Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69356.t1 | XP_003603845.1 | 94.9 | 428 | 22 | 0 | 1 | 428 | 1 | 428 | 8.00E-237 | 829.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69356.t1 | P50134 | 57.1 | 415 | 177 | 1 | 10 | 424 | 18 | 431 | 8.9e-136 | 485.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69356.t1 | G7J5X8 | 94.9 | 428 | 22 | 0 | 1 | 428 | 1 | 428 | 5.8e-237 | 829.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055251 | MS.gene69356 | 0.806921 | 6.50E-50 | -1.69E-46 |
| MS.gene060076 | MS.gene69356 | 0.812671 | 3.77E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene69356 | 0.813483 | 2.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69356.t1 | MTR_3g114870 | 94.860 | 428 | 22 | 0 | 1 | 428 | 1 | 428 | 0.0 | 840 |
| MS.gene69356.t1 | MTR_3g114890 | 72.749 | 422 | 84 | 4 | 1 | 422 | 38 | 428 | 0.0 | 607 |
| MS.gene69356.t1 | MTR_5g022700 | 25.148 | 338 | 229 | 9 | 84 | 407 | 121 | 448 | 3.00e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69356.t1 | AT5G11880 | 25.872 | 344 | 219 | 9 | 84 | 407 | 127 | 454 | 8.85e-15 | 76.6 |
| MS.gene69356.t1 | AT3G14390 | 25.215 | 349 | 215 | 9 | 84 | 407 | 122 | 449 | 2.70e-14 | 75.1 |
Find 96 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTAGCGTTCTTGATTTA+AGG | 0.113656 | 3.3:-93708356 | MS.gene69356:CDS |
| TGGGCTTCAAGTTGGTAATT+TGG | 0.149477 | 3.3:+93708493 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.3:-93707362 | MS.gene69356:CDS |
| GTTGTATAAGCACCCATATT+TGG | 0.221677 | 3.3:+93707349 | None:intergenic |
| AACTTCTTTGGCCAATAATA+TGG | 0.232030 | 3.3:+93707837 | None:intergenic |
| GGTGCTTATACAACTTCTTC+TGG | 0.243851 | 3.3:-93707340 | MS.gene69356:CDS |
| CGGAGGAGGAGCTCGCATTT+TGG | 0.257621 | 3.3:+93708033 | None:intergenic |
| GATGAGGATCTTGTTGTTAT+TGG | 0.264779 | 3.3:-93707682 | MS.gene69356:CDS |
| GTGCCTATAAGTGAAATATT+AGG | 0.265004 | 3.3:+93708258 | None:intergenic |
| AACCCTAATATTTCACTTAT+AGG | 0.265351 | 3.3:-93708261 | MS.gene69356:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.3:-93707784 | MS.gene69356:CDS |
| GGGCTTCAAGTTGGTAATTT+GGG | 0.276695 | 3.3:+93708494 | None:intergenic |
| TTACACTTAACGGCATAAAA+AGG | 0.284731 | 3.3:+93708282 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.3:-93707766 | MS.gene69356:CDS |
| ACGTTAGCAACAAAAGTTAT+TGG | 0.304090 | 3.3:-93707625 | MS.gene69356:CDS |
| TGGATTGATGATGGAATTTA+CGG | 0.308997 | 3.3:-93707571 | MS.gene69356:CDS |
| CGTTAGCAACAAAAGTTATT+GGG | 0.309406 | 3.3:-93707624 | MS.gene69356:CDS |
| CTTAAATCAAGAACGCTAAA+TGG | 0.327499 | 3.3:+93708357 | None:intergenic |
| ACGACTGGCGCAGTCGAAAT+TGG | 0.333325 | 3.3:+93708218 | None:intergenic |
| TTACCACGGAGCCATATTAT+TGG | 0.335936 | 3.3:-93707848 | MS.gene69356:CDS |
