Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051925.t1 | XP_013450314.1 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 1.00E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051925.t1 | O65751 | 89.3 | 225 | 23 | 1 | 1 | 225 | 77 | 300 | 1.7e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051925.t1 | G8A187 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 7.5e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene051925 | 0.903382 | 3.68E-79 | -1.69E-46 |
| MS.gene049376 | MS.gene051925 | 0.816114 | 6.53E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene051925 | 0.82697 | 2.03E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene051925 | 0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene051828 | MS.gene051925 | 0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene051925 | MS.gene051927 | 0.981813 | 1.64E-153 | -1.69E-46 |
| MS.gene051925 | MS.gene052666 | 0.880461 | 5.39E-70 | -1.69E-46 |
| MS.gene051925 | MS.gene057321 | 0.838793 | 2.33E-57 | -1.69E-46 |
| MS.gene051925 | MS.gene059340 | 0.823422 | 1.40E-53 | -1.69E-46 |
| MS.gene051925 | MS.gene060483 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene051925 | MS.gene06169 | 0.801489 | 8.79E-49 | -1.69E-46 |
| MS.gene051925 | MS.gene062330 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene051925 | MS.gene06433 | 0.905649 | 3.43E-80 | -1.69E-46 |
| MS.gene051925 | MS.gene066811 | 0.805297 | 1.43E-49 | -1.69E-46 |
| MS.gene051925 | MS.gene066830 | 0.821647 | 3.61E-53 | -1.69E-46 |
| MS.gene051925 | MS.gene067331 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene051925 | MS.gene06999 | 0.905696 | 3.27E-80 | -1.69E-46 |
| MS.gene051925 | MS.gene072093 | 0.839693 | 1.36E-57 | -1.69E-46 |
| MS.gene051925 | MS.gene074400 | 0.87415 | 8.46E-68 | -1.69E-46 |
| MS.gene051925 | MS.gene08636 | 0.840715 | 7.36E-58 | -1.69E-46 |
| MS.gene051925 | MS.gene08869 | 0.879962 | 8.11E-70 | -1.69E-46 |
| MS.gene051925 | MS.gene08870 | 0.818146 | 2.28E-52 | -1.69E-46 |
| MS.gene051925 | MS.gene09038 | 0.917797 | 3.43E-86 | -1.69E-46 |
| MS.gene051925 | MS.gene09204 | 0.917211 | 7.00E-86 | -1.69E-46 |
| MS.gene051925 | MS.gene24887 | -0.809427 | 1.90E-50 | -1.69E-46 |
| MS.gene051925 | MS.gene25236 | 0.871826 | 5.08E-67 | -1.69E-46 |
| MS.gene051925 | MS.gene25240 | 0.992902 | 3.64E-196 | -1.69E-46 |
| MS.gene051925 | MS.gene25639 | 0.872374 | 3.34E-67 | -1.69E-46 |
| MS.gene051925 | MS.gene25649 | 0.995737 | 2.38E-219 | -1.69E-46 |
| MS.gene051925 | MS.gene25903 | 0.852297 | 5.06E-61 | -1.69E-46 |
| MS.gene051925 | MS.gene26792 | 0.897406 | 1.45E-76 | -1.69E-46 |
| MS.gene051925 | MS.gene27028 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene051925 | MS.gene30895 | 0.829157 | 6.02E-55 | -1.69E-46 |
| MS.gene051925 | MS.gene30990 | 0.911138 | 8.54E-83 | -1.69E-46 |
| MS.gene051925 | MS.gene31056 | 0.851439 | 8.87E-61 | -1.69E-46 |
| MS.gene051925 | MS.gene38035 | 0.855293 | 6.95E-62 | -1.69E-46 |
| MS.gene051925 | MS.gene40321 | 0.877352 | 6.73E-69 | -1.69E-46 |
| MS.gene051925 | MS.gene43038 | 0.819419 | 1.17E-52 | -1.69E-46 |
| MS.gene051925 | MS.gene55619 | 0.85404 | 1.60E-61 | -1.69E-46 |
| MS.gene051925 | MS.gene55890 | 0.81433 | 1.63E-51 | -1.69E-46 |
| MS.gene051925 | MS.gene58173 | 0.90894 | 9.86E-82 | -1.69E-46 |
| MS.gene051925 | MS.gene59228 | 0.852218 | 5.33E-61 | -1.69E-46 |
| MS.gene051925 | MS.gene62620 | 0.845829 | 3.18E-59 | -1.69E-46 |
| MS.gene051925 | MS.gene68140 | 0.828731 | 7.64E-55 | -1.69E-46 |
| MS.gene051925 | MS.gene70316 | 0.85771 | 1.36E-62 | -1.69E-46 |
| MS.gene051925 | MS.gene70579 | 0.853957 | 1.69E-61 | -1.69E-46 |
| MS.gene051925 | MS.gene70808 | 0.83608 | 1.15E-56 | -1.69E-46 |
| MS.gene051925 | MS.gene75309 | 0.874501 | 6.43E-68 | -1.69E-46 |
| MS.gene051925 | MS.gene75598 | 0.833544 | 5.02E-56 | -1.69E-46 |
| MS.gene051925 | MS.gene79721 | 0.841548 | 4.45E-58 | -1.69E-46 |
| MS.gene051925 | MS.gene80889 | 0.90566 | 3.39E-80 | -1.69E-46 |
| MS.gene051925 | MS.gene83062 | 0.827831 | 1.26E-54 | -1.69E-46 |
| MS.gene051925 | MS.gene88918 | 0.881252 | 2.80E-70 | -1.69E-46 |
| MS.gene051925 | MS.gene92142 | 0.87267 | 2.66E-67 | -1.69E-46 |
| MS.gene051925 | MS.gene95889 | 0.915159 | 8.19E-85 | -1.69E-46 |
| MS.gene051925 | MS.gene98171 | 0.84586 | 3.12E-59 | -1.69E-46 |
| MS.gene051925 | MS.gene98978 | 0.828219 | 1.02E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051925.t1 | MTR_7g107400 | 98.222 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 9.63e-165 | 456 |
| MS.gene051925.t1 | MTR_3g095810 | 91.111 | 225 | 18 | 2 | 1 | 225 | 77 | 299 | 2.42e-133 | 377 |
| MS.gene051925.t1 | MTR_3g095810 | 90.667 | 225 | 17 | 2 | 1 | 225 | 77 | 297 | 1.95e-132 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051925.t1 | AT3G04770 | 77.083 | 192 | 31 | 5 | 1 | 188 | 79 | 261 | 1.73e-98 | 288 |
| MS.gene051925.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.48e-96 | 283 |
| MS.gene051925.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.94e-96 | 283 |
| MS.gene051925.t1 | AT3G04770 | 91.339 | 127 | 11 | 0 | 1 | 127 | 79 | 205 | 4.50e-82 | 248 |
