Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69080.t1 | XP_003603652.2 | 91.4 | 385 | 24 | 1 | 1 | 385 | 1 | 376 | 9.20E-200 | 706.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69080.t1 | Q08448 | 26.8 | 239 | 131 | 8 | 70 | 299 | 6 | 209 | 5.4e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69080.t1 | G7J403 | 91.4 | 385 | 24 | 1 | 1 | 385 | 1 | 376 | 6.7e-200 | 706.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69080 | MS.gene018355 | PPI |
| MS.gene69080 | MS.gene035683 | PPI |
| MS.gene66880 | MS.gene69080 | PPI |
| MS.gene69080 | MS.gene66879 | PPI |
| MS.gene012424 | MS.gene69080 | PPI |
| MS.gene046359 | MS.gene69080 | PPI |
| MS.gene69080 | MS.gene042331 | PPI |
| MS.gene038914 | MS.gene69080 | PPI |
| MS.gene57902 | MS.gene69080 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69080.t1 | MTR_3g110530 | 91.192 | 386 | 25 | 1 | 1 | 386 | 1 | 377 | 0.0 | 728 |
| MS.gene69080.t1 | MTR_4g128800 | 56.748 | 326 | 126 | 5 | 68 | 386 | 29 | 346 | 1.10e-126 | 369 |
| MS.gene69080.t1 | MTR_4g128800 | 56.748 | 326 | 126 | 5 | 68 | 386 | 29 | 346 | 2.56e-126 | 370 |
| MS.gene69080.t1 | MTR_1g040460 | 50.629 | 318 | 140 | 5 | 70 | 386 | 31 | 332 | 1.21e-104 | 313 |
| MS.gene69080.t1 | MTR_4g128800 | 60.558 | 251 | 89 | 4 | 68 | 311 | 29 | 276 | 2.29e-104 | 309 |
| MS.gene69080.t1 | MTR_8g086260 | 43.544 | 333 | 174 | 3 | 65 | 384 | 85 | 416 | 9.71e-90 | 278 |
| MS.gene69080.t1 | MTR_8g086260 | 43.544 | 333 | 174 | 3 | 65 | 384 | 85 | 416 | 1.13e-89 | 278 |
| MS.gene69080.t1 | MTR_8g086260 | 48.659 | 261 | 132 | 2 | 65 | 324 | 85 | 344 | 4.64e-82 | 256 |
| MS.gene69080.t1 | MTR_2g015960 | 42.598 | 331 | 175 | 6 | 65 | 384 | 79 | 405 | 5.02e-81 | 255 |
| MS.gene69080.t1 | MTR_8g086260 | 50.000 | 244 | 120 | 2 | 65 | 307 | 85 | 327 | 2.10e-79 | 248 |
| MS.gene69080.t1 | MTR_2g015960 | 48.193 | 249 | 124 | 3 | 65 | 311 | 18 | 263 | 2.26e-74 | 232 |
| MS.gene69080.t1 | MTR_2g015960 | 48.193 | 249 | 124 | 3 | 65 | 311 | 79 | 324 | 2.44e-73 | 232 |
| MS.gene69080.t1 | MTR_8g086260 | 48.035 | 229 | 117 | 2 | 65 | 292 | 85 | 312 | 6.73e-71 | 225 |
| MS.gene69080.t1 | MTR_8g086260 | 48.035 | 229 | 117 | 2 | 65 | 292 | 85 | 312 | 9.19e-71 | 225 |
| MS.gene69080.t1 | MTR_6g005650 | 92.941 | 85 | 6 | 0 | 137 | 221 | 210 | 294 | 5.93e-48 | 165 |
| MS.gene69080.t1 | MTR_7g405800 | 90.588 | 85 | 8 | 0 | 137 | 221 | 143 | 227 | 5.68e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69080.t1 | AT1G10040 | 58.857 | 350 | 131 | 5 | 40 | 387 | 53 | 391 | 1.05e-139 | 404 |
| MS.gene69080.t1 | AT1G10040 | 58.621 | 348 | 131 | 5 | 40 | 385 | 53 | 389 | 6.67e-139 | 402 |
| MS.gene69080.t1 | AT4G25770 | 48.953 | 382 | 150 | 8 | 24 | 387 | 43 | 397 | 6.49e-117 | 347 |
| MS.gene69080.t1 | AT4G25770 | 48.158 | 380 | 152 | 7 | 24 | 385 | 43 | 395 | 2.22e-115 | 342 |
| MS.gene69080.t1 | AT5G51180 | 52.648 | 321 | 134 | 6 | 66 | 385 | 31 | 334 | 2.38e-108 | 322 |
| MS.gene69080.t1 | AT5G51180 | 52.648 | 321 | 134 | 6 | 66 | 385 | 31 | 334 | 2.38e-108 | 322 |
| MS.gene69080.t1 | AT1G29120 | 44.643 | 336 | 164 | 6 | 62 | 384 | 94 | 420 | 8.41e-87 | 270 |
| MS.gene69080.t1 | AT1G29120 | 44.643 | 336 | 164 | 6 | 62 | 384 | 94 | 420 | 8.41e-87 | 270 |
| MS.gene69080.t1 | AT1G29120 | 44.643 | 336 | 164 | 6 | 62 | 384 | 95 | 421 | 8.46e-87 | 270 |
| MS.gene69080.t1 | AT1G29120 | 44.643 | 336 | 164 | 6 | 62 | 384 | 94 | 420 | 1.37e-86 | 269 |
| MS.gene69080.t1 | AT1G29120 | 44.510 | 337 | 164 | 7 | 62 | 384 | 94 | 421 | 5.09e-85 | 266 |
| MS.gene69080.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 62 | 330 | 94 | 354 | 1.71e-79 | 250 |
| MS.gene69080.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 62 | 330 | 94 | 354 | 2.07e-79 | 249 |
| MS.gene69080.t1 | AT1G29120 | 46.983 | 232 | 114 | 3 | 62 | 292 | 94 | 317 | 1.50e-68 | 219 |
Find 83 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTATTGATCTCTT+TGG | 0.254146 | 3.4:-95798994 | None:intergenic |
| TCTTCAACATTGACATTTGA+TGG | 0.286360 | 3.4:+95800402 | MS.gene69080:CDS |
| TTCTTTACAGGTCTGCTTTA+CGG | 0.290692 | 3.4:+95801360 | MS.gene69080:intron |
| TCATTTATAGCTCATTCTTT+AGG | 0.292897 | 3.4:+95800626 | MS.gene69080:CDS |
| TGAAGCTGAGGAACTTGTTC+TGG | 0.297008 | 3.4:-95798933 | None:intergenic |
| ACAATGTACAATAACATCAT+AGG | 0.313578 | 3.4:-95799343 | None:intergenic |
