Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70584.t1 | XP_013461058.1 | 93 | 200 | 14 | 0 | 1 | 200 | 1 | 200 | 7.10E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70584.t1 | Q9SB04 | 64.4 | 180 | 58 | 2 | 6 | 179 | 3 | 182 | 9.5e-56 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70584.t1 | A0A072UZU9 | 93.0 | 200 | 14 | 0 | 1 | 200 | 1 | 200 | 5.1e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70584.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065402 | MS.gene70584 | PPI |
| MS.gene47429 | MS.gene70584 | PPI |
| MS.gene029745 | MS.gene70584 | PPI |
| MS.gene065401 | MS.gene70584 | PPI |
| MS.gene70584 | MS.gene051416 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70584.t1 | MTR_3g078613 | 97.500 | 200 | 5 | 0 | 1 | 200 | 1 | 200 | 2.55e-140 | 390 |
| MS.gene70584.t1 | MTR_3g078613 | 97.015 | 201 | 5 | 1 | 1 | 200 | 1 | 201 | 1.58e-138 | 385 |
| MS.gene70584.t1 | MTR_4g106590 | 68.519 | 216 | 51 | 6 | 1 | 200 | 1 | 215 | 1.78e-87 | 256 |
| MS.gene70584.t1 | MTR_1g049100 | 62.092 | 153 | 53 | 2 | 22 | 172 | 7 | 156 | 3.68e-60 | 186 |
| MS.gene70584.t1 | MTR_5g036480 | 65.493 | 142 | 45 | 1 | 17 | 154 | 10 | 151 | 3.12e-59 | 186 |
| MS.gene70584.t1 | MTR_7g490310 | 53.086 | 162 | 67 | 2 | 18 | 170 | 4 | 165 | 2.23e-54 | 173 |
| MS.gene70584.t1 | MTR_8g038620 | 55.034 | 149 | 57 | 2 | 18 | 157 | 4 | 151 | 1.51e-50 | 161 |
| MS.gene70584.t1 | MTR_3g093860 | 59.091 | 132 | 50 | 2 | 24 | 152 | 19 | 149 | 6.20e-50 | 159 |
| MS.gene70584.t1 | MTR_3g088630 | 51.678 | 149 | 53 | 2 | 22 | 152 | 21 | 168 | 7.51e-47 | 154 |
| MS.gene70584.t1 | MTR_3g015490 | 49.693 | 163 | 70 | 3 | 20 | 173 | 1 | 160 | 9.84e-46 | 149 |
| MS.gene70584.t1 | MTR_6g007460 | 38.776 | 196 | 67 | 2 | 15 | 157 | 3 | 198 | 5.13e-37 | 128 |
| MS.gene70584.t1 | MTR_4g051330 | 46.575 | 73 | 39 | 0 | 101 | 173 | 77 | 149 | 6.28e-17 | 74.7 |
| MS.gene70584.t1 | MTR_3g092780 | 29.054 | 148 | 96 | 2 | 23 | 170 | 56 | 194 | 4.53e-15 | 73.2 |
| MS.gene70584.t1 | MTR_3g092780 | 29.054 | 148 | 96 | 2 | 23 | 170 | 56 | 194 | 4.59e-15 | 73.2 |
| MS.gene70584.t1 | MTR_3g092780 | 30.769 | 130 | 81 | 2 | 23 | 152 | 56 | 176 | 3.08e-14 | 70.9 |
| MS.gene70584.t1 | MTR_3g092780 | 30.769 | 130 | 81 | 2 | 23 | 152 | 56 | 176 | 3.24e-14 | 70.9 |
| MS.gene70584.t1 | MTR_8g024260 | 28.906 | 128 | 82 | 1 | 25 | 152 | 38 | 156 | 2.78e-13 | 68.2 |
| MS.gene70584.t1 | MTR_4g061360 | 30.827 | 133 | 83 | 1 | 20 | 152 | 86 | 209 | 4.07e-13 | 67.8 |
| MS.gene70584.t1 | MTR_1g013180 | 28.662 | 157 | 97 | 4 | 23 | 179 | 160 | 301 | 5.46e-12 | 64.3 |
| MS.gene70584.t1 | MTR_1g067110 | 29.323 | 133 | 85 | 2 | 20 | 152 | 82 | 205 | 1.38e-11 | 63.2 |
| MS.gene70584.t1 | MTR_1g067110 | 29.323 | 133 | 85 | 2 | 20 | 152 | 82 | 205 | 1.40e-11 | 63.2 |
