Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049306.t1 | XP_003602573.1 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 4.10E-171 | 610.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049306.t1 | O65751 | 89.3 | 300 | 31 | 1 | 1 | 299 | 1 | 300 | 5.4e-156 | 551.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049306.t1 | G7JB01 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 2.9e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene049376 | 0.880042 | 7.60E-70 | -1.69E-46 |
| MS.gene049306 | MS.gene049387 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene049306 | MS.gene051925 | 0.903382 | 3.68E-79 | -1.69E-46 |
| MS.gene049306 | MS.gene051927 | 0.905464 | 4.18E-80 | -1.69E-46 |
| MS.gene049306 | MS.gene052666 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene049306 | MS.gene053176 | -0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene054548 | -0.823755 | 1.17E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene057321 | 0.867297 | 1.52E-65 | -1.69E-46 |
| MS.gene049306 | MS.gene059340 | 0.848219 | 7.05E-60 | -1.69E-46 |
| MS.gene049306 | MS.gene059868 | -0.820626 | 6.21E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene060483 | 0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene049306 | MS.gene06169 | 0.821432 | 4.05E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene06433 | 0.989933 | 2.67E-180 | -1.69E-46 |
| MS.gene049306 | MS.gene065168 | -0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene049306 | MS.gene06617 | 0.837213 | 5.94E-57 | -1.69E-46 |
| MS.gene049306 | MS.gene066811 | 0.82416 | 9.38E-54 | -1.69E-46 |
| MS.gene049306 | MS.gene066830 | 0.864684 | 1.02E-64 | -1.69E-46 |
| MS.gene049306 | MS.gene067331 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene049306 | MS.gene06833 | 0.838249 | 3.22E-57 | -1.69E-46 |
| MS.gene049306 | MS.gene068775 | 0.8161 | 6.58E-52 | -1.69E-46 |
| MS.gene049306 | MS.gene069383 | -0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene049306 | MS.gene06999 | 0.900781 | 5.19E-78 | -1.69E-46 |
| MS.gene049306 | MS.gene072093 | 0.837209 | 5.95E-57 | -1.69E-46 |
| MS.gene049306 | MS.gene07245 | 0.804502 | 2.09E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene074400 | 0.884718 | 1.51E-71 | -1.69E-46 |
| MS.gene049306 | MS.gene08636 | 0.819098 | 1.39E-52 | -1.69E-46 |
| MS.gene049306 | MS.gene08869 | 0.878998 | 1.78E-69 | -1.69E-46 |
| MS.gene049306 | MS.gene09038 | 0.857213 | 1.90E-62 | -1.69E-46 |
| MS.gene049306 | MS.gene09204 | 0.856969 | 2.25E-62 | -1.69E-46 |
| MS.gene049306 | MS.gene25236 | 0.862489 | 4.89E-64 | -1.69E-46 |
| MS.gene049306 | MS.gene25240 | 0.917104 | 7.97E-86 | -1.69E-46 |
| MS.gene049306 | MS.gene25639 | 0.864629 | 1.06E-64 | -1.69E-46 |
| MS.gene049306 | MS.gene25649 | 0.911601 | 5.05E-83 | -1.69E-46 |
| MS.gene049306 | MS.gene25903 | 0.853534 | 2.24E-61 | -1.69E-46 |
| MS.gene049306 | MS.gene26792 | 0.888329 | 6.50E-73 | -1.69E-46 |
| MS.gene049306 | MS.gene27028 | 0.847065 | 1.46E-59 | -1.69E-46 |
| MS.gene049306 | MS.gene27265 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene049306 | MS.gene30895 | 0.881789 | 1.79E-70 | -1.69E-46 |
| MS.gene049306 | MS.gene30990 | 0.987999 | 2.50E-172 | -1.69E-46 |
| MS.gene049306 | MS.gene31056 | 0.877236 | 7.39E-69 | -1.69E-46 |
| MS.gene049306 | MS.gene36309 | -0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene38035 | 0.830368 | 3.06E-55 | -1.69E-46 |
| MS.gene049306 | MS.gene40321 | 0.88577 | 6.11E-72 | -1.69E-46 |
| MS.gene049306 | MS.gene42019 | 0.82539 | 4.81E-54 | -1.69E-46 |