| TCTCGTCTTTCAAGGTTTCT+TGG | 0.329063 | 3.4:+95801153 | MS.gene69080:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 3.4:+95801119 | MS.gene69080:CDS |
| GCAGACGTAATAAAATTAAT+AGG | 0.342709 | 3.4:-95800797 | None:intergenic |
| TCAAGGTTTCTTGGTAAAAC+AGG | 0.346929 | 3.4:+95801162 | MS.gene69080:CDS |
| TGTATTGCAGTGCTCATAAC+TGG | 0.354392 | 3.4:+95799286 | MS.gene69080:intron |
| TCTCGCACATAATGCAATTC+AGG | 0.356007 | 3.4:+95803028 | MS.gene69080:CDS |
| CCCTACTCACTTGATCATTA+TGG | 0.358216 | 3.4:+95799127 | MS.gene69080:CDS |
| TATTTCTAAGGAACTATCTC+AGG | 0.376332 | 3.4:+95800694 | MS.gene69080:CDS |
| AAACAGCATCTCGTCTTTCA+AGG | 0.381327 | 3.4:+95801145 | MS.gene69080:CDS |
| TTACATGAATTTAATATCTT+CGG | 0.384225 | 3.4:-95801253 | None:intergenic |
| TTATGAGAGAGATATTTCTA+AGG | 0.386599 | 3.4:+95800682 | MS.gene69080:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 3.4:+95801105 | MS.gene69080:intron |
| TCTAACATGATATTCTTGAT+TGG | 0.408490 | 3.4:-95800744 | None:intergenic |
| ATTCTGAAACAACCAAATAT+AGG | 0.428684 | 3.4:-95799038 | None:intergenic |
| AAAACCCACTTCCGTTCTTC+CGG | 0.433137 | 3.4:+95801720 | MS.gene69080:CDS |
| GAACAAGTTCCTCAGCTTCA+AGG | 0.438229 | 3.4:+95798936 | MS.gene69080:CDS |
| AGAATCCAACATGATGCTAC+AGG | 0.441119 | 3.4:+95799056 | MS.gene69080:CDS |
| GATGGAGCACATCATCTATA+AGG | 0.445579 | 3.4:+95801543 | MS.gene69080:CDS |
| GATCCCAACTCACTGCTGTT+AGG | 0.448872 | 3.4:-95802968 | None:intergenic |
| GATTCACTTGGAACTTCCTC+CGG | 0.451524 | 3.4:-95801739 | None:intergenic |
| TGGTCAATGGTCTCATTGGC+AGG | 0.457879 | 3.4:+95799147 | MS.gene69080:CDS |
| AGGCCTAACAGCAGTGAGTT+GGG | 0.471656 | 3.4:+95802965 | MS.gene69080:CDS |
| ATTGAAGTTGTTGATGCATC+TGG | 0.474791 | 3.4:+95799092 | MS.gene69080:CDS |
| CACTTGATCATTATGGTCAA+TGG | 0.475369 | 3.4:+95799134 | MS.gene69080:CDS |
| CAATGTACAATAACATCATA+GGG | 0.477170 | 3.4:-95799342 | None:intergenic |
| TCCAATGTTAGTAGTGGATC+CGG | 0.480213 | 3.4:+95801760 | MS.gene69080:CDS |
| CTTCGGAGTCATGAACCATC+TGG | 0.480381 | 3.4:-95801236 | None:intergenic |
| TCCGGTAAAACTGACTTAGA+AGG | 0.481593 | 3.4:+95801778 | MS.gene69080:CDS |
| ATTATGGTCAATGGTCTCAT+TGG | 0.486288 | 3.4:+95799143 | MS.gene69080:CDS |
| CTACTAACATTGGATTCACT+TGG | 0.486876 | 3.4:-95801751 | None:intergenic |
| CCGCAAAGCAGTTTCTCAAA+AGG | 0.488387 | 3.4:+95799316 | MS.gene69080:CDS |
| TAAAACGCCACCCAAGTGTT+CGG | 0.489692 | 3.4:+95800597 | MS.gene69080:CDS |
| TTTATAGCTCATTCTTTAGG+TGG | 0.491854 | 3.4:+95800629 | MS.gene69080:CDS |
| CTTTAGGTGGCTTGATAGCA+AGG | 0.492030 | 3.4:+95800642 | MS.gene69080:CDS |
| ACCGGATCCACTACTAACAT+TGG | 0.495965 | 3.4:-95801761 | None:intergenic |
| ATGTCAGCTTCAGTGGTAGT+AGG | 0.496309 | 3.4:+95802997 | MS.gene69080:CDS |
| TTTGATGGTGTTGATGTAAC+GGG | 0.500687 | 3.4:+95800417 | MS.gene69080:CDS |
| ATAGGCAACGCGGCGTTTGA+AGG | 0.501416 | 3.4:-95801384 | None:intergenic |
| TTCCTCCGGAAGAACGGAAG+TGG | 0.502459 | 3.4:-95801725 | None:intergenic |
| AATATCTCTCTCATAAAGCT+TGG | 0.517633 | 3.4:-95800675 | None:intergenic |
| CGAATTGATGTCAGCTTCAG+TGG | 0.518375 | 3.4:+95802990 | MS.gene69080:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 3.4:+95801221 | MS.gene69080:CDS |
| CCATAATGATCAAGTGAGTA+GGG | 0.524675 | 3.4:-95799127 | None:intergenic |
| AAGGCCTAACAGCAGTGAGT+TGG | 0.525966 | 3.4:+95802964 | MS.gene69080:CDS |
| CAACATGATGCTACAGGGGA+TGG | 0.528545 | 3.4:+95799062 | MS.gene69080:CDS |
| ACGCCGCACCTTGGTTGTAG+AGG | 0.533774 | 3.4:+95800821 | MS.gene69080:CDS |
| GACTCCTAAATAGAGCTAGT+TGG | 0.537639 | 3.4:+95801521 | MS.gene69080:intron |
| CGCCGCACCTTGGTTGTAGA+GGG | 0.541933 | 3.4:+95800822 | MS.gene69080:CDS |
| ACGTCTGCAACGCCGCACCT+TGG | 0.547946 | 3.4:+95800812 | MS.gene69080:CDS |
| GTCTCTACATTTACAATGTG+TGG | 0.550977 | 3.4:-95801694 | None:intergenic |
| TATCATGTTAGAAAATATGA+AGG | 0.551374 | 3.4:+95800755 | MS.gene69080:CDS |
| TGGAACTTCCTCCGGAAGAA+CGG | 0.554903 | 3.4:-95801731 | None:intergenic |
| ACCATAATGATCAAGTGAGT+AGG | 0.561206 | 3.4:-95799128 | None:intergenic |
| GCTTATGCCCTCTACAACCA+AGG | 0.563131 | 3.4:-95800829 | None:intergenic |
| CCTAAATAGAGCTAGTTGGA+TGG | 0.569660 | 3.4:+95801525 | MS.gene69080:intron |
| TCCTCCGGAAGAACGGAAGT+GGG | 0.572858 | 3.4:-95801724 | None:intergenic |
| ACCCACTTCCGTTCTTCCGG+AGG | 0.573913 | 3.4:+95801723 | MS.gene69080:CDS |
| AGTGAATCCAATGTTAGTAG+TGG | 0.581455 | 3.4:+95801754 | MS.gene69080:CDS |