| MS.gene70584.t1 | MTR_7g118260 | 25.385 | 130 | 88 | 1 | 23 | 152 | 14 | 134 | 5.60e-11 | 61.2 |
| MS.gene70584.t1 | MTR_7g118260 | 25.385 | 130 | 88 | 1 | 23 | 152 | 14 | 134 | 6.33e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70584.t1 | AT3G48100 | 64.088 | 181 | 59 | 2 | 5 | 179 | 2 | 182 | 3.18e-77 | 229 |
| MS.gene70584.t1 | AT1G74890 | 75.839 | 149 | 30 | 2 | 22 | 166 | 17 | 163 | 1.91e-73 | 221 |
| MS.gene70584.t1 | AT5G62920 | 75.000 | 144 | 35 | 1 | 23 | 166 | 25 | 167 | 2.34e-72 | 217 |
| MS.gene70584.t1 | AT1G19050 | 67.516 | 157 | 49 | 1 | 3 | 157 | 2 | 158 | 4.18e-71 | 215 |
| MS.gene70584.t1 | AT1G59940 | 63.218 | 174 | 45 | 4 | 1 | 157 | 1 | 172 | 2.92e-68 | 208 |
| MS.gene70584.t1 | AT1G59940 | 63.218 | 174 | 45 | 4 | 1 | 157 | 93 | 264 | 8.24e-67 | 208 |
| MS.gene70584.t1 | AT1G10470 | 66.892 | 148 | 49 | 0 | 14 | 161 | 11 | 158 | 2.90e-65 | 201 |
| MS.gene70584.t1 | AT1G10470 | 73.282 | 131 | 35 | 0 | 22 | 152 | 33 | 163 | 7.02e-65 | 201 |
| MS.gene70584.t1 | AT3G57040 | 57.931 | 145 | 51 | 1 | 18 | 152 | 4 | 148 | 5.48e-55 | 175 |
| MS.gene70584.t1 | AT3G57040 | 57.931 | 145 | 51 | 1 | 18 | 152 | 4 | 148 | 5.48e-55 | 175 |
| MS.gene70584.t1 | AT2G41310 | 57.047 | 149 | 56 | 2 | 21 | 161 | 7 | 155 | 5.68e-55 | 174 |
| MS.gene70584.t1 | AT2G40670 | 59.259 | 135 | 50 | 2 | 22 | 152 | 28 | 161 | 4.27e-52 | 165 |
| MS.gene70584.t1 | AT3G56380 | 58.333 | 132 | 54 | 1 | 22 | 152 | 19 | 150 | 8.25e-52 | 164 |
| MS.gene70584.t1 | AT2G40670 | 58.824 | 136 | 50 | 3 | 22 | 152 | 28 | 162 | 2.70e-50 | 160 |
| MS.gene70584.t1 | AT3G56380 | 57.895 | 133 | 54 | 2 | 22 | 152 | 19 | 151 | 4.91e-50 | 159 |
| MS.gene70584.t1 | AT1G10470 | 66.129 | 62 | 21 | 0 | 100 | 161 | 35 | 96 | 5.53e-21 | 86.3 |
| MS.gene70584.t1 | AT2G07440 | 57.377 | 61 | 26 | 0 | 101 | 161 | 9 | 69 | 1.14e-15 | 70.9 |
| MS.gene70584.t1 | AT5G07210 | 29.545 | 176 | 99 | 6 | 1 | 174 | 1 | 153 | 8.05e-14 | 69.7 |
| MS.gene70584.t1 | AT5G24470 | 30.000 | 130 | 82 | 2 | 23 | 152 | 50 | 170 | 9.30e-14 | 69.3 |
| MS.gene70584.t1 | AT2G46790 | 27.692 | 130 | 85 | 1 | 23 | 152 | 37 | 157 | 6.72e-13 | 67.0 |
| MS.gene70584.t1 | AT2G46790 | 27.692 | 130 | 85 | 1 | 23 | 152 | 37 | 157 | 8.41e-13 | 66.6 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 3.01e-12 | 64.7 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 3.01e-12 | 64.7 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 3.01e-12 | 64.7 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 3.13e-12 | 65.1 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 4.71e-12 | 64.3 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 4.71e-12 | 64.3 |
| MS.gene70584.t1 | AT5G60100 | 31.579 | 133 | 82 | 2 | 20 | 152 | 61 | 184 | 4.71e-12 | 64.3 |
| MS.gene70584.t1 | AT1G67710 | 29.655 | 145 | 90 | 3 | 14 | 158 | 2 | 134 | 2.12e-11 | 62.4 |
