AlfalfaGEDB | MS.gene69443

M. sativa cultivar XinJiangDaYe / MS.gene69443

KEGG: -
GO: GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0110165
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69443.t1	XP_013462184.1	94	398	19	2	1	397	1	394	7.80E-186	659.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69443.t1	Q94AP3	68.0	400	114	5	1	397	1	389	1.9e-140	500.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69443.t1	A0A072V2F5	94.0	398	19	2	1	397	1	394	5.6e-186	659.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene69443	0.827653	1.39E-54	-1.69E-46
MS.gene056228	MS.gene69443	0.809909	1.50E-50	-1.69E-46
MS.gene056704	MS.gene69443	0.813006	3.18E-51	-1.69E-46
MS.gene056870	MS.gene69443	0.863274	2.80E-64	-1.69E-46
MS.gene05709	MS.gene69443	0.802059	6.72E-49	-1.69E-46
MS.gene05777	MS.gene69443	0.804871	1.75E-49	-1.69E-46
MS.gene058823	MS.gene69443	0.817223	3.69E-52	-1.69E-46
MS.gene060825	MS.gene69443	0.813548	2.42E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69443.t1	MTR_3g112480	97.487	398	5	2	1	397	1	394	0.0	772
MS.gene69443.t1	MTR_1g023180	81.841	402	66	5	1	397	1	400	0.0	648
MS.gene69443.t1	MTR_3g112480	96.353	329	7	2	70	397	15	339	0.0	626
MS.gene69443.t1	MTR_3g112480	97.048	271	3	2	128	397	1	267	0.0	518
MS.gene69443.t1	MTR_5g021160	56.021	382	145	4	15	394	2	362	5.77e-142	408
MS.gene69443.t1	MTR_6g081840	58.708	356	129	5	29	380	19	360	1.10e-141	408
MS.gene69443.t1	MTR_5g021160	54.181	299	114	4	98	394	2	279	7.23e-104	308
MS.gene69443.t1	MTR_5g021160	58.209	268	98	2	15	282	2	255	4.63e-102	303
MS.gene69443.t1	MTR_5g025340	40.591	372	204	5	17	380	7	369	4.21e-88	272
MS.gene69443.t1	MTR_5g025330	39.257	377	210	6	9	380	5	367	6.79e-84	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69443.t1	AT1G75500	74.250	400	89	5	1	397	1	389	0.0	587
MS.gene69443.t1	AT1G75500	74.250	400	89	5	1	397	1	389	0.0	587
MS.gene69443.t1	AT3G53210	55.643	381	151	4	15	392	4	369	2.47e-146	420
MS.gene69443.t1	AT3G18200	56.486	370	141	3	15	384	29	378	8.03e-145	416
MS.gene69443.t1	AT3G53210	60.300	267	91	2	15	281	4	255	8.00e-110	323
MS.gene69443.t1	AT3G53210	52.492	301	125	4	95	392	27	312	3.75e-104	310
MS.gene69443.t1	AT3G18200	52.985	268	106	3	117	384	1	248	1.00e-92	279
MS.gene69443.t1	AT4G30420	39.332	389	211	6	17	397	5	376	2.39e-81	254
MS.gene69443.t1	AT4G30420	39.791	382	205	6	24	397	2	366	7.47e-81	253
MS.gene69443.t1	AT5G07050	37.705	366	211	4	24	384	21	374	2.85e-79	249