| MS.gene049306 | MS.gene43038 | 0.819929 | 8.97E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene47820 | -0.803226 | 3.86E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene55890 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene049306 | MS.gene56673 | 0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene58173 | 0.895201 | 1.20E-75 | -1.69E-46 |
| MS.gene049306 | MS.gene59228 | 0.833792 | 4.35E-56 | -1.69E-46 |
| MS.gene049306 | MS.gene59457 | 0.804971 | 1.67E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene61653 | -0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene049306 | MS.gene62426 | 0.804095 | 2.55E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene62620 | 0.870028 | 1.99E-66 | -1.69E-46 |
| MS.gene049306 | MS.gene65428 | -0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene049306 | MS.gene66653 | -0.813834 | 2.09E-51 | -1.69E-46 |
| MS.gene049306 | MS.gene68140 | 0.806842 | 6.76E-50 | -1.69E-46 |
| MS.gene049306 | MS.gene70316 | 0.840177 | 1.02E-57 | -1.69E-46 |
| MS.gene049306 | MS.gene70579 | 0.858029 | 1.09E-62 | -1.69E-46 |
| MS.gene049306 | MS.gene70808 | 0.845816 | 3.21E-59 | -1.69E-46 |
| MS.gene049306 | MS.gene75309 | 0.869748 | 2.45E-66 | -1.69E-46 |
| MS.gene049306 | MS.gene75598 | 0.874086 | 8.89E-68 | -1.69E-46 |
| MS.gene049306 | MS.gene76490 | -0.800212 | 1.60E-48 | -1.69E-46 |
| MS.gene049306 | MS.gene79721 | 0.8297 | 4.45E-55 | -1.69E-46 |
| MS.gene049306 | MS.gene80889 | 0.852418 | 4.68E-61 | -1.69E-46 |
| MS.gene049306 | MS.gene82384 | 0.804773 | 1.84E-49 | -1.69E-46 |
| MS.gene049306 | MS.gene83062 | 0.863241 | 2.87E-64 | -1.69E-46 |
| MS.gene049306 | MS.gene83156 | 0.800284 | 1.55E-48 | -1.69E-46 |
| MS.gene049306 | MS.gene88707 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene049306 | MS.gene88918 | 0.863586 | 2.24E-64 | -1.69E-46 |
| MS.gene049306 | MS.gene90755 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene049306 | MS.gene92142 | 0.892068 | 2.23E-74 | -1.69E-46 |
| MS.gene049306 | MS.gene93325 | 0.845689 | 3.47E-59 | -1.69E-46 |
| MS.gene049306 | MS.gene95889 | 0.932744 | 5.38E-95 | -1.69E-46 |
| MS.gene049306 | MS.gene96194 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene049306 | MS.gene98171 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene049306 | MS.gene98978 | 0.899759 | 1.44E-77 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049306.t1 | MTR_3g095810 | 98.662 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 0.0 | 613 |
| MS.gene049306.t1 | MTR_3g095810 | 97.993 | 299 | 4 | 1 | 1 | 299 | 1 | 297 | 0.0 | 603 |
| MS.gene049306.t1 | MTR_7g107400 | 93.174 | 293 | 18 | 2 | 9 | 299 | 5 | 297 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049306.t1 | AT3G04770 | 75.986 | 279 | 49 | 6 | 7 | 275 | 9 | 279 | 7.37e-149 | 419 |
| MS.gene049306.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 4.92e-145 | 409 |
| MS.gene049306.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 5.86e-145 | 409 |
| MS.gene049306.t1 | AT3G04770 | 88.832 | 197 | 22 | 0 | 7 | 203 | 9 | 205 | 5.15e-131 | 375 |
Find 94 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTTCTTTACCAGCTTC+TGG | 0.204965 | 3.1:-76372369 | None:intergenic |
| CTCTTGCTCCTTGGCCTCTT+CGG | 0.208222 | 3.1:-76372196 | None:intergenic |
| TTCTTTCAGTTGCAGGGGAC+TGG | 0.226869 | 3.1:+76372664 | MS.gene049306:intron |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | 3.1:+76371950 | MS.gene049306:CDS |
| CAGCAGCTCCTGGTGTCAAC+TGG | 0.259408 | 3.1:+76372340 | MS.gene049306:CDS |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | 3.1:-76371670 | None:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | 3.1:+76371517 | MS.gene049306:CDS |
| TCTTGCTCCTTGGCCTCTTC+GGG | 0.307675 | 3.1:-76372195 | None:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | 3.1:+76371424 | MS.gene049306:intron |