| GTAGCGCGGGAACTTCATTT+AGG | 0.344679 | 3.3:+93707950 | None:intergenic |
| TCGTGTCTCGGTCTCAAATA+TGG | 0.352609 | 3.3:-93707979 | MS.gene69356:CDS |
| TTGTGATCCATTTGTTCATA+AGG | 0.365764 | 3.3:+93708322 | None:intergenic |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.3:+93707382 | None:intergenic |
| TCTCTCCATGCAACATTCTC+AGG | 0.369816 | 3.3:+93707481 | None:intergenic |
| TGCTAAAACAGATTCAATTT+CGG | 0.376996 | 3.3:+93708194 | None:intergenic |
| GAATGCAGCTTCATCAAATC+TGG | 0.392102 | 3.3:+93707741 | None:intergenic |
| GGAGCTAAACCCATTGAAAT+TGG | 0.394395 | 3.3:+93707315 | None:intergenic |
| TGCCTATAAGTGAAATATTA+GGG | 0.397312 | 3.3:+93708259 | None:intergenic |
| AGATTCAATTTCGGCACGAC+TGG | 0.397432 | 3.3:+93708203 | None:intergenic |
| ATTTAGCGTTCTTGATTTAA+GGG | 0.400399 | 3.3:-93708355 | MS.gene69356:CDS |
| AATATTAGGGTTACACTTAA+CGG | 0.401795 | 3.3:+93708272 | None:intergenic |
| AATTTGGGATTGAGATTCTT+CGG | 0.411334 | 3.3:+93708509 | None:intergenic |
| TGTTCAACTCCAACTCTTGT+CGG | 0.415484 | 3.3:-93707268 | MS.gene69356:CDS |
| CTTGTTGTTATTGGTGAACC+TGG | 0.430037 | 3.3:-93707673 | MS.gene69356:CDS |
| TCTTCTGGGACCAATTTCAA+TGG | 0.431701 | 3.3:-93707325 | MS.gene69356:CDS |
| AAATGCATGCCACTTAGGTT+TGG | 0.433043 | 3.3:-93707511 | MS.gene69356:CDS |
| TGGTCGTTACTTTGCGGAAA+CGG | 0.440992 | 3.3:-93707653 | MS.gene69356:CDS |
| CGCGCTCCACTGTCTTCCTC+CGG | 0.449143 | 3.3:+93708003 | None:intergenic |
| CTTCTGGGACCAATTTCAAT+GGG | 0.452939 | 3.3:-93707324 | MS.gene69356:CDS |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.3:-93707361 | MS.gene69356:CDS |
| TGTCTTCCTCCGGTTTAATA+CGG | 0.456200 | 3.3:+93708013 | None:intergenic |
| AGTGGAGCGCGTTCGTGTCT+CGG | 0.462681 | 3.3:-93707991 | MS.gene69356:CDS |
| TGAACCTGGTCGTTACTTTG+CGG | 0.463370 | 3.3:-93707659 | MS.gene69356:CDS |
| TTTGAAACAGCTTCACAACT+TGG | 0.466293 | 3.3:-93707814 | MS.gene69356:CDS |
| TTGTCAAATGCATGCCACTT+AGG | 0.471188 | 3.3:-93707516 | MS.gene69356:CDS |
| GTGCTTATACAACTTCTTCT+GGG | 0.471995 | 3.3:-93707339 | MS.gene69356:CDS |
| CACTTGTGATTCAGTTGATA+CGG | 0.472833 | 3.3:-93707425 | MS.gene69356:CDS |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.3:-93707778 | MS.gene69356:CDS |
| CTCAAAGCTGCTGATGTGGC+TGG | 0.475343 | 3.3:-93707928 | MS.gene69356:CDS |
| GTGGCTGGACTTAAAGTAAC+CGG | 0.477454 | 3.3:-93707913 | MS.gene69356:CDS |
| TAATTGACCTTATGAACAAA+TGG | 0.478395 | 3.3:-93708329 | MS.gene69356:CDS |
| GTTCAACTCCAACTCTTGTC+GGG | 0.485449 | 3.3:-93707267 | MS.gene69356:CDS |
| GATTCTTCGGTTACTAGTGT+AGG | 0.490410 | 3.3:+93708522 | None:intergenic |
| GTTACAACTTTCGACTGTGT+TGG | 0.493514 | 3.3:-93708084 | MS.gene69356:CDS |
| TCCTAAAACTTATGCTTCAA+CGG | 0.496112 | 3.3:-93707458 | MS.gene69356:CDS |
