |
| CAACTTGCAATTGAACCCAA+CGG | 0.609972 | 1.1:+66470067 | None:intergenic |
| TCTGTTGGTAGGAATAGCAA+TGG | 0.614572 | 1.1:-66469380 | MS.gene68090:CDS |
| ATTCCGAAGGGAGAAAGACT+CGG | 0.621876 | 1.1:-66471186 | MS.gene68090:CDS |
| TATCAGAAACAGAAAGCAGT+GGG | 0.627200 | 1.1:+66469972 | None:intergenic |
| ACTCTTACACATAAAGAAGT+CGG | 0.628566 | 1.1:-66470208 | MS.gene68090:CDS |
| GAGCTTGAGATTGTTGACAA+AGG | 0.629639 | 1.1:-66469596 | MS.gene68090:CDS |
| GATGGGCATGTCATAGATGT+TGG | 0.629886 | 1.1:-66469914 | MS.gene68090:CDS |
| TACTTTAGCCAATGGTACTG+TGG | 0.635115 | 1.1:+66469448 | None:intergenic |
| TACTGAAGCTGAGCATCAGG+TGG | 0.639952 | 1.1:-66469942 | MS.gene68090:CDS |
| CCAAGCAAAATGATTCCGAA+GGG | 0.647968 | 1.1:-66471198 | MS.gene68090:CDS |
| ATTCTGTTGTAAAAGGTGGT+TGG | 0.651800 | 1.1:-66471240 | MS.gene68090:CDS |
| ATGCATTCTGTTGTAAAAGG+TGG | 0.653181 | 1.1:-66471244 | MS.gene68090:CDS |
| TACTGAAACTGAGCATCAGG+TGG | 0.657285 | 1.1:-66469831 | MS.gene68090:CDS |
| CTTACACATAAAGAAGTCGG+TGG | 0.685561 | 1.1:-66470205 | MS.gene68090:CDS |
| AGGTACCAAGAGTCAAACAG+TGG | 0.692269 | 1.1:-66470247 | MS.gene68090:CDS |
| TTATCAGAAACAGAAAGCAG+TGG | 0.699398 | 1.1:+66469971 | None:intergenic |
| ACTCTCATCAGCGACAACAG+TGG | 0.699689 | 1.1:+66469856 | None:intergenic |
| CAGTAAATTAGAATTATCTG+CGG | 0.719411 | 1.1:+66469250 | None:intergenic |
| GCATGGCATCGATGGCAGCG+CGG | 0.725070 | 1.1:-66469573 | MS.gene68090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATTATAAATACAAATA+AGG | + | chr1.1:66469222-66469241 | None:intergenic | 10.0% |
| !!! | CATAAATTTTAAAAAGTAAA+AGG | + | chr1.1:66468652-66468671 | None:intergenic | 10.0% |
| !!! | TAAATTTTAAAAAGTAAAAG+GGG | + | chr1.1:66468650-66468669 | None:intergenic | 10.0% |
| !! | AAACTAAATTATGGATAAAA+AGG | + | chr1.1:66470614-66470633 | None:intergenic | 15.0% |
| !! | ACAAATTGTTAAAATCAATT+AGG | + | chr1.1:66469318-66469337 | None:intergenic | 15.0% |
| !! | TGAAGTAAAGTTAATTAAAT+TGG | - | chr1.1:66471092-66471111 | MS.gene68090:intron | 15.0% |
| !!! | GATTTTAACAATTTGTTTAA+AGG | - | chr1.1:66469322-66469341 | MS.gene68090:CDS | 15.0% |
| !! | CTTTACTTCATTAAACTAAA+TGG | + | chr1.1:66471082-66471101 | None:intergenic | 20.0% |
| !! | TACACAAATAATAACACAAT+GGG | + | chr1.1:66469155-66469174 | None:intergenic | 20.0% |
| !!! | AAACAATGAAAACTTTGTTT+TGG | - | chr1.1:66468756-66468775 | MS.gene68090:intron | 20.0% |
| !!! | AAGAAATTACTTTTGAATGA+AGG | + | chr1.1:66468557-66468576 | None:intergenic | 20.0% |