| TCTTTCAGTTGCAGGGGACT+GGG | 0.335061 | 3.1:+76372665 | MS.gene049306:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | 3.1:-76371617 | None:intergenic |
| TTCATCCTCCTCTTGCTCCT+TGG | 0.369266 | 3.1:-76372205 | None:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | 3.1:-76371604 | None:intergenic |
| GCTGTCACAGATTCAATTCC+AGG | 0.382679 | 3.1:-76372723 | None:intergenic |
| CATCAGCAGCCAACATCATC+TGG | 0.391970 | 3.1:-76370616 | None:intergenic |
| ATTGAATCTGTGACAGCAAC+TGG | 0.400686 | 3.1:+76372729 | MS.gene049306:CDS |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | 3.1:-76371842 | None:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | 3.1:+76371841 | MS.gene049306:CDS |
| AATGTTCTTTACCAGCTTCT+GGG | 0.407962 | 3.1:-76372368 | None:intergenic |
| ACACCAGGAGCTGCTGGAAT+AGG | 0.410453 | 3.1:-76372333 | None:intergenic |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | 3.1:-76371928 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | 3.1:-76371841 | None:intergenic |
| TGAAGCAATAACGTTCCATT+TGG | 0.418662 | 3.1:-76370667 | None:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | 3.1:+76371571 | MS.gene049306:CDS |
| CAGTTGACACCAGGAGCTGC+TGG | 0.455088 | 3.1:-76372339 | None:intergenic |
| GCCATTGCTGACTTCAATGC+TGG | 0.456055 | 3.1:+76372246 | MS.gene049306:CDS |
| TGTGGTGCTGCATCAGTCCA+TGG | 0.469309 | 3.1:-76372309 | None:intergenic |
| AATCTGTGACAGCAACTGGC+TGG | 0.470930 | 3.1:+76372733 | MS.gene049306:CDS |
| GTGGGAATTTGTTGCGGTGG+TGG | 0.473747 | 3.1:-76372699 | None:intergenic |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | 3.1:-76371611 | None:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | 3.1:-76371504 | None:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | 3.1:+76371553 | MS.gene049306:CDS |
| AACTGGGCTGCCCCAGAAGC+TGG | 0.477922 | 3.1:+76372357 | MS.gene049306:CDS |
| AGCAGCTCCTGGTGTCAACT+GGG | 0.479182 | 3.1:+76372341 | MS.gene049306:CDS |
| TAAGAACTGCGACTTCCAAA+TGG | 0.482705 | 3.1:+76370652 | MS.gene049306:CDS |
| CAGCCTATTCCAGCAGCTCC+TGG | 0.483642 | 3.1:+76372330 | MS.gene049306:CDS |
| CCGCAACAAATTCCCACTCC+TGG | 0.483783 | 3.1:+76372705 | MS.gene049306:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | 3.1:-76371901 | None:intergenic |
| AGTGTATTCTTTCAGTTGCA+GGG | 0.499899 | 3.1:+76372658 | MS.gene049306:intron |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | 3.1:+76371458 | MS.gene049306:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | 3.1:-76371929 | None:intergenic |
| CTTTCAGTTGCAGGGGACTG+GGG | 0.513229 | 3.1:+76372666 | MS.gene049306:intron |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | 3.1:+76371901 | MS.gene049306:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | 3.1:+76371666 | MS.gene049306:CDS |
| AATGCTGGTGGTCCATCTGA+TGG | 0.520603 | 3.1:+76372261 | MS.gene049306:CDS |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | 3.1:-76371532 | None:intergenic |
| CGAAGAGGCCAAGGAGCAAG+AGG | 0.529876 | 3.1:+76372197 | MS.gene049306:CDS |
| TGCTTCAAACGCCGCAACGA+TGG | 0.530057 | 3.1:+76370683 | MS.gene049306:CDS |
| ATCTGTGACAGCAACTGGCT+GGG | 0.531636 | 3.1:+76372734 | MS.gene049306:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | 3.1:-76371871 | None:intergenic |
| ATCACATCCCACTTAAGACC+TGG | 0.536430 | 3.1:-76372015 | None:intergenic |
| GGGGCAGCCCAGTTGACACC+AGG | 0.539769 | 3.1:-76372348 | None:intergenic |
| TAGAGAACCCGAAGAGGCCA+AGG | 0.540338 | 3.1:+76372188 | MS.gene049306:CDS |
| CTATTCGCCCAGGTCTTAAG+TGG | 0.540613 | 3.1:+76372007 | MS.gene049306:CDS |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | 3.1:-76371503 | None:intergenic |
| CCAGGAGTGGGAATTTGTTG+CGG | 0.543589 | 3.1:-76372705 | None:intergenic |
| CTGACGGGATGAAAGTTGTT+CGG | 0.545281 | 3.1:-76370570 | None:intergenic |