| TGAACCATCTGGAGAAGAAG+AGG | 0.582274 | 3.4:-95801225 | None:intergenic |
| CATCCCCTGTAGCATCATGT+TGG | 0.586316 | 3.4:-95799061 | None:intergenic |
| GAATCCAACATGATGCTACA+GGG | 0.588127 | 3.4:+95799057 | MS.gene69080:CDS |
| CTTGCAGAGGCAATGATCAA+AGG | 0.590642 | 3.4:+95802945 | MS.gene69080:intron |
| ATTTCTAAGGAACTATCTCA+GGG | 0.594450 | 3.4:+95800695 | MS.gene69080:CDS |
| TGGTTGTAGAGGGCATAAGC+AGG | 0.598834 | 3.4:+95800832 | MS.gene69080:CDS |
| ATTTGATGGTGTTGATGTAA+CGG | 0.601610 | 3.4:+95800416 | MS.gene69080:CDS |
| GGGAAATAGATTAGCAGAGG+AGG | 0.625847 | 3.4:+95800437 | MS.gene69080:CDS |
| GTCATAACGAATATTTGCAT+AGG | 0.638991 | 3.4:-95801402 | None:intergenic |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.644156 | 3.4:-95801222 | None:intergenic |
| GCGTAGAAACGAGCTTCCAA+AGG | 0.649589 | 3.4:+95801565 | MS.gene69080:CDS |
| AACGGGAAATAGATTAGCAG+AGG | 0.651204 | 3.4:+95800434 | MS.gene69080:CDS |
| ACAACGCTACCTTGAAGCTG+AGG | 0.662939 | 3.4:-95798945 | None:intergenic |
| GAATATTTGCATAGGCAACG+CGG | 0.666237 | 3.4:-95801394 | None:intergenic |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 3.4:-95801114 | None:intergenic |
| AATCCAACATGATGCTACAG+GGG | 0.686992 | 3.4:+95799058 | MS.gene69080:CDS |
| TGCCCTCTACAACCAAGGTG+CGG | 0.704644 | 3.4:-95800824 | None:intergenic |
| AATGTACAATAACATCATAG+GGG | 0.707394 | 3.4:-95799341 | None:intergenic |
| TTTCTAAGGAACTATCTCAG+GGG | 0.757402 | 3.4:+95800696 | MS.gene69080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGGATTTAAATTAA+AGG | - | chr3.4:95802635-95802654 | None:intergenic | 10.0% |
| !! | CAATTTATGAATATAAAAAT+TGG | - | chr3.4:95802649-95802668 | None:intergenic | 10.0% |
| !!! | TTTTTGATATATATCTTAAA+GGG | + | chr3.4:95802123-95802142 | MS.gene69080:intron | 10.0% |
| !! | AAATTAAGTATATCATATCA+CGG | - | chr3.4:95801611-95801630 | None:intergenic | 15.0% |
| !! | CTAAAGTATAATTGATTATA+GGG | + | chr3.4:95799785-95799804 | MS.gene69080:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+CGG | - | chr3.4:95801256-95801275 | None:intergenic | 15.0% |
| !!! | AAAAATATCTTTTATCTTTC+TGG | - | chr3.4:95800544-95800563 | None:intergenic | 15.0% |
| !!! | AAATCAATTTTTATCAACAT+AGG | + | chr3.4:95800154-95800173 | MS.gene69080:intron | 15.0% |
| !!! | AAGTTAAATTTTCCTATATT+TGG | + | chr3.4:95799026-95799045 | MS.gene69080:CDS | 15.0% |
| !!! | ATACATATTTTTTTACACTA+TGG | - | chr3.4:95801029-95801048 | None:intergenic | 15.0% |
| !!! | ATTTTATCTTTTTGAACAAA+TGG | + | chr3.4:95801802-95801821 | MS.gene69080:intron | 15.0% |
| !!! | CTTCAATATGTTTTTTTTTT+GGG | - | chr3.4:95799561-95799580 | None:intergenic | 15.0% |
| !!! | GAACTTTTTTTTTTTTTAGA+GGG | - | chr3.4:95802431-95802450 | None:intergenic | 15.0% |
| !!! | GTTTTTGATATATATCTTAA+AGG | + | chr3.4:95802122-95802141 | MS.gene69080:intron | 15.0% |
| !!! | TAAAGTATTAAAACTCATAT+TGG | - | chr3.4:95799187-95799206 | None:intergenic | 15.0% |
| !!! | TATTATTGTAGATATTTTGT+TGG | + | chr3.4:95802032-95802051 | MS.gene69080:intron | 15.0% |
| !!! | TCTAAAGTATAATTGATTAT+AGG | + | chr3.4:95799784-95799803 | MS.gene69080:intron | 15.0% |
| !!! | TCTTCAATATGTTTTTTTTT+TGG | - | chr3.4:95799562-95799581 | None:intergenic | 15.0% |
| !!! | TGAACTTTTTTTTTTTTTAG+AGG | - | chr3.4:95802432-95802451 | None:intergenic | 15.0% |
| !!! | TTTTATATTCATAAATTGAG+AGG | + | chr3.4:95802651-95802670 | MS.gene69080:intron | 15.0% |
| !!! | TTTTTTAAGTAATCTTCAAA+TGG | - | chr3.4:95801980-95801999 | None:intergenic | 15.0% |
| !! | AACTTATGATTATTCACTTA+TGG | + | chr3.4:95802210-95802229 | MS.gene69080:intron | 20.0% |
| !! | AAGAATTATTACATGTGTTA+AGG | + | chr3.4:95799578-95799597 | MS.gene69080:intron | 20.0% |
| !! | AATAACTTAGCTATTAACAA+TGG | + | chr3.4:95799235-95799254 | MS.gene69080:intron | 20.0% |
| !! | AATGTAAAGTGATTTATGTT+TGG | - | chr3.4:95800088-95800107 | None:intergenic | 20.0% |
| !! | AATTATGTCTTCTCAAAAAA+TGG | - | chr3.4:95799743-95799762 | None:intergenic | 20.0% |
| !! | ATGTAAAGTGATTTATGTTT+GGG | - | chr3.4:95800087-95800106 | None:intergenic | 20.0% |
| !! | GAAGATATTAAATTCATGTA+AGG | + | chr3.4:95801255-95801274 | MS.gene69080:intron | 20.0% |
| !! | GAGAATTGATTATTTGTATT+TGG | + | chr3.4:95802882-95802901 | MS.gene69080:intron | 20.0% |
| !! | GATAATAATAGAATATGCAA+TGG | - | chr3.4:95801460-95801479 | None:intergenic | 20.0% |