| !!! | AATTACTTTCTTTCTAGTTA+TGG | - | chr1.1:66470861-66470880 | MS.gene68090:intron | 20.0% |
| !!! | ATTACTTTCTTTCTAGTTAT+GGG | - | chr1.1:66470862-66470881 | MS.gene68090:intron | 20.0% |
| !!! | GTTTTGTTCTAAAAATTGAT+CGG | + | chr1.1:66469590-66469609 | None:intergenic | 20.0% |
| ! | AAAATTGTACAAGAAAACAG+TGG | - | chr1.1:66468817-66468836 | MS.gene68090:intron | 25.0% |
| ! | AAATTGTACAAGAAAACAGT+GGG | - | chr1.1:66468818-66468837 | MS.gene68090:intron | 25.0% |
| ! | ATAAACGATTCTGTATTGTA+TGG | + | chr1.1:66470824-66470843 | None:intergenic | 25.0% |
| ! | CAGTAAATTAGAATTATCTG+CGG | + | chr1.1:66470430-66470449 | None:intergenic | 25.0% |
| ! | CTACACAAATAATAACACAA+TGG | + | chr1.1:66469156-66469175 | None:intergenic | 25.0% |
| ! | TAAACGATTCTGTATTGTAT+GGG | + | chr1.1:66470823-66470842 | None:intergenic | 25.0% |
| ! | TATCACCACTAAGAAAATTT+GGG | - | chr1.1:66470641-66470660 | MS.gene68090:intron | 25.0% |
| ! | TTAGCCTAAGTTTGATATAT+AGG | - | chr1.1:66468965-66468984 | MS.gene68090:intron | 25.0% |
| ! | TTATATTGCTAACAAACGAA+TGG | - | chr1.1:66468675-66468694 | MS.gene68090:CDS | 25.0% |
| ! | TTATCACCACTAAGAAAATT+TGG | - | chr1.1:66470640-66470659 | MS.gene68090:intron | 25.0% |
| ! | TTATGTGTAAGAGTAATTGA+TGG | + | chr1.1:66469463-66469482 | None:intergenic | 25.0% |
| !! | AATTACTCATGTTTTATGCT+TGG | - | chr1.1:66468582-66468601 | MS.gene68090:intron | 25.0% |
| !!! | ATTACTTTTGAATGAAGGAT+TGG | + | chr1.1:66468552-66468571 | None:intergenic | 25.0% |
| !!! | CTTTAACTTTTTGTTTCCAA+GGG | + | chr1.1:66470472-66470491 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTGTTTCCAAG+GGG | + | chr1.1:66470471-66470490 | None:intergenic | 25.0% |
| AAAACAGTGGGAAAAATACT+GGG | - | chr1.1:66468830-66468849 | MS.gene68090:intron | 30.0% | |
| AAATAATAACACAATGGGAG+GGG | + | chr1.1:66469150-66469169 | None:intergenic | 30.0% | |
| AAATACTGGGAAATGATAAC+AGG | - | chr1.1:66468843-66468862 | MS.gene68090:intron | 30.0% | |
| AATTCAAGAAAATAGAGTGC+TGG | - | chr1.1:66469531-66469550 | MS.gene68090:CDS | 30.0% | |
| ACAAATAATAACACAATGGG+AGG | + | chr1.1:66469152-66469171 | None:intergenic | 30.0% | |
| ACTCTTACACATAAAGAAGT+CGG | - | chr1.1:66469469-66469488 | MS.gene68090:CDS | 30.0% | |
| AGAGAAGGATATAAAGAAGT+TGG | - | chr1.1:66470362-66470381 | MS.gene68090:intron | 30.0% | |
| ATAAATTGATGCAGTTACTG+AGG | + | chr1.1:66470770-66470789 | None:intergenic | 30.0% | |