| CGCAGTTCTTAGTGCCGAGG+TGG | 0.555885 | 3.1:-76370640 | None:intergenic |
| AGGTCTTAAGTGGGATGTGA+TGG | 0.569141 | 3.1:+76372017 | MS.gene049306:CDS |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | 3.1:+76371921 | MS.gene049306:CDS |
| GTGTATTCTTTCAGTTGCAG+GGG | 0.570945 | 3.1:+76372659 | MS.gene049306:intron |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | 3.1:+76371828 | MS.gene049306:intron |
| CACAGATTCAATTCCAGGAG+TGG | 0.579651 | 3.1:-76372718 | None:intergenic |
| GCAATGGCATAATCTAGAGC+AGG | 0.581740 | 3.1:-76372231 | None:intergenic |
| GTGGTCCATCTGATGGTCAG+TGG | 0.581948 | 3.1:+76372268 | MS.gene049306:CDS |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | 3.1:+76371997 | MS.gene049306:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | 3.1:-76371476 | None:intergenic |
| ATGTTCTTTACCAGCTTCTG+GGG | 0.588593 | 3.1:-76372367 | None:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | 3.1:-76371635 | None:intergenic |
| ACAGATTCAATTCCAGGAGT+GGG | 0.591012 | 3.1:-76372717 | None:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | 3.1:+76371937 | MS.gene049306:CDS |
| AGAGGCCAAGGAGCAAGAGG+AGG | 0.600295 | 3.1:+76372200 | MS.gene049306:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | 3.1:+76371459 | MS.gene049306:CDS |
| GGAGCTGCTGGAATAGGCTG+TGG | 0.601218 | 3.1:-76372327 | None:intergenic |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | 3.1:+76371509 | MS.gene049306:CDS |
| ATTGCTGACTTCAATGCTGG+TGG | 0.602149 | 3.1:+76372249 | MS.gene049306:CDS |
| CTACTGCAATTGAGCAGCCA+TGG | 0.603201 | 3.1:+76372292 | MS.gene049306:CDS |
| GGAGTGGGAATTTGTTGCGG+TGG | 0.607574 | 3.1:-76372702 | None:intergenic |
| TCACATCCCACTTAAGACCT+GGG | 0.607979 | 3.1:-76372014 | None:intergenic |
| CATGGCTGCTCAATTGCAGT+AGG | 0.613104 | 3.1:-76372291 | None:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | 3.1:+76371586 | MS.gene049306:CDS |
| GTAGGCCACTGACCATCAGA+TGG | 0.625414 | 3.1:-76372273 | None:intergenic |
| ACCAGCATTGAAGTCAGCAA+TGG | 0.630888 | 3.1:-76372247 | None:intergenic |
| TTTGAACGTTACCATCGTTG+CGG | 0.631932 | 3.1:-76370694 | None:intergenic |
| AGTCGCAGTTCTTAGTGCCG+AGG | 0.635317 | 3.1:-76370643 | None:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | 3.1:+76371922 | MS.gene049306:CDS |
| AGCTGACATCCAGATGATGT+TGG | 0.641030 | 3.1:+76370607 | MS.gene049306:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | 3.1:-76371548 | None:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | 3.1:-76371502 | None:intergenic |
| TATTCGCCCAGGTCTTAAGT+GGG | 0.666814 | 3.1:+76372008 | MS.gene049306:CDS |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | 3.1:-76371646 | None:intergenic |
| TTGGCTGCTGATGTCCACCT+CGG | 0.712261 | 3.1:+76370626 | MS.gene049306:CDS |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | 3.1:-76371501 | None:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | 3.1:-76371660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAATGAATACA+TGG | - | chr3.1:76372633-76372652 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | chr3.1:76371403-76371422 | MS.gene049306:intron | 10.0% |
| !!! | ATTTTAAAAGATGACAATAA+CGG | - | chr3.1:76372501-76372520 | None:intergenic | 15.0% |
| !! | AAAACAAATTGAAGATCAAA+GGG | - | chr3.1:76372474-76372493 | None:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | chr3.1:76371189-76371208 | None:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | chr3.1:76371424-76371443 | MS.gene049306:intron | 20.0% |
| !! | TAAAACAAATTGAAGATCAA+AGG | - | chr3.1:76372475-76372494 | None:intergenic | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | chr3.1:76372146-76372165 | None:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | chr3.1:76371316-76371335 | None:intergenic | 20.0% |