Find 77 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 7.1:-5969203 | MS.gene051925:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | 7.1:+5967704 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 7.1:+5968242 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 7.1:-5969239 | MS.gene051925:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 7.1:+5968155 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 7.1:-5967733 | MS.gene051925:CDS |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 7.1:+5967881 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 7.1:+5968151 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 7.1:-5968133 | MS.gene051925:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 7.1:+5967768 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 7.1:+5967354 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 7.1:+5969086 | None:intergenic |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 7.1:+5967322 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 7.1:+5967799 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 7.1:+5969109 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 7.1:+5967800 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 7.1:-5969185 | MS.gene051925:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 7.1:-5968242 | MS.gene051925:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 7.1:+5968063 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 7.1:+5967359 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | 7.1:+5967705 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 7.1:+5967740 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 7.1:+5967318 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 7.1:+5967900 | None:intergenic |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 7.1:+5969139 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 7.1:-5967325 | MS.gene051925:CDS |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 7.1:+5967734 | None:intergenic |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 7.1:-5969090 | MS.gene051925:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 7.1:+5967839 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 7.1:-5968076 | MS.gene051925:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 7.1:-5967830 | MS.gene051925:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 7.1:-5967329 | MS.gene051925:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 7.1:+5968212 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | 7.1:-5967716 | MS.gene051925:intron |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 7.1:+5967335 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 7.1:+5967746 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | 7.1:+5967725 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 7.1:+5967353 | None:intergenic |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 7.1:-5967732 | MS.gene051925:CDS |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 7.1:+5967782 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 7.1:-5967353 | MS.gene051925:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 7.1:-5968255 | MS.gene051925:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 7.1:+5968068 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 7.1:+5969224 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 7.1:+5968156 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 7.1:-5967403 | MS.gene051925:intron |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 7.1:-5967812 | MS.gene051925:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 7.1:+5968076 | None:intergenic |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 7.1:-5967888 | MS.gene051925:CDS |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 7.1:+5967845 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 7.1:-5968146 | MS.gene051925:CDS |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 7.1:-5968066 | MS.gene051925:intron |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.556515 | 7.1:-5967402 | MS.gene051925:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 7.1:-5967781 | MS.gene051925:CDS |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | 7.1:+5967706 | None:intergenic |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 7.1:+5967341 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 7.1:+5969152 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 7.1:-5969170 | MS.gene051925:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 7.1:-5968182 | MS.gene051925:CDS |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 7.1:-5968086 | MS.gene051925:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 7.1:-5969127 | MS.gene051925:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 7.1:+5967355 | None:intergenic |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 7.1:+5969178 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 7.1:-5967879 | MS.gene051925:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 7.1:-5967324 | MS.gene051925:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 