| ATCACCACTAAGAAAATTTG+GGG | - | chr1.1:66470642-66470661 | MS.gene68090:intron | 30.0% | |
| ATCCAAGAATTCAGCAAAAA+AGG | - | chr1.1:66471179-66471198 | MS.gene68090:CDS | 30.0% | |
| ATGATGCATTCTGTTGTAAA+AGG | - | chr1.1:66468430-66468449 | MS.gene68090:CDS | 30.0% | |
| CAAATAATAACACAATGGGA+GGG | + | chr1.1:66469151-66469170 | None:intergenic | 30.0% | |
| CAAGAAAACACAACACAAAT+CGG | + | chr1.1:66470738-66470757 | None:intergenic | 30.0% | |
| CACTCCTATATATCAAACTT+AGG | + | chr1.1:66468972-66468991 | None:intergenic | 30.0% | |
| CCATTTAGATTTGACTAACA+AGG | - | chr1.1:66469786-66469805 | MS.gene68090:CDS | 30.0% | |
| CCTTGGAAACAAAAAGTTAA+AGG | - | chr1.1:66470470-66470489 | MS.gene68090:intron | 30.0% | |
| CCTTGTTAGTCAAATCTAAA+TGG | + | chr1.1:66469789-66469808 | None:intergenic | 30.0% | |
| CGCAGATAATTCTAATTTAC+TGG | - | chr1.1:66470428-66470447 | MS.gene68090:intron | 30.0% | |
| CTATATAGTTACTTGTCTTC+AGG | - | chr1.1:66469410-66469429 | MS.gene68090:CDS | 30.0% | |
| CTTCTTTATATCCTTCTCTA+AGG | + | chr1.1:66470361-66470380 | None:intergenic | 30.0% | |
| GTGAATACGTTTAGCAAATA+CGG | + | chr1.1:66469066-66469085 | None:intergenic | 30.0% | |
| TATATTTATCAGCTTCATGC+AGG | + | chr1.1:66470955-66470974 | None:intergenic | 30.0% | |
| TCTGAAAATATTCAGACTCA+TGG | - | chr1.1:66470795-66470814 | MS.gene68090:intron | 30.0% | |
| TCTGATAGATAGAAGAAGAT+GGG | - | chr1.1:66468718-66468737 | MS.gene68090:CDS | 30.0% | |
| TGAAACATATAACCAAAGTC+AGG | - | chr1.1:66470584-66470603 | MS.gene68090:intron | 30.0% | |
| TGAATTGAAAGAAGCAATAC+TGG | - | chr1.1:66468935-66468954 | MS.gene68090:intron | 30.0% | |
| TGCATGAAGCTGATAAATAT+AGG | - | chr1.1:66470954-66470973 | MS.gene68090:intron | 30.0% | |
| TTCTGACAAAAATTTCCCAA+AGG | + | chr1.1:66471247-66471266 | None:intergenic | 30.0% | |
| TTCTGATAGATAGAAGAAGA+TGG | - | chr1.1:66468717-66468736 | MS.gene68090:CDS | 30.0% | |
| ! | ATTCAAGAAAATAGAGTGCT+GGG | - | chr1.1:66469532-66469551 | MS.gene68090:CDS | 30.0% |
| ! | GGAAGTAGTTTATATGCTTT+TGG | - | chr1.1:66470664-66470683 | MS.gene68090:intron | 30.0% |
| !! | CCTTTAACTTTTTGTTTCCA+AGG | + | chr1.1:66470473-66470492 | None:intergenic | 30.0% |
| !!! | ATTTTTAGAACAAAACCCGT+TGG | - | chr1.1:66469594-66469613 | MS.gene68090:CDS | 30.0% |
| !!! | TTCCTTTTTTGCTGAATTCT+TGG | + | chr1.1:66471184-66471203 | None:intergenic | 30.0% |
| !!! | TTTTTAGAACAAAACCCGTT+GGG | - | chr1.1:66469595-66469614 | MS.gene68090:CDS | 30.0% |
