AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68863


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68863.t1 MTR_4g132590 98.670 451 6 0 1 451 120 570 0.0 925
MS.gene68863.t1 MTR_4g132590 98.670 451 6 0 1 451 21 471 0.0 922
MS.gene68863.t1 MTR_2g016470 59.823 453 171 6 1 446 140 588 0.0 555
MS.gene68863.t1 MTR_3g086570 36.817 421 228 9 14 427 114 503 8.45e-94 294
MS.gene68863.t1 MTR_3g005340 38.889 432 220 10 29 449 122 520 2.79e-93 293
MS.gene68863.t1 MTR_1g031590 38.642 427 223 9 19 442 125 515 2.89e-93 292
MS.gene68863.t1 MTR_4g084570 39.110 427 221 9 19 442 126 516 6.16e-93 292
MS.gene68863.t1 MTR_4g100810 36.913 447 224 12 8 447 69 464 2.12e-90 285
MS.gene68863.t1 MTR_5g059260 38.771 423 222 8 32 449 140 530 2.47e-89 283
MS.gene68863.t1 MTR_5g099010 38.131 396 198 7 48 443 122 470 5.31e-88 280
MS.gene68863.t1 MTR_5g032100 37.500 416 239 8 30 440 70 469 1.16e-86 274
MS.gene68863.t1 MTR_3g100310 36.534 427 250 10 18 440 74 483 1.07e-85 272
MS.gene68863.t1 MTR_5g012770 36.889 450 207 13 9 447 86 469 4.79e-85 270
MS.gene68863.t1 MTR_3g115220 36.627 415 213 7 33 443 95 463 7.67e-85 271
MS.gene68863.t1 MTR_4g082310 38.177 406 206 8 42 445 94 456 1.80e-82 263
MS.gene68863.t1 MTR_5g042200 37.685 406 208 8 42 445 82 444 2.51e-81 259
MS.gene68863.t1 MTR_5g064620 37.381 420 201 11 19 429 86 452 2.90e-78 253
MS.gene68863.t1 MTR_3g099480 36.667 420 201 10 19 429 115 478 3.91e-77 250
MS.gene68863.t1 MTR_3g086570 36.023 347 186 7 14 353 114 431 4.95e-76 244
MS.gene68863.t1 MTR_2g059350 36.453 406 208 10 45 445 115 475 1.10e-74 243
MS.gene68863.t1 MTR_4g110030 36.228 403 213 8 45 445 116 476 3.16e-74 242
MS.gene68863.t1 MTR_6g016015 35.452 409 208 9 45 445 115 475 9.27e-74 241
MS.gene68863.t1 MTR_3g096020 33.412 422 232 8 14 434 159 532 2.34e-65 220
MS.gene68863.t1 MTR_1g102030 33.110 447 237 12 17 449 60 458 1.40e-62 211
MS.gene68863.t1 MTR_4g125460 30.345 435 251 10 18 448 62 448 1.32e-61 208
MS.gene68863.t1 MTR_4g125460 30.345 435 251 10 18 448 201 587 3.20e-60 207
MS.gene68863.t1 MTR_4g019210 31.690 426 237 12 18 438 205 581 2.14e-59 206
MS.gene68863.t1 MTR_5g081690 28.837 430 254 10 18 443 94 475 3.87e-55 192
MS.gene68863.t1 MTR_3g026650 30.769 390 219 9 48 434 176 517 7.61e-48 172
MS.gene68863.t1 MTR_4g023030 31.991 422 230 14 15 428 199 571 4.46e-47 172
MS.gene68863.t1 MTR_3g026650 31.054 351 194 7 48 395 176 481 2.46e-43 159
MS.gene68863.t1 MTR_4g132680 45.417 240 40 10 139 373 1 154 4.15e-41 144
MS.gene68863.t1 MTR_4g010990 29.111 371 200 11 45 409 75 388 4.58e-38 144
MS.gene68863.t1 MTR_7g017330 29.275 345 195 8 32 364 83 390 1.14e-37 145
MS.gene68863.t1 MTR_1g095680 73.684 114 12 2 183 296 16 111 1.31e-37 133
MS.gene68863.t1 MTR_1g101990 33.904 292 147 7 161 449 6 254 1.51e-37 139
MS.gene68863.t1 MTR_4g010990 27.887 355 193 11 61 409 2 299 2.45e-31 123
MS.gene68863.t1 MTR_3g092590 30.330 333 187 8 41 364 86 382 1.44e-30 125
MS.gene68863.t1 MTR_3g092590 30.252 357 205 10 17 364 61 382 1.44e-30 124
MS.gene68863.t1 MTR_3g026650 30.224 268 139 7 48 312 176 398 2.60e-26 110
MS.gene68863.t1 MTR_1g007390 28.909 339 190 9 41 364 86 388 7.81e-25 108
MS.gene68863.t1 MTR_7g064210 34.518 197 95 4 164 357 24 189 9.60e-24 103
MS.gene68863.t1 MTR_1g101985 44.340 106 55 3 17 120 60 163 6.68e-22 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68863.t1 AT1G62330 73.363 443 117 1 10 451 186 628 0.0 701
MS.gene68863.t1 AT1G11990 71.895 459 121 2 1 451 131 589 0.0 668
