AlfalfaGEDB | MS.gene68191

M. sativa cultivar XinJiangDaYe / MS.gene68191

KEGG: -
GO: GO:0001101 GO:0008150 GO:0009415 GO:0009628 GO:0010035 GO:0042221 GO:0050896 GO:1901700
PFAM: PF00257.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68191.t1	ADD09608.1	71.4	224	31	6	1	197	1	218	9.60E-44	186.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68191.t1	P42763	46.7	90	31	4	1	86	1	77	6.2e-07	55.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68191.t1	D3YBF7	71.4	224	31	6	1	197	1	218	6.9e-44	186.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene68785	MS.gene68191	PPI
MS.gene063134	MS.gene68191	PPI
MS.gene014249	MS.gene68191	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68191.t1	MTR_3g117290	72.398	221	25	7	1	197	1	209	2.74e-71	215

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68191.t1	AT1G76180	44.000	200	76	6	1	184	1	180	1.39e-23	92.8
MS.gene68191.t1	AT1G76180	44.000	200	76	6	1	184	1	180	1.39e-23	92.8
MS.gene68191.t1	AT1G20440	42.233	206	81	11	1	176	1	198	1.42e-19	84.0
MS.gene68191.t1	AT1G20450	36.321	212	87	10	1	175	1	201	3.06e-15	72.4
MS.gene68191.t1	AT1G20450	54.667	75	28	2	110	184	185	253	1.26e-12	65.1
MS.gene68191.t1	AT1G20450	36.019	211	88	10	1	175	1	200	1.92e-14	70.1
MS.gene68191.t1	AT1G20450	55.263	76	26	3	110	184	184	252	1.29e-12	65.1

Find 0 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAGAAGAAGAAAGAAAAGA+AGG	-	57668:74272-74291	MS.gene68191:intron	25.0%
!	AAAGTAGAAGAAAAAGAAGA+AGG	-	57668:73958-73977	MS.gene68191:CDS	25.0%
!!	TTCTTCTTTTTCTTCTACTT+TGG	+	57668:73959-73978	None:intergenic	25.0%
!	TTTTCTAGGTGGTAAGAAAA+AGG	-	57668:73849-73868	MS.gene68191:CDS	30.0%
	AAAATTAAGGAGAAGCTTCC+AGG	-	57668:74387-74406	MS.gene68191:CDS	35.0%
	AAGATCAAAGAGAAGATACC+TGG	-	57668:74534-74553	MS.gene68191:CDS	35.0%
	ACAACATCAACTTTCTCTAC+TGG	+	57668:74321-74340	None:intergenic	35.0%
	AGAACATATTAAGCCTCAAG+AGG	-	57668:73876-73895	MS.gene68191:CDS	35.0%
	AGACAACAAAGATCATCACA+AGG	-	57668:74587-74606	MS.gene68191:CDS	35.0%
	AGGTTTCCTGGACAAAATTA+AGG	-	57668:74374-74393	MS.gene68191:CDS	35.0%
	GAAAGAAAAGAAGGAGAAGA+AGG	-	57668:74281-74300	MS.gene68191:intron	35.0%
	TGAAACAGAGATCAAAGACA+GGG	-	57668:73816-73835	MS.gene68191:CDS	35.0%
	TGTATTGAATACGTGTCAAG+TGG	-	57668:74104-74123	MS.gene68191:intron	35.0%
	TTTGATCTCTGTTTCAGAGT+TGG	+	57668:73812-73831	None:intergenic	35.0%
!!	GAGAAAGTTGATGTTGTTGA+TGG	-	57668:74324-74343	MS.gene68191:intron	35.0%
!!	TGCAACTGATTTTAGTCACA+AGG	-	57668:73906-73925	MS.gene68191:CDS	35.0%
!!!	AGGAGAGAAGAAAGGTATTT+TGG	-	57668:74509-74528	MS.gene68191:CDS	35.0%
!!!	AGGGGTGTTTTTGATTTTCT+AGG	-	57668:73835-73854	MS.gene68191:CDS	35.0%
!!!	GGTGTTTTTGATTTTCTAGG+TGG	-	57668:73838-73857	MS.gene68191:CDS	35.0%
	AGAAAAGAAGGAGAAGAAGG+AGG	-	57668:74284-74303	MS.gene68191:intron	40.0%
	AGCTTGAAGAGCTATCAGAT+CGG	+	57668:74020-74039	None:intergenic	40.0%
	CATGTTCAGTAGCAGTCTTA+GGG	+	57668:74566-74585	None:intergenic	40.0%
	CTGAAACAGAGATCAAAGAC+AGG	-	57668:73815-73834	MS.gene68191:CDS	40.0%
	GAAACAGAGATCAAAGACAG+GGG	-	57668:73817-73836	MS.gene68191:CDS	40.0%
	GATTGAACGTAGTGTCAACA+AGG	+	57668:74138-74157	None:intergenic	40.0%
	TATGCATGTATAGTCGAGTG+AGG	-	57668:74224-74243	MS.gene68191:intron	40.0%
	TCATGTTCAGTAGCAGTCTT+AGG	+	57668:74567-74586	None:intergenic	40.0%
	TCTTCTACTTTGGTCTCTGA+TGG	+	57668:73949-73968	None:intergenic	40.0%
	TGAAGAGAAGAAAGGTTTCC+TGG	-	57668:74362-74381	MS.gene68191:CDS	40.0%
!	GCTTCTCCTTAATTTTGTCC+AGG	+	57668:74383-74402	None:intergenic	40.0%
	AAAGAAACACACCAGCCTCT+TGG	-	57668:73984-74003	MS.gene68191:CDS	45.0%
	ACAACAGCTAGTCACGATCA+AGG	-	57668:74489-74508	MS.gene68191:CDS	45.0%
	ATCGGTGAAGTTTCTCCAAG+AGG	+	57668:74002-74021	None:intergenic	45.0%
	CACGATCAAGGAGAGAAGAA+AGG	-	57668:74501-74520	MS.gene68191:CDS	45.0%
	GGAGAATCAGAACAAGTACG+AGG	-	57668:73774-73793	MS.gene68191:CDS	45.0%
!	CTCTGTTTCAGAGTTGGTTG+CGG	+	57668:73806-73825	None:intergenic	45.0%
!	GTTGTTGTTGTCTCAGCAGA+TGG	+	57668:74471-74490	None:intergenic	45.0%
!	TCGTCAGTTTTCTTGTGTCC+TGG	+	57668:74408-74427	None:intergenic	45.0%
!!	GCAAGCACTGAAGAGAAGAA+AGG	-	57668:74354-74373	MS.gene68191:CDS	45.0%
	ACAGCAGGAGCAACAACAAC+AGG	+	57668:74447-74466	None:intergenic	50.0%
	ATACGTGTCAAGTGGCAGAG+TGG	-	57668:74112-74131	MS.gene68191:intron	50.0%
	GCAGTCTTAGGGTGATAACC+AGG	+	57668:74555-74574	None:intergenic	50.0%
	GCATGTATAGTCGAGTGAGG+AGG	-	57668:74227-74246	MS.gene68191:intron	50.0%
	GTGAAGTTTCTCCAAGAGGC+TGG	+	57668:73998-74017	None:intergenic	50.0%
	GTTGCAACAGCATCCTCTTG+AGG	+	57668:73892-73911	None:intergenic	50.0%
	TCGAGTGAGGAGGAAGTTGA+TGG	-	57668:74237-74256	MS.gene68191:intron	50.0%
!	TGTTTCAGAGTTGGTTGCGG+TGG	+	57668:73803-73822	None:intergenic	50.0%
!!	AGGAAGTTGATGGAGAGAGG+AGG	-	57668:74247-74266	MS.gene68191:intron	50.0%
!!	AGGAGGAAGTTGATGGAGAG+AGG	-	57668:74244-74263	MS.gene68191:intron	50.0%
	GCAGGAGCAACAACAACAGG+TGG	+	57668:74444-74463	None:intergenic	55.0%
	GGAGCAACAACAACAGGTGG+TGG	+	57668:74441-74460	None:intergenic	55.0%
	GTCTCAGCAGATGGCACAGC+AGG	+	57668:74462-74481	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
57668	gene	73766	74629	73766	ID=MS.gene68191
57668	mRNA	73766	74629	73766	ID=MS.gene68191.t1;Parent=MS.gene68191
57668	exon	74350	74629	74350	ID=MS.gene68191.t1.exon1;Parent=MS.gene68191.t1
57668	CDS	74350	74629	74350	ID=cds.MS.gene68191.t1;Parent=MS.gene68191.t1
57668	exon	73766	74079	73766	ID=MS.gene68191.t1.exon2;Parent=MS.gene68191.t1
57668	CDS	73766	74079	73766	ID=cds.MS.gene68191.t1;Parent=MS.gene68191.t1

