Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051927.t1 | XP_013450314.1 | 95.6 | 229 | 6 | 1 | 1 | 229 | 73 | 297 | 3.70E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051927.t1 | O65751 | 86.5 | 229 | 26 | 1 | 1 | 229 | 77 | 300 | 9.4e-116 | 417.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051927.t1 | G8A187 | 95.6 | 229 | 6 | 1 | 1 | 229 | 73 | 297 | 2.7e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene051927 | 0.905464 | 4.18E-80 | -1.69E-46 |
| MS.gene049376 | MS.gene051927 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene051793 | MS.gene051927 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene051828 | MS.gene051927 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene051925 | MS.gene051927 | 0.981813 | 1.64E-153 | -1.69E-46 |
| MS.gene051927 | MS.gene052666 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene051927 | MS.gene057321 | 0.81656 | 5.19E-52 | -1.69E-46 |
| MS.gene051927 | MS.gene062330 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene051927 | MS.gene06433 | 0.903867 | 2.22E-79 | -1.69E-46 |
| MS.gene051927 | MS.gene066830 | 0.830569 | 2.73E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene068775 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene051927 | MS.gene06999 | 0.873675 | 1.22E-67 | -1.69E-46 |
| MS.gene051927 | MS.gene072093 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene051927 | MS.gene074400 | 0.858933 | 5.86E-63 | -1.69E-46 |
| MS.gene051927 | MS.gene08636 | 0.830724 | 2.50E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene08869 | 0.853511 | 2.28E-61 | -1.69E-46 |
| MS.gene051927 | MS.gene09038 | 0.885005 | 1.18E-71 | -1.69E-46 |
| MS.gene051927 | MS.gene09204 | 0.883772 | 3.38E-71 | -1.69E-46 |
| MS.gene051927 | MS.gene25236 | 0.856714 | 2.67E-62 | -1.69E-46 |
| MS.gene051927 | MS.gene25240 | 0.987902 | 5.80E-172 | -1.69E-46 |
| MS.gene051927 | MS.gene25639 | 0.858577 | 7.49E-63 | -1.69E-46 |
| MS.gene051927 | MS.gene25649 | 0.985907 | 4.77E-165 | -1.69E-46 |
| MS.gene051927 | MS.gene25903 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene051927 | MS.gene26792 | 0.897407 | 1.45E-76 | -1.69E-46 |
| MS.gene051927 | MS.gene30895 | 0.852316 | 5.00E-61 | -1.69E-46 |
| MS.gene051927 | MS.gene30990 | 0.908033 | 2.66E-81 | -1.69E-46 |
| MS.gene051927 | MS.gene31056 | 0.846233 | 2.47E-59 | -1.69E-46 |
| MS.gene051927 | MS.gene38035 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene051927 | MS.gene40321 | 0.878746 | 2.19E-69 | -1.69E-46 |
| MS.gene051927 | MS.gene42019 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene051927 | MS.gene43038 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene051927 | MS.gene55619 | 0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene051927 | MS.gene58173 | 0.883139 | 5.78E-71 | -1.69E-46 |
| MS.gene051927 | MS.gene59228 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene051927 | MS.gene62620 | 0.842829 | 2.04E-58 | -1.69E-46 |
| MS.gene051927 | MS.gene68140 | 0.812115 | 4.99E-51 | -1.69E-46 |
| MS.gene051927 | MS.gene70316 | 0.819919 | 9.02E-53 | -1.69E-46 |
| MS.gene051927 | MS.gene70579 | 0.823869 | 1.10E-53 | -1.69E-46 |
| MS.gene051927 | MS.gene70808 | 0.833169 | 6.22E-56 | -1.69E-46 |
| MS.gene051927 | MS.gene75309 | 0.888819 | 4.21E-73 | -1.69E-46 |
| MS.gene051927 | MS.gene75598 | 0.843021 | 1.81E-58 | -1.69E-46 |
| MS.gene051927 | MS.gene79721 | 0.820394 | 7.02E-53 | -1.69E-46 |
| MS.gene051927 | MS.gene80889 | 0.898483 | 5.08E-77 | -1.69E-46 |
| MS.gene051927 | MS.gene83062 | 0.819888 | 9.17E-53 | -1.69E-46 |
| MS.gene051927 | MS.gene88918 | 0.859424 | 4.18E-63 | -1.69E-46 |
| MS.gene051927 | MS.gene92142 | 0.856664 | 2.76E-62 | -1.69E-46 |
| MS.gene051927 | MS.gene93325 | 0.809217 | 2.11E-50 | -1.69E-46 |
| MS.gene051927 | MS.gene95889 | 0.913886 | 3.66E-84 | -1.69E-46 |
| MS.gene051927 | MS.gene98171 | 0.824874 | 6.37E-54 | -1.69E-46 |
| MS.gene051927 | MS.gene98978 | 0.807959 | 3.92E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051927.t1 | MTR_7g107400 | 95.633 | 229 | 6 | 1 | 1 | 229 | 73 | 297 | 8.24e-161 | 446 |
| MS.gene051927.t1 | MTR_3g095810 | 88.210 | 229 | 21 | 2 | 1 | 229 | 77 | 299 | 5.99e-130 | 369 |
| MS.gene051927.t1 | MTR_3g095810 | 87.773 | 229 | 20 | 2 | 1 | 229 | 77 | 297 | 2.83e-129 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051927.t1 | AT3G04770 | 77.083 | 192 | 31 | 5 | 1 | 188 | 79 | 261 | 2.40e-98 | 288 |
| MS.gene051927.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.90e-96 | 283 |
| MS.gene051927.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 2.17e-96 | 283 |
| MS.gene051927.t1 | AT3G04770 | 91.339 | 127 | 11 | 0 | 1 | 127 | 79 | 205 | 7.99e-82 | 248 |