MS.gene68863.t1 AT1G11990 68.455 466 103 2 1 451 131 567 0.0 633
MS.gene68863.t1 AT1G29200 56.264 455 188 4 1 448 19 469 4.44e-175 500
MS.gene68863.t1 AT1G29200 56.264 455 188 4 1 448 19 469 4.44e-175 500
MS.gene68863.t1 AT1G29200 56.264 455 188 4 1 448 135 585 1.09e-173 501
MS.gene68863.t1 AT1G29200 59.398 399 158 2 50 448 1 395 1.73e-165 473
MS.gene68863.t1 AT3G26370 36.806 432 234 9 14 438 122 521 7.14e-95 297
MS.gene68863.t1 AT4G38390 37.931 435 219 8 14 444 90 477 1.54e-92 290
MS.gene68863.t1 AT2G01480 39.423 416 214 8 30 442 140 520 3.30e-92 290
MS.gene68863.t1 AT5G65470 37.220 446 259 11 2 442 43 472 2.68e-91 286
MS.gene68863.t1 AT2G01480 39.401 401 206 7 30 427 140 506 8.87e-89 280
MS.gene68863.t1 AT1G14970 38.596 399 212 7 45 442 9 375 1.03e-88 276
MS.gene68863.t1 AT1G14970 37.799 418 218 9 30 442 21 401 1.46e-88 277
MS.gene68863.t1 AT1G14970 37.799 418 218 9 30 442 141 521 2.68e-87 277
MS.gene68863.t1 AT4G24530 37.615 436 239 12 14 439 71 483 3.26e-87 276
MS.gene68863.t1 AT1G35510 36.643 423 235 7 28 449 142 532 7.71e-87 276
MS.gene68863.t1 AT4G16650 37.220 446 222 12 9 447 84 478 3.61e-85 271
MS.gene68863.t1 AT4G16650 37.220 446 222 12 9 447 84 478 3.61e-85 271
MS.gene68863.t1 AT2G03280 37.931 406 207 7 42 445 85 447 4.76e-83 264
MS.gene68863.t1 AT1G14020 38.670 406 204 8 42 445 88 450 2.60e-82 262
MS.gene68863.t1 AT1G38065 36.090 399 224 6 45 443 26 393 1.07e-81 259
MS.gene68863.t1 AT1G76270 33.556 450 244 9 3 447 62 461 1.23e-81 263
MS.gene68863.t1 AT1G38065 36.090 399 224 6 45 443 36 403 1.37e-81 259
MS.gene68863.t1 AT1G20550 34.174 436 230 9 14 443 76 460 4.57e-81 261
MS.gene68863.t1 AT1G38131 36.090 399 224 6 45 443 155 522 2.77e-80 259
MS.gene68863.t1 AT5G15740 36.675 409 212 10 45 450 106 470 6.02e-79 254
MS.gene68863.t1 AT3G02250 36.160 401 212 8 45 443 106 464 3.13e-77 249
MS.gene68863.t1 AT2G03280 35.566 433 207 8 42 445 85 474 5.48e-77 249
MS.gene68863.t1 AT5G64600 32.861 423 229 7 16 429 79 455 4.85e-69 228
MS.gene68863.t1 AT1G22460 34.383 413 214 10 19 426 135 495 1.36e-68 228
MS.gene68863.t1 AT1G04910 32.719 434 234 8 20 449 71 450 3.79e-67 223
MS.gene68863.t1 AT5G01100 32.093 430 241 10 18 444 190 571 6.71e-62 212
MS.gene68863.t1 AT3G26370 36.667 270 138 4 20 283 128 370 3.50e-60 202
MS.gene68863.t1 AT2G37980 29.425 452 259 11 3 444 180 581 1.00e-59 206
MS.gene68863.t1 AT3G54100 29.748 437 251 11 18 448 195 581 3.14e-59 205
MS.gene68863.t1 AT5G35570 31.395 430 243 12 19 444 225 606 4.16e-58 202
MS.gene68863.t1 AT2G44500 32.151 423 235 9 18 434 146 522 3.24e-56 196
MS.gene68863.t1 AT3G07900 30.365 438 252 11 18 449 157 547 2.57e-53 188
MS.gene68863.t1 AT5G63390 29.647 425 246 11 15 433 130 507 3.44e-47 171
MS.gene68863.t1 AT1G52630 28.788 396 218 12 18 407 46 383 1.25e-39 148
MS.gene68863.t1 AT3G30300 30.448 335 186 9 40 364 95 392 5.32e-37 144
MS.gene68863.t1 AT3G30300 30.448 335 186 9 40 364 95 392 5.32e-37 144
MS.gene68863.t1 AT3G03810 31.148 366 190 10 17 364 60 381 2.73e-35 139
MS.gene68863.t1 AT3G03810 31.148 366 190 10 17 364 60 381 2.73e-35 139
MS.gene68863.t1 AT1G52630 28.000 350 193 9 61 407 2 295 7.53e-33 127
MS.gene68863.t1 AT2G44500 30.897 301 159 7 18 312 146 403 3.28e-32 127

Find 0 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAAGTTAAATTGA+CGG - 32665:18647-18666 MS.gene68863:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - 32665:18520-18539 MS.gene68863:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + 32665:18519-18538 MS.gene68863:intron 15.0%