| !!! | AGGATGATTAATTACAATTT+TGG | + | chr3.1:76370875-76370894 | MS.gene049306:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | chr3.1:76371734-76371753 | MS.gene049306:intron | 20.0% |
| !!! | GTTTTGTTTTGTTTGTTTTA+CGG | + | chr3.1:76371232-76371251 | MS.gene049306:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | chr3.1:76371712-76371731 | MS.gene049306:intron | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | chr3.1:76371043-76371062 | None:intergenic | 20.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | chr3.1:76371369-76371388 | MS.gene049306:intron | 25.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | chr3.1:76370766-76370785 | None:intergenic | 25.0% |
| ! | ATTTCTCTTCGACTTTAATT+TGG | + | chr3.1:76372443-76372462 | MS.gene049306:intron | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | chr3.1:76371435-76371454 | MS.gene049306:CDS | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | chr3.1:76371755-76371774 | MS.gene049306:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | chr3.1:76371434-76371453 | MS.gene049306:CDS | 25.0% |
| !! | AAAAATCTTGAGTTTAGGTT+AGG | - | chr3.1:76372419-76372438 | None:intergenic | 25.0% |
| !! | TCGTTAACAATCTAGTTTAT+AGG | + | chr3.1:76370855-76370874 | MS.gene049306:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | chr3.1:76372149-76372168 | MS.gene049306:intron | 25.0% |
| !! | TTTCTCTTCGACTTTAATTT+GGG | + | chr3.1:76372444-76372463 | MS.gene049306:intron | 25.0% |
| !!! | AACCTAAACTCAAGATTTTT+TGG | + | chr3.1:76372419-76372438 | MS.gene049306:intron | 25.0% |
| AACACAAGGTGTAACTTAAT+TGG | - | chr3.1:76371287-76371306 | None:intergenic | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | chr3.1:76371614-76371633 | None:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | chr3.1:76371286-76371305 | None:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | chr3.1:76371509-76371528 | MS.gene049306:CDS | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | chr3.1:76371506-76371525 | None:intergenic | 30.0% | |
| ATTAACAAGCAAACATGTCA+AGG | - | chr3.1:76371704-76371723 | None:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | chr3.1:76371287-76371306 | MS.gene049306:intron | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | chr3.1:76371771-76371790 | None:intergenic | 30.0% | |
| TGCCAAAAAATCTTGAGTTT+AGG | - | chr3.1:76372424-76372443 | None:intergenic | 30.0% | |
| TGTTAAGAATCGAGATTAAG+TGG | + | chr3.1:76370814-76370833 | MS.gene049306:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | chr3.1:76371288-76371307 | MS.gene049306:intron | 30.0% | |
| ! | AATTCTGCAAAACGGTTTTT+AGG | + | chr3.1:76370941-76370960 | MS.gene049306:intron | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | chr3.1:76371054-76371073 | MS.gene049306:intron | 30.0% |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | chr3.1:76371785-76371804 | MS.gene049306:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | chr3.1:76371057-76371076 | None:intergenic | 30.0% |
| AAATGTTCTTTACCAGCTTC+TGG | - | chr3.1:76372372-76372391 | None:intergenic | 35.0% | |
| AATGTTCTTTACCAGCTTCT+GGG | - | chr3.1:76372371-76372390 | None:intergenic | 35.0% | |
| AGCAAACATGTCAAGGATAA+TGG | - | chr3.1:76371697-76371716 | None:intergenic | 35.0% | |
| AGTGTATTCTTTCAGTTGCA+GGG | + | chr3.1:76372658-76372677 | MS.gene049306:intron | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | chr3.1:76371504-76371523 | None:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | chr3.1:76371607-76371626 | None:intergenic | 35.0% | |