| CGGCTCCTCCACTGCCTATG+TGG | 0.498519 | 3.3:+93707881 | None:intergenic |
| ATGTGTGACTCTGATTTACA+CGG | 0.500289 | 3.3:+93708135 | None:intergenic |
| GCTCCTCCTCCGTATTAAAC+CGG | 0.513408 | 3.3:-93708022 | MS.gene69356:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.3:-93707781 | MS.gene69356:CDS |
| GTTTCTTTCCACATAGGCAG+TGG | 0.526020 | 3.3:-93707889 | MS.gene69356:CDS |
| CTGAACTTGAGGTGAACGAT+TGG | 0.531047 | 3.3:-93707381 | MS.gene69356:CDS |
| GAGGTGAAATGAGAGAGTAT+TGG | 0.532786 | 3.3:-93707591 | MS.gene69356:CDS |
| AGTTAACGCCCGACAAGAGT+TGG | 0.541910 | 3.3:+93707259 | None:intergenic |
| AACATTTACACCAACACTTG+CGG | 0.545840 | 3.3:+93708104 | None:intergenic |
| AGAGAGTATTGGATTGATGA+TGG | 0.547610 | 3.3:-93707580 | MS.gene69356:CDS |
| TTGGCGTAAATGATTCTGTC+GGG | 0.548085 | 3.3:+93708159 | None:intergenic |
| GTTGGCGTAAATGATTCTGT+CGG | 0.557662 | 3.3:+93708158 | None:intergenic |
| CCTCCGGTTTAATACGGAGG+AGG | 0.565365 | 3.3:+93708019 | None:intergenic |
| TGACTCTGATTTACACGGGT+TGG | 0.567636 | 3.3:+93708140 | None:intergenic |
| GCTACTCAAAGCTGCTGATG+TGG | 0.574614 | 3.3:-93707932 | MS.gene69356:CDS |
| ATGGATCACAAAACTTCCTA+CGG | 0.580901 | 3.3:-93708310 | MS.gene69356:CDS |
| TCAGCAGCTTTGAGTAGCGC+GGG | 0.583058 | 3.3:+93707937 | None:intergenic |
| TCTTTCCACATAGGCAGTGG+AGG | 0.589805 | 3.3:-93707886 | MS.gene69356:CDS |
| GTATGAGTTACCTGAACTTG+AGG | 0.598744 | 3.3:-93707392 | MS.gene69356:CDS |
| GCCTATGTGGAAAGAAACGC+CGG | 0.604972 | 3.3:+93707894 | None:intergenic |
| ATCAGCAGCTTTGAGTAGCG+CGG | 0.607079 | 3.3:+93707936 | None:intergenic |
| AAGTCGAAAAGATCAAAAGA+TGG | 0.607083 | 3.3:-93708059 | MS.gene69356:CDS |
| ATAAAGTACGCCGCAAGTGT+TGG | 0.614012 | 3.3:-93708114 | MS.gene69356:CDS |
| AACACATTTCGGAAATGATG+AGG | 0.619194 | 3.3:-93707698 | MS.gene69356:CDS |
| CGTATCAACTGAATCACAAG+TGG | 0.619653 | 3.3:+93707426 | None:intergenic |
| CTTCCTCCGGTTTAATACGG+AGG | 0.619904 | 3.3:+93708016 | None:intergenic |
| GTTTCCGCAAAGTAACGACC+AGG | 0.632820 | 3.3:+93707655 | None:intergenic |
| GTTATTGGGAAACGTGTGAG+AGG | 0.635688 | 3.3:-93707610 | MS.gene69356:CDS |
| ACCGGCGTTTCTTTCCACAT+AGG | 0.637950 | 3.3:-93707895 | MS.gene69356:CDS |
| TGTGTGACTCTGATTTACAC+GGG | 0.640151 | 3.3:+93708136 | None:intergenic |
| CCTCCTCCGTATTAAACCGG+AGG | 0.647197 | 3.3:-93708019 | MS.gene69356:CDS |
| AGTGACAACTTTGTCCTCAG+AGG | 0.649939 | 3.3:-93708439 | MS.gene69356:CDS |
| CAAAACCTGAGAATGTTGCA+TGG | 0.652437 | 3.3:-93707486 | MS.gene69356:CDS |
| ATAGGCACACTAGCTTCACT+CGG | 0.663733 | 3.3:-93708243 | MS.gene69356:CDS |
| ATTAAACCGGAGGAAGACAG+TGG | 0.674532 | 3.3:-93708009 | MS.gene69356:CDS |
| GCCGACGCAAAAGCTTACCA+CGG | 0.696059 | 3.3:-93707862 | MS.gene69356:CDS |