!! TCTAACAATTAAATACAAAT+AGG - 32665:18864-18883 MS.gene68863:intergenic 15.0%
!!! ACTTGATTTTTAAGTATAAT+AGG - 32665:18959-18978 MS.gene68863:intergenic 15.0%
!!! ATAAGATTTATCAACAATTT+TGG + 32665:18171-18190 MS.gene68863:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - 32665:18393-18412 MS.gene68863:intergenic 15.0%
!!! TAAGATTTATCAACAATTTT+GGG + 32665:18172-18191 MS.gene68863:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - 32665:18496-18515 MS.gene68863:intergenic 15.0%
!! AAACCTAATATTTAGTTACT+GGG + 32665:18041-18060 MS.gene68863:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + 32665:18510-18529 MS.gene68863:intron 20.0%
!! AAATTTAATTCAACCAATAC+TGG - 32665:18132-18151 MS.gene68863:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - 32665:18433-18452 MS.gene68863:intergenic 20.0%
!!! AAGATTTATCAACAATTTTG+GGG + 32665:18173-18192 MS.gene68863:intron 20.0%
!!! CATCAAATAAAAAGTACATA+GGG - 32665:18021-18040 MS.gene68863:intergenic 20.0%
!!! CTACTTTGATTTAAAGTAAT+TGG + 32665:19630-19649 MS.gene68863:intron 20.0%
!!! TAAGCTTTATCTTAAATGAT+TGG + 32665:17814-17833 MS.gene68863:intron 20.0%
!!! TCATCAAATAAAAAGTACAT+AGG - 32665:18022-18041 MS.gene68863:intergenic 20.0%
! AACTTATTCGTGTATTTGTT+GGG + 32665:18248-18267 MS.gene68863:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - 32665:18553-18572 MS.gene68863:intergenic 25.0%
! AATTTATGTACAGTAGTGTA+TGG + 32665:17923-17942 MS.gene68863:CDS 25.0%
! GAAAATTGAAAACTTTGCTA+TGG - 32665:17389-17408 MS.gene68863:intergenic 25.0%
! GAAACCTAATATTTAGTTAC+TGG + 32665:18040-18059 MS.gene68863:intron 25.0%
! GTATAATTCCATAGTCAATT+CGG + 32665:18674-18693 MS.gene68863:intron 25.0%
! TAACTTATTCGTGTATTTGT+TGG + 32665:18247-18266 MS.gene68863:intron 25.0%
! TAGCTGTAAGTATTCTTTAT+CGG + 32665:17737-17756 MS.gene68863:intron 25.0%
! TCCAAATTTAATTCTCCAAA+TGG - 32665:19311-19330 MS.gene68863:intergenic 25.0%
! TCCATTTGGAGAATTAAATT+TGG + 32665:19307-19326 MS.gene68863:CDS 25.0%
! TCTCTTTAGTGACTAATTTA+GGG - 32665:19838-19857 MS.gene68863:intergenic 25.0%
! TCTGGTTATCGAATATATTA+TGG + 32665:20209-20228 MS.gene68863:CDS 25.0%
! TGAAAAACACTACAATAGAA+TGG + 32665:20288-20307 MS.gene68863:CDS 25.0%
! TGAGATGAATAATTAGCAAA+TGG - 32665:19887-19906 MS.gene68863:intergenic 25.0%
! TTCTCTTTAGTGACTAATTT+AGG - 32665:19839-19858 MS.gene68863:intergenic 25.0%
! TTGTTCACTTTATTGGATTT+GGG + 32665:18978-18997 MS.gene68863:CDS 25.0%
!! AATCAAGTTGTTCACTTTAT+TGG + 32665:18971-18990 MS.gene68863:CDS 25.0%
!! ACACTACTGTACATAAATTT+TGG - 32665:17922-17941 MS.gene68863:intergenic 25.0%
!! AGATTTATCAACAATTTTGG+GGG + 32665:18174-18193 MS.gene68863:intron 25.0%
!! AGTTTAATTAGCTTACTACA+AGG - 32665:18828-18847 MS.gene68863:intergenic 25.0%
!! ATTTGCTAATTATTCATCTC+AGG + 32665:19886-19905 MS.gene68863:CDS 25.0%
!! CAATTAGGAAAAGCATAATA+GGG - 32665:19142-19161 MS.gene68863:intergenic 25.0%
!! CACTACTGTACATAAATTTT+GGG - 32665:17921-17940 MS.gene68863:intergenic 25.0%
!! GTTTAATTAGCTTACTACAA+GGG - 32665:18827-18846 MS.gene68863:intergenic 25.0%
!! TATTATGCTTTTCCTAATTG+AGG + 32665:19142-19161 MS.gene68863:intron 25.0%
!! TCAATTAGGAAAAGCATAAT+AGG - 32665:19143-19162 MS.gene68863:intergenic 25.0%
!!! GATTTTTAAGTATAATAGGC+AGG - 32665:18955-18974 MS.gene68863:intergenic 25.0%
AAACAGGATTTACTGTAACA+AGG - 32665:19973-19992 MS.gene68862:intergenic 30.0%
AAGACAAACATATTTGTAGC+TGG + 32665:19761-19780 MS.gene68863:CDS 30.0%
AATTGTTAGAAGACTTTACC+AGG + 32665:18874-18893 MS.gene68863:intron 30.0%
ACAACACTTCTGAATCATTT+GGG + 32665:17760-17779 MS.gene68863:intron 30.0%