| CAAAACAAAACGCAACACTA+TGG | - | chr3.1:76371223-76371242 | None:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | chr3.1:76371507-76371526 | None:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | chr3.1:76371904-76371923 | None:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | chr3.1:76371901-76371920 | MS.gene049306:CDS | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | chr3.1:76371620-76371639 | None:intergenic | 35.0% | |
| GAGTGTAGTAATGATGTCTT+GGG | - | chr3.1:76372537-76372556 | None:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | chr3.1:76371505-76371524 | None:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | chr3.1:76371551-76371570 | None:intergenic | 35.0% | |
| TAGTGTATTCTTTCAGTTGC+AGG | + | chr3.1:76372657-76372676 | MS.gene049306:intron | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | chr3.1:76370670-76370689 | None:intergenic | 35.0% | |
| TGAGTGTAGTAATGATGTCT+TGG | - | chr3.1:76372538-76372557 | None:intergenic | 35.0% | |
| ! | CTGTTTGGAATTCTGCAAAA+CGG | + | chr3.1:76370933-76370952 | MS.gene049306:intron | 35.0% |
| ! | TGTTCACTTTCATTTTGTGC+TGG | + | chr3.1:76370908-76370927 | MS.gene049306:intron | 35.0% |
| AATCAAGGAACCCAAACACA+AGG | - | chr3.1:76371301-76371320 | None:intergenic | 40.0% | |
| ACACAGTGCTGTGTAAAGAA+GGG | - | chr3.1:76372123-76372142 | None:intergenic | 40.0% | |
| ACAGATTCAATTCCAGGAGT+GGG | - | chr3.1:76372720-76372739 | None:intergenic | 40.0% | |
| ATGTTCTTTACCAGCTTCTG+GGG | - | chr3.1:76372370-76372389 | None:intergenic | 40.0% | |
| ATTGAATCTGTGACAGCAAC+TGG | + | chr3.1:76372729-76372748 | MS.gene049306:CDS | 40.0% | |
| GTGTATTCTTTCAGTTGCAG+GGG | + | chr3.1:76372659-76372678 | MS.gene049306:intron | 40.0% | |
| GTGTCACAGAAAGCAATAGT+TGG | - | chr3.1:76371874-76371893 | None:intergenic | 40.0% | |
| TAAGAACTGCGACTTCCAAA+TGG | + | chr3.1:76370652-76370671 | MS.gene049306:CDS | 40.0% | |
| TTTGAACGTTACCATCGTTG+CGG | - | chr3.1:76370697-76370716 | None:intergenic | 40.0% | |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | chr3.1:76371937-76371956 | MS.gene049306:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | chr3.1:76371684-76371703 | None:intergenic | 40.0% |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | chr3.1:76371553-76371572 | MS.gene049306:CDS | 40.0% |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | chr3.1:76372182-76372201 | MS.gene049306:CDS | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | chr3.1:76370957-76370976 | MS.gene049306:intron | 40.0% |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | chr3.1:76370951-76370970 | MS.gene049306:intron | 40.0% |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | chr3.1:76371932-76371951 | None:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | chr3.1:76370589-76370608 | None:intergenic | 40.0% |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | chr3.1:76370588-76370607 | None:intergenic | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | chr3.1:76371950-76371969 | MS.gene049306:CDS | 40.0% |
| ACTGGAGCTAATGCTATTGC+AGG | + | chr3.1:76371571-76371590 | MS.gene049306:CDS | 45.0% | |
| AGAAACTTCAACTAGCTGCC+AGG | + | chr3.1:76371458-76371477 | MS.gene049306:CDS | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | chr3.1:76370607-76370626 | MS.gene049306:CDS | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | chr3.1:76372017-76372036 | MS.gene049306:CDS | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | chr3.1:76372018-76372037 | None:intergenic | 45.0% | |
| CACAGATTCAATTCCAGGAG+TGG | - | chr3.1:76372721-76372740 | None:intergenic | 45.0% | |
| CGCAACACTATGGATCTGTT+TGG | - | chr3.1:76371213-76371232 | None:intergenic | 45.0% | |
| CTGACGGGATGAAAGTTGTT+CGG | - | chr3.1:76370573-76370592 | None:intergenic | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | chr3.1:76371459-76371478 | MS.gene049306:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | chr3.1:76372124-76372143 | None:intergenic | 45.0% | |