| AATAGAGCGAAAAGAGGATT+GGG | + | chr1.1:66471207-66471226 | None:intergenic | 35.0% | |
| ACATTTCCATTGAGATCTGT+TGG | - | chr1.1:66470282-66470301 | MS.gene68090:intron | 35.0% | |
| AGAATGTAGATCTGTGTGAA+TGG | - | chr1.1:66469176-66469195 | MS.gene68090:CDS | 35.0% | |
| AGCTAACTTGACCTTTCTAA+TGG | - | chr1.1:66471127-66471146 | MS.gene68090:intron | 35.0% | |
| AGCTTGAGATTGTTGACAAA+GGG | - | chr1.1:66470082-66470101 | MS.gene68090:CDS | 35.0% | |
| AGGAATAGCAATGGAATAGA+AGG | - | chr1.1:66470306-66470325 | MS.gene68090:intron | 35.0% | |
| ATCAGAAACAACAGAAGCTT+CGG | + | chr1.1:66469929-66469948 | None:intergenic | 35.0% | |
| ATGCACTGAGAAAATGTTCA+GGG | + | chr1.1:66469636-66469655 | None:intergenic | 35.0% | |
| ATGCATTCTGTTGTAAAAGG+TGG | - | chr1.1:66468433-66468452 | MS.gene68090:CDS | 35.0% | |
| ATTCTGTTGTAAAAGGTGGT+TGG | - | chr1.1:66468437-66468456 | MS.gene68090:CDS | 35.0% | |
| GAAAACAGTGGGAAAAATAC+TGG | - | chr1.1:66468829-66468848 | MS.gene68090:intron | 35.0% | |
| GAATCAACACAACTGTAGAT+AGG | - | chr1.1:66471011-66471030 | MS.gene68090:intron | 35.0% | |
| GCTGATAAATATAGGCTTGA+TGG | - | chr1.1:66470962-66470981 | MS.gene68090:intron | 35.0% | |
| TAAAAAGGCTAACCTGACTT+TGG | + | chr1.1:66470599-66470618 | None:intergenic | 35.0% | |
| TAAAGAGGAAAGAAAGGCAA+TGG | - | chr1.1:66468525-66468544 | MS.gene68090:intron | 35.0% | |
| TATCAGAAACAGAAAGCAGT+GGG | + | chr1.1:66469708-66469727 | None:intergenic | 35.0% | |
| TCACCACTAAGAAAATTTGG+GGG | - | chr1.1:66470643-66470662 | MS.gene68090:intron | 35.0% | |
| TCAGGTATAGTAGCTTCAAT+GGG | + | chr1.1:66470150-66470169 | None:intergenic | 35.0% | |
| TCTTGTTCGACATTCAGTTT+GGG | + | chr1.1:66470198-66470217 | None:intergenic | 35.0% | |
| TTATACTGAAACTGAGCATC+AGG | - | chr1.1:66469843-66469862 | MS.gene68090:CDS | 35.0% | |
| TTATCAGAAACAGAAAGCAG+TGG | + | chr1.1:66469709-66469728 | None:intergenic | 35.0% | |
| ! | AGAGCATTTACTTTAGCCAA+TGG | + | chr1.1:66470240-66470259 | None:intergenic | 35.0% |
| !! | AAGCTTCTGTTGTTTCTGAT+GGG | - | chr1.1:66469929-66469948 | MS.gene68090:CDS | 35.0% |
| !! | ACTTTCTTTCTAGTTATGGG+AGG | - | chr1.1:66470865-66470884 | MS.gene68090:intron | 35.0% |
| !! | AGTTGTGTTGATTCTTCTCT+GGG | + | chr1.1:66471005-66471024 | None:intergenic | 35.0% |
| AAACGTGCCTGACTTATTGT+AGG | - | chr1.1:66468879-66468898 | MS.gene68090:intron | 40.0% | |
| AAAGCCATTGTCAATGCCTT+TGG | - | chr1.1:66471228-66471247 | MS.gene68090:CDS | 40.0% | |
