Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69319.t1 | AFK36584.1 | 99.2 | 122 | 1 | 0 | 1 | 122 | 1 | 122 | 6.20E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69319.t1 | P26585 | 63.6 | 121 | 43 | 1 | 1 | 121 | 1 | 120 | 3.1e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69319.t1 | I3S988 | 95.1 | 122 | 6 | 0 | 1 | 122 | 1 | 122 | 4.5e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69319.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03201 | MS.gene69319 | PPI |
| MS.gene013786 | MS.gene69319 | PPI |
| MS.gene02572 | MS.gene69319 | PPI |
| MS.gene46264 | MS.gene69319 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69319.t1 | MTR_3g115580 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 9.43e-103 | 291 |
| MS.gene69319.t1 | MTR_8g073345 | 60.432 | 139 | 46 | 5 | 5 | 143 | 3 | 132 | 7.41e-41 | 134 |
| MS.gene69319.t1 | MTR_5g024180 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.80e-37 | 125 |
| MS.gene69319.t1 | MTR_8g073345 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 2.25e-37 | 125 |
| MS.gene69319.t1 | MTR_7g068280 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 7.42e-36 | 122 |
| MS.gene69319.t1 | MTR_7g082820 | 63.855 | 83 | 29 | 1 | 34 | 116 | 2 | 83 | 1.59e-29 | 105 |
| MS.gene69319.t1 | MTR_1g115220 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 7.05e-27 | 100 |
| MS.gene69319.t1 | MTR_5g024180 | 57.778 | 90 | 34 | 2 | 51 | 137 | 2 | 90 | 7.39e-24 | 89.7 |
| MS.gene69319.t1 | MTR_4g094622 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 5.44e-23 | 89.0 |
| MS.gene69319.t1 | MTR_1g022345 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.42e-12 | 64.7 |
| MS.gene69319.t1 | MTR_8g099305 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 3.77e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69319.t1 | AT1G20693 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 9.88e-54 | 167 |
| MS.gene69319.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.46e-47 | 151 |
| MS.gene69319.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.51e-47 | 151 |
| MS.gene69319.t1 | AT1G20696 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.19e-46 | 146 |
| MS.gene69319.t1 | AT2G17560 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.04e-41 | 135 |
| MS.gene69319.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene69319.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene69319.t1 | AT1G20696 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.56e-41 | 134 |
| MS.gene69319.t1 | AT1G20696 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.07e-40 | 134 |
| MS.gene69319.t1 | AT3G51880 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.49e-39 | 132 |
| MS.gene69319.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene69319.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene69319.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene69319.t1 | AT3G51880 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.41e-37 | 125 |
| MS.gene69319.t1 | AT1G20696 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.56e-33 | 114 |
| MS.gene69319.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene69319.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene69319.t1 | AT1G20696 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.80e-28 | 101 |
| MS.gene69319.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene69319.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene69319.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene69319.t1 | AT2G34450 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.07e-18 | 75.9 |
| MS.gene69319.t1 | AT5G23420 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.31e-15 | 71.6 |
| MS.gene69319.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 9.97e-12 | 62.0 |
| MS.gene69319.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.04e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3.1:+91596194 | None:intergenic |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3.1:+91595513 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3.1:+91596482 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3.1:+91596500 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3.1:+91596185 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3.1:+91596203 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3.1:+91596221 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3.1:+91595807 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3.1:+91596217 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3.1:+91596238 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3.1:-91595392 | MS.gene69319:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3.1:-91595708 | MS.gene69319:intron |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3.1:+91596494 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3.1:+91596244 | None:intergenic |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3.1:-91595698 | MS.gene69319:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3.1:-91595509 | MS.gene69319:intron |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3.1:+91596195 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3.1:+91595398 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3.1:+91596265 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3.1:+91595808 | None:intergenic |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3.1:-91595555 | MS.gene69319:CDS |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3.1:-91595405 | MS.gene69319:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3.1:-91596255 | MS.gene69319:CDS |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3.1:-91596234 | MS.gene69319:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3.1:-91596273 | MS.gene69319:CDS |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3.1:-91596228 | MS.gene69319:CDS |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3.1:-91595422 | MS.gene69319:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3.1:+91596473 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3.1:+91596176 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3.1:-91596219 | MS.gene69319:CDS |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3.1:-91595391 | MS.gene69319:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3.1:-91596254 | MS.gene69319:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3.1:-91596247 | MS.gene69319:CDS |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3.1:+91596173 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3.1:-91596511 | MS.gene69319:CDS |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3.1:+91596247 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3.1:-91595357 | MS.gene69319:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3.1:-91596251 | MS.gene69319:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3.1:-91596272 | MS.gene69319:CDS |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3.1:-91595527 | MS.gene69319:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3.1:-91595345 | MS.gene69319:CDS |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3.1:-91595341 | MS.gene69319:CDS |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3.1:-91596510 | MS.gene69319:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3.1:-91596233 | MS.gene69319:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3.1:-91595551 | MS.gene69319:CDS |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3.1:-91595330 | MS.gene69319:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | + | chr3.1:91595695-91595714 | None:intergenic | 10.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | + | chr3.1:91595282-91595301 | None:intergenic | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | - | chr3.1:91596074-91596093 | MS.gene69319:intron | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | - | chr3.1:91595435-91595454 | MS.gene69319:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | - | chr3.1:91595858-91595877 | MS.gene69319:intron | 20.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | - | chr3.1:91595869-91595888 | MS.gene69319:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | - | chr3.1:91596302-91596321 | MS.gene69319:intron | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | - | chr3.1:91595328-91595347 | MS.gene69319:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | - | chr3.1:91596262-91596281 | MS.gene69319:CDS | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | - | chr3.1:91596261-91596280 | MS.gene69319:CDS | 25.0% |
| ! | TTTGTTGAATATCACTTTGT+AGG | - | chr3.1:91596444-91596463 | MS.gene69319:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | - | chr3.1:91595389-91595408 | MS.gene69319:CDS | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | - | chr3.1:91595439-91595458 | MS.gene69319:intron | 25.0% |
| AGAATATGAGAAAACCATGA+AGG | - | chr3.1:91596204-91596223 | MS.gene69319:CDS | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | + | chr3.1:91595299-91595318 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | - | chr3.1:91595868-91595887 | MS.gene69319:intron | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | - | chr3.1:91595327-91595346 | MS.gene69319:intron | 30.0% | |
| TAAATGCAAATTGGGTAACT+AGG | - | chr3.1:91596270-91596289 | MS.gene69319:CDS | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | + | chr3.1:91595977-91595996 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | - | chr3.1:91596007-91596026 | MS.gene69319:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | - | chr3.1:91596011-91596030 | MS.gene69319:intron | 30.0% |
| ! | TTTCTTGTTATATGCCTTCA+TGG | + | chr3.1:91596221-91596240 | None:intergenic | 30.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | + | chr3.1:91595822-91595841 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | - | chr3.1:91596124-91596143 | MS.gene69319:intron | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | + | chr3.1:91596122-91596141 | None:intergenic | 35.0% | |
| GCATATAACAAGAAACAGGT+CGG | - | chr3.1:91596226-91596245 | MS.gene69319:CDS | 35.0% | |
| GGATTGAACTTACTTAGCAT+CGG | + | chr3.1:91595261-91595280 | None:intergenic | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | - | chr3.1:91596141-91596160 | MS.gene69319:intron | 35.0% | |
| TAAGGCCAGTAAAACAACAA+CGG | + | chr3.1:91595959-91595978 | None:intergenic | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | - | chr3.1:91596493-91596512 | MS.gene69319:CDS | 35.0% | |
| ! | CAGTCATAACTGTTTTCACA+CGG | + | chr3.1:91595785-91595804 | None:intergenic | 35.0% |
| ! | CTGTATATGAATTTTGCAGG+TGG | - | chr3.1:91596010-91596029 | MS.gene69319:intron | 35.0% |
| ! | GAAGGCATATAACAAGAAAC+AGG | - | chr3.1:91596222-91596241 | MS.gene69319:CDS | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | - | chr3.1:91595880-91595899 | MS.gene69319:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr3.1:91595561-91595580 | None:intergenic | 35.0% |
| !! | CGTTTTATTCGCTTTCGATT+TGG | - | chr3.1:91595306-91595325 | MS.gene69319:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | - | chr3.1:91595896-91595915 | MS.gene69319:intron | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | - | chr3.1:91595951-91595970 | MS.gene69319:intron | 35.0% |
| AGCAAAAGCAGAGAAAAGGA+AGG | - | chr3.1:91596180-91596199 | MS.gene69319:CDS | 40.0% | |
| ATGCAGCAAAAGCAGAGAAA+AGG | - | chr3.1:91596176-91596195 | MS.gene69319:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | - | chr3.1:91596340-91596359 | MS.gene69319:intron | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | - | chr3.1:91596374-91596393 | MS.gene69319:intron | 40.0% | |
| TTCCTTATGTTTCATGCAGG+AGG | - | chr3.1:91596496-91596515 | MS.gene69319:CDS | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | - | chr3.1:91595872-91595891 | MS.gene69319:intron | 40.0% | |
| ! | AATGAGGATGATGATGAGGA+TGG | - | chr3.1:91596390-91596409 | MS.gene69319:intron | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | + | chr3.1:91595365-91595384 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | + | chr3.1:91595774-91595793 | None:intergenic | 40.0% |
| ! | TGAGAATGAGGATGATGATG+AGG | - | chr3.1:91596386-91596405 | MS.gene69319:intron | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr3.1:91595558-91595577 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | + | chr3.1:91595252-91595271 | None:intergenic | 40.0% |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | + | chr3.1:91596175-91596194 | None:intergenic | 40.0% |
| AGGCTTGCCGTGAATAAGAA+GGG | - | chr3.1:91595459-91595478 | MS.gene69319:intron | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | - | chr3.1:91595221-91595240 | MS.gene69319:intron | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | + | chr3.1:91596501-91596520 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | - | chr3.1:91596499-91596518 | MS.gene69319:CDS | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | - | chr3.1:91596339-91596358 | MS.gene69319:intron | 45.0% | |
| GTGATTGAACGTTTGGTCTC+TGG | - | chr3.1:91596131-91596150 | MS.gene69319:intron | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | - | chr3.1:91595458-91595477 | MS.gene69319:intron | 45.0% | |
| TGCTGAGTTATGATGACCGT+GGG | - | chr3.1:91595803-91595822 | MS.gene69319:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | - | chr3.1:91596309-91596328 | MS.gene69319:intron | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | + | chr3.1:91595549-91595568 | None:intergenic | 45.0% |
| !! | CAGACACAGCTTTGTTGTCA+GGG | + | chr3.1:91595926-91595945 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | + | chr3.1:91595539-91595558 | None:intergenic | 45.0% |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | + | chr3.1:91595531-91595550 | None:intergenic | 45.0% |
| AAGGAAACCAGCCAAGGGAA+AGG | - | chr3.1:91595503-91595522 | MS.gene69319:intron | 50.0% | |
| AGCCAAGGGAAAGGAACCAA+AGG | - | chr3.1:91595512-91595531 | MS.gene69319:CDS | 50.0% | |
| CTGCTGAGTTATGATGACCG+TGG | - | chr3.1:91595802-91595821 | MS.gene69319:intron | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | + | chr3.1:91595234-91595253 | None:intergenic | 50.0% | |
| GCAAAGCTGCTGGAGCAAAA+TGG | - | chr3.1:91596033-91596052 | MS.gene69319:intron | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | + | chr3.1:91595240-91595259 | None:intergenic | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | + | chr3.1:91596336-91596355 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | - | chr3.1:91596401-91596420 | MS.gene69319:intron | 50.0% | |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | + | chr3.1:91595540-91595559 | None:intergenic | 50.0% |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | + | chr3.1:91595517-91595536 | None:intergenic | 50.0% |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | + | chr3.1:91595513-91595532 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | + | chr3.1:91595927-91595946 | None:intergenic | 50.0% |
| TGAAGGTCCAGCTGCTGTTG+AGG | - | chr3.1:91596326-91596345 | MS.gene69319:intron | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | + | chr3.1:91595490-91595509 | None:intergenic | 55.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | - | chr3.1:91595498-91595517 | MS.gene69319:intron | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | + | chr3.1:91595469-91595488 | None:intergenic | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | - | chr3.1:91596023-91596042 | MS.gene69319:intron | 60.0% | |
| GGGCGGAAGGAAACCAGCCA+AGG | - | chr3.1:91595497-91595516 | MS.gene69319:intron | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | - | chr3.1:91595477-91595496 | MS.gene69319:intron | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | + | chr3.1:91595487-91595506 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | + | chr3.1:91595496-91595515 | None:intergenic | 65.0% |
| CCGCCACTACCAAGGGCGGA+AGG | - | chr3.1:91595484-91595503 | MS.gene69319:intron | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | - | chr3.1:91595476-91595495 | MS.gene69319:intron | 70.0% |
| GGCGCCGCCACTACCAAGGG+CGG | - | chr3.1:91595480-91595499 | MS.gene69319:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 91595221 | 91596532 | 91595221 | ID=MS.gene69319 |
| chr3.1 | mRNA | 91595221 | 91596532 | 91595221 | ID=MS.gene69319.t1;Parent=MS.gene69319 |
| chr3.1 | exon | 91596486 | 91596532 | 91596486 | ID=MS.gene69319.t1.exon1;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91596486 | 91596532 | 91596486 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91596173 | 91596292 | 91596173 | ID=MS.gene69319.t1.exon2;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91596173 | 91596292 | 91596173 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91595806 | 91595863 | 91595806 | ID=MS.gene69319.t1.exon3;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91595806 | 91595863 | 91595806 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91595680 | 91595724 | 91595680 | ID=MS.gene69319.t1.exon4;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91595680 | 91595724 | 91595680 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91595510 | 91595590 | 91595510 | ID=MS.gene69319.t1.exon5;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91595510 | 91595590 | 91595510 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91595331 | 91595429 | 91595331 | ID=MS.gene69319.t1.exon6;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91595331 | 91595429 | 91595331 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| chr3.1 | exon | 91595221 | 91595238 | 91595221 | ID=MS.gene69319.t1.exon7;Parent=MS.gene69319.t1 |
| chr3.1 | CDS | 91595221 | 91595238 | 91595221 | ID=cds.MS.gene69319.t1;Parent=MS.gene69319.t1 |
| Gene Sequence |
| Protein sequence |