| MS.gene70584.t1 | AT5G07210 | 28.261 | 184 | 99 | 7 | 1 | 174 | 1 | 161 | 2.60e-11 | 62.4 |
Find 41 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTACCTATCAATT+CGG | 0.347926 | 3.1:-64410570 | None:intergenic |
| TGAATTGCTCAAGAAGATTA+AGG | 0.356380 | 3.1:+64410321 | MS.gene70584:CDS |
| ACTAGAGCTTTACAGTATCT+TGG | 0.363036 | 3.1:+64410088 | MS.gene70584:CDS |
| AGCTTTACAGTATCTTGGTT+TGG | 0.366392 | 3.1:+64410093 | MS.gene70584:CDS |
| CTACTGCTGGTGATGTTCTC+AGG | 0.387823 | 3.1:+64409818 | MS.gene70584:CDS |
| TGTTCTCAGGCAGAGTTTAC+CGG | 0.414947 | 3.1:+64409831 | MS.gene70584:CDS |
| TTCACATCTGCCAACTTGAC+AGG | 0.430476 | 3.1:-64411732 | None:intergenic |
| ATGAATCAATGGTTATAGTC+TGG | 0.434730 | 3.1:-64411916 | None:intergenic |
| ACATCTTGACCCGAATTGAT+AGG | 0.448548 | 3.1:+64410560 | MS.gene70584:CDS |
| ATGACAGATTATTCTATGCC+TGG | 0.452458 | 3.1:+64410286 | MS.gene70584:CDS |
| TATTCTATGCCTGGGATGAC+AGG | 0.453139 | 3.1:+64410295 | MS.gene70584:CDS |
| CTTAAATTCACTTCTTGCAA+AGG | 0.463478 | 3.1:+64409937 | MS.gene70584:CDS |
| ATTGACAGTTGCTTGGAAGA+AGG | 0.475916 | 3.1:+64411687 | MS.gene70584:intron |
| ACACCAGCACCACTTACTTC+CGG | 0.479536 | 3.1:-64409850 | None:intergenic |
| TTACAGTATCTTGGTTTGGA+TGG | 0.481557 | 3.1:+64410097 | MS.gene70584:CDS |
| GATGGTGACACGAGTTCCAT+TGG | 0.497003 | 3.1:+64410115 | MS.gene70584:CDS |
| AAGATCTTACCTATCAATTC+GGG | 0.507592 | 3.1:-64410569 | None:intergenic |
| TTTGTTCATTGACAGTTGCT+TGG | 0.513588 | 3.1:+64411680 | MS.gene70584:intron |
| AGAGGTGAAGGAAAGAAAGT+CGG | 0.518178 | 3.1:+64411777 | MS.gene70584:CDS |
| TTTGCTTACATCAAAACCAA+TGG | 0.528283 | 3.1:-64410131 | None:intergenic |
| TTACCGGAAGTAAGTGGTGC+TGG | 0.532656 | 3.1:+64409847 | MS.gene70584:CDS |
| GAAGTAAGTGGTGCTGGTGT+TGG | 0.533059 | 3.1:+64409853 | MS.gene70584:CDS |
| TTGATCGCAAAGTCATTGAA+AGG | 0.535022 | 3.1:+64409911 | MS.gene70584:CDS |
| GCAGTTACTGTTGTTGAGAG+TGG | 0.535906 | 3.1:+64410064 | MS.gene70584:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536075 | 3.1:-64410304 | None:intergenic |
| TTGTATTTCATCTCTATCAA+CGG | 0.543618 | 3.1:+64411836 | MS.gene70584:CDS |
| TGACAGATTATTCTATGCCT+GGG | 0.547632 | 3.1:+64410287 | MS.gene70584:CDS |
| TCAGAGGACATAACCACCAC+TGG | 0.556667 | 3.1:-64410535 | None:intergenic |
| TCTATTGAAACCTGTCAAGT+TGG | 0.561378 | 3.1:+64411722 | MS.gene70584:CDS |
| TTCTTTGACGACATTGCAGA+CGG | 0.571495 | 3.1:-64411891 | None:intergenic |
| GGTGAAGGAAAGAAAGTCGG+AGG | 0.571633 | 3.1:+64411780 | MS.gene70584:CDS |
| AGAGTTGCACGTTCTTGCAG+TGG | 0.580799 | 3.1:+64409876 | MS.gene70584:CDS |
| ATTTAGAGAAATTCCAGTGG+TGG | 0.593101 | 3.1:+64410522 | MS.gene70584:CDS |
| GATTTCATAATGAGAGGTGA+AGG | 0.593144 | 3.1:+64411765 | MS.gene70584:CDS |
| TTAACAGATTTCATAATGAG+AGG | 0.593540 | 3.1:+64411759 | MS.gene70584:CDS |
| GACATTGCAGACGGTGACAA+TGG | 0.595350 | 3.1:-64411882 | None:intergenic |