ACTACAATAGAAGGAAGTAA+TGG + 32665:17670-17689 MS.gene68863:intron 30.0%
CATGAAAGCTTCAAAATACT+TGG + 32665:19349-19368 MS.gene68863:CDS 30.0%
CTACAAATATGTTTGTCTTG+CGG - 32665:19760-19779 MS.gene68863:intergenic 30.0%
CTCATTCCTTATGTGAATTT+GGG + 32665:19405-19424 MS.gene68863:CDS 30.0%
GAAATTTGATCAACCAGTAT+TGG + 32665:18116-18135 MS.gene68863:intron 30.0%
GGCTTATATAACTACAAACT+AGG - 32665:17352-17371 MS.gene68863:intergenic 30.0%
GGTTATCGAATATATTATGG+TGG + 32665:20212-20231 MS.gene68863:CDS 30.0%
GTTGTTCACTTTATTGGATT+TGG + 32665:18977-18996 MS.gene68863:CDS 30.0%
TAAAACAAGAATGCTAGAAG+TGG - 32665:18229-18248 MS.gene68863:intergenic 30.0%
TAATGACAATGAGAGAGAAA+TGG - 32665:17972-17991 MS.gene68863:intergenic 30.0%
TATCGAATATATTATGGTGG+AGG + 32665:20215-20234 MS.gene68863:CDS 30.0%
TCACCCAGTAACTAAATATT+AGG - 32665:18047-18066 MS.gene68863:intergenic 30.0%
TCATTCCTTATGTGAATTTG+GGG + 32665:19406-19425 MS.gene68863:CDS 30.0%
TCCATAGCTGCAAAAAAAAA+AGG + 32665:17595-17614 MS.gene68863:intron 30.0%
TCCTAAAATACTACAGTCTT+TGG + 32665:18763-18782 MS.gene68863:CDS 30.0%
TTAAATGATTGGCGTCATTT+GGG + 32665:17825-17844 MS.gene68863:intron 30.0%
TTCTACTCTACTACAATAGA+AGG + 32665:17661-17680 MS.gene68863:intron 30.0%
TTGTGATGTCTAATTATCGA+AGG - 32665:19051-19070 MS.gene68863:intergenic 30.0%
! AACTAGTTCTTCACTTATAC+TGG + 32665:19537-19556 MS.gene68863:intron 30.0%
! AATTTTCAGTAACTCTGACT+TGG + 32665:17402-17421 MS.gene68863:intron 30.0%
! ACTTATTCGTGTATTTGTTG+GGG + 32665:18249-18268 MS.gene68863:intron 30.0%
! ATGTGTTTCAAGTAAAAGCT+CGG - 32665:18932-18951 MS.gene68863:intergenic 30.0%
! ATTTTCAGTAACTCTGACTT+GGG + 32665:17403-17422 MS.gene68863:intron 30.0%
! TAGTCTTTTGATGAATGACA+CGG + 32665:20085-20104 MS.gene68863:intron 30.0%
! TCCAAAGACTGTAGTATTTT+AGG - 32665:18767-18786 MS.gene68863:intergenic 30.0%
! TCTCAGATTTGAAATTGACA+TGG + 32665:19379-19398 MS.gene68863:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG + 32665:18602-18621 MS.gene68863:intron 30.0%
!!! AGGAAGTAATGGATACATTT+TGG + 32665:17681-17700 MS.gene68863:CDS 30.0%
!!! CAAGTATTTTGAAGCTTTCA+TGG - 32665:19351-19370 MS.gene68863:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - 32665:18601-18620 MS.gene68863:intergenic 30.0%
AACGCCAAACGTTTAATATG+AGG - 32665:20034-20053 MS.gene68863:intergenic 35.0%
AACGTGAACCAAAAGATTTG+TGG + 32665:17449-17468 MS.gene68863:CDS 35.0%
AATACTACAGTCTTTGGACT+TGG + 32665:18769-18788 MS.gene68863:CDS 35.0%
ACAACTTGACTCCTGATATT+CGG + 32665:18726-18745 MS.gene68863:CDS 35.0%
AGAGAACTTACTTTCTTCAG+CGG + 32665:19853-19872 MS.gene68863:CDS 35.0%
ATATTTACCTGCAGCTCAAA+TGG - 32665:19028-19047 MS.gene68863:intergenic 35.0%
ATGTTCTGATCAGCGAAATT+GGG + 32665:17507-17526 MS.gene68863:CDS 35.0%
CAAAGTTGAATTGAGTAACC+GGG - 32665:17893-17912 MS.gene68863:intergenic 35.0%
CATTCCTTATGTGAATTTGG+GGG + 32665:19407-19426 MS.gene68863:CDS 35.0%
CCAAAGTTGAATTGAGTAAC+CGG - 32665:17894-17913 MS.gene68863:intergenic 35.0%
CTGTAACAAGGAGCTTAATT+AGG - 32665:19961-19980 MS.gene68863:intergenic 35.0%
CTTAAATGATTGGCGTCATT+TGG + 32665:17824-17843 MS.gene68863:intron 35.0%
GACAACACTTCTGAATCATT+TGG + 32665:17759-17778 MS.gene68863:intron 35.0%
GCTCATTCCTTATGTGAATT+TGG + 32665:19404-19423 MS.gene68863:CDS 35.0%
GTGGAGAAATTGATTACTAG+CGG + 32665:18074-18093 MS.gene68863:intron 35.0%
GTTAGTACTCTTACTCAGTA+TGG - 32665:17630-17649 MS.gene68863:intergenic 35.0%
TCTAGATGAAGTCCTCAATT+AGG - 32665:19157-19176 MS.gene68863:intergenic 35.0%