| AACGTGCCTGACTTATTGTA+GGG | - | chr1.1:66468880-66468899 | MS.gene68090:intron | 40.0% | |
| AACTTGCAATTGAACCCAAC+GGG | + | chr1.1:66469612-66469631 | None:intergenic | 40.0% | |
| AAGCCATTGTCAATGCCTTT+GGG | - | chr1.1:66471229-66471248 | MS.gene68090:CDS | 40.0% | |
| AATACCCCCTACAATAAGTC+AGG | + | chr1.1:66468889-66468908 | None:intergenic | 40.0% | |
| ACACTGTAAGGGAGATTGTA+CGG | - | chr1.1:66469503-66469522 | MS.gene68090:CDS | 40.0% | |
| ACTGAATGTCGAACAAGAGT+TGG | - | chr1.1:66470200-66470219 | MS.gene68090:CDS | 40.0% | |
| AGAAGGTTCAGGAGAATTGA+GGG | - | chr1.1:66470323-66470342 | MS.gene68090:intron | 40.0% | |
| AGCAATGGAATAGAAGGTTC+AGG | - | chr1.1:66470312-66470331 | MS.gene68090:intron | 40.0% | |
| AGCTCAAGGTTGTTGACAAA+GGG | - | chr1.1:66469968-66469987 | MS.gene68090:CDS | 40.0% | |
| AGTTTCCACTGTTTGACTCT+TGG | + | chr1.1:66469438-66469457 | None:intergenic | 40.0% | |
| CAACTTGCAATTGAACCCAA+CGG | + | chr1.1:66469613-66469632 | None:intergenic | 40.0% | |
| CAAGGAATCTGTTGAAGCTT+CGG | - | chr1.1:66470026-66470045 | MS.gene68090:CDS | 40.0% | |
| CAATAGAGCGAAAAGAGGAT+TGG | + | chr1.1:66471208-66471227 | None:intergenic | 40.0% | |
| CCAAGCAAAATGATTCCGAA+GGG | - | chr1.1:66468479-66468498 | MS.gene68090:CDS | 40.0% | |
| CTCAGGTATAGTAGCTTCAA+TGG | + | chr1.1:66470151-66470170 | None:intergenic | 40.0% | |
| CTCAGTGCATCATCAAATGA+AGG | - | chr1.1:66469646-66469665 | MS.gene68090:CDS | 40.0% | |
| CTCTGGTAATTCCTTAGAGA+AGG | - | chr1.1:66470347-66470366 | MS.gene68090:intron | 40.0% | |
| CTCTTGTTCGACATTCAGTT+TGG | + | chr1.1:66470199-66470218 | None:intergenic | 40.0% | |
| CTGCAGTGAAACCATTAGAA+AGG | + | chr1.1:66471141-66471160 | None:intergenic | 40.0% | |
| CTTACACATAAAGAAGTCGG+TGG | - | chr1.1:66469472-66469491 | MS.gene68090:CDS | 40.0% | |
| GAACTTTCTTGAGTTCAGGA+TGG | + | chr1.1:66469672-66469691 | None:intergenic | 40.0% | |
| GAGCTTGAGATTGTTGACAA+AGG | - | chr1.1:66470081-66470100 | MS.gene68090:CDS | 40.0% | |
| GATAGATAGAAGAAGATGGG+AGG | - | chr1.1:66468721-66468740 | MS.gene68090:CDS | 40.0% | |
| GATGCACTGAGAAAATGTTC+AGG | + | chr1.1:66469637-66469656 | None:intergenic | 40.0% | |
| GCTTTCAATAGAGCGAAAAG+AGG | + | chr1.1:66471213-66471232 | None:intergenic | 40.0% | |
| TAAAGGAAATCTCCAACCCT+AGG | - | chr1.1:66470487-66470506 | MS.gene68090:intron | 40.0% | |
| TACTTTAGCCAATGGTACTG+TGG | + | chr1.1:66470232-66470251 | None:intergenic | 40.0% | |