7.1:-5968162 | MS.gene051925:CDS |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 7.1:+5969110 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 7.1:+5968069 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 7.1:-5968075 | MS.gene051925:CDS |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 7.1:-5968161 | MS.gene051925:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 7.1:-5968101 | MS.gene051925:CDS |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.624967 | 7.1:-5967401 | MS.gene051925:intron |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 7.1:-5969181 | MS.gene051925:CDS |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 7.1:-5967805 | MS.gene051925:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 7.1:+5967801 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 7.1:+5968182 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 7.1:+5969096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr7.1:5968267-5968286 | MS.gene051925:intron | 10.0% |
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr7.1:5967762-5967781 | None:intergenic | 10.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr7.1:5968096-5968115 | None:intergenic | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr7.1:5967665-5967684 | None:intergenic | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr7.1:5967639-5967658 | MS.gene051925:intron | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | chr7.1:5968524-5968543 | MS.gene051925:intron | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr7.1:5968102-5968121 | MS.gene051925:CDS | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | chr7.1:5967810-5967829 | MS.gene051925:CDS | 15.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | chr7.1:5969043-5969062 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr7.1:5967990-5968009 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr7.1:5967713-5967732 | None:intergenic | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr7.1:5967666-5967685 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr7.1:5968044-5968063 | None:intergenic | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr7.1:5967989-5968008 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | chr7.1:5967809-5967828 | MS.gene051925:CDS | 20.0% |
| !!! | TATCGCGTTTTAAAAAATTT+AGG | - | chr7.1:5968885-5968904 | MS.gene051925:intron | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | chr7.1:5967811-5967830 | MS.gene051925:CDS | 20.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | chr7.1:5969042-5969061 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | chr7.1:5969044-5969063 | None:intergenic | 25.0% |
| !! | ACATTTATTTCGTTAACTTG+TGG | - | chr7.1:5969044-5969063 | MS.gene051925:intron | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr7.1:5969070-5969089 | MS.gene051925:intron | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr7.1:5969069-5969088 | MS.gene051925:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr7.1:5967533-5967552 | MS.gene051925:intron | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr7.1:5967532-5967551 | MS.gene051925:intron | 25.0% |
| AAACTTTGCACAAAAACCAA+TGG | + | chr7.1:5967950-5967969 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr7.1:5967949-5967968 | None:intergenic | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr7.1:5968728-5968747 | None:intergenic | 30.0% | |
| AAGTGCTTATATAGGATATG+AGG | + | chr7.1:5968036-5968055 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr7.1:5968111-5968130 | MS.gene051925:CDS | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr7.1:5968933-5968952 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr7.1:5968934-5968953 | None:intergenic | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr7.1:5968621-5968640 | MS.gene051925:intron | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr7.1:5968620-5968639 | MS.gene051925:intron | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr7.1:5969071-5969090 | MS.gene051925:intron | 30.0% |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr7.1:5967973-5967992 | MS.gene051925:intron | 30.0% |
| AAGCACTTGTAAACCAACTT+GGG | + | chr7.1:5968178-5968197 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr7.1:5967887-5967906 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr7.1:5968232-5968251 | None:intergenic | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr7.1:5969003-5969022 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr7.1:5967948-5967967 | None:intergenic | 35.0% | |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr7.1:5968951-5968970 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr7.1:5968988-5969007 | MS.gene051925:intron | 35.0% | |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr7.1:5968667-5968686 | None:intergenic | 35.0% | |