TGCTCCTCATATTAAACGTT+TGG + 32665:20027-20046 MS.gene68863:intron 35.0%
TTAAACGTTTGGCGTTATTG+AGG + 32665:20038-20057 MS.gene68863:intron 35.0%
! AATTAGCTTACTACAAGGGA+AGG - 32665:18823-18842 MS.gene68863:intergenic 35.0%
! ACATGAAAAGTGCACAAAAC+AGG - 32665:19989-20008 MS.gene68863:intergenic 35.0%
! ACTTTGCTATGGCAAACAAT+TGG - 32665:17378-17397 MS.gene68863:intergenic 35.0%
! ATTAGCTTACTACAAGGGAA+GGG - 32665:18822-18841 MS.gene68863:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - 32665:18471-18490 MS.gene68863:intergenic 35.0%
! TATTCTGGGAACAAATTGCA+GGG - 32665:19207-19226 MS.gene68863:intergenic 35.0%
! TATTGAGGACCGGATTATTT+TGG + 32665:20053-20072 MS.gene68863:intron 35.0%
! TGACTTGGGTATTTCACATT+TGG + 32665:17417-17436 MS.gene68863:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - 32665:18467-18486 MS.gene68863:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - 32665:18367-18386 MS.gene68863:intergenic 35.0%
!! GTAGCTGGTTCTAATTTGTA+TGG + 32665:19776-19795 MS.gene68863:CDS 35.0%
!! GTGTTTTTGAACAGAGAATG+AGG + 32665:20312-20331 MS.gene68863:CDS 35.0%
!! TAATAACAGTAGAGCATTGC+CGG - 32665:19102-19121 MS.gene68863:intergenic 35.0%
!! TATCAACAATTTTGGGGGAT+GGG + 32665:18179-18198 MS.gene68863:intron 35.0%
!! TTATCAACAATTTTGGGGGA+TGG + 32665:18178-18197 MS.gene68863:intron 35.0%
!!! GCCTTTTTTTTTTGCAGCTA+TGG - 32665:17599-17618 MS.gene68863:intergenic 35.0%
!!! TACATTTTGGTTACCGCAAA+TGG + 32665:17694-17713 MS.gene68863:CDS 35.0%
AAAGCCATGAACTACAGATG+TGG - 32665:18331-18350 MS.gene68862:intergenic 40.0%
AACAGATGTTGACATGGGAA+AGG + 32665:18898-18917 MS.gene68863:CDS 40.0%
ACAGCAGCACCAAAATAATC+CGG - 32665:20065-20084 MS.gene68863:intergenic 40.0%
ACCAGCAGTTTCTTGTATTC+TGG - 32665:19222-19241 MS.gene68863:intergenic 40.0%
AGATGTCTCCGAATTGACTA+TGG - 32665:18685-18704 MS.gene68863:intergenic 40.0%
AGGAAGTCAGCTTTCATCTT+TGG + 32665:20184-20203 MS.gene68863:CDS 40.0%
ATATACCTCTGCCAATGCAT+GGG - 32665:17312-17331 MS.gene68863:intergenic 40.0%
ATGGATTCTTCAGGTGTCAA+TGG - 32665:19710-19729 MS.gene68863:intergenic 40.0%
CAATTTCGCTGATCAGAACA+TGG - 32665:17508-17527 MS.gene68863:intergenic 40.0%
CAGGTAACAGATGTTGACAT+GGG + 32665:18893-18912 MS.gene68863:intron 40.0%
CATGATCTGATTCTTTAGCC+CGG + 32665:19080-19099 MS.gene68863:intron 40.0%
CATGTTCTGATCAGCGAAAT+TGG + 32665:17506-17525 MS.gene68863:CDS 40.0%
CCAGCAGTTTCTTGTATTCT+GGG - 32665:19221-19240 MS.gene68863:intergenic 40.0%
CCGGTTACTCAATTCAACTT+TGG + 32665:17891-17910 MS.gene68863:CDS 40.0%
CGAAGAAGAGAGGAAAGAAT+TGG + 32665:19433-19452 MS.gene68863:CDS 40.0%
CGCTTATTTGGACGTATTGT+TGG - 32665:20248-20267 MS.gene68863:intergenic 40.0%
GCTATGGCAAACAATTGGAA+AGG - 32665:17373-17392 MS.gene68863:intergenic 40.0%
GTAGTGTATGGAGAGATACA+AGG + 32665:17935-17954 MS.gene68863:CDS 40.0%
GTTCAGACACACATACCATT+AGG - 32665:17535-17554 MS.gene68863:intergenic 40.0%
TATATACCTCTGCCAATGCA+TGG - 32665:17313-17332 MS.gene68863:intergenic 40.0%
TATTGGATTTGGGAATCGCT+TGG + 32665:18988-19007 MS.gene68863:CDS 40.0%
TCAATTCGGAGACATCTATC+AGG + 32665:18688-18707 MS.gene68863:CDS 40.0%
TCCTGATATTCGGATAGTGA+GGG + 32665:18736-18755 MS.gene68863:CDS 40.0%
TCTATTGTAGTTAGCAGCAC+TGG + 32665:20115-20134 MS.gene68863:intron 40.0%
TGAACCAAAAGATTTGTGGC+AGG + 32665:17453-17472 MS.gene68863:CDS 40.0%
TTGATTGATCCCACCATTTG+CGG - 32665:17710-17729 MS.gene68863:intergenic 40.0%
! ATGGTGGGATCAATCAACAA+CGG + 32665:17713-17732 MS.gene68863:CDS 40.0%
! CGTGTATTTGTTGGGGAAAA+TGG + 32665:18256-18275 MS.gene68863:intron 40.0%