| AATGTAAATATGCTTAGCTG+TGG | 0.700126 | 3.3:+93707294 | None:intergenic |
| ATCTGAGATAGTAACCTCTG+AGG | 0.725873 | 3.3:+93708425 | None:intergenic |
| TGGCCAATAATATGGCTCCG+TGG | 0.745513 | 3.3:+93707845 | None:intergenic |
| GTATCAACTGAATCACAAGT+GGG | 0.753190 | 3.3:+93707427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.3:93708002-93708021 | MS.gene69356:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.3:93708002-93708021 | None:intergenic | 15.0% |
| ! | AACCCTAATATTTCACTTAT+AGG | - | chr3.3:93707525-93707544 | MS.gene69356:CDS | 25.0% |
| ! | AATATTAGGGTTACACTTAA+CGG | + | chr3.3:93707517-93707536 | None:intergenic | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.3:93708005-93708024 | MS.gene69356:CDS | 25.0% |
| ! | ATTTAGCGTTCTTGATTTAA+GGG | - | chr3.3:93707431-93707450 | MS.gene69356:CDS | 25.0% |
| ! | GATGCAATAAAAACACATTT+CGG | - | chr3.3:93708077-93708096 | MS.gene69356:CDS | 25.0% |
| ! | TAATTGACCTTATGAACAAA+TGG | - | chr3.3:93707457-93707476 | MS.gene69356:CDS | 25.0% |
| ! | TGCCTATAAGTGAAATATTA+GGG | + | chr3.3:93707530-93707549 | None:intergenic | 25.0% |
| ! | TGCTAAAACAGATTCAATTT+CGG | + | chr3.3:93707595-93707614 | None:intergenic | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.3:93708008-93708027 | MS.gene69356:CDS | 30.0% | |
| AACTTCTTTGGCCAATAATA+TGG | + | chr3.3:93707952-93707971 | None:intergenic | 30.0% | |
| AAGTCGAAAAGATCAAAAGA+TGG | - | chr3.3:93707727-93707746 | MS.gene69356:CDS | 30.0% | |
| AATGTAAATATGCTTAGCTG+TGG | + | chr3.3:93708495-93708514 | None:intergenic | 30.0% | |
| ACGTTAGCAACAAAAGTTAT+TGG | - | chr3.3:93708161-93708180 | MS.gene69356:CDS | 30.0% | |
| CATTTAGCGTTCTTGATTTA+AGG | - | chr3.3:93707430-93707449 | MS.gene69356:CDS | 30.0% | |
| CGTTAGCAACAAAAGTTATT+GGG | - | chr3.3:93708162-93708181 | MS.gene69356:CDS | 30.0% | |
| CTTAAATCAAGAACGCTAAA+TGG | + | chr3.3:93707432-93707451 | None:intergenic | 30.0% | |
| GTGCCTATAAGTGAAATATT+AGG | + | chr3.3:93707531-93707550 | None:intergenic | 30.0% | |
| TCCTAAAACTTATGCTTCAA+CGG | - | chr3.3:93708328-93708347 | MS.gene69356:CDS | 30.0% | |
| TTACACTTAACGGCATAAAA+AGG | + | chr3.3:93707507-93707526 | None:intergenic | 30.0% | |
| TTGTGATCCATTTGTTCATA+AGG | + | chr3.3:93707467-93707486 | None:intergenic | 30.0% | |
| ! | AATTTGGGATTGAGATTCTT+CGG | + | chr3.3:93707280-93707299 | None:intergenic | 30.0% |
| ! | AGCTGTTTCAAAAACTTCTT+TGG | + | chr3.3:93707964-93707983 | None:intergenic | 30.0% |
| !! | TGGATTGATGATGGAATTTA+CGG | - | chr3.3:93708215-93708234 | MS.gene69356:CDS | 30.0% |
| !!! | AGCTGGTTTGGTTTTAATAA+TGG | + | chr3.3:93707397-93707416 | None:intergenic | 30.0% |
| !!! | ATTGAATCTGTTTTAGCACT+TGG | - | chr3.3:93707597-93707616 | MS.gene69356:CDS | 30.0% |