| GAATGAAACTTGCATCTGAT+TGG | + | chr7.1:5967428-5967447 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr7.1:5968227-5968246 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr7.1:5968355-5968374 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr7.1:5968179-5968198 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr7.1:5967888-5967907 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr7.1:5968431-5968450 | MS.gene051925:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr7.1:5968566-5968585 | MS.gene051925:intron | 35.0% |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr7.1:5967361-5967380 | MS.gene051925:CDS | 35.0% |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr7.1:5968667-5968686 | MS.gene051925:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr7.1:5967415-5967434 | None:intergenic | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr7.1:5968734-5968753 | MS.gene051925:intron | 35.0% |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr7.1:5967650-5967669 | MS.gene051925:intron | 35.0% |
| AATGCCAATGACAGGATTAG+AGG | + | chr7.1:5968995-5969014 | None:intergenic | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr7.1:5968240-5968259 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr7.1:5968977-5968996 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr7.1:5967820-5967839 | MS.gene051925:CDS | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr7.1:5967481-5967500 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr7.1:5968799-5968818 | None:intergenic | 40.0% | |
| GTAATAGCATAATCTGGTGC+AGG | + | chr7.1:5968722-5968741 | None:intergenic | 40.0% | |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr7.1:5967325-5967344 | MS.gene051925:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr7.1:5967474-5967493 | MS.gene051925:intron | 40.0% | |
| TTACCATGACATCCCACTTA+AGG | + | chr7.1:5968504-5968523 | None:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr7.1:5968670-5968689 | MS.gene051925:intron | 40.0% |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr7.1:5968637-5968656 | MS.gene051925:intron | 40.0% |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr7.1:5968438-5968457 | MS.gene051925:intron | 40.0% |
| AAACCTGCCAATTCAACCGA+TGG | + | chr7.1:5968602-5968621 | None:intergenic | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr7.1:5968418-5968437 | MS.gene051925:intron | 45.0% | |
| AACCTGCCAATTCAACCGAT+GGG | + | chr7.1:5968601-5968620 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr7.1:5967437-5967456 | MS.gene051925:intron | 45.0% | |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr7.1:5967343-5967362 | None:intergenic | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr7.1:5969161-5969180 | MS.gene051925:CDS | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr7.1:5967458-5967477 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr7.1:5968863-5968882 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr7.1:5968583-5968602 | MS.gene051925:intron | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr7.1:5967940-5967959 | None:intergenic | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr7.1:5968385-5968404 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr7.1:5968382-5968401 | MS.gene051925:intron | 45.0% | |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr7.1:5968173-5968192 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr7.1:5967471-5967490 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr7.1:5969160-5969179 | MS.gene051925:CDS | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr7.1:5967457-5967476 | None:intergenic | 45.0% | |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr7.1:5968862-5968881 | None:intergenic | 45.0% | |
| TGGGGAACAATTGCCACATA+TGG | + | chr7.1:5968582-5968601 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr7.1:5968309-5968328 | MS.gene051925:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr7.1:5968592-5968611 | MS.gene051925:intron | 45.0% |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr7.1:5969212-5969231 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr7.1:5969213-5969232 | None:intergenic | 45.0% |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr7.1:5968759-5968778 | MS.gene051925:intron | 45.0% |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr7.1:5968443-5968462 | MS.gene051925:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr7.1:5968447-5968466 | MS.gene051925:intron | 45.0% |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr7.1:5968827-5968846 | None:intergenic | 50.0% | |
| ACCTGCCAATTCAACCGATG+GGG | + | chr7.1:5968600-5968619 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr7.1:5968768-5968787 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr7.1:5968832-5968851 | MS.gene051925:intron | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr7.1:5968499-5968518 | None:intergenic | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr7.1:5969163-5969182 | MS.gene051925:CDS | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr7.1:5968766-5968785 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr7.1:5968785-5968804 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr7.1:5968325-5968344 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr7.1:5968322-5968341 | MS.gene051925:intron | 50.0% | |