! GACTAATTTAGGGTACAAGC+TGG - 32665:19828-19847 MS.gene68863:intergenic 40.0%
! GTATTCTGGGAACAAATTGC+AGG - 32665:19208-19227 MS.gene68863:intergenic 40.0%
! GTCTTATTGGACCATTGGAT+CGG + 32665:19273-19292 MS.gene68863:CDS 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - 32665:18468-18487 MS.gene68863:intergenic 40.0%
! TTTCAAGTAAAAGCTCGGCT+TGG - 32665:18927-18946 MS.gene68863:intergenic 40.0%
! TTTTTCATCAATGCCAGTGC+AGG - 32665:19482-19501 MS.gene68863:intergenic 40.0%
!! AATAACAGTAGAGCATTGCC+GGG - 32665:19101-19120 MS.gene68863:intergenic 40.0%
!! GCTGGTTCTAATTTGTATGG+AGG + 32665:19779-19798 MS.gene68863:CDS 40.0%
!! TTTTGGTTACCGCAAATGGT+GGG + 32665:17698-17717 MS.gene68863:CDS 40.0%
!!! ATTTTGGTTACCGCAAATGG+TGG + 32665:17697-17716 MS.gene68863:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + 32665:18606-18625 MS.gene68863:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - 32665:18625-18606 MS.gene68863:intergenic 40.0%
ACCTGCAGCTCAAATGGTAT+TGG - 32665:19022-19041 MS.gene68863:intergenic 45.0%
ACTACAGTCTTTGGACTTGG+AGG + 32665:18772-18791 MS.gene68863:CDS 45.0%
AGATGTTGACATGGGAAAGG+AGG + 32665:18901-18920 MS.gene68863:CDS 45.0%
ATGGTGTCCAAGAAGAAGCA+GGG - 32665:17489-17508 MS.gene68863:intergenic 45.0%
ATTCGGAGACATCTATCAGG+AGG + 32665:18691-18710 MS.gene68863:CDS 45.0%
ATTTGTATGGAGGTCGCTCA+CGG + 32665:19789-19808 MS.gene68863:CDS 45.0%
CAATACGTCCAAATAAGCGC+AGG + 32665:20249-20268 MS.gene68863:CDS 45.0%
CAGCGAAATTGGGAACCTAA+TGG + 32665:17517-17536 MS.gene68863:CDS 45.0%
CCAGGTAACAGATGTTGACA+TGG + 32665:18892-18911 MS.gene68863:intron 45.0%
CCATGTCAACATCTGTTACC+TGG - 32665:18895-18914 MS.gene68863:intergenic 45.0%
CCCAGAATACAAGAAACTGC+TGG + 32665:19218-19237 MS.gene68863:CDS 45.0%
CTCCTGATATTCGGATAGTG+AGG + 32665:18735-18754 MS.gene68863:CDS 45.0%
CTGACTTCCTGAATCAGTCA+TGG - 32665:20174-20193 MS.gene68863:intergenic 45.0%
GATGCCACATCTGTAGTTCA+TGG + 32665:18324-18343 MS.gene68863:intron 45.0%
GGTTTGTAATGCTGTTGTCG+TGG + 32665:17867-17886 MS.gene68863:intron 45.0%
GTTACTGGGTGAATGATCAG+TGG + 32665:18055-18074 MS.gene68863:intron 45.0%
TCAATGCCAGTGCAGGAAAA+TGG - 32665:19475-19494 MS.gene68863:intergenic 45.0%
TCCAATACCATTTGAGCTGC+AGG + 32665:19018-19037 MS.gene68863:CDS 45.0%
TCCCTCACTATCCGAATATC+AGG - 32665:18740-18759 MS.gene68863:intergenic 45.0%
TCCTTATGTGAATTTGGGGG+AGG + 32665:19410-19429 MS.gene68863:CDS 45.0%
TCTTTGGACTTGGAGGCAAT+CGG + 32665:18779-18798 MS.gene68863:CDS 45.0%
TGGTGGGATCAATCAACAAC+GGG + 32665:17714-17733 MS.gene68863:CDS 45.0%
TTGCTTCTTAAGAGGTTGCG+CGG + 32665:19242-19261 MS.gene68863:CDS 45.0%
! AGCATGAGGATGGATTCTTC+AGG - 32665:19719-19738 MS.gene68863:intergenic 45.0%
! CTACAGATGTGGCATCGAAA+TGG - 32665:18320-18339 MS.gene68863:intergenic 45.0%
! GCATTTGCCATGACTGATTC+AGG + 32665:20164-20183 MS.gene68863:CDS 45.0%
! GGTTCCTGCCACAAATCTTT+TGG - 32665:17460-17479 MS.gene68863:intergenic 45.0%
! TGAGATCCATTTTCCTGCAC+TGG + 32665:19466-19485 MS.gene68863:CDS 45.0%
! TTAGCAGCACTGGACTTCAT+AGG + 32665:20125-20144 MS.gene68863:CDS 45.0%
!! CAGCTTTCATCTTTGGTGTC+TGG + 32665:20191-20210 MS.gene68863:CDS 45.0%
!! CTGCTGGTTTGCTTCTTAAG+AGG + 32665:19234-19253 MS.gene68863:CDS 45.0%
!! TGCAGGTCTTATTGGACCAT+TGG + 32665:19268-19287 MS.gene68863:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + 32665:18605-18624 MS.gene68863:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - 32665:18624-18605 MS.gene68863:intergenic 45.0%
AAGAGCAGCAAGCATGAGGA+TGG - 32665:19729-19748 MS.gene68863:intergenic 50.0%