| AACACATTTCGGAAATGATG+AGG | - | chr3.3:93708088-93708107 | MS.gene69356:CDS | 35.0% | |
| AACATTTACACCAACACTTG+CGG | + | chr3.3:93707685-93707704 | None:intergenic | 35.0% | |
| ACTCCTGAAGCACAAAAAAT+GGG | + | chr3.3:93707315-93707334 | None:intergenic | 35.0% | |
| ATGGATCACAAAACTTCCTA+CGG | - | chr3.3:93707476-93707495 | MS.gene69356:CDS | 35.0% | |
| ATGTGTGACTCTGATTTACA+CGG | + | chr3.3:93707654-93707673 | None:intergenic | 35.0% | |
| GTATCAACTGAATCACAAGT+GGG | + | chr3.3:93708362-93708381 | None:intergenic | 35.0% | |
| GTGCTTATACAACTTCTTCT+GGG | - | chr3.3:93708447-93708466 | MS.gene69356:CDS | 35.0% | |
| GTTGTATAAGCACCCATATT+TGG | + | chr3.3:93708440-93708459 | None:intergenic | 35.0% | |
| ! | ACAAAAAATGGGCTTCAAGT+TGG | + | chr3.3:93707304-93707323 | None:intergenic | 35.0% |
| ! | ACCGTTGAAGCATAAGTTTT+AGG | + | chr3.3:93708332-93708351 | None:intergenic | 35.0% |
| ! | ACTTATGCTTCAACGGTTTT+TGG | - | chr3.3:93708335-93708354 | MS.gene69356:CDS | 35.0% |
| ! | CACTTGTGATTCAGTTGATA+CGG | - | chr3.3:93708361-93708380 | MS.gene69356:CDS | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.3:93708425-93708444 | MS.gene69356:CDS | 35.0% |
| ! | TTTGAAACAGCTTCACAACT+TGG | - | chr3.3:93707972-93707991 | MS.gene69356:CDS | 35.0% |
| !! | AGAGAGTATTGGATTGATGA+TGG | - | chr3.3:93708206-93708225 | MS.gene69356:CDS | 35.0% |
| !! | GATGAGGATCTTGTTGTTAT+TGG | - | chr3.3:93708104-93708123 | MS.gene69356:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.3:93708424-93708443 | MS.gene69356:CDS | 35.0% |
| CAAAACCTGAGAATGTTGCA+TGG | - | chr3.3:93708300-93708319 | MS.gene69356:CDS | 40.0% | |
| CACTCCTGAAGCACAAAAAA+TGG | + | chr3.3:93707316-93707335 | None:intergenic | 40.0% | |
| CGTATCAACTGAATCACAAG+TGG | + | chr3.3:93708363-93708382 | None:intergenic | 40.0% | |
| GAATGCAGCTTCATCAAATC+TGG | + | chr3.3:93708048-93708067 | None:intergenic | 40.0% | |
| GATTCTTCGGTTACTAGTGT+AGG | + | chr3.3:93707267-93707286 | None:intergenic | 40.0% | |
| GCATAAAAAGGCTTAACCGT+AGG | + | chr3.3:93707495-93707514 | None:intergenic | 40.0% | |
| GGAGCTAAACCCATTGAAAT+TGG | + | chr3.3:93708474-93708493 | None:intergenic | 40.0% | |
| GGTGCTTATACAACTTCTTC+TGG | - | chr3.3:93708446-93708465 | MS.gene69356:CDS | 40.0% | |
| GTATGAGTTACCTGAACTTG+AGG | - | chr3.3:93708394-93708413 | MS.gene69356:CDS | 40.0% | |
| GTTACAACTTTCGACTGTGT+TGG | - | chr3.3:93707702-93707721 | MS.gene69356:CDS | 40.0% | |
| GTTGGCGTAAATGATTCTGT+CGG | + | chr3.3:93707631-93707650 | None:intergenic | 40.0% | |
| TGTCTTCCTCCGGTTTAATA+CGG | + | chr3.3:93707776-93707795 | None:intergenic | 40.0% | |
| TGTGTGACTCTGATTTACAC+GGG | + | chr3.3:93707653-93707672 | None:intergenic | 40.0% | |