| CCACAACAAATACCTGCTCC+TGG | - | chr7.1:5969211-5969230 | MS.gene051925:CDS | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | chr7.1:5968861-5968880 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr7.1:5968783-5968802 | MS.gene051925:intron | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr7.1:5969162-5969181 | MS.gene051925:CDS | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr7.1:5968767-5968786 | None:intergenic | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr7.1:5968752-5968771 | MS.gene051925:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr7.1:5968403-5968422 | MS.gene051925:intron | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr7.1:5967931-5967950 | MS.gene051925:intron | 50.0% | |
| GTCTTAAGCCTCTCCCAAGT+TGG | - | chr7.1:5968162-5968181 | MS.gene051925:CDS | 50.0% | |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr7.1:5967383-5967402 | MS.gene051925:CDS | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr7.1:5967389-5967408 | None:intergenic | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr7.1:5969235-5969254 | MS.gene051925:CDS | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr7.1:5968676-5968695 | MS.gene051925:intron | 50.0% | |
| TGACATCCCACTTAAGGCCA+GGG | + | chr7.1:5968498-5968517 | None:intergenic | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr7.1:5968402-5968421 | MS.gene051925:intron | 50.0% | |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr7.1:5967379-5967398 | MS.gene051925:CDS | 50.0% |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr7.1:5968416-5968435 | None:intergenic | 50.0% |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr7.1:5969214-5969233 | None:intergenic | 50.0% |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr7.1:5968498-5968517 | MS.gene051925:intron | 50.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr7.1:5969239-5969258 | MS.gene051925:CDS | 55.0% | |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr7.1:5969226-5969245 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr7.1:5968831-5968850 | MS.gene051925:intron | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr7.1:5968833-5968852 | None:intergenic | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr7.1:5968821-5968840 | None:intergenic | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr7.1:5969240-5969259 | MS.gene051925:CDS | 55.0% | |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr7.1:5968686-5968705 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr7.1:5968685-5968704 | MS.gene051925:intron | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr7.1:5969245-5969264 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr7.1:5969232-5969251 | None:intergenic | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr7.1:5968596-5968615 | MS.gene051925:intron | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr7.1:5968463-5968482 | MS.gene051925:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr7.1:5968489-5968508 | MS.gene051925:intron | 55.0% |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr7.1:5969208-5969227 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr7.1:5968411-5968430 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr7.1:5968412-5968431 | None:intergenic | 55.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr7.1:5968478-5968497 | MS.gene051925:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr7.1:5968491-5968510 | None:intergenic | 60.0% | |
| TGCAGCTGCAGGGGGTGATT+GGG | - | chr7.1:5969171-5969190 | MS.gene051925:CDS | 60.0% | |
| TTGCAGCTGCAGGGGGTGAT+TGG | - | chr7.1:5969170-5969189 | MS.gene051925:CDS | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr7.1:5967394-5967413 | MS.gene051925:intron | 60.0% |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr7.1:5968488-5968507 | MS.gene051925:intron | 60.0% |
| AACTGGGCAGCCCCAGAAGC+TGG | - | chr7.1:5968848-5968867 | MS.gene051925:intron | 65.0% | |
| GCAGCTGCAGGGGGTGATTG+GGG | - | chr7.1:5969172-5969191 | MS.gene051925:CDS | 65.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | chr7.1:5968842-5968861 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5967319 | 5969267 | 5967319 | ID=MS.gene051925 |
| chr7.1 | mRNA | 5967319 | 5969267 | 5967319 | ID=MS.gene051925.t1;Parent=MS.gene051925 |
| chr7.1 | exon | 5969091 | 5969267 | 5969091 | ID=MS.gene051925.t1.exon1;Parent=MS.gene051925.t1 |
| chr7.1 | CDS | 5969091 | 5969267 | 5969091 | ID=cds.MS.gene051925.t1;Parent=MS.gene051925.t1 |
| chr7.1 | exon | 5968067 | 5968264 | 5968067 | ID=MS.gene051925.t1.exon2;Parent=MS.gene051925.t1 |
| chr7.1 | CDS | 5968067 | 5968264 | 5968067 | ID=cds.MS.gene051925.t1;Parent=MS.gene051925.t1 |
| chr7.1 | exon | 5967717 | 5967927 | 5967717 | ID=MS.gene051925.t1.exon3;Parent=MS.gene051925.t1 |
| chr7.1 | CDS | 5967717 | 5967927 | 5967717 | ID=cds.MS.gene051925.t1;Parent=MS.gene051925.t1 |
| chr7.1 | exon | 5967319 | 5967410 | 5967319 | ID=MS.gene051925.t1.exon4;Parent=MS.gene051925.t1 |
| chr7.1 | CDS | 5967319 | 5967410 | 5967319 | ID=cds.MS.gene051925.t1;Parent=MS.gene051925.t1 |
| Gene Sequence |
| Protein sequence |