| !! | GCAAAATAGTAAATTTACAT+CGG | + | chr3.4:95802567-95802586 | MS.gene69080:intron | 20.0% |
| !! | GTATTCTATTCTATTACAAA+GGG | + | chr3.4:95799673-95799692 | MS.gene69080:intron | 20.0% |
| !! | GTTAATAGCTAAGTTATTAA+CGG | - | chr3.4:95799233-95799252 | None:intergenic | 20.0% |
| !! | TACAATATCTAAAAAGTTCT+AGG | + | chr3.4:95801841-95801860 | MS.gene69080:intron | 20.0% |
| !! | TATCATGTTAGAAAATATGA+AGG | + | chr3.4:95800755-95800774 | MS.gene69080:CDS | 20.0% |
| !! | TATTATATCTCTTTCTTTAC+AGG | + | chr3.4:95801348-95801367 | MS.gene69080:intron | 20.0% |
| !! | TTAAAATAAGTAGTATGACA+TGG | - | chr3.4:95802519-95802538 | None:intergenic | 20.0% |
| !! | TTAAAATACCCTTATAATAG+TGG | + | chr3.4:95802535-95802554 | MS.gene69080:intron | 20.0% |
| !!! | AACTTTCTAAAAAATGCTTA+TGG | - | chr3.4:95802375-95802394 | None:intergenic | 20.0% |
| !!! | ACAAAAAGATTTAAGTTCAA+TGG | + | chr3.4:95802401-95802420 | MS.gene69080:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr3.4:95799757-95799776 | MS.gene69080:intron | 20.0% |
| !!! | TAATCTTTAGAAAGCTATTA+AGG | - | chr3.4:95799406-95799425 | None:intergenic | 20.0% |
| ! | AAATATGAAGGAAAAATTGC+AGG | + | chr3.4:95800767-95800786 | MS.gene69080:CDS | 25.0% |
| ! | AATGTACAATAACATCATAG+GGG | - | chr3.4:95799344-95799363 | None:intergenic | 25.0% |
| ! | ACAATGTACAATAACATCAT+AGG | - | chr3.4:95799346-95799365 | None:intergenic | 25.0% |
| ! | ACTAATACAATGCATAATGT+TGG | + | chr3.4:95799509-95799528 | MS.gene69080:intron | 25.0% |
| ! | AGAAGTCTAAATAAGCTTAT+AGG | + | chr3.4:95802252-95802271 | MS.gene69080:intron | 25.0% |
| ! | CAATGTACAATAACATCATA+GGG | - | chr3.4:95799345-95799364 | None:intergenic | 25.0% |
| ! | CTTATACTAGAATGAATAGT+AGG | + | chr3.4:95802327-95802346 | MS.gene69080:intron | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | - | chr3.4:95800800-95800819 | None:intergenic | 25.0% |
| ! | GGTATTCTATTCTATTACAA+AGG | + | chr3.4:95799672-95799691 | MS.gene69080:intron | 25.0% |
| ! | GTTATTAGGGGTAATTAAAT+AGG | + | chr3.4:95800992-95801011 | MS.gene69080:intron | 25.0% |
| ! | GTTCTTAATCATTAGAATAG+AGG | - | chr3.4:95802785-95802804 | None:intergenic | 25.0% |
| ! | TCATTTATAGCTCATTCTTT+AGG | + | chr3.4:95800626-95800645 | MS.gene69080:CDS | 25.0% |
| ! | TCTAACATGATATTCTTGAT+TGG | - | chr3.4:95800747-95800766 | None:intergenic | 25.0% |
| ! | TGAACTAAAACAAAAGGATA+CGG | - | chr3.4:95801427-95801446 | None:intergenic | 25.0% |
| ! | TGATGCATTACATTAAATGA+TGG | - | chr3.4:95800353-95800372 | None:intergenic | 25.0% |
| ! | TTCATGTAAGGTTTATTGTT+CGG | + | chr3.4:95801267-95801286 | MS.gene69080:intron | 25.0% |
| ! | TTCTCAAATGTTAACAAAGT+GGG | - | chr3.4:95801871-95801890 | None:intergenic | 25.0% |
| ! | TTTCACAATCAAATCAAAAC+TGG | + | chr3.4:95800324-95800343 | MS.gene69080:intron | 25.0% |
| ! | TTTCTCAAATGTTAACAAAG+TGG | - | chr3.4:95801872-95801891 | None:intergenic | 25.0% |
| ! | TTTCTTCTTATTGATCTCTT+TGG | - | chr3.4:95798997-95799016 | None:intergenic | 25.0% |
| !! | AATATGTCTTTTCCAATTCA+AGG | - | chr3.4:95802737-95802756 | None:intergenic | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+CGG | - | chr3.4:95801330-95801349 | None:intergenic | 25.0% |
| !! | TGTTTCTGAACTAAAACAAA+AGG | - | chr3.4:95801433-95801452 | None:intergenic | 25.0% |
| !! | TTATGAGAGAGATATTTCTA+AGG | + | chr3.4:95800682-95800701 | MS.gene69080:CDS | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr3.4:95801089-95801108 | MS.gene69080:intron | 25.0% |
| !! | TTTTGAATGAATTGAGTTTG+TGG | - | chr3.4:95800137-95800156 | None:intergenic | 25.0% |
| !!! | ATTCTGAAACAACCAAATAT+AGG | - | chr3.4:95799041-95799060 | None:intergenic | 25.0% |
| AATATCTCTCTCATAAAGCT+TGG | - | chr3.4:95800678-95800697 | None:intergenic | 30.0% | |
| ACAGATAATATGCATTATGC+AGG | - | chr3.4:95802820-95802839 | None:intergenic | 30.0% | |
| ACATCACTCCACTATTATAA+GGG | - | chr3.4:95802546-95802565 | None:intergenic | 30.0% | |
| AGCCTTGAATTTATTGTTCA+AGG | + | chr3.4:95800043-95800062 | MS.gene69080:intron | 30.0% | |
| AGTAGTATGACATGGAAAAA+TGG | - | chr3.4:95802511-95802530 | None:intergenic | 30.0% | |
| ATGTATAATGTGGTACCTAT+GGG | + | chr3.4:95802692-95802711 | MS.gene69080:intron | 30.0% | |
| GCTATTAAGGAAGAAAAAGA+AGG | - | chr3.4:95799393-95799412 | None:intergenic | 30.0% | |
| GTCATAACGAATATTTGCAT+AGG | - | chr3.4:95801405-95801424 | None:intergenic | 30.0% | |