Find 77 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 7.1:-5938443 | MS.gene051927:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.268097 | 7.1:+5936947 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 7.1:+5937484 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 7.1:-5938479 | MS.gene051927:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 7.1:+5937397 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 7.1:-5936975 | MS.gene051927:CDS |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 7.1:+5937123 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 7.1:+5937393 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 7.1:-5937375 | MS.gene051927:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 7.1:+5937010 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 7.1:+5936600 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 7.1:+5938326 | None:intergenic |
| TAGATTTGTCTTGCAGCTGC+AGG | 0.404737 | 7.1:-5936650 | MS.gene051927:CDS |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 7.1:+5936568 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 7.1:+5937041 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 7.1:+5938349 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 7.1:+5937042 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 7.1:-5938425 | MS.gene051927:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 7.1:-5937484 | MS.gene051927:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 7.1:+5937305 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 7.1:+5936605 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 7.1:+5936982 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 7.1:+5936564 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 7.1:+5937142 | None:intergenic |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 7.1:+5938379 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 7.1:-5936571 | MS.gene051927:CDS |
| TCGATCAAGTACCAGCTTCT+GGG | 0.456752 | 7.1:+5936948 | None:intergenic |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 7.1:+5936976 | None:intergenic |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 7.1:-5938330 | MS.gene051927:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 7.1:+5937081 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 7.1:-5937318 | MS.gene051927:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 7.1:-5937072 | MS.gene051927:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 7.1:-5936575 | MS.gene051927:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 7.1:+5937454 | None:intergenic |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 7.1:+5936581 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 7.1:+5936988 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 7.1:+5936599 | None:intergenic |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 7.1:-5936974 | MS.gene051927:CDS |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 7.1:+5937024 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 7.1:-5936599 | MS.gene051927:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 7.1:-5937497 | MS.gene051927:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 7.1:+5937310 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 7.1:+5938464 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 7.1:+5937398 | None:intergenic |
| TGGGCTGCCCAGTTGACAGC+AGG | 0.517027 | 7.1:+5936967 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 7.1:-5936649 | MS.gene051927:CDS |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 7.1:-5937054 | MS.gene051927:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 7.1:+5937318 | None:intergenic |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 7.1:-5937130 | MS.gene051927:CDS |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 7.1:+5937087 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 7.1:-5937388 | MS.gene051927:CDS |
| CAACTGGGCAGCCCAGAAGC+TGG | 0.552277 | 7.1:-5936959 | MS.gene051927:intron |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 7.1:-5937308 | MS.gene051927:intron |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.556515 | 7.1:-5936648 | MS.gene051927:CDS |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 7.1:-5937023 | MS.gene051927:CDS |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 7.1:+5936587 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 7.1:+5938392 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 7.1:-5938410 | MS.gene051927:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 7.1:-5937424 | MS.gene051927:CDS |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 7.1:-5937328 | MS.gene051927:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 7.1:-5938367 | MS.gene051927:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 7.1:+5936601 | None:intergenic |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 7.1:+5938418 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 7.1:-5937121 | MS.gene051927:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 7.1:-5936570 | MS.gene051927:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 7.1:-5937404 | MS.gene051927:CDS |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 7.1:+5938350 