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Find 111 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGGAGGAGAAGAA+AGG	0.512453	3.3:+92789200	None:intergenic
AAAGAAATTTGCAAGGGAGC+TGG	0.500926	3.3:-92785541	MS.gene69443:CDS
AAAGGATGGAATAGGAAAGG+TGG	0.662240	3.3:-92788384	MS.gene69443:CDS
AAAGGTGCGGTTGAACAGAA+AGG	0.592072	3.3:-92788402	MS.gene69443:CDS
AACCAGGGTTTCTACTTGCT+TGG	0.399423	3.3:-92788602	MS.gene69443:CDS
AACTCTTGTTGTGGCTATTA+TGG	0.204204	3.3:-92786557	MS.gene69443:CDS
AAGCAAGTAGAAACCCTGGT+TGG	0.660998	3.3:+92788604	None:intergenic
AAGCCTGAGCATCTCTTTCA+AGG	0.401704	3.3:+92788027	None:intergenic
AAGTCCAAAGAAACATGTAT+AGG	0.507011	3.3:+92788076	None:intergenic
AATACAGTAATGGCTGATTC+AGG	0.391933	3.3:-92789387	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGACTACAAAGTGCA+TGG	+	chr3.3:92787861-92787880	None:intergenic	30.0%
AAGTCCAAAGAAACATGTAT+AGG	+	chr3.3:92786736-92786755	None:intergenic	30.0%
AATAGTGCTAAAAACATGTG+AGG	+	chr3.3:92787215-92787234	None:intergenic	30.0%
ACGAAGAAAAGAAATTTGCA+AGG	-	chr3.3:92789261-92789280	MS.gene69443:CDS	30.0%
ACTTCCTATACATGTTTCTT+TGG	-	chr3.3:92786729-92786748	MS.gene69443:intron	30.0%
AGAAAGTTGAAAGTAATAGC+TGG	+	chr3.3:92785796-92785815	None:intergenic	30.0%
ATACTTTCAAAGTGACTTTG+GGG	-	chr3.3:92787028-92787047	MS.gene69443:intron	30.0%
ATATAAAGACAACTCTAACG+GGG	+	chr3.3:92787114-92787133	None:intergenic	30.0%
ATGAAAAAGATAAGGTAGCT+AGG	+	chr3.3:92788321-92788340	None:intergenic	30.0%
ATGACAAACAATGTCCTATA+AGG	+	chr3.3:92786647-92786666	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	92785431	92789400	92785431	ID=MS.gene69443
chr3.3	mRNA	92785431	92789400	92785431	ID=MS.gene69443.t1;Parent=MS.gene69443
chr3.3	exon	92789183	92789400	92789183	ID=MS.gene69443.t1.exon1;Parent=MS.gene69443.t1
chr3.3	CDS	92789183	92789400	92789183	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1
chr3.3	exon	92788986	92789048	92788986	ID=MS.gene69443.t1.exon2;Parent=MS.gene69443.t1
chr3.3	CDS	92788986	92789048	92788986	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1
chr3.3	exon	92788518	92788634	92788518	ID=MS.gene69443.t1.exon3;Parent=MS.gene69443.t1
chr3.3	CDS	92788518	92788634	92788518	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1
chr3.3	exon	92787983	92788430	92787983	ID=MS.gene69443.t1.exon4;Parent=MS.gene69443.t1
chr3.3	CDS	92787983	92788430	92787983	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1
chr3.3	exon	92786520	92786671	92786520	ID=MS.gene69443.t1.exon5;Parent=MS.gene69443.t1
chr3.3	CDS	92786520	92786671	92786520	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1
chr3.3	exon	92785431	92785626	92785431	ID=MS.gene69443.t1.exon6;Parent=MS.gene69443.t1
chr3.3	CDS	92785431	92785626	92785431	ID=cds.MS.gene69443.t1;Parent=MS.gene69443.t1