Gene Sequence

>MS.gene68191

ATGGCTGAGGAGAATCAGAACAAGTACGAGGAAACCACCGCAACCAACTCTGAAACAGAGATCAAAGACAGGGGTGTTTTTGATTTTCTAGGTGGTAAGAAAAAGGATGAAGAACATATTAAGCCTCAAGAGGATGCTGTTGCAACTGATTTTAGTCACAAGGTGACTTTGTATGAAGCTCCATCAGAGACCAAAGTAGAAGAAAAAGAAGAAGGTGAAAAGAAACACACCAGCCTCTTGGAGAAACTTCACCGATCTGATAGCTCTTCAAGCTCTGTAAGTACTCTTTTTTTTTTCTTCATCATTTTCTTAATTTTGTTAGATCATAGTATAGTTAGTGTATTGAATACGTGTCAAGTGGCAGAGTGGCCTTGTTGACACTACGTTCAATCATTCAGTCTTTGTCGCTTTGATTCGTTATATTATGCAAAAATTAATGAATGAATGTTGTTTTGATGTATGCATGTATAGTCGAGTGAGGAGGAAGTTGATGGAGAGAGGAGGAAAAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGGAGGACACATCAGTGCCAGTAGAGAAAGTTGATGTTGTTGATGGAACAACAGCAAGCACTGAAGAGAAGAAAGGTTTCCTGGACAAAATTAAGGAGAAGCTTCCAGGACACAAGAAAACTGACGATGTAACAACTCCACCACCTGTTGTTGTTGCTCCTGCTGTGCCATCTGCTGAGACAACAACAACAACAGCTAGTCACGATCAAGGAGAGAAGAAAGGTATTTTGGAAAAGATCAAAGAGAAGATACCTGGTTATCACCCTAAGACTGCTACTGAACATGAAGACAACAAAGATCATCACAAGGATGAGACTACTTCTCATTGA

Protein sequence

>MS.gene68191.t1

MAEENQNKYEETTATNSETEIKDRGVFDFLGGKKKDEEHIKPQEDAVATDFSHKVTLYEAPSETKVEEKEEGEKKHTSLLEKLHRSDSSSSSVMPVEKVDVVDGTTASTEEKKGFLDKIKEKLPGHKKTDDVTTPPPVVVAPAVPSAETTTTTASHDQGEKKGILEKIKEKIPGYHPKTATEHEDNKDHHKDETTSH