| TGTTCAACTCCAACTCTTGT+CGG | - | chr3.3:93708518-93708537 | MS.gene69356:CDS | 40.0% | |
| TTACCACGGAGCCATATTAT+TGG | - | chr3.3:93707938-93707957 | MS.gene69356:CDS | 40.0% | |
| TTGGCGTAAATGATTCTGTC+GGG | + | chr3.3:93707630-93707649 | None:intergenic | 40.0% | |
| ! | AAATGCATGCCACTTAGGTT+TGG | - | chr3.3:93708275-93708294 | MS.gene69356:CDS | 40.0% |
| ! | ATCTGAGATAGTAACCTCTG+AGG | + | chr3.3:93707364-93707383 | None:intergenic | 40.0% |
| ! | GAGGTGAAATGAGAGAGTAT+TGG | - | chr3.3:93708195-93708214 | MS.gene69356:CDS | 40.0% |
| ! | TTGTCAAATGCATGCCACTT+AGG | - | chr3.3:93708270-93708289 | MS.gene69356:CDS | 40.0% |
| ! | TTTTGTGCTTCAGGAGTGAA+AGG | - | chr3.3:93707318-93707337 | MS.gene69356:CDS | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.3:93707414-93707433 | None:intergenic | 40.0% |
| !! | CTTCTGGGACCAATTTCAAT+GGG | - | chr3.3:93708462-93708481 | MS.gene69356:CDS | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.3:93708113-93708132 | MS.gene69356:CDS | 40.0% |
| !! | GGGCTTCAAGTTGGTAATTT+GGG | + | chr3.3:93707295-93707314 | None:intergenic | 40.0% |
| !! | TCTTCTGGGACCAATTTCAA+TGG | - | chr3.3:93708461-93708480 | MS.gene69356:CDS | 40.0% |
| !! | TGAGTCATTTTCAGCTGGTT+TGG | + | chr3.3:93707409-93707428 | None:intergenic | 40.0% |
| !! | TGGGCTTCAAGTTGGTAATT+TGG | + | chr3.3:93707296-93707315 | None:intergenic | 40.0% |
| !!! | AAGCCCATTTTTTGTGCTTC+AGG | - | chr3.3:93707309-93707328 | MS.gene69356:CDS | 40.0% |
| !!! | GGTTTTGAACCAAACCTAAG+TGG | + | chr3.3:93708287-93708306 | None:intergenic | 40.0% |
| AGATTCAATTTCGGCACGAC+TGG | + | chr3.3:93707586-93707605 | None:intergenic | 45.0% | |
| AGTGACAACTTTGTCCTCAG+AGG | - | chr3.3:93707347-93707366 | MS.gene69356:CDS | 45.0% | |
| ATAAAGTACGCCGCAAGTGT+TGG | - | chr3.3:93707672-93707691 | MS.gene69356:CDS | 45.0% | |
| ATTAAACCGGAGGAAGACAG+TGG | - | chr3.3:93707777-93707796 | MS.gene69356:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.3:93708407-93708426 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.3:93708405-93708424 | MS.gene69356:CDS | 45.0% | |
| GTGGCTGGACTTAAAGTAAC+CGG | - | chr3.3:93707873-93707892 | MS.gene69356:CDS | 45.0% | |
| GTTATTGGGAAACGTGTGAG+AGG | - | chr3.3:93708176-93708195 | MS.gene69356:CDS | 45.0% | |
| GTTCAACTCCAACTCTTGTC+GGG | - | chr3.3:93708519-93708538 | MS.gene69356:CDS | 45.0% | |
| GTTTCTTTCCACATAGGCAG+TGG | - | chr3.3:93707897-93707916 | MS.gene69356:CDS | 45.0% | |
| TCGTGTCTCGGTCTCAAATA+TGG | - | chr3.3:93707807-93707826 | MS.gene69356:CDS | 45.0% | |
| TCTCTCCATGCAACATTCTC+AGG | + | chr3.3:93708308-93708327 | None:intergenic | 45.0% | |
| TGACTCTGATTTACACGGGT+TGG | + | chr3.3:93707649-93707668 | None:intergenic | 45.0% | |
| ! | ATAGGCACACTAGCTTCACT+CGG | - | chr3.3:93707543-93707562 | MS.gene69356:CDS | 45.0% |