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 7.1:+5937311 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 7.1:-5937317 | MS.gene051927:CDS |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 7.1:-5937403 | MS.gene051927:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 7.1:-5937343 | MS.gene051927:CDS |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.624967 | 7.1:-5936647 | MS.gene051927:CDS |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 7.1:-5938421 | MS.gene051927:CDS |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 7.1:-5937047 | MS.gene051927:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 7.1:+5937043 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 7.1:+5937424 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 7.1:+5938336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr7.1:5937511-5937530 | MS.gene051927:intron | 10.0% |
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr7.1:5937008-5937027 | None:intergenic | 10.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr7.1:5937341-5937360 | None:intergenic | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr7.1:5936911-5936930 | None:intergenic | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr7.1:5936885-5936904 | MS.gene051927:intron | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | chr7.1:5937768-5937787 | MS.gene051927:intron | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr7.1:5937347-5937366 | MS.gene051927:CDS | 15.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr7.1:5937235-5937254 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr7.1:5936959-5936978 | None:intergenic | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr7.1:5936912-5936931 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr7.1:5937289-5937308 | None:intergenic | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr7.1:5937234-5937253 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTTATGTTATTG+TGG | - | chr7.1:5937054-5937073 | MS.gene051927:CDS | 20.0% |
| !!! | GTTGTTTTTTATGTTATTGT+GGG | - | chr7.1:5937055-5937074 | MS.gene051927:CDS | 20.0% |
| !!! | TTGTTTTTTATGTTATTGTG+GGG | - | chr7.1:5937056-5937075 | MS.gene051927:CDS | 20.0% |
| ! | AAGTAACGAAATAAATGTTG+GGG | + | chr7.1:5938284-5938303 | None:intergenic | 25.0% |
| ! | ACAAGTAACGAAATAAATGT+TGG | + | chr7.1:5938286-5938305 | None:intergenic | 25.0% |
| ! | CAAGTAACGAAATAAATGTT+GGG | + | chr7.1:5938285-5938304 | None:intergenic | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr7.1:5938310-5938329 | MS.gene051927:intron | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr7.1:5938309-5938328 | MS.gene051927:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr7.1:5936779-5936798 | MS.gene051927:intron | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr7.1:5936778-5936797 | MS.gene051927:intron | 25.0% |
| AAACTTTGCACAAAAACCAA+TGG | + | chr7.1:5937195-5937214 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr7.1:5937194-5937213 | None:intergenic | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr7.1:5937972-5937991 | None:intergenic | 30.0% | |
| AAGTGCTTATATAGGATATG+AGG | + | chr7.1:5937281-5937300 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr7.1:5937356-5937375 | MS.gene051927:CDS | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr7.1:5938175-5938194 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr7.1:5938176-5938195 | None:intergenic | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr7.1:5937865-5937884 | MS.gene051927:intron | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr7.1:5937864-5937883 | MS.gene051927:intron | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr7.1:5938311-5938330 | MS.gene051927:intron | 30.0% |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr7.1:5937218-5937237 | MS.gene051927:intron | 30.0% |
| AAGCACTTGTAAACCAACTT+GGG | + | chr7.1:5937423-5937442 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr7.1:5937132-5937151 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr7.1:5937476-5937495 | None:intergenic | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr7.1:5938245-5938264 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr7.1:5937193-5937212 | None:intergenic | 35.0% | |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr7.1:5938193-5938212 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr7.1:5938230-5938249 | MS.gene051927:intron | 35.0% | |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr7.1:5937911-5937930 | None:intergenic | 35.0% | |
| GAATGAAACTTGCATCTGAT+TGG | + | chr7.1:5936674-5936693 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr7.1:5937471-5937490 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr7.1:5937599-5937618 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr7.1:5937424-5937443 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr7.1:5937133-5937152 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr7.1:5937675-5937694 | MS.gene051927:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr7.1:5937810-5937829 | MS.gene051927:intron | 35.0% |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr7.1:5936607-5936626 | MS.gene051927:CDS | 35.0% |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr7.1:5937911-5937930 | MS.gene051927:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr7.1:5936661-5936680 | None:intergenic | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr7.1:5937978-5937997 | MS.gene051927:intron | 35.0% |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr7.1:5936896-5936915 | MS.gene051927:intron | 35.0% |
| AATGCCAATGACAGGATTAG+AGG | + | chr7.1:5938237-5938256 | None:intergenic | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr7.1:5937484-5937503 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr7.1:5938219-5938238 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr7.1:5937065-5937084 | MS.gene051927:CDS | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr7.1:5936727-5936746 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr7.1:5938043-5938062 | None:intergenic | 40.0% | |
| GTAATAGCATAATCTGGTGC+AGG | + | chr7.1:5937966-5937985 | None:intergenic | 40.0% | |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr7.1:5936571-5936590 | MS.gene051927:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr7.1:5936720-5936739 | MS.gene051927:intron | 40.0% | |
| TTACCATGACATCCCACTTA+AGG | + | chr7.1:5937748-5937767 | None:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr7.1:5937914-5937933 | MS.gene051927:intron | 40.0% |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr7.1:5937881-5937900 | MS.gene051927:intron | 40.0% |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr7.1:5937682-5937701 | MS.gene051927:intron | 40.0% |
| AAACCTGCCAATTCAACCGA+TGG | + | chr7.1:5937846-5937865 | None:intergenic | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr7.1:5937662-5937681 | MS.gene051927:intron | 45.0% | |
| AACCTGCCAATTCAACCGAT+GGG | + | chr7.1:5937845-5937864 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr7.1:5936683-5936702 | MS.gene051927:intron | 45.0% | |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr7.1:5936589-5936608 | None:intergenic | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr7.1:5938401-5938420 | MS.gene051927:CDS | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr7.1:5936704-5936723 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr7.1:5938106-5938125 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr7.1:5937827-5937846 | MS.gene051927:intron | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr7.1:5937185-5937204 | None:intergenic | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr7.1:5937629-5937648 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr7.1:5937626-5937645 | MS.gene051927:intron | 45.0% | |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr7.1:5937418-5937437 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr7.1:5936717-5936736 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr7.1:5938400-5938419 | MS.gene051927:CDS | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr7.1:5936703-5936722 | None:intergenic | 45.0% | |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr7.1:5938105-5938124 | None:intergenic | 45.0% | |
| TGGGGAACAATTGCCACATA+TGG | + | chr7.1:5937826-5937845 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr7.1:5937553-5937572 | MS.gene051927:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr7.1:5937836-5937855 | MS.gene051927:intron | 45.0% |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr7.1:5938452-5938471 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr7.1:5938453-5938472 | None:intergenic | 45.0% |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr7.1:5938003-5938022 | MS.gene051927:intron | 45.0% |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr7.1:5937687-5937706 | MS.gene051927:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr7.1:5937691-5937710 | MS.gene051927:intron | 45.0% |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr7.1:5938071-5938090 | None:intergenic | 50.0% | |
| ACCTGCCAATTCAACCGATG+GGG | + | chr7.1:5937844-5937863 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr7.1:5938012-5938031 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr7.1:5938076-5938095 | MS.gene051927:intron | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr7.1:5937743-5937762 | None:intergenic | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr7.1:5938403-5938422 | MS.gene051927:CDS | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr7.1:5938010-5938029 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr7.1:5938029-5938048 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr7.1:5937569-5937588 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr7.1:5937566-5937585 | MS.gene051927:intron | 50.0% | |
| CCACAACAAATACCTGCTCC+TGG | - | chr7.1:5938451-5938470 | MS.gene051927:CDS | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr7.1:5938027-5938046 | MS.gene051927:intron | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr7.1:5938402-5938421 | MS.gene051927:CDS | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr7.1:5938011-5938030 | None:intergenic | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr7.1:5937996-5938015 | MS.gene051927:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr7.1:5937647-5937666 | MS.gene051927:intron | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr7.1:5937176-5937195 | MS.gene051927:intron | 50.0% | |
| GTCTTAAGCCTCTCCCAAGT+TGG | - | chr7.1:5937407-5937426 | MS.gene051927:CDS | 50.0% | |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr7.1:5936629-5936648 | MS.gene051927:CDS | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr7.1:5936635-5936654 | None:intergenic | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr7.1:5938475-5938494 | MS.gene051927:CDS | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr7.1:5937920-5937939 | MS.gene051927:intron | 50.0% | |
| TGACATCCCACTTAAGGCCA+GGG | + | chr7.1:5937742-5937761 | None:intergenic | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr7.1:5937646-5937665 | MS.gene051927:intron | 50.0% | |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr7.1:5936625-5936644 | MS.gene051927:CDS | 50.0% |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr7.1:5937660-5937679 | None:intergenic | 50.0% |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr7.1:5938454-5938473 | None:intergenic | 50.0% |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr7.1:5937742-5937761 | MS.gene051927:intron | 50.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr7.1:5938479-5938498 | MS.gene051927:CDS | 55.0% | |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr7.1:5938466-5938485 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr7.1:5938075-5938094 | MS.gene051927:intron | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr7.1:5938077-5938096 | None:intergenic | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr7.1:5938065-5938084 | None:intergenic | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr7.1:5938480-5938499 | MS.gene051927:CDS | 55.0% | |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr7.1:5937930-5937949 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr7.1:5937929-5937948 | MS.gene051927:intron | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr7.1:5938485-5938504 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr7.1:5938472-5938491 | None:intergenic | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr7.1:5937840-5937859 | MS.gene051927:intron | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr7.1:5937707-5937726 | MS.gene051927:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr7.1:5937733-5937752 | MS.gene051927:intron | 55.0% |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr7.1:5938448-5938467 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr7.1:5937655-5937674 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr7.1:5937656-5937675 | None:intergenic | 55.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr7.1:5937722-5937741 | MS.gene051927:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr7.1:5937735-5937754 | None:intergenic | 60.0% | |
| TGCAGCTGCAGGGGGTGATT+GGG | - | chr7.1:5938411-5938430 | MS.gene051927:CDS | 60.0% | |
| TTGCAGCTGCAGGGGGTGAT+TGG | - | chr7.1:5938410-5938429 | MS.gene051927:CDS | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr7.1:5936640-5936659 | MS.gene051927:CDS | 60.0% |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr7.1:5937732-5937751 | MS.gene051927:intron | 60.0% |
| CAACTGGGCAGCCCAGAAGC+TGG | - | chr7.1:5938091-5938110 | MS.gene051927:intron | 65.0% | |
| GCAGCTGCAGGGGGTGATTG+GGG | - | chr7.1:5938412-5938431 | MS.gene051927:CDS | 65.0% | |
| TGGGCTGCCCAGTTGACAGC+AGG | + | chr7.1:5938086-5938105 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5936565 | 5938507 | 5936565 | ID=MS.gene051927 |
| chr7.1 | mRNA | 5936565 | 5938507 | 5936565 | ID=MS.gene051927.t1;Parent=MS.gene051927 |
| chr7.1 | exon | 5938331 | 5938507 | 5938331 | ID=MS.gene051927.t1.exon1;Parent=MS.gene051927.t1 |
| chr7.1 | CDS | 5938331 | 5938507 | 5938331 | ID=cds.MS.gene051927.t1;Parent=MS.gene051927.t1 |
| chr7.1 | exon | 5937309 | 5937506 | 5937309 | ID=MS.gene051927.t1.exon2;Parent=MS.gene051927.t1 |
| chr7.1 | CDS | 5937309 | 5937506 | 5937309 | ID=cds.MS.gene051927.t1;Parent=MS.gene051927.t1 |
| chr7.1 | exon | 5936960 | 5937169 | 5936960 | ID=MS.gene051927.t1.exon3;Parent=MS.gene051927.t1 |
| chr7.1 | CDS | 5936960 | 5937169 | 5936960 | ID=cds.MS.gene051927.t1;Parent=MS.gene051927.t1 |
| chr7.1 | exon | 5936565 | 5936669 | 5936565 | ID=MS.gene051927.t1.exon4;Parent=MS.gene051927.t1 |
| chr7.1 | CDS | 5936565 | 5936669 | 5936565 | ID=cds.MS.gene051927.t1;Parent=MS.gene051927.t1 |
| Gene Sequence |
| Protein sequence |