| CAGAGTTTACCGGAAGTAAG+TGG | 0.596307 | 3.1:+64409841 | MS.gene70584:CDS |
| TTGCTTGGAAGAAGGAGCAG+AGG | 0.596704 | 3.1:+64411695 | MS.gene70584:CDS |
| AATATGGTTACAGGGTGTGA+AGG | 0.609461 | 3.1:+64410252 | MS.gene70584:intron |
| TGTATTTAGAGAAATTCCAG+TGG | 0.707997 | 3.1:+64410519 | MS.gene70584:CDS |
| TCGGGTCAAGATGTTCTCAG+AGG | 0.723155 | 3.1:-64410551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTTTTTG+AGG | + | chr3.1:64410185-64410204 | MS.gene70584:intron | 10.0% |
| !! | AAAATAAAAAAGAATTGCAT+AGG | - | chr3.1:64410717-64410736 | None:intergenic | 15.0% |
| !! | AACACATAAAAAAATTCAAA+AGG | - | chr3.1:64409988-64410007 | None:intergenic | 15.0% |
| !! | ACACATAAAAAAATTCAAAA+GGG | - | chr3.1:64409987-64410006 | None:intergenic | 15.0% |
| !!! | ATTAAAGACATGTATATTTT+TGG | + | chr3.1:64410755-64410774 | MS.gene70584:intron | 15.0% |
| !!! | TGAATTTTTTTATGTGTTTT+TGG | + | chr3.1:64409990-64410009 | MS.gene70584:intron | 15.0% |
| !! | AAACAATACTAATTCAAAAG+AGG | - | chr3.1:64410609-64410628 | None:intergenic | 20.0% |
| !! | AAAGATCTCAATATCTAATT+AGG | + | chr3.1:64410993-64411012 | MS.gene70584:intron | 20.0% |
| !! | AAATATCTCAAAAAAGAAGT+CGG | + | chr3.1:64411805-64411824 | MS.gene70584:CDS | 20.0% |
| !! | ATAATTTCAGGAATAAAAGT+AGG | - | chr3.1:64411498-64411517 | None:intergenic | 20.0% |
| !! | ATGATCAATAAATATGAAAC+AGG | - | chr3.1:64411655-64411674 | None:intergenic | 20.0% |
| !! | GTCTTTAATACAAAAACTAA+AGG | - | chr3.1:64410744-64410763 | None:intergenic | 20.0% |
| !! | TAATCTAATCTAATCTAATC+AGG | - | chr3.1:64410419-64410438 | None:intergenic | 20.0% |
| !!! | GATTAGTTATAGTTACATAT+TGG | + | chr3.1:64410673-64410692 | MS.gene70584:intron | 20.0% |
| !!! | GTATTTTCAGTTTTTTTGTT+TGG | + | chr3.1:64410207-64410226 | MS.gene70584:intron | 20.0% |
| ! | AATCCTTTCACTAAAATGAT+AGG | + | chr3.1:64411221-64411240 | MS.gene70584:intron | 25.0% |
| ! | AATCTCAGCTAAAAAACAAT+AGG | - | chr3.1:64410640-64410659 | None:intergenic | 25.0% |
| ! | ATCCATTTGTGAAATATGTA+TGG | + | chr3.1:64410802-64410821 | MS.gene70584:intron | 25.0% |
| ! | CTCAATATCTAATTAGGTTT+AGG | + | chr3.1:64410999-64411018 | MS.gene70584:intron | 25.0% |
| ! | GTGAAATATGTATGGAATAT+GGG | + | chr3.1:64410810-64410829 | MS.gene70584:intron | 25.0% |
| ! | TAACATGGTGATATTATTGA+GGG | - | chr3.1:64411292-64411311 | None:intergenic | 25.0% |
| ! | TAGAATAAGAAAAAACGTGT+GGG | - | chr3.1:64410845-64410864 | None:intergenic | 25.0% |
| ! | TATAATTGCCACACAATTAT+AGG | + | chr3.1:64411449-64411468 | MS.gene70584:intron | 25.0% |
| ! | TGATAAAACCTATAATTGTG+TGG | - | chr3.1:64411460-64411479 | None:intergenic | 25.0% |
| ! | TGTGAAATATGTATGGAATA+TGG | + | chr3.1:64410809-64410828 | MS.gene70584:intron | 25.0% |
| ! | TTAACAGATTTCATAATGAG+AGG | + | chr3.1:64411759-64411778 | MS.gