Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68140.t1 | XP_003604056.2 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 3.40E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68140.t1 | P49227 | 80.4 | 270 | 53 | 0 | 1 | 270 | 1 | 270 | 7.4e-123 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68140.t1 | G7J8J8 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 2.4e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene68140 | 0.806842 | 6.76E-50 | -1.69E-46 |
| MS.gene051925 | MS.gene68140 | 0.828731 | 7.64E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene68140 | 0.812115 | 4.99E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68140.t1 | MTR_3g118030 | 96.667 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 0.0 | 536 |
| MS.gene68140.t1 | MTR_8g028125 | 89.259 | 270 | 29 | 0 | 1 | 270 | 1 | 270 | 0.0 | 506 |
| MS.gene68140.t1 | MTR_4g016680 | 48.611 | 144 | 35 | 1 | 127 | 270 | 8 | 112 | 1.79e-34 | 122 |
| MS.gene68140.t1 | MTR_2g435940 | 72.222 | 72 | 15 | 1 | 178 | 244 | 24 | 95 | 1.11e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68140.t1 | AT5G39740 | 80.370 | 270 | 53 | 0 | 1 | 270 | 1 | 270 | 8.92e-165 | 459 |
| MS.gene68140.t1 | AT5G39740 | 80.370 | 270 | 53 | 0 | 1 | 270 | 1 | 270 | 8.92e-165 | 459 |
| MS.gene68140.t1 | AT3G25520 | 80.370 | 270 | 53 | 0 | 1 | 270 | 1 | 270 | 1.44e-163 | 456 |
| MS.gene68140.t1 | AT3G25520 | 80.370 | 270 | 53 | 0 | 1 | 270 | 1 | 270 | 1.44e-163 | 456 |
| MS.gene68140.t1 | AT3G25520 | 79.114 | 158 | 33 | 0 | 113 | 270 | 2 | 159 | 5.98e-89 | 263 |
Find 71 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAACAACGTAACGGTATT+TGG | 0.124401 | 3.1:+92798183 | None:intergenic |
| TGCACCAAAGACCCGGTTTC+CGG | 0.261045 | 3.1:+92797634 | None:intergenic |
| TCCTTTGGTGGCTGCTTCTC+AGG | 0.295727 | 3.1:+92797133 | None:intergenic |
| TTATTGCACTGGTCTCCTTT+TGG | 0.304693 | 3.1:-92797872 | MS.gene68140:CDS |
| GCTTGATATATTCACTGAAA+TGG | 0.313676 | 3.1:+92797236 | None:intergenic |
| GGCTTCAGGGAGCTTTGGAC+GGG | 0.327426 | 3.1:-92797528 | MS.gene68140:intron |
| ACCACCGGAAACCGGGTCTT+TGG | 0.336386 | 3.1:-92797638 | MS.gene68140:CDS |
| ATTGTCTCTGCTACCATTGC+TGG | 0.361362 | 3.1:-92798059 | MS.gene68140:CDS |
| AGTTCTTAAAACTCTTGAAA+TGG | 0.366221 | 3.1:-92797842 | MS.gene68140:CDS |
| TGATACCTCTTGTGTTCCTT+TGG | 0.367997 | 3.1:+92797118 | None:intergenic |
| CTTGATATATTCACTGAAAT+GGG | 0.374691 | 3.1:+92797237 | None:intergenic |
| AATCGAGGAACTATACAAAA+AGG | 0.377398 | 3.1:-92797194 | MS.gene68140:CDS |
| CACAGCGACAAAAGGTTTGC+TGG | 0.383857 | 3.1:-92797490 | MS.gene68140:CDS |
| CGAACAACGTAACGGTATTT+GGG | 0.383918 | 3.1:+92798184 | None:intergenic |
| TTAAGACCACCACCGGAAAC+CGG | 0.405019 | 3.1:-92797646 | MS.gene68140:CDS |
| TGTTTGGCTTCAGGGAGCTT+TGG | 0.408256 | 3.1:-92797533 | MS.gene68140:intron |
| TACCTCTTGTGTTCCTTTGG+TGG | 0.421148 | 3.1:+92797121 | None:intergenic |
| GAGAGCACGGAATGGCCTCC+TGG | 0.423509 | 3.1:+92797685 | None:intergenic |
| ATTTGAACATACCTTCATAT+AGG | 0.435520 | 3.1:+92797396 | None:intergenic |
| TGGCTTCAGGGAGCTTTGGA+CGG | 0.456348 | 3.1:-92797529 | MS.gene68140:intron |
| CATAGTTAGTAAGGCCTACA+TGG | 0.460963 | 3.1:+92797985 | None:intergenic |
| CCTCACTTTGGCCTCCATGT+AGG | 0.463629 | 3.1:-92797999 | MS.gene68140:CDS |
| AAAGACCCGGTTTCCGGTGG+TGG | 0.468463 | 3.1:+92797640 | None:intergenic |
| TTCCGTGCTCTCCTTGATGT+TGG | 0.475927 | 3.1:-92797674 | MS.gene68140:CDS |
| TCTTATATTACTCAGGCAAC+CGG | 0.479611 | 3.1:-92797737 | MS.gene68140:intron |
| TTCTTCAGGTTGTACCTGCT+CGG | 0.487421 | 3.1:+92796937 | None:intergenic |
| GCTTCAGGGAGCTTTGGACG+GGG | 0.489494 | 3.1:-92797527 | MS.gene68140:intron |
| ATACCGTTACGTTGTTCGAT+TGG | 0.490656 | 3.1:-92798179 | MS.gene68140:intron |
| TACCTGCAGCATAGTTAGTA+AGG | 0.490657 | 3.1:+92797976 | None:intergenic |
| GCGTTGTTTGTCTTCCGAGC+AGG | 0.491279 | 3.1:-92796951 | MS.gene68140:CDS |
| CTTCAGGGAGCTTTGGACGG+GGG | 0.497730 | 3.1:-92797526 | MS.gene68140:intron |
| TAAGAACTCGGCGAGCCAAA+AGG | 0.499289 | 3.1:+92797857 | None:intergenic |
| ACTCAAGACGCTAACAAATA+CGG | 0.500093 | 3.1:-92798211 | MS.gene68140:CDS |
| GAAATTCAAGAGAAGAAGAG+AGG | 0.503110 | 3.1:-92798269 | MS.gene68140:CDS |
| AGCTTGATGCTGAGGTTCAC+CGG | 0.506705 | 3.1:-92797447 | MS.gene68140:CDS |
| GCCTGAGAAGCAGCCACCAA+AGG | 0.507172 | 3.1:-92797134 | MS.gene68140:CDS |
| ATATTCCTCACAGCGACAAA+AGG | 0.513989 | 3.1:-92797498 | MS.gene68140:CDS |
| ATGTTACCAGCTTATTGCAC+TGG | 0.517859 | 3.1:-92797883 | MS.gene68140:intron |
| CTGTGGAACCAGCTGACTCC+AGG | 0.519286 | 3.1:-92797703 | MS.gene68140:CDS |
| GTTGATTCAGGCATTTGTGA+AGG | 0.519616 | 3.1:-92798329 | MS.gene68140:intron |
| CCGGGTCTTTGGTGCACTCA+AGG | 0.524232 | 3.1:-92797627 | MS.gene68140:intron |
| AAATTCAAGAGAAGAAGAGA+GGG | 0.524882 | 3.1:-92798268 | MS.gene68140:CDS |
| AATGGCCTCCTGGAGTCAGC+TGG | 0.528100 | 3.1:+92797695 | None:intergenic |
| TTGAGTAATCAAACGAACTC+TGG | 0.530507 | 3.1:+92798228 | None:intergenic |
| GCACATGAGCTTCCTCACTT+TGG | 0.534108 | 3.1:-92798011 | MS.gene68140:CDS |
| GAAATGGATGATCAGTATGA+AGG | 0.545359 | 3.1:-92797826 | MS.gene68140:CDS |
| GGTCTTGTTAAGACCACCAC+CGG | 0.557334 | 3.1:-92797653 | MS.gene68140:CDS |
| TTCCACAGAATAATCCTCTC+CGG | 0.558152 | 3.1:+92797718 | None:intergenic |
| CCTTGAGTGCACCAAAGACC+CGG | 0.561480 | 3.1:+92797627 | None:intergenic |
| GGCCTTACTAACTATGCTGC+AGG | 0.566671 | 3.1:-92797978 | MS.gene68140:intron |
| TAAGACCACCACCGGAAACC+GGG | 0.570064 | 3.1:-92797645 | MS.gene68140:CDS |
| AAGCGTGGAATTAAAGCGGA+TGG | 0.570484 | 3.1:-92797217 | MS.gene68140:CDS |
| ACATGTTGCTGCCTATATGA+AGG | 0.573009 | 3.1:-92797407 | MS.gene68140:intron |