| GCTGTCACAGATTCAATTCC+AGG | - | chr3.1:76372726-76372745 | None:intergenic | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | chr3.1:76371922-76371941 | MS.gene049306:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | chr3.1:76371517-76371536 | MS.gene049306:CDS | 45.0% | |
| TATTCGCCCAGGTCTTAAGT+GGG | + | chr3.1:76372008-76372027 | MS.gene049306:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | chr3.1:76372017-76372036 | None:intergenic | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | chr3.1:76371666-76371685 | MS.gene049306:CDS | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | chr3.1:76371921-76371940 | MS.gene049306:CDS | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | chr3.1:76371828-76371847 | MS.gene049306:intron | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | chr3.1:76371673-76371692 | None:intergenic | 45.0% | |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | chr3.1:76372250-76372269 | None:intergenic | 45.0% |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | chr3.1:76372234-76372253 | None:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | chr3.1:76372249-76372268 | MS.gene049306:CDS | 45.0% |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | chr3.1:76371931-76371950 | None:intergenic | 45.0% |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | chr3.1:76370918-76370937 | MS.gene049306:intron | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | chr3.1:76371957-76371976 | MS.gene049306:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | chr3.1:76371966-76371985 | MS.gene049306:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | chr3.1:76371962-76371981 | MS.gene049306:CDS | 45.0% |
| AATCTGTGACAGCAACTGGC+TGG | + | chr3.1:76372733-76372752 | MS.gene049306:CDS | 50.0% | |
| AATGCTGGTGGTCCATCTGA+TGG | + | chr3.1:76372261-76372280 | MS.gene049306:CDS | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | chr3.1:76371535-76371554 | None:intergenic | 50.0% | |
| ATCTGTGACAGCAACTGGCT+GGG | + | chr3.1:76372734-76372753 | MS.gene049306:CDS | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | chr3.1:76371586-76371605 | MS.gene049306:CDS | 50.0% | |
| CATCAGCAGCCAACATCATC+TGG | - | chr3.1:76370619-76370638 | None:intergenic | 50.0% | |
| CATGGCTGCTCAATTGCAGT+AGG | - | chr3.1:76372294-76372313 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | chr3.1:76371844-76371863 | None:intergenic | 50.0% | |
| CTACTGCAATTGAGCAGCCA+TGG | + | chr3.1:76372292-76372311 | MS.gene049306:CDS | 50.0% | |
| CTATTCGCCCAGGTCTTAAG+TGG | + | chr3.1:76372007-76372026 | MS.gene049306:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | chr3.1:76371649-76371668 | None:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | chr3.1:76371845-76371864 | None:intergenic | 50.0% | |
| TCTTTCAGTTGCAGGGGACT+GGG | + | chr3.1:76372665-76372684 | MS.gene049306:intron | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | chr3.1:76372208-76372227 | None:intergenic | 50.0% | |
| TTCTTTCAGTTGCAGGGGAC+TGG | + | chr3.1:76372664-76372683 | MS.gene049306:intron | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | chr3.1:76371982-76372001 | MS.gene049306:CDS | 50.0% |
| !! | CCAGGAGTGGGAATTTGTTG+CGG | - | chr3.1:76372708-76372727 | None:intergenic | 50.0% |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | chr3.1:76372246-76372265 | MS.gene049306:CDS | 50.0% |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | chr3.1:76371663-76371682 | None:intergenic | 50.0% |
| ACACCAGGAGCTGCTGGAAT+AGG | - | chr3.1:76372336-76372355 | None:intergenic | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | chr3.1:76370646-76370665 | None:intergenic | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | chr3.1:76371997-76372016 | MS.gene049306:CDS | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | chr3.1:76371841-76371860 | MS.gene049306:CDS | 55.0% | |