AGATTTGTGGCAGGAACCCT+TGG + 32665:17462-17481 MS.gene68863:CDS 50.0%
AGTCATGGCAAATGCATCCG+AGG - 32665:20159-20178 MS.gene68863:intergenic 50.0%
CAAGAAGAAGCAGGGACCAA+GGG - 32665:17481-17500 MS.gene68863:intergenic 50.0%
CATGGTGTCCAAGAAGAAGC+AGG - 32665:17490-17509 MS.gene68863:intergenic 50.0%
CCAACAAGATGCCGATCCAA+TGG - 32665:19287-19306 MS.gene68863:intergenic 50.0%
CCATTGGATCGGCATCTTGT+TGG + 32665:19284-19303 MS.gene68863:CDS 50.0%
CGGCATCTTGTTGGTCCATT+TGG + 32665:19293-19312 MS.gene68863:CDS 50.0%
CGTTTGGCGTTATTGAGGAC+CGG + 32665:20043-20062 MS.gene68863:intron 50.0%
CTAGCAAGCCTGCGCTTATT+TGG - 32665:20260-20279 MS.gene68863:intergenic 50.0%
CTTCAGAGCTCAGGTCTGAA+GGG + 32665:19678-19697 MS.gene68863:CDS 50.0%
GCCTCCCCCAAATTCACATA+AGG - 32665:19414-19433 MS.gene68863:intergenic 50.0%
GGCTGATTGTGAGTTGCAAC+AGG + 32665:17846-17865 MS.gene68863:intron 50.0%
TACCTTCTCCTTCAGAGCTC+AGG + 32665:19669-19688 MS.gene68863:CDS 50.0%
TGCTTCTTAAGAGGTTGCGC+GGG + 32665:19243-19262 MS.gene68863:CDS 50.0%
! ATCCTCATGCTTGCTGCTCT+TGG + 32665:19728-19747 MS.gene68863:CDS 50.0%
AGCCAAGAGCAGCAAGCATG+AGG - 32665:19733-19752 MS.gene68863:intergenic 55.0%
CCAAGAAGAAGCAGGGACCA+AGG - 32665:17482-17501 MS.gene68863:intergenic 55.0%
CCTTCAGAGCTCAGGTCTGA+AGG + 32665:19677-19696 MS.gene68863:CDS 55.0%
CCTTGGTCCCTGCTTCTTCT+TGG + 32665:17479-17498 MS.gene68863:CDS 55.0%
CTTCATAGGCTGTGCTGCCT+CGG + 32665:20139-20158 MS.gene68863:CDS 55.0%
GTAATGCTGTTGTCGTGGCC+CGG + 32665:17872-17891 MS.gene68863:CDS 55.0%
! CCTTCAGACCTGAGCTCTGA+AGG - 32665:19680-19699 MS.gene68863:intergenic 55.0%
!! GACCTGAGCTCTGAAGGAGA+AGG - 32665:19674-19693 MS.gene68863:intergenic 55.0%
GTATGGAGGTCGCTCACGGT+TGG + 32665:19793-19812 MS.gene68863:CDS 60.0%
TTGGGGGAGGCGAAGAAGAG+AGG + 32665:19423-19442 MS.gene68863:CDS 60.0%
! CGCGGGCATGCAGGTCTTAT+TGG + 32665:19260-19279 MS.gene68863:CDS 60.0%
!! GGCATTGGCTGCCCATGCAT+TGG + 32665:17298-17317 MS.gene68863:CDS 60.0%
AAGAGGTTGCGCGGGCATGC+AGG + 32665:19251-19270 MS.gene68863:CDS 65.0%
! GGCTGCCCATGCATTGGCAG+AGG + 32665:17304-17323 MS.gene68863:CDS 65.0%


Chromosome Type Strat End Strand Name
32665 gene 17293 20358 17293 ID=MS.gene68863
32665 mRNA 17293 20358 17293 ID=MS.gene68863.t1;Parent=MS.gene68863
32665 exon 17293 17325 17293 ID=MS.gene68863.t1.exon1;Parent=MS.gene68863.t1
32665 CDS 17293 17325 17293 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 17445 17538 17445 ID=MS.gene68863.t1.exon2;Parent=MS.gene68863.t1
32665 CDS 17445 17538 17445 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 17680 17741 17680 ID=MS.gene68863.t1.exon3;Parent=MS.gene68863.t1
32665 CDS 17680 17741 17680 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 17868 17956 17868 ID=MS.gene68863.t1.exon4;Parent=MS.gene68863.t1
32665 CDS 17868 17956 17868 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 18688 18808 18688 ID=MS.gene68863.t1.exon5;Parent=MS.gene68863.t1
32665 CDS 18688 18808 18688 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 18896 19039 18896 ID=MS.gene68863.t1.exon6;Parent=MS.gene68863.t1
32665 CDS 18896 19039 18896 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 19176 19510 19176 ID=MS.gene68863.t1.exon7;Parent=MS.gene68863.t1
32665 CDS 19176 19510 19176 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 19667 19907 19667 ID=MS.gene68863.t1.exon8;Parent=MS.gene68863.t1
32665 CDS 19667 19907 19667 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
32665 exon 20125 20358 20125 ID=MS.gene68863.t1.exon9;Parent=MS.gene68863.t1
32665 CDS 20125 20358 20125 ID=cds.MS.gene68863.t1;Parent=MS.gene68863.t1
Gene Sequence

>MS.gene68863

ATGTTGGCATTGGCTGCCCATGCATTGGCAGAGGTATATATTTTGAAGAAAATGTGCCTAGTTTGTAGTTATATAAGCCTTTCCAATTGTTTGCCATAGCAAAGTTTTCAATTTTCAGTAACTCTGACTTGGGTATTTCACATTTGGTACAGAACAAACGTGAACCAAAAGATTTGTGGCAGGAACCCTTGGTCCCTGCTTCTTCTTGGACACCATGTTCTGATCAGCGAAATTGGGAACCTAATGGTATGTGTGTCTGAACTGAACTTCAAAATTTGACAATTGTTTGTATTATATATCTGTCCATAGCTGCAAAAAAAAAAGGCTTATTAGTCCATACTGAGTAAGAGTACTAACAGTTTGCTCTCTTCTACTCTACTACAATAGAAGGAAGTAATGGATACATTTTGGTTACCGCAAATGGTGGGATCAATCAACAACGGGTAGCTGTAAGTATTCTTTATCGGACAACACTTCTGAATCATTTGGGATTAACTTATTTGAAATGAGAAAAAAATTAATAAGCTTTATCTTAAATGATTGGCGTCATTTGGGCTGATTGTGAGTTGCAACAGGTTTGTAATGCTGTTGTCGTGGCCCGGTTACTCAATTCAACTTTGGTTATCCCAAAATTTATGTACAGTAGTGTATGGAGAGATACAAGGTAACACTATGTCCATTTCTCTCTCATTGTCATTACTCACATAATTACTCTGTTTTGTTTTCCCTATGTACTTTTTATTTGATGAAACCTAATATTTAGTTACTGGGTGAATGATCAGTGGAGAAATTGATTACTAGCGGCATGTTATAGTATGCGTGTGAAATTTGATCAACCAGTATTGGTTGAATTAAATTTATTATTCAGATAAATAGTTATAAGATTTATCAACAATTTTGGGGGATGGGTTGAATATACGACTTTATACTTTACCACTTCTAGCATTCTTGTTTTAACTTATTCGTGTATTTGTTGGGGAAAATGGCTTATTTGAATCTCTAGTTTTAGCTTTTTCTTGTTGTACCATTTCGATGCCACATCTGTAGTTCATGGCTTTTCTATTACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACGGAGGGAGTATGATTTTGTGACCGTCAATTTAACTTATAAATTTTTATATTGTATAATTCCATAGTCAATTCGGAGACATCTATCAGGAGGAGCATTTTATTAACAACTTGACTCCTGATATTCGGATAGTGAGGGAGCTTCCTAAAATACTACAGTCTTTGGACTTGGAGGCAATCGGCAGTGTTGTAAGTCACTCCCTTCCCTTGTAGTAAGCTAATTAAACTCAACGATATGAGTCCTATTTGTATTTAATTGTTAGAAGACTTTACCAGGTAACAGATGTTGACATGGGAAAGGAGGCCAAGCCGAGCTTTTACTTGAAACACATCCTGCCTATTATACTTAAAAATCAAGTTGTTCACTTTATTGGATTTGGGAATCGCTTGGCATTTGATCCAATACCATTTGAGCTGCAGGTAAATATCCTTCGATAATTAGACATCACAATCTAATTTTCATGATCTGATTCTTTAGCCCGGCAATGCTCTACTGTTATTAACTTTCTTAATCTCAAGCCCTATTATGCTTTTCCTAATTGAGGACTTCATCTAGAGACTTCGTTGCAGATGTAATTTTCACGCCCTGCAATTTGTTCCCAGAATACAAGAAACTGCTGGTTTGCTTCTTAAGAGGTTGCGCGGGCATGCAGGTCTTATTGGACCATTGGATCGGCATCTTGTTGGTCCATTTGGAGAATTAAATTTGGAGAAGAGTGAAAAAAGTTCCATGAAAGCTTCAAAATACTTGGCTTTACATCTCAGATTTGAAATTGACATGGTAGCTCATTCCTTATGTGAATTTGGGGGAGGCGAAGAAGAGAGGAAAGAATTGGAAGCATATCGTGAGATCCATTTTCCTGCACTGGCATTGATGAAAAATACTACTAAGTATGTATCACAATTTTTTTTATCTCAACTAGTTCTTCACTTATACTGGAAACACTTGTACTCGTCTTCTTTTAAACACAATAATTTTAATTTGTGATGAAAAATGTTTTGCTCTTTAGCTACTTTGATTTAAAGTAATTGGAGTTTTCTGTGCAGATTACCTTCTCCTTCAGAGCTCAGGTCTGAAGGGCTATGTCCATTGACACCTGAAGAATCCATCCTCATGCTTGCTGCTCTTGGCTTTAACCGCAAGACAAACATATTTGTAGCTGGTTCTAATTTGTATGGAGGTCGCTCACGGTTGGCTGCTTTGACCAGCTTGTACCCTAAATTAGTCACTAAAGAGAACTTACTTTCTTCAGCGGAACTCGAACCATTTGCTAATTATTCATCTCAGGTTTGCTGCTACTGTCATTCTTGTTTCATTTATTTCAATGATGTCACAAACCTAATTAAGCTCCTTGTTACAGTAAATCCTGTTTTGTGCACTTTTCATGTTCTATATGTTCTATAAATTGCTCCTCATATTAAACGTTTGGCGTTATTGAGGACCGGATTATTTTGGTGCTGCTGTTAGTCTTTTGATGAATGACACGGAATTATTTCTATTGTAGTTAGCAGCACTGGACTTCATAGGCTGTGCTGCCTCGGATGCATTTGCCATGACTGATTCAGGAAGTCAGCTTTCATCTTTGGTGTCTGGTTATCGAATATATTATGGTGGAGGAAGAATGCCAACAATACGTCCAAATAAGCGCAGGCTTGCTAGTATATTCATGAAAAACACTACAATAGAATGGCGTGTTTTTGAACAGAGAATGAGGAAAGCTGTCAGACAAACTAAACAT

Protein sequence

>MS.gene68863.t1

MLALAAHALAENKREPKDLWQEPLVPASSWTPCSDQRNWEPNEGSNGYILVTANGGINQQRVAVCNAVVVARLLNSTLVIPKFMYSSVWRDTSQFGDIYQEEHFINNLTPDIRIVRELPKILQSLDLEAIGSVVTDVDMGKEAKPSFYLKHILPIILKNQVVHFIGFGNRLAFDPIPFELQRLRCRCNFHALQFVPRIQETAGLLLKRLRGHAGLIGPLDRHLVGPFGELNLEKSEKSSMKASKYLALHLRFEIDMVAHSLCEFGGGEEERKELEAYREIHFPALALMKNTTKLPSPSELRSEGLCPLTPEESILMLAALGFNRKTNIFVAGSNLYGGRSRLAALTSLYPKLVTKENLLSSAELEPFANYSSQLAALDFIGCAASDAFAMTDSGSQLSSLVSGYRIYYGGGRMPTIRPNKRRLASIFMKNTTIEWRVFEQRMRKAVRQTKH