Gene Sequence

>MS.gene69443

ATGGCTGATTCAGGTGGATCTTCGGGGAGAATGTGGTGCTCCATACCAGAACGGTTTCAGCTGCATGCAGCCATGTTGGCCCTGCAGTTTGGATATGCAGGGTTCCATGTCGTCTCAAGAGCTGCACTTAACATGGGTGTTAGCAAACTTGTTTTCCCAGTTTACCGCAATATTATTGCCTTTCTTCTCCTCCTTCCTTTTGCCTACTTCTTAGAAAAGTTAGTCCTATATATTACCTCCACTAATTAACATAGTATAAATTAACATACATAAAAGTTGGTGCCGTACAATACATAACATAAGTTTACAAAATGTTAATTGCAAATTTGAATAGTTCTACTTTTTTGTTCAGGAAGGAGAGGCCAGCTATTACTTTCAACTTTCTCTTGCAGTTCTTTTGTCTTGCCCTCGTCGGGTATGCAATTTTTTTCCCCACTCATTACTTAAAGTAAAAGAAGTAAGAAAAAAACGATGGAAATCATGGTTTTAAATTACAGTTGTGGTGGTTATACTGCGAAACTATTATATTGTTAGAAAATGTGGCAGATATATAATCTAAATTTATATTGTGGTTACGTTGTGATGTCATTGCTAAGACTTTAAATCATTTATATACTGCGGATTTGCAATTTGAAACCATGATGGAAACATTAGGATTGATCCTGTTTTGTTATACTTAAAAGAATGAATTGAGAACCACGTTGTCATGAAGCTATATAATTAATATGGTACTTTAATTAATTAAAATGAAATTTGCATTACACAGGATTACAGCCAACCAGGGTTTCTACTTGCTTGGCTTGGACAACACATCTCCAACCTTTGCATCAGCTATACAGAATTCTGTACCAGCCATTACATTTCTCATGGCAGTCTTACTCAGGTAAATAAGCTAGCTATAGCCCTTAATTCATTCATTTTAATTTAAATTCAATTTGTTAATAATTAATTAGTAAAAATACAATTTCAGAATAGAAAAGGTGCGGTTGAACAGAAAGGATGGAATAGGAAAGGTGGCAGGAACATTGTTTTGTGTTGCAGGAGCATCAGTGATTACACTATACAAAGGTCCAACAATATACAGTCCAGTTCCACCTCTAAACAGCAGCATTAATGGTGGCAGTGAGTCAATCTCAATCTCAATCTCAATCTCAATCTCATCACTGGGATTGGGAGATGCAAAAGGAAAAAACTGGACCCTTGGATGTTTGTACCTTATAGGACATTGTTTGTCATGGTCTGGTTGGCTGGTGTTGCAAGCACCTGTCCTTAAGAAGTATCCGGCTCGCCTCTCTGTCACTTCCTATACATGTTTCTTTGGACTTATCCAATTTCTCATTATTGCTTTGATCCTTGAAAGAGATGCTCAGGCTTGGATTTTTCAATCTGGTGGAGAAGTTTTTACTATTTTGTACGCGGTTAGTATAAACAATTTAATATGTCATATATATGTCACGTAATTTTTATAGTAACGTTGCATTTTTCTACGATATAAAGATTTGCAGTGTTTTCTTTTTTTAGAAAATCAAACATGTGTCCGGAAATATATTATTATTTTGTATGAAAACAACACTGTTTTTATCTTCTTTCCGGAAGTATACTTTCAAAGTGACTTTGGGGAATATAGGAAGCTCCCTATATTTGGTTTTAATAAATATTATTGGACTAATTTAGCACATACCCCGTTAGAGTTGTCTTTATATATTGGCTTTTATATATTGGCCTTTAGTGGTCTAAACTTGGGGTTCATGATCTAAAAGTCTAAAAACATTGGGGTTTCACCTCACATGTTTTTAGCACTATTTTTATCCAATATGTGGACTTCGTTTTCAACAAATATTCACTAATCATTGTAACATTCCGCATATTTAGTATTAACAATGTGAAACACAGTAGATATAATATTTTTTAAGGGGAATAGATATAATATTTATTCACCAAAAAAATAGATATAATATTTTATTAAGATATAAAATTTAAATTAATATATACCAAGATTATATGAAATTTCATCATAATATGAATAAAAAACCTAATGATATGGTCAAAATGAAATTCAAGTAAAATAATTTTATTTAAGATTCACTTATTAATTAAGTGTTTGTTTTTGCATCAAGTCCTTGGTCACCGTATATTTATGAAGCTACAACTTGTAGCATCGGTCAGACGCATATTAAACACTTACAGAACGTAGTTCCAAACACCCGCTTAGCTCAAAATTAACTTCGCTCGCCTTATGCTTTTTGGTGTAGAGATCTTCTATTTATTTTTATTTTTTTACATAATGATGTTTGGAACACTTTACATAAAGATGTTTGAGAAAAGTTTACAGTTAAAGTAAAGAAAATAAGAAATACTATATATTTATAGTTATATTGATTTTATCTTAGAGGCCATACATCAGAATTTACATCTTAATAAAGCTGGCCATGCACTTTGTAGTCTTTTTTTTTGGATCAGAAGAAAAGAATGCAATTTCTTGCTAACATAATAAAAGCTATACAATAAAGAATTTCTCTAAAGTTGTATGTGCATGCTTTTGAGATATGATATGTATTATGAAAGTTGTTAAGCAATAATGTTCTAAAGATATAATGGTAGGTCATATGTGTCTAGTGTGTGCGCGTGTGTTGATAATAATGAATGAAAGAGAGTTATTAAAGTTTAATATATACTCCTATGTACTACTAATATACATTAATCTTTTTTAATATACAATGATATTGCAGGGAGTAGTGGCATCAGGAATTGCATTCGCTGTACAGATATGGTGCATTGATAGAGGAGGCCCAGTTTTCGTTGCGGTGTATCAACCTGTTCAAACTCTTGTTGTGGCTATTATGGCTTCCCTTGCTTTAGGAGAAGAGTTCTATTTGGGAGGGTTAGTCCTAGCTACCTTATCTTTTTCATTCATTTTCCCTCTTTTTGCTTTATTTTTAATCAGTTGTTGTTCACTAGTCTCCTTTAATTTCATCACATACATATATCGTTATCTACTTTTCTTCAACTCTTAATAACACGATAATGTATATTGTAGTCTTGATAACTTTCATGGTCCACGCATTTTATTTTATTATAAATAAAACTAATTAATAATATTGAGTCCAACAGATGAATGATCGCCATTTTGAAAACGACAAATGAATTTCATTAAAACAACTAGTAAGCTAGAGCTAAGGCACTATTGGGTTGGGACCTTTAGGACTTAGGCGAGAACTGACTCAACTAAGAAAAAAGGCTAGCTATTATTACAAAGCACTATTGGAAGAAGAGAAACACTTGTGTGGACCAGGACCAAGAATTTTGGTTTTGGTCACACACACAAATTTTTTCTTTCTCTCTCTTCTCTTCTCTCTTCTCCATTTTCTCTCTCTTCTCTCTTCTCTCTCTTCTCTTTTTTCTCTTTGTGTGACCAAATACAACTTGTGTGGACCAAGACCACACAAGATTTTCTCTTGGAAGAAAGAAAAATAAACGCATAACAAAAAATTAAAGATAATTAAAAAATATAAATTAATATTTAATTATGTCTTTATGTGTTAGAAGCATTAGAATTAGAAATAATTTTATTTTTTCTATAATGCAACTTTTCACATGTGAAACTAGAATGAACAATTTTCTTTTAATGATTCCATGTTCCATAGGGTCAAAAAAGTTTAAAGAATCGCTTTTTTTTTCTTCTTTTCTTTATACCTATCTTTATTACAAAAGAAAAAGAAATGGAAACCTTGTAAATAACTTTTATGAATGGATGCCACATTTGTGATGTTACAGGATCATTGGAGCAGTGTTGATCATTGTGGGGTTATACCTAGTGTTGTGGGGTAAAAACGAAGAAAAGAAATTTGCAAGGGAGCTGGCAGCAATCACTTCCACTCCGGAGCATAGTAACATAATCAGGTCCTCAAGCCATCATGCCAAAACATCACTTTCTCAACCTCTTCTCCCTTCATCAACGGAAAATGTTTGA

Protein sequence

>MS.gene69443.t1

MADSGGSSGRMWCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAFLLLLPFAYFLEKKERPAITFNFLLQFFCLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVLLRIEKVRLNRKDGIGKVAGTLFCVAGASVITLYKGPTIYSPVPPLNSSINGGSESISISISISISSLGLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLIQFLIIALILERDAQAWIFQSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIIVGLYLVLWGKNEEKKFARELAAITSTPEHSNIIRSSSHHAKTSLSQPLLPSSTENV