| TAGAAGGTTCAGGAGAATTG+AGG | - | chr1.1:66470322-66470341 | MS.gene68090:intron | 40.0% | |
| TCCTGCTAAATTCAACTTGC+AGG | - | chr1.1:66469555-66469574 | MS.gene68090:CDS | 40.0% | |
| TGGCTCTTTCTACACTGTAA+GGG | - | chr1.1:66469492-66469511 | MS.gene68090:CDS | 40.0% | |
| TTATACTGAAGCTGAGCATC+AGG | - | chr1.1:66469732-66469751 | MS.gene68090:CDS | 40.0% | |
| TTCCATTGAGATCTGTTGGT+AGG | - | chr1.1:66470286-66470305 | MS.gene68090:intron | 40.0% | |
| TTCCTACCAACAGATCTCAA+TGG | + | chr1.1:66470291-66470310 | None:intergenic | 40.0% | |
| TTTGTCAACAACCTTGAGCT+CGG | + | chr1.1:66469968-66469987 | None:intergenic | 40.0% | |
| ! | ACATTCAGTTTGGGTTCTGT+GGG | + | chr1.1:66470189-66470208 | None:intergenic | 40.0% |
| ! | CTTCCCCCAAATTTTCTTAG+TGG | + | chr1.1:66470649-66470668 | None:intergenic | 40.0% |
| ! | GTTTCTGATGGGCATTATAC+TGG | - | chr1.1:66469940-66469959 | MS.gene68090:CDS | 40.0% |
| ! | TATAGGCTTGATGGTCAACT+TGG | - | chr1.1:66470971-66470990 | MS.gene68090:intron | 40.0% |
| ! | TCCTGCAAGTTGAATTTAGC+AGG | + | chr1.1:66469559-66469578 | None:intergenic | 40.0% |
| ! | TCTGGAACTTTCTTGAGTTC+AGG | + | chr1.1:66469676-66469695 | None:intergenic | 40.0% |
| ! | TCTGTTGGTAGGAATAGCAA+TGG | - | chr1.1:66470297-66470316 | MS.gene68090:intron | 40.0% |
| ! | TGTTGTTTGTCACATCGACA+TGG | + | chr1.1:66469900-66469919 | None:intergenic | 40.0% |
| !! | ACGCTCTAAAGAGGAAAGAA+AGG | - | chr1.1:66468519-66468538 | MS.gene68090:CDS | 40.0% |
| !! | ATGCACTGACTTGTTCTTTG+TGG | + | chr1.1:66470542-66470561 | None:intergenic | 40.0% |
| !! | CAGTTGTGTTGATTCTTCTC+TGG | + | chr1.1:66471006-66471025 | None:intergenic | 40.0% |
| !! | GAAGCTTCTGTTGTTTCTGA+TGG | - | chr1.1:66469928-66469947 | MS.gene68090:CDS | 40.0% |
| !! | TGCACTGACTTGTTCTTTGT+GGG | + | chr1.1:66470541-66470560 | None:intergenic | 40.0% |
| !! | TTTCCCAAAGGCATTGACAA+TGG | + | chr1.1:66471235-66471254 | None:intergenic | 40.0% |
| AATCCGAGTCTTTCTCCCTT+CGG | + | chr1.1:66468497-66468516 | None:intergenic | 45.0% | |
| ACGTGCCTGACTTATTGTAG+GGG | - | chr1.1:66468881-66468900 | MS.gene68090:intron | 45.0% | |
| AGATAGAAGAAGATGGGAGG+CGG | - | chr1.1:66468724-66468743 | MS.gene68090:CDS | 45.0% | |
| AGCAGTGGGTCATTTGTATC+TGG | + | chr1.1:66469694-66469713 | None:intergenic | 45.0% | |
| AGCATCAGGTGGTTGACAAT+GGG | - | chr1.1:66469857-66469876 | MS.gene68090:CDS | 45.0% | |
| AGCTACTATACCTGAGATGC+AGG | - | chr1.1:66470155-66470174 | MS.gene68090:CDS | 45.0% | |