| GATTGAGGGATCTGCACGAA+TGG | 0.575419 | 3.1:+92797162 | None:intergenic |
| TAATCAAACGAACTCTGGCT+CGG | 0.582000 | 3.1:+92798233 | None:intergenic |
| AAGAACAATATCACCAGCAA+TGG | 0.583771 | 3.1:+92798046 | None:intergenic |
| TTCAGTGAATATATCAAGCG+TGG | 0.592838 | 3.1:-92797232 | MS.gene68140:CDS |
| GACCAACATCAAGGAGAGCA+CGG | 0.604422 | 3.1:+92797672 | None:intergenic |
| TTACCAATCGAACAACGTAA+CGG | 0.610329 | 3.1:+92798176 | None:intergenic |
| TCTTAACAAGACCAACATCA+AGG | 0.618405 | 3.1:+92797663 | None:intergenic |
| ACCAAAGACCCGGTTTCCGG+TGG | 0.622290 | 3.1:+92797637 | None:intergenic |
| TATCAAGCGTGGAATTAAAG+CGG | 0.637915 | 3.1:-92797221 | MS.gene68140:CDS |
| ACATCAAGGAGAGCACGGAA+TGG | 0.653230 | 3.1:+92797677 | None:intergenic |
| AGCCACCAAAGGAACACAAG+AGG | 0.664029 | 3.1:-92797123 | MS.gene68140:intron |
| TATTACTCAGGCAACCGGAG+AGG | 0.678581 | 3.1:-92797732 | MS.gene68140:intron |
| AATTAAAGCGGATGGAATCG+AGG | 0.679530 | 3.1:-92797209 | MS.gene68140:CDS |
| TGGAACCAGCTGACTCCAGG+AGG | 0.680812 | 3.1:-92797700 | MS.gene68140:CDS |
| CCTACATGGAGGCCAAAGTG+AGG | 0.682005 | 3.1:+92797999 | None:intergenic |
| AGTTAGTAAGGCCTACATGG+AGG | 0.688944 | 3.1:+92797988 | None:intergenic |
| AACCGGAGAGGATTATTCTG+TGG | 0.701124 | 3.1:-92797720 | MS.gene68140:CDS |
| TCAGTATGAAGGCAATGTTG+AGG | 0.719344 | 3.1:-92797815 | MS.gene68140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATTAAAAAAATGAAA+AGG | + | chr3.1:92797984-92798003 | None:intergenic | 10.0% |
| !!! | TTTCATTTTTTTAATTTGTA+AGG | - | chr3.1:92797984-92798003 | MS.gene68140:CDS | 10.0% |
| !! | TGACATTGATATTTATTAAT+CGG | - | chr3.1:92797779-92797798 | MS.gene68140:intron | 15.0% |
| !!! | CGATTAATTTGATAATTATA+TGG | + | chr3.1:92797428-92797447 | None:intergenic | 15.0% |
| !!! | TAATTATATGGATTAAAAAG+AGG | + | chr3.1:92797416-92797435 | None:intergenic | 15.0% |
| !! | AAATACTACTAATTCAAACA+GGG | + | chr3.1:92798296-92798315 | None:intergenic | 20.0% |
| !! | GACATTGATATTTATTAATC+GGG | - | chr3.1:92797780-92797799 | MS.gene68140:intron | 20.0% |
| !! | GTTCAAATAATGTCTTTATT+GGG | - | chr3.1:92797957-92797976 | MS.gene68140:intron | 20.0% |
| !! | TCTACAAGTAGTAATAATAA+TGG | + | chr3.1:92797236-92797255 | None:intergenic | 20.0% |
| !! | TGTTCAAATAATGTCTTTAT+TGG | - | chr3.1:92797956-92797975 | MS.gene68140:intron | 20.0% |
| !!! | AATAATAATGGTTTTGGTTA+GGG | + | chr3.1:92797224-92797243 | None:intergenic | 20.0% |
| !!! | AGTAGTAATAATAATGGTTT+TGG | + | chr3.1:92797230-92797249 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTAGACATTGA+TGG | - | chr3.1:92798054-92798073 | MS.gene68140:CDS | 20.0% |
| !!! | TAATAATAATGGTTTTGGTT+AGG | + | chr3.1:92797225-92797244 | None:intergenic | 20.0% |
| ! | AGTTCTTAAAACTCTTGAAA+TGG | - | chr3.1:92797496-92797515 | MS.gene68140:CDS | 25.0% |
| ! | ATTTGAACATACCTTCATAT+AGG | + | chr3.1:92797945-92797964 | None:intergenic | 25.0% |
| ! | CTTGATATATTCACTGAAAT+GGG | + | chr3.1:92798104-92798123 | None:intergenic | 25.0% |
| ! | GAAATACTACTAATTCAAAC+AGG | + | chr3.1:92798297-92798316 | None:intergenic | 25.0% |
| ! | GAGTAATATAAGACATACAA+AGG | + | chr3.1:92797594-92797613 | None:intergenic | 25.0% |
| ! | GTTAGTTAGTTAGTTAAAAG+AGG | + | chr3.1:92796977-92796996 | None:intergenic | 25.0% |
| ! | TAGGGATTGAAAATTAAGTA+TGG | + | chr3.1:92797206-92797225 | None:intergenic | 25.0% |
| ! | TTGTATGTCTTATATTACTC+AGG | - | chr3.1:92797594-92797613 | MS.gene68140:intron | 25.0% |
| !! | ATTTATTAATCGGGTTTGTT+TGG | - | chr3.1:92797789-92797808 | MS.gene68140:intron | 25.0% |
| !! | GACTATTTACTATTGATGAT+TGG | - | chr3.1:92798258-92798277 | MS.gene68140:CDS | 25.0% |
| !!! | AAATGGGTTTGATATTTTTC+AGG | + | chr3.1:92798088-92798107 | None:intergenic | 25.0% |
| !!! | TAAAGAATGTTTGTTGATTC+AGG | - | chr3.1:92796997-92797016 | MS.gene68140:intron | 25.0% |
| !!! | TTTCAAGAGTTTTAAGAACT+CGG | + | chr3.1:92797496-92797515 | None:intergenic | 25.0% |
| AAATTCAAGAGAAGAAGAGA+GGG | - | chr3.1:92797070-92797089 | MS.gene68140:intron | 30.0% | |
| AATCGAGGAACTATACAAAA+AGG | - | chr3.1:92798144-92798163 | MS.gene68140:intron | 30.0% | |
| GCTTGATATATTCACTGAAA+TGG | + | chr3.1:92798105-92798124 | None:intergenic | 30.0% | |
| GTTAGTTAGTTAAAAGAGGA+TGG | + | chr3.1:92796973-92796992 | None:intergenic | 30.0% | |
| TATCAATGTCACAAGAATAG+AGG | + | chr3.1:92797770-92797789 | None:intergenic | 30.0% | |
| TGAAAATTAAGTATGGAGTG+TGG | + | chr3.1:92797199-92797218 | None:intergenic | 30.0% | |
| ! | CTACACTTTTCATTTCTATG+TGG | - | chr3.1:92797560-92797579 | MS.gene68140:intron | 30.0% |
| AAAAAAGTCTCAAACTCCAC+AGG | + | chr3.1:92798017-92798036 | None:intergenic | 35.0% | |
| AAGAACAATATCACCAGCAA+TGG | + | chr3.1:92797295-92797314 | None:intergenic | 35.0% | |
| ACTCAAGACGCTAACAAATA+CGG | - | chr3.1:92797127-92797146 | MS.gene68140:CDS | 35.0% | |
| GAAATGGATGATCAGTATGA+AGG | - | chr3.1:92797512-92797531 | MS.gene68140:CDS | 35.0% | |
| GAAATTCAAGAGAAGAAGAG+AGG | - | chr3.1:92797069-92797088 | MS.gene68140:intron | 35.0% | |
| TATCAAGCGTGGAATTAAAG+CGG | - | chr3.1:92798117-92798136 | MS.gene68140:intron | 35.0% | |
| TCTTAACAAGACCAACATCA+AGG | + | chr3.1:92797678-92797697 | None:intergenic | 35.0% | |
| TCTTATATTACTCAGGCAAC+CGG | - | chr3.1:92797601-92797620 | MS.gene68140:intron | 35.0% | |
| TTACCAATCGAACAACGTAA+CGG | + | chr3.1:92797165-92797184 | None:intergenic | 35.0% | |
| TTCAGTGAATATATCAAGCG+TGG | - | chr3.1:92798106-92798125 | MS.gene68140:intron | 35.0% | |
| TTGAGTAATCAAACGAACTC+TGG | + | chr3.1:92797113-92797132 | None:intergenic | 35.0% | |
| ! | TACTATTGATGATTGGCAAG+TGG | - | chr3.1:92798265-92798284 | MS.gene68140:CDS | 35.0% |