| CCGCAACAAATTCCCACTCC+TGG | + | chr3.1:76372705-76372724 | MS.gene049306:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | chr3.1:76371479-76371498 | None:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | chr3.1:76372199-76372218 | None:intergenic | 55.0% | |
| CTTTCAGTTGCAGGGGACTG+GGG | + | chr3.1:76372666-76372685 | MS.gene049306:intron | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr3.1:76371638-76371657 | None:intergenic | 55.0% | |
| GTAGGCCACTGACCATCAGA+TGG | - | chr3.1:76372276-76372295 | None:intergenic | 55.0% | |
| GTGGTCCATCTGATGGTCAG+TGG | + | chr3.1:76372268-76372287 | MS.gene049306:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | chr3.1:76372188-76372207 | MS.gene049306:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | chr3.1:76372198-76372217 | None:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | chr3.1:76370683-76370702 | MS.gene049306:CDS | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | chr3.1:76370626-76370645 | MS.gene049306:CDS | 55.0% | |
| ! | AGCAGCTCCTGGTGTCAACT+GGG | + | chr3.1:76372341-76372360 | MS.gene049306:CDS | 55.0% |
| !! | GGAGTGGGAATTTGTTGCGG+TGG | - | chr3.1:76372705-76372724 | None:intergenic | 55.0% |
| !! | GTGGGAATTTGTTGCGGTGG+TGG | - | chr3.1:76372702-76372721 | None:intergenic | 55.0% |
| !! | TGTGGTGCTGCATCAGTCCA+TGG | - | chr3.1:76372312-76372331 | None:intergenic | 55.0% |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | chr3.1:76372200-76372219 | MS.gene049306:CDS | 60.0% | |
| CAGCCTATTCCAGCAGCTCC+TGG | + | chr3.1:76372330-76372349 | MS.gene049306:CDS | 60.0% | |
| CAGTTGACACCAGGAGCTGC+TGG | - | chr3.1:76372342-76372361 | None:intergenic | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | chr3.1:76372197-76372216 | MS.gene049306:CDS | 60.0% | |
| CGTTGCAATCGAGAACCCCC+AGG | + | chr3.1:76371486-76371505 | MS.gene049306:CDS | 60.0% | |
| GGAGCTGCTGGAATAGGCTG+TGG | - | chr3.1:76372330-76372349 | None:intergenic | 60.0% | |
| ! | CAGCAGCTCCTGGTGTCAAC+TGG | + | chr3.1:76372340-76372359 | MS.gene049306:CDS | 60.0% |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | chr3.1:76370643-76370662 | None:intergenic | 60.0% |
| AACTGGGCTGCCCCAGAAGC+TGG | + | chr3.1:76372357-76372376 | MS.gene049306:CDS | 65.0% | |
| GGGGCAGCCCAGTTGACACC+AGG | - | chr3.1:76372351-76372370 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 76370563 | 76372761 | 76370563 | ID=MS.gene049306 |
| chr3.1 | mRNA | 76370563 | 76372761 | 76370563 | ID=MS.gene049306.t1;Parent=MS.gene049306 |
| chr3.1 | exon | 76370563 | 76370704 | 76370563 | ID=MS.gene049306.t1.exon1;Parent=MS.gene049306.t1 |
| chr3.1 | CDS | 76370563 | 76370704 | 76370563 | ID=cds.MS.gene049306.t1;Parent=MS.gene049306.t1 |
| chr3.1 | exon | 76371425 | 76371687 | 76371425 | ID=MS.gene049306.t1.exon2;Parent=MS.gene049306.t1 |
| chr3.1 | CDS | 76371425 | 76371687 | 76371425 | ID=cds.MS.gene049306.t1;Parent=MS.gene049306.t1 |
| chr3.1 | exon | 76371841 | 76372038 | 76371841 | ID=MS.gene049306.t1.exon3;Parent=MS.gene049306.t1 |
| chr3.1 | CDS | 76371841 | 76372038 | 76371841 | ID=cds.MS.gene049306.t1;Parent=MS.gene049306.t1 |
| chr3.1 | exon | 76372171 | 76372378 | 76372171 | ID=MS.gene049306.t1.exon4;Parent=MS.gene049306.t1 |
| chr3.1 | CDS | 76372171 | 76372378 | 76372171 | ID=cds.MS.gene049306.t1;Parent=MS.gene049306.t1 |
| chr3.1 | exon | 76372673 | 76372761 | 76372673 | ID=MS.gene049306.t1.exon5;Parent=MS.gene049306.t1 |
| chr3.1 | CDS | 76372673 | 76372761 | 76372673 | ID=cds.MS.gene049306.t1;Parent=MS.gene049306.t1 |
| Gene Sequence |
| Protein sequence |