| TAAAGGGAGAAAATGTTCTA+AGG | + | chr3.4:95802139-95802158 | MS.gene69080:intron | 30.0% | |
| TAACTGATATAACCTGAGAA+AGG | - | chr3.4:95800577-95800596 | None:intergenic | 30.0% | |
| TATAACATGAAGCCAGAATT+TGG | + | chr3.4:95799994-95800013 | MS.gene69080:intron | 30.0% | |
| TATGTCATACTAATCTGTGT+TGG | + | chr3.4:95801046-95801065 | MS.gene69080:intron | 30.0% | |
| TCTTCAACATTGACATTTGA+TGG | + | chr3.4:95800402-95800421 | MS.gene69080:CDS | 30.0% | |
| TGCCTTGAACAATAAATTCA+AGG | - | chr3.4:95800048-95800067 | None:intergenic | 30.0% | |
| TGGCTTCATGTTATAATCAA+GGG | - | chr3.4:95799989-95800008 | None:intergenic | 30.0% | |
| TTAAGGAAGAAAAAGAAGGA+AGG | - | chr3.4:95799389-95799408 | None:intergenic | 30.0% | |
| TTGTGTACACATGTATAATG+TGG | + | chr3.4:95802682-95802701 | MS.gene69080:intron | 30.0% | |
| TTTATAGCTCATTCTTTAGG+TGG | + | chr3.4:95800629-95800648 | MS.gene69080:CDS | 30.0% | |
| ! | AATGAAATTTTCCGAACACT+TGG | - | chr3.4:95800611-95800630 | None:intergenic | 30.0% |
| ! | ATAATTTTACACTGACATCC+AGG | + | chr3.4:95802476-95802495 | MS.gene69080:intron | 30.0% |
| ! | ATACTTTTGCGAGATCAAAT+GGG | + | chr3.4:95801927-95801946 | MS.gene69080:intron | 30.0% |
| ! | ATGAAATTTTCCGAACACTT+GGG | - | chr3.4:95800610-95800629 | None:intergenic | 30.0% |
| ! | ATTTCTAAGGAACTATCTCA+GGG | + | chr3.4:95800695-95800714 | MS.gene69080:CDS | 30.0% |
| ! | CAACAGAATGTTTCTATCTT+TGG | + | chr3.4:95799925-95799944 | MS.gene69080:intron | 30.0% |
| ! | TAATTTTACACTGACATCCA+GGG | + | chr3.4:95802477-95802496 | MS.gene69080:intron | 30.0% |
| ! | TATTTCTAAGGAACTATCTC+AGG | + | chr3.4:95800694-95800713 | MS.gene69080:CDS | 30.0% |
| ! | TGTATACCCCAAAATTTGTT+GGG | - | chr3.4:95799642-95799661 | None:intergenic | 30.0% |
| ! | TTGAACAAATGGATTTCATC+TGG | + | chr3.4:95801813-95801832 | MS.gene69080:intron | 30.0% |
| !! | AAATGTTCTAAGGTCTAGTT+TGG | + | chr3.4:95802149-95802168 | MS.gene69080:intron | 30.0% |
| !! | ATTTGATGGTGTTGATGTAA+CGG | + | chr3.4:95800416-95800435 | MS.gene69080:CDS | 30.0% |
| !! | TGATTTTCACAACTTGCTTA+TGG | + | chr3.4:95801296-95801315 | MS.gene69080:intron | 30.0% |
| !! | TTTCTTAACTTGTGCATTGA+GGG | + | chr3.4:95799948-95799967 | MS.gene69080:intron | 30.0% |
| !! | TTTTTCCACTTTTGCTTTCA+TGG | - | chr3.4:95801953-95801972 | None:intergenic | 30.0% |
| !!! | CTTGTCTCTGAGATTTATTT+TGG | + | chr3.4:95800280-95800299 | MS.gene69080:intron | 30.0% |
| !!! | GATTTTTTTCACAGTTAGTG+AGG | + | chr3.4:95800252-95800271 | MS.gene69080:intron | 30.0% |
| !!! | TCTCGTGTCTTTTAAAATGT+CGG | - | chr3.4:95801669-95801688 | None:intergenic | 30.0% |
| !!! | TTTTTTCTATCTCCTTTCTC+AGG | + | chr3.4:95800562-95800581 | MS.gene69080:intron | 30.0% |
| AATTTCTGTCTCCTTTACTG+TGG | + | chr3.4:95800945-95800964 | MS.gene69080:intron | 35.0% | |
| ACCATAATGATCAAGTGAGT+AGG | - | chr3.4:95799131-95799150 | None:intergenic | 35.0% | |
| AGTAAATTTACATCGGACGT+CGG | + | chr3.4:95802574-95802593 | MS.gene69080:intron | 35.0% | |
| AGTATGACATGGAAAAATGG+TGG | - | chr3.4:95802508-95802527 | None:intergenic | 35.0% | |
| AGTGAATCCAATGTTAGTAG+TGG | + | chr3.4:95801754-95801773 | MS.gene69080:CDS | 35.0% | |
| ATTATGGTCAATGGTCTCAT+TGG | + | chr3.4:95799143-95799162 | MS.gene69080:CDS | 35.0% | |
| ATTGAAGTTGTTGATGCATC+TGG | + | chr3.4:95799092-95799111 | MS.gene69080:CDS | 35.0% | |
| CACATCACTCCACTATTATA+AGG | - | chr3.4:95802547-95802566 | None:intergenic | 35.0% | |
| CACTTGATCATTATGGTCAA+TGG | + | chr3.4:95799134-95799153 | MS.gene69080:CDS | 35.0% | |
| CATGTATAATGTGGTACCTA+TGG | + | chr3.4:95802691-95802710 | MS.gene69080:intron | 35.0% | |
| CCATAATGATCAAGTGAGTA+GGG | - | chr3.4:95799130-95799149 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTAG+GGG | + | chr3.4:95800980-95800999 | MS.gene69080:intron | 35.0% | |
| CTACTAACATTGGATTCACT+TGG | - | chr3.4:95801754-95801773 | None:intergenic | 35.0% | |
| CTCTAATCTTTGTCTGTCTT+AGG | + | chr3.4:95800484-95800503 | MS.gene69080:intron | 35.0% | |
| CTGGCTTCATGTTATAATCA+AGG | - | chr3.4:95799990-95800009 | None:intergenic | 35.0% | |
| GAGTGAAATCCACATAACAA+AGG | - | chr3.4:95801117-95801136 | None:intergenic | 35.0% | |
| GCAATGACTATGTGTTTGTT+TGG | - | chr3.4:95800181-95800200 | None:intergenic | 35.0% | |
| GCTACAAGTGATGGTTATTA+GGG | + | chr3.4:95800979-95800998 | MS.gene69080:intron | 35.0% | |