| AGGTACCAAGAGTCAAACAG+TGG | - | chr1.1:66469430-66469449 | MS.gene68090:CDS | 45.0% | |
| ATTCCGAAGGGAGAAAGACT+CGG | - | chr1.1:66468491-66468510 | MS.gene68090:CDS | 45.0% | |
| CACTGTAAGGGAGATTGTAC+GGG | - | chr1.1:66469504-66469523 | MS.gene68090:CDS | 45.0% | |
| CACTTTCCGTATCATGCCTA+GGG | + | chr1.1:66470506-66470525 | None:intergenic | 45.0% | |
| CCAGGTAGACATGACAAACA+AGG | - | chr1.1:66470008-66470027 | MS.gene68090:CDS | 45.0% | |
| CGCGGTAGATGTGATAAACA+AGG | - | chr1.1:66470122-66470141 | MS.gene68090:CDS | 45.0% | |
| CTGTTGTAAAAGGTGGTTGG+AGG | - | chr1.1:66468440-66468459 | MS.gene68090:CDS | 45.0% | |
| GACAATGGGCATGTCGTAAA+TGG | - | chr1.1:66469871-66469890 | MS.gene68090:CDS | 45.0% | |
| GAGAAATTTGAGAGTCCCCT+TGG | - | chr1.1:66470453-66470472 | MS.gene68090:intron | 45.0% | |
| GAGATTGTTGACAAAGGGCA+TGG | - | chr1.1:66470087-66470106 | MS.gene68090:CDS | 45.0% | |
| GAGCTCAAGGTTGTTGACAA+AGG | - | chr1.1:66469967-66469986 | MS.gene68090:CDS | 45.0% | |
| GATGCAGTTACTGAGGTATG+AGG | + | chr1.1:66470763-66470782 | None:intergenic | 45.0% | |
| GATGGGCATGTCATAGATGT+TGG | - | chr1.1:66469763-66469782 | MS.gene68090:CDS | 45.0% | |
| GCCAAGCAAAATGATTCCGA+AGG | - | chr1.1:66468478-66468497 | MS.gene68090:CDS | 45.0% | |
| GGTTTACTTACCTGCATCTC+AGG | + | chr1.1:66470168-66470187 | None:intergenic | 45.0% | |
| GTGGCTCTTTCTACACTGTA+AGG | - | chr1.1:66469491-66469510 | MS.gene68090:CDS | 45.0% | |
| GTTTCACTGCAGAGAGTCAT+GGG | - | chr1.1:66471149-66471168 | MS.gene68090:CDS | 45.0% | |
| TACTGAAACTGAGCATCAGG+TGG | - | chr1.1:66469846-66469865 | MS.gene68090:CDS | 45.0% | |
| TGCTTGGCAAGAGCAAATGT+TGG | + | chr1.1:66468466-66468485 | None:intergenic | 45.0% | |
| TTATACTGGAACCGAGCTCA+AGG | - | chr1.1:66469954-66469973 | MS.gene68090:CDS | 45.0% | |
| ! | CCCTTCGGAATCATTTTGCT+TGG | + | chr1.1:66468482-66468501 | None:intergenic | 45.0% |
| ! | CCTTGTTTGTCATGTCTACC+TGG | + | chr1.1:66470011-66470030 | None:intergenic | 45.0% |
| ! | GACATTCAGTTTGGGTTCTG+TGG | + | chr1.1:66470190-66470209 | None:intergenic | 45.0% |
| !!! | ATAAATTTTAAAAAGTAAAA+GGG | + | chr1.1:66468651-66468670 | None:intergenic | 5.0% |
| !!! | TAATTTTAAAAACTAAATTA+TGG | + | chr1.1:66470623-66470642 | None:intergenic | 5.0% |
| ACTCTCATCAGCGACAACAG+TGG | + | chr1.1:66469824-66469843 | None:intergenic | 50.0% | |
| AGCATCAGGTGGTTGACGAT+GGG | - | chr1.1:66469746-66469765 | MS.gene68090:CDS | 50.0% | |