| !! | AACACAAGAGGTATCACATT+AGG | - | chr3.1:92798227-92798246 | MS.gene68140:CDS | 35.0% |
| !! | TTCACCGGAAGTACATTTTT+GGG | - | chr3.1:92797906-92797925 | MS.gene68140:intron | 35.0% |
| !! | TTCTCAGGCTTTTTGATTGA+GGG | + | chr3.1:92798193-92798212 | None:intergenic | 35.0% |
| AATTAAAGCGGATGGAATCG+AGG | - | chr3.1:92798129-92798148 | MS.gene68140:intron | 40.0% | |
| ACAAGAATAGAGGACATAGG+TGG | + | chr3.1:92797760-92797779 | None:intergenic | 40.0% | |
| ACATGTTGCTGCCTATATGA+AGG | - | chr3.1:92797931-92797950 | MS.gene68140:intron | 40.0% | |
| ATACCGTTACGTTGTTCGAT+TGG | - | chr3.1:92797159-92797178 | MS.gene68140:CDS | 40.0% | |
| ATATTCCTCACAGCGACAAA+AGG | - | chr3.1:92797840-92797859 | MS.gene68140:CDS | 40.0% | |
| ATGTTACCAGCTTATTGCAC+TGG | - | chr3.1:92797455-92797474 | MS.gene68140:CDS | 40.0% | |
| CAAGAATAGAGGACATAGGT+GGG | + | chr3.1:92797759-92797778 | None:intergenic | 40.0% | |
| CATAGTTAGTAAGGCCTACA+TGG | + | chr3.1:92797356-92797375 | None:intergenic | 40.0% | |
| CGAACAACGTAACGGTATTT+GGG | + | chr3.1:92797157-92797176 | None:intergenic | 40.0% | |
| GAAAAAAGAGCTTGATGCTG+AGG | - | chr3.1:92797883-92797902 | MS.gene68140:intron | 40.0% | |
| GTCACAAGAATAGAGGACAT+AGG | + | chr3.1:92797763-92797782 | None:intergenic | 40.0% | |
| TAATCAAACGAACTCTGGCT+CGG | + | chr3.1:92797108-92797127 | None:intergenic | 40.0% | |
| TACCTGCAGCATAGTTAGTA+AGG | + | chr3.1:92797365-92797384 | None:intergenic | 40.0% | |
| TCAGTATGAAGGCAATGTTG+AGG | - | chr3.1:92797523-92797542 | MS.gene68140:CDS | 40.0% | |
| TCGAACAACGTAACGGTATT+TGG | + | chr3.1:92797158-92797177 | None:intergenic | 40.0% | |
| TGATACCTCTTGTGTTCCTT+TGG | + | chr3.1:92798223-92798242 | None:intergenic | 40.0% | |
| TTCCACAGAATAATCCTCTC+CGG | + | chr3.1:92797623-92797642 | None:intergenic | 40.0% | |
| ! | GTTGATTCAGGCATTTGTGA+AGG | - | chr3.1:92797009-92797028 | MS.gene68140:intron | 40.0% |
| ! | TTTGTAAGGCATTCATCCTG+TGG | - | chr3.1:92797998-92798017 | MS.gene68140:CDS | 40.0% |
| !! | CTTCTCAGGCTTTTTGATTG+AGG | + | chr3.1:92798194-92798213 | None:intergenic | 40.0% |
| !! | GTTCACCGGAAGTACATTTT+TGG | - | chr3.1:92797905-92797924 | MS.gene68140:intron | 40.0% |
| !! | TCACCGGAAGTACATTTTTG+GGG | - | chr3.1:92797907-92797926 | MS.gene68140:intron | 40.0% |
| !! | TTATTGCACTGGTCTCCTTT+TGG | - | chr3.1:92797466-92797485 | MS.gene68140:CDS | 40.0% |
| !!! | AAGGTTTGCTGGTTTTGACA+AGG | - | chr3.1:92797859-92797878 | MS.gene68140:CDS | 40.0% |
| AACCGGAGAGGATTATTCTG+TGG | - | chr3.1:92797618-92797637 | MS.gene68140:intron | 45.0% | |
| AAGCGTGGAATTAAAGCGGA+TGG | - | chr3.1:92798121-92798140 | MS.gene68140:intron | 45.0% | |
| AGTTAGTAAGGCCTACATGG+AGG | + | chr3.1:92797353-92797372 | None:intergenic | 45.0% | |
| ATTGTCTCTGCTACCATTGC+TGG | - | chr3.1:92797279-92797298 | MS.gene68140:intron | 45.0% | |
| GTCCCCCAAAAATGTACTTC+CGG | + | chr3.1:92797913-92797932 | None:intergenic | 45.0% | |
| TACCTCTTGTGTTCCTTTGG+TGG | + | chr3.1:92798220-92798239 | None:intergenic | 45.0% | |
| ! | AATCGGGTTTGTTTGGCTTC+AGG | - | chr3.1:92797796-92797815 | MS.gene68140:intron | 45.0% |
| ! | ATCGGGTTTGTTTGGCTTCA+GGG | - | chr3.1:92797797-92797816 | MS.gene68140:intron | 45.0% |
| !! | CACCGGAAGTACATTTTTGG+GGG | - | chr3.1:92797908-92797927 | MS.gene68140:intron | 45.0% |
| AGCCACCAAAGGAACACAAG+AGG | - | chr3.1:92798215-92798234 | MS.gene68140:CDS | 50.0% | |
| AGCTTGATGCTGAGGTTCAC+CGG | - | chr3.1:92797891-92797910 | MS.gene68140:intron | 50.0% | |
| AGGAGACCAGTGCAATAAGC+TGG | + | chr3.1:92797464-92797483 | None:intergenic | 50.0% | |
| CACAGCGACAAAAGGTTTGC+TGG | - | chr3.1:92797848-92797867 | MS.gene68140:CDS | 50.0% | |
| GACCAACATCAAGGAGAGCA+CGG | + | chr3.1:92797669-92797688 | None:intergenic | 50.0% | |
| GATTGAGGGATCTGCACGAA+TGG | + | chr3.1:92798179-92798198 | None:intergenic | 50.0% | |
| GCACATGAGCTTCCTCACTT+TGG | - | chr3.1:92797327-92797346 | MS.gene68140:intron | 50.0% | |
| GGCCTTACTAACTATGCTGC+AGG | - | chr3.1:92797360-92797379 | MS.gene68140:intron | 50.0% | |
| TAAGAACTCGGCGAGCCAAA+AGG | + | chr3.1:92797484-92797503 | None:intergenic | 50.0% | |
| TATTACTCAGGCAACCGGAG+AGG | - | chr3.1:92797606-92797625 | MS.gene68140:intron | 50.0% | |
| TTAAGACCACCACCGGAAAC+CGG | - | chr3.1:92797692-92797711 | MS.gene68140:CDS | 50.0% | |
| TTCCGTGCTCTCCTTGATGT+TGG | - | chr3.1:92797664-92797683 | MS.gene68140:CDS | 50.0% | |
| ! | ACATCAAGGAGAGCACGGAA+TGG | + | chr3.1:92797664-92797683 | None:intergenic | 50.0% |
| ! | GCAAACCTTTTGTCGCTGTG+AGG | + | chr3.1:92797848-92797867 | None:intergenic | 50.0% |
| ! | TGTTTGGCTTCAGGGAGCTT+TGG | - | chr3.1:92797805-92797824 | MS.gene68140:intron | 50.0% |
| !! | GGTCTTGTTAAGACCACCAC+CGG | - | chr3.1:92797685-92797704 | MS.gene68140:CDS | 50.0% |
| CCTACATGGAGGCCAAAGTG+AGG | + | chr3.1:92797342-92797361 | None:intergenic | 55.0% | |
| CCTCACTTTGGCCTCCATGT+AGG | - | chr3.1:92797339-92797358 | MS.gene68140:intron | 55.0% | |
| CCTTGAGTGCACCAAAGACC+CGG | + | chr3.1:92797714-92797733 | None:intergenic | 55.0% | |
| GCGTTGTTTGTCTTCCGAGC+AGG | - | chr3.1:92798387-92798406 | MS.gene68140:intron | 55.0% | |
| TAAGACCACCACCGGAAACC+GGG | - | chr3.1:92797693-92797712 | MS.gene68140:CDS | 55.0% | |
| TGCACCAAAGACCCGGTTTC+CGG | + | chr3.1:92797707-92797726 | None:intergenic | 55.0% | |
| ! | TCCTTTGGTGGCTGCTTCTC+AGG | + | chr3.1:92798208-92798227 | None:intergenic | 55.0% |
| !! | TGGCTTCAGGGAGCTTTGGA+CGG | - | chr3.1:92797809-92797828 | MS.gene68140:intron | 55.0% |
| AAAGACCCGGTTTCCGGTGG+TGG | + | chr3.1:92797701-92797720 | None:intergenic | 60.0% | |
| AATGGCCTCCTGGAGTCAGC+TGG | + | chr3.1:92797646-92797665 | None:intergenic | 60.0% | |
| ACCAAAGACCCGGTTTCCGG+TGG | + | chr3.1:92797704-92797723 | None:intergenic | 60.0% | |
| ACCACCGGAAACCGGGTCTT+TGG | - | chr3.1:92797700-92797719 | MS.gene68140:CDS | 60.0% | |
| GCCTGAGAAGCAGCCACCAA+AGG | - | chr3.1:92798204-92798223 | MS.gene68140:CDS | 60.0% | |
| ! | CCGGGTCTTTGGTGCACTCA+AGG | - | chr3.1:92797711-92797730 | MS.gene68140:CDS | 60.0% |
| ! | CTGTGGAACCAGCTGACTCC+AGG | - | chr3.1:92797635-92797654 | MS.gene68140:CDS | 60.0% |
| ! | TGGAACCAGCTGACTCCAGG+AGG | - | chr3.1:92797638-92797657 | MS.gene68140:CDS | 60.0% |
| !! | CTTCAGGGAGCTTTGGACGG+GGG | - | chr3.1:92797812-92797831 | MS.gene68140:intron | 60.0% |
| !! | GCTTCAGGGAGCTTTGGACG+GGG | - | chr3.1:92797811-92797830 | MS.gene68140:intron | 60.0% |
| !! | GGCTTCAGGGAGCTTTGGAC+GGG | - | chr3.1:92797810-92797829 | MS.gene68140:intron | 60.0% |
| ! | GAGAGCACGGAATGGCCTCC+TGG | + | chr3.1:92797656-92797675 | None:intergenic | 65.0% |
| !! | GGGAGCTTTGGACGGGGGTC+TGG | - | chr3.1:92797817-92797836 | MS.gene68140:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92796941 | 92798419 | 92796941 | ID=MS.gene68140 |
| chr3.1 | mRNA | 92796941 | 92798419 | 92796941 | ID=MS.gene68140.t1;Parent=MS.gene68140 |
| chr3.1 | exon | 92798417 | 92798419 | 92798417 | ID=MS.gene68140.t1.exon1;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92798417 | 92798419 | 92798417 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92798180 | 92798341 | 92798180 | ID=MS.gene68140.t1.exon2;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92798180 | 92798341 | 92798180 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92797979 | 92798105 | 92797979 | ID=MS.gene68140.t1.exon3;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92797979 | 92798105 | 92797979 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92797816 | 92797895 | 92797816 | ID=MS.gene68140.t1.exon4;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92797816 | 92797895 | 92797816 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92797628 | 92797744 | 92797628 | ID=MS.gene68140.t1.exon5;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92797628 | 92797744 | 92797628 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92797408 | 92797542 | 92797408 | ID=MS.gene68140.t1.exon6;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92797408 | 92797542 | 92797408 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92797124 | 92797293 | 92797124 | ID=MS.gene68140.t1.exon7;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92797124 | 92797293 | 92797124 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| chr3.1 | exon | 92796941 | 92796992 | 92796941 | ID=MS.gene68140.t1.exon8;Parent=MS.gene68140.t1 |
| chr3.1 | CDS | 92796941 | 92796992 | 92796941 | ID=cds.MS.gene68140.t1;Parent=MS.gene68140.t1 |
| Gene Sequence |
| Protein sequence |