| ! | TGAACCTGGTCGTTACTTTG+CGG | - | chr3.3:93708127-93708146 | MS.gene69356:CDS | 45.0% |
| ! | TGGTCGTTACTTTGCGGAAA+CGG | - | chr3.3:93708133-93708152 | MS.gene69356:CDS | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.3:93708020-93708039 | MS.gene69356:CDS | 45.0% |
| ACCGGCGTTTCTTTCCACAT+AGG | - | chr3.3:93707891-93707910 | MS.gene69356:CDS | 50.0% | |
| CTTCCTCCGGTTTAATACGG+AGG | + | chr3.3:93707773-93707792 | None:intergenic | 50.0% | |
| GCCTATGTGGAAAGAAACGC+CGG | + | chr3.3:93707895-93707914 | None:intergenic | 50.0% | |
| GCTACTCAAAGCTGCTGATG+TGG | - | chr3.3:93707854-93707873 | MS.gene69356:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAAC+CGG | - | chr3.3:93707764-93707783 | MS.gene69356:CDS | 50.0% | |
| GTAGCGCGGGAACTTCATTT+AGG | + | chr3.3:93707839-93707858 | None:intergenic | 50.0% | |
| GTTTCCGCAAAGTAACGACC+AGG | + | chr3.3:93708134-93708153 | None:intergenic | 50.0% | |
| TCTTTCCACATAGGCAGTGG+AGG | - | chr3.3:93707900-93707919 | MS.gene69356:CDS | 50.0% | |
| TGGCCAATAATATGGCTCCG+TGG | + | chr3.3:93707944-93707963 | None:intergenic | 50.0% | |
| ! | TCCGTGGTAAGCTTTTGCGT+CGG | + | chr3.3:93707928-93707947 | None:intergenic | 50.0% |
| !! | ATCAGCAGCTTTGAGTAGCG+CGG | + | chr3.3:93707853-93707872 | None:intergenic | 50.0% |
| ACGACTGGCGCAGTCGAAAT+TGG | + | chr3.3:93707571-93707590 | None:intergenic | 55.0% | |
| CCTCCGGTTTAATACGGAGG+AGG | + | chr3.3:93707770-93707789 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAACCGG+AGG | - | chr3.3:93707767-93707786 | MS.gene69356:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+TGG | - | chr3.3:93707858-93707877 | MS.gene69356:CDS | 55.0% | |
| GCCGACGCAAAAGCTTACCA+CGG | - | chr3.3:93707924-93707943 | MS.gene69356:CDS | 55.0% | |
| ! | GGAGGAGGAGCTCGCATTTT+GGG | + | chr3.3:93707755-93707774 | None:intergenic | 55.0% |
| !! | TCAGCAGCTTTGAGTAGCGC+GGG | + | chr3.3:93707852-93707871 | None:intergenic | 55.0% |
| AGTGGAGCGCGTTCGTGTCT+CGG | - | chr3.3:93707795-93707814 | MS.gene69356:CDS | 60.0% | |
| ! | CGGAGGAGGAGCTCGCATTT+TGG | + | chr3.3:93707756-93707775 | None:intergenic | 60.0% |
| CGCGCTCCACTGTCTTCCTC+CGG | + | chr3.3:93707786-93707805 | None:intergenic | 65.0% | |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.3:93707908-93707927 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93707261 | 93708547 | 93707261 | ID=MS.gene69356 |
| chr3.3 | mRNA | 93707261 | 93708547 | 93707261 | ID=MS.gene69356.t1;Parent=MS.gene69356 |
| chr3.3 | exon | 93707261 | 93708547 | 93707261 | ID=MS.gene69356.t1.exon1;Parent=MS.gene69356.t1 |
| chr3.3 | CDS | 93707261 | 93708547 | 93707261 | ID=cds.MS.gene69356.t1;Parent=MS.gene69356.t1 |
| Gene Sequence |
| Protein sequence |