| GTCTCTACATTTACAATGTG+TGG | - | chr3.4:95801697-95801716 | None:intergenic | 35.0% | |
| GTGTATACCCCAAAATTTGT+TGG | - | chr3.4:95799643-95799662 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr3.4:95801119-95801138 | MS.gene69080:CDS | 35.0% | |
| TATTACAAAGGGTGAAACCT+TGG | + | chr3.4:95799684-95799703 | MS.gene69080:intron | 35.0% | |
| TCAAGGCTAAATATCAATCG+TGG | - | chr3.4:95800031-95800050 | None:intergenic | 35.0% | |
| TCAAGGTTTCTTGGTAAAAC+AGG | + | chr3.4:95801162-95801181 | MS.gene69080:CDS | 35.0% | |
| TCATGTAAACTTACAGACAG+TGG | - | chr3.4:95801494-95801513 | None:intergenic | 35.0% | |
| TCTTTCTGGATTTGATGCAA+TGG | - | chr3.4:95800530-95800549 | None:intergenic | 35.0% | |
| TGCTACAAGTGATGGTTATT+AGG | + | chr3.4:95800978-95800997 | MS.gene69080:intron | 35.0% | |
| TGTATAATGTGGTACCTATG+GGG | + | chr3.4:95802693-95802712 | MS.gene69080:intron | 35.0% | |
| TTCTTTACAGGTCTGCTTTA+CGG | + | chr3.4:95801360-95801379 | MS.gene69080:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr3.4:95801071-95801090 | MS.gene69080:intron | 35.0% |
| ! | ACCTTCTAAGTCAGTTTTAC+CGG | - | chr3.4:95801782-95801801 | None:intergenic | 35.0% |
| ! | AGGTTTTTCATTCTTGCCAT+CGG | - | chr3.4:95801205-95801224 | None:intergenic | 35.0% |
| ! | CATACTTTTGCGAGATCAAA+TGG | + | chr3.4:95801926-95801945 | MS.gene69080:intron | 35.0% |
| ! | CTTATAATAGTGGAGTGATG+TGG | + | chr3.4:95802545-95802564 | MS.gene69080:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr3.4:95801105-95801124 | MS.gene69080:intron | 35.0% |
| ! | CTTTTCCAATTCAAGGAACA+CGG | - | chr3.4:95802730-95802749 | None:intergenic | 35.0% |
| ! | GCATAAGCAGGTAATTCTTT+TGG | + | chr3.4:95800844-95800863 | MS.gene69080:intron | 35.0% |
| ! | TCTTGCCATCGGTTAAAAAT+AGG | - | chr3.4:95801194-95801213 | None:intergenic | 35.0% |
| ! | TTGTGGTCCCAACAAATTTT+GGG | + | chr3.4:95799632-95799651 | MS.gene69080:intron | 35.0% |
| ! | TTTCTAAGGAACTATCTCAG+GGG | + | chr3.4:95800696-95800715 | MS.gene69080:CDS | 35.0% |
| ! | TTTTCCAATTCAAGGAACAC+GGG | - | chr3.4:95802729-95802748 | None:intergenic | 35.0% |
| !! | AAGGAAGGTGTTAGGATTTA+AGG | - | chr3.4:95799374-95799393 | None:intergenic | 35.0% |
| !! | AATTACATTGTTTCTGCCTC+TGG | + | chr3.4:95802850-95802869 | MS.gene69080:intron | 35.0% |
| !! | AGAAAAAGAAGGAAGGTGTT+AGG | - | chr3.4:95799382-95799401 | None:intergenic | 35.0% |
| !! | AGGAAGGTGTTAGGATTTAA+GGG | - | chr3.4:95799373-95799392 | None:intergenic | 35.0% |
| !! | ATTATGCAGGCTTGTTTTCA+AGG | - | chr3.4:95802807-95802826 | None:intergenic | 35.0% |
| !! | GTTTCTTAACTTGTGCATTG+AGG | + | chr3.4:95799947-95799966 | MS.gene69080:intron | 35.0% |
| !! | TTTGATGGTGTTGATGTAAC+GGG | + | chr3.4:95800417-95800436 | MS.gene69080:CDS | 35.0% |
| !!! | AAGCACCTATTTTTAACCGA+TGG | + | chr3.4:95801186-95801205 | MS.gene69080:CDS | 35.0% |
| AAACAGCATCTCGTCTTTCA+AGG | + | chr3.4:95801145-95801164 | MS.gene69080:CDS | 40.0% | |
| AACGGGAAATAGATTAGCAG+AGG | + | chr3.4:95800434-95800453 | MS.gene69080:CDS | 40.0% | |
| AATCCAACATGATGCTACAG+GGG | + | chr3.4:95799058-95799077 | MS.gene69080:CDS | 40.0% | |
| AATTCTCCATCTTCAACCAG+AGG | - | chr3.4:95802869-95802888 | None:intergenic | 40.0% | |
| ACATAGAGACAGGTGAAACT+AGG | - | chr3.4:95799611-95799630 | None:intergenic | 40.0% | |
| AGAATCCAACATGATGCTAC+AGG | + | chr3.4:95799056-95799075 | MS.gene69080:CDS | 40.0% | |
| AGTGATGACAATACTTGCAG+AGG | + | chr3.4:95802932-95802951 | MS.gene69080:intron | 40.0% | |
| AGTGCTTATCTTTCGAGCTT+TGG | - | chr3.4:95801902-95801921 | None:intergenic | 40.0% | |
| AGTGTAATCAGCCACAGTAA+AGG | - | chr3.4:95800959-95800978 | None:intergenic | 40.0% | |
| ATTCTTAACCTGTGCCCTAA+GGG | - | chr3.4:95799826-95799845 | None:intergenic | 40.0% | |
| CCCTACTCACTTGATCATTA+TGG | + | chr3.4:95799127-95799146 | MS.gene69080:CDS | 40.0% | |
| CCTAAATAGAGCTAGTTGGA+TGG | + | chr3.4:95801525-95801544 | MS.gene69080:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr3.4:95801397-95801416 | None:intergenic | 40.0% | |
| GAATCCAACATGATGCTACA+GGG | + | chr3.4:95799057-95799076 | MS.gene69080:CDS | 40.0% | |
| GACTCCTAAATAGAGCTAGT+TGG | + | chr3.4:95801521-95801540 | MS.gene69080:intron | 40.0% | |
| GATGCAGAAACTCCAAATTC+TGG | - | chr3.4:95800009-95800028 | None:intergenic | 40.0% | |
| GATGGAGCACATCATCTATA+AGG | + | chr3.4:95801543-95801562 | MS.gene69080:CDS | 40.0% | |
| GATTACACTGCTACAAGTGA+TGG | + | chr3.4:95800970-95800989 | MS.gene69080:intron | 40.0% | |
| GTATAATGTGGTACCTATGG+GGG | + | chr3.4:95802694-95802713 | MS.gene69080:intron | 40.0% | |
| TCTCGCACATAATGCAATTC+AGG | + | chr3.4:95803028-95803047 | MS.gene69080:CDS | 40.0% | |
| TCTCGTCTTTCAAGGTTTCT+TGG | + | chr3.4:95801153-95801172 | MS.gene69080:CDS | 40.0% | |
| TGAAGGAAAAATTGCAGGAC+TGG | + | chr3.4:95800772-95800791 | MS.gene69080:CDS | 40.0% | |
| TGTATTGCAGTGCTCATAAC+TGG | + | chr3.4:95799286-95799305 | MS.gene69080:intron | 40.0% | |
| TTAGAATAGAGGATGCACAG+AGG | - | chr3.4:95802774-95802793 | None:intergenic | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr3.4:95801065-95801084 | MS.gene69080:intron | 40.0% | |
| ! | AAATTTTCCGAACACTTGGG+TGG | - | chr3.4:95800607-95800626 | None:intergenic | 40.0% |
| ! | CTCAGTTGTCTTTTTCTCGA+GGG | + | chr3.4:95802071-95802090 | MS.gene69080:intron | 40.0% |
| ! | CTTGTGGTCCCAACAAATTT+TGG | + | chr3.4:95799631-95799650 | MS.gene69080:intron | 40.0% |
| ! | TCCGGTAAAACTGACTTAGA+AGG | + | chr3.4:95801778-95801797 | MS.gene69080:CDS | 40.0% |
| ! | TCTCAGTTGTCTTTTTCTCG+AGG | + | chr3.4:95802070-95802089 | MS.gene69080:intron | 40.0% |
| ! | TGCATCACTATTTTGCATGC+AGG | + | chr3.4:95800366-95800385 | MS.gene69080:intron | 40.0% |
| ! | TGTGGTCCCAACAAATTTTG+GGG | + | chr3.4:95799633-95799652 | MS.gene69080:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr3.4:95799809-95799828 | MS.gene69080:intron | 40.0% |
| !! | CCATCCAACTAGCTCTATTT+AGG | - | chr3.4:95801528-95801547 | None:intergenic | 40.0% |
| !! | CCTTTTGAGAAACTGCTTTG+CGG | - | chr3.4:95799319-95799338 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr3.4:95799808-95799827 | MS.gene69080:intron | 40.0% |
| !! | TCCAATGTTAGTAGTGGATC+CGG | + | chr3.4:95801760-95801779 | MS.gene69080:CDS | 40.0% |
| AAAACCCACTTCCGTTCTTC+CGG | + | chr3.4:95801720-95801739 | MS.gene69080:CDS | 45.0% | |
| AATGGTCTCATTGGCAGGTT+TGG | + | chr3.4:95799152-95799171 | MS.gene69080:intron | 45.0% | |
| ACCGGATCCACTACTAACAT+TGG | - | chr3.4:95801764-95801783 | None:intergenic | 45.0% | |
| ATCACGGTGCATGAGTTTGA+CGG | - | chr3.4:95801595-95801614 | None:intergenic | 45.0% | |
| ATGGGCCATGAAAGCAAAAG+TGG | + | chr3.4:95801945-95801964 | MS.gene69080:intron | 45.0% | |
| ATGTCAGCTTCAGTGGTAGT+AGG | + | chr3.4:95802997-95803016 | MS.gene69080:CDS | 45.0% | |
| CCGCAAAGCAGTTTCTCAAA+AGG | + | chr3.4:95799316-95799335 | MS.gene69080:CDS | 45.0% | |
| CGAATTGATGTCAGCTTCAG+TGG | + | chr3.4:95802990-95803009 | MS.gene69080:CDS | 45.0% | |
| CTTGCAGAGGCAATGATCAA+AGG | + | chr3.4:95802945-95802964 | MS.gene69080:intron | 45.0% | |
| GAAAAATGGTGGTTTCTCCC+TGG | - | chr3.4:95802497-95802516 | None:intergenic | 45.0% | |
| GAACAAGTTCCTCAGCTTCA+AGG | + | chr3.4:95798936-95798955 | MS.gene69080:CDS | 45.0% | |
| GATTCACTTGGAACTTCCTC+CGG | - | chr3.4:95801742-95801761 | None:intergenic | 45.0% | |
| GATTCTTAACCTGTGCCCTA+AGG | - | chr3.4:95799827-95799846 | None:intergenic | 45.0% | |
| GGGAAATAGATTAGCAGAGG+AGG | + | chr3.4:95800437-95800456 | MS.gene69080:CDS | 45.0% | |
| TAAAACGCCACCCAAGTGTT+CGG | + | chr3.4:95800597-95800616 | MS.gene69080:CDS | 45.0% | |
| TCACCTGTCTCTATGTCTTG+TGG | + | chr3.4:95799615-95799634 | MS.gene69080:intron | 45.0% | |
| TGAACCATCTGGAGAAGAAG+AGG | - | chr3.4:95801228-95801247 | None:intergenic | 45.0% | |
| TGAGTTTGACGGTCTACCTT+TGG | - | chr3.4:95801584-95801603 | None:intergenic | 45.0% | |
| TGGGGTATACACTTCTTGCT+TGG | + | chr3.4:95799651-95799670 | MS.gene69080:intron | 45.0% | |
| TTGACCCGTGTTCCTTGAAT+TGG | + | chr3.4:95802722-95802741 | MS.gene69080:intron | 45.0% | |
| TTTCTGCCTCTGGTTGAAGA+TGG | + | chr3.4:95802860-95802879 | MS.gene69080:intron | 45.0% | |
| ! | CTTTAGGTGGCTTGATAGCA+AGG | + | chr3.4:95800642-95800661 | MS.gene69080:CDS | 45.0% |
| ! | TGAAGCTGAGGAACTTGTTC+TGG | - | chr3.4:95798936-95798955 | None:intergenic | 45.0% |
| ! | TTGGTTCGCAAGTGTATGCT+TGG | + | chr3.4:95799715-95799734 | MS.gene69080:intron | 45.0% |
| AAGGCCTAACAGCAGTGAGT+TGG | + | chr3.4:95802964-95802983 | MS.gene69080:CDS | 50.0% | |
| ACAACGCTACCTTGAAGCTG+AGG | - | chr3.4:95798948-95798967 | None:intergenic | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr3.4:95801225-95801244 | None:intergenic | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr3.4:95801221-95801240 | MS.gene69080:CDS | 50.0% | |
| AGGCCTAACAGCAGTGAGTT+GGG | + | chr3.4:95802965-95802984 | MS.gene69080:CDS | 50.0% | |
| CAACATGATGCTACAGGGGA+TGG | + | chr3.4:95799062-95799081 | MS.gene69080:CDS | 50.0% | |
| CATCCCCTGTAGCATCATGT+TGG | - | chr3.4:95799064-95799083 | None:intergenic | 50.0% | |
| CGGGTCAAATATTCCCCCAT+AGG | - | chr3.4:95802710-95802729 | None:intergenic | 50.0% | |
| CTTCGGAGTCATGAACCATC+TGG | - | chr3.4:95801239-95801258 | None:intergenic | 50.0% | |
| GATCCCAACTCACTGCTGTT+AGG | - | chr3.4:95802971-95802990 | None:intergenic | 50.0% | |
| GCGTAGAAACGAGCTTCCAA+AGG | + | chr3.4:95801565-95801584 | MS.gene69080:CDS | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr3.4:95800832-95800851 | None:intergenic | 50.0% | |
| GGACCACAAGACATAGAGAC+AGG | - | chr3.4:95799621-95799640 | None:intergenic | 50.0% | |
| TGGAACTTCCTCCGGAAGAA+CGG | - | chr3.4:95801734-95801753 | None:intergenic | 50.0% | |
| TGGTCAATGGTCTCATTGGC+AGG | + | chr3.4:95799147-95799166 | MS.gene69080:CDS | 50.0% | |
| ! | AGGAGGTGTGTGATGGTCTT+TGG | + | chr3.4:95800454-95800473 | MS.gene69080:intron | 50.0% |
| ! | TGGTTGTAGAGGGCATAAGC+AGG | + | chr3.4:95800832-95800851 | MS.gene69080:CDS | 50.0% |
| ! | TTAGCAGAGGAGGTGTGTGA+TGG | + | chr3.4:95800447-95800466 | MS.gene69080:intron | 50.0% |
| !! | TGAAACCTTGGTGCTGTGGT+TGG | + | chr3.4:95799696-95799715 | MS.gene69080:intron | 50.0% |
| AACTTGTGCCCTTAGGGCAC+AGG | + | chr3.4:95799815-95799834 | MS.gene69080:intron | 55.0% | |
| ATAGGCAACGCGGCGTTTGA+AGG | - | chr3.4:95801387-95801406 | None:intergenic | 55.0% | |
| TCCTCCGGAAGAACGGAAGT+GGG | - | chr3.4:95801727-95801746 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr3.4:95800827-95800846 | None:intergenic | 55.0% | |
| TTCCTCCGGAAGAACGGAAG+TGG | - | chr3.4:95801728-95801747 | None:intergenic | 55.0% | |
| !! | AGGGTGAAACCTTGGTGCTG+TGG | + | chr3.4:95799692-95799711 | MS.gene69080:intron | 55.0% |
| ACCCACTTCCGTTCTTCCGG+AGG | + | chr3.4:95801723-95801742 | MS.gene69080:CDS | 60.0% | |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr3.4:95800821-95800840 | MS.gene69080:CDS | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr3.4:95800822-95800841 | MS.gene69080:CDS | 60.0% | |
| GCGAACCAACCACAGCACCA+AGG | - | chr3.4:95799704-95799723 | None:intergenic | 60.0% | |
| ACGTCTGCAACGCCGCACCT+TGG | + | chr3.4:95800812-95800831 | MS.gene69080:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95798927 | 95803058 | 95798927 | ID=MS.gene69080 |
| chr3.4 | mRNA | 95798927 | 95803058 | 95798927 | ID=MS.gene69080.t1;Parent=MS.gene69080 |
| chr3.4 | exon | 95798927 | 95799168 | 95798927 | ID=MS.gene69080.t1.exon1;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95798927 | 95799168 | 95798927 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95799296 | 95799363 | 95799296 | ID=MS.gene69080.t1.exon2;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95799296 | 95799363 | 95799296 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95800388 | 95800458 | 95800388 | ID=MS.gene69080.t1.exon3;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95800388 | 95800458 | 95800388 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95800584 | 95800853 | 95800584 | ID=MS.gene69080.t1.exon4;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95800584 | 95800853 | 95800584 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95801111 | 95801271 | 95801111 | ID=MS.gene69080.t1.exon5;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95801111 | 95801271 | 95801111 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95801370 | 95801425 | 95801370 | ID=MS.gene69080.t1.exon6;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95801370 | 95801425 | 95801370 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95801534 | 95801586 | 95801534 | ID=MS.gene69080.t1.exon7;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95801534 | 95801586 | 95801534 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95801664 | 95801799 | 95801664 | ID=MS.gene69080.t1.exon8;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95801664 | 95801799 | 95801664 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| chr3.4 | exon | 95802952 | 95803058 | 95802952 | ID=MS.gene69080.t1.exon9;Parent=MS.gene69080.t1 |
| chr3.4 | CDS | 95802952 | 95803058 | 95802952 | ID=cds.MS.gene69080.t1;Parent=MS.gene69080.t1 |
| Gene Sequence |
| Protein sequence |