| AGCGACAACAGTGGCTTCAA+TGG | + | chr1.1:66469815-66469834 | None:intergenic | 50.0% | |
| CGTGCCTGACTTATTGTAGG+GGG | - | chr1.1:66468882-66468901 | MS.gene68090:intron | 50.0% | |
| CTCCAACCCTAGGCATGATA+CGG | - | chr1.1:66470497-66470516 | MS.gene68090:intron | 50.0% | |
| GAGCATCAGGTGGTTGACAA+TGG | - | chr1.1:66469856-66469875 | MS.gene68090:CDS | 50.0% | |
| GCACTTTCCGTATCATGCCT+AGG | + | chr1.1:66470507-66470526 | None:intergenic | 50.0% | |
| GGTTTCACTGCAGAGAGTCA+TGG | - | chr1.1:66471148-66471167 | MS.gene68090:CDS | 50.0% | |
| TACTGAAGCTGAGCATCAGG+TGG | - | chr1.1:66469735-66469754 | MS.gene68090:CDS | 50.0% | |
| TCAGGAGAATTGAGGGACTC+TGG | - | chr1.1:66470330-66470349 | MS.gene68090:intron | 50.0% | |
| TTCCGTATCATGCCTAGGGT+TGG | + | chr1.1:66470502-66470521 | None:intergenic | 50.0% | |
| ! | AGGCTTGATGGTCAACTTGG+TGG | - | chr1.1:66470974-66470993 | MS.gene68090:intron | 50.0% |
| !! | TCGGATTCGACGCTCTAAAG+AGG | - | chr1.1:66468510-66468529 | MS.gene68090:CDS | 50.0% |
| GAGCATCAGGTGGTTGACGA+TGG | - | chr1.1:66469745-66469764 | MS.gene68090:CDS | 55.0% | |
| GCGCAGCATAGATACTAGCC+AGG | - | chr1.1:66469990-66470009 | MS.gene68090:CDS | 55.0% | |
| GGCAGCTACCACAGTACCAT+TGG | - | chr1.1:66470221-66470240 | MS.gene68090:CDS | 55.0% | |
| ! | GACAAAGGGCATGGCATCGA+TGG | - | chr1.1:66470096-66470115 | MS.gene68090:CDS | 55.0% |
| !! | GCATGGCATCGATGGCAGCG+CGG | - | chr1.1:66470104-66470123 | MS.gene68090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 66468430 | 66471269 | 66468430 | ID=MS.gene68090 |
| chr1.1 | mRNA | 66468430 | 66471269 | 66468430 | ID=MS.gene68090.t1;Parent=MS.gene68090 |
| chr1.1 | exon | 66471133 | 66471269 | 66471133 | ID=MS.gene68090.t1.exon1;Parent=MS.gene68090.t1 |
| chr1.1 | CDS | 66471133 | 66471269 | 66471133 | ID=cds.MS.gene68090.t1;Parent=MS.gene68090.t1 |
| chr1.1 | exon | 66469094 | 66470267 | 66469094 | ID=MS.gene68090.t1.exon2;Parent=MS.gene68090.t1 |
| chr1.1 | CDS | 66469094 | 66470267 | 66469094 | ID=cds.MS.gene68090.t1;Parent=MS.gene68090.t1 |
| chr1.1 | exon | 66468658 | 66468767 | 66468658 | ID=MS.gene68090.t1.exon3;Parent=MS.gene68090.t1 |
| chr1.1 | CDS | 66468658 | 66468767 | 66468658 | ID=cds.MS.gene68090.t1;Parent=MS.gene68090.t1 |
| chr1.1 | exon | 66468430 | 66468538 | 66468430 | ID=MS.gene68090.t1.exon4;Parent=MS.gene68090.t1 |
| chr1.1 | CDS | 66468430 | 66468538 | 66468430 | ID=cds.MS.gene68090.t1;Parent=MS.gene68090.t1 |
| Gene Sequence |
| Protein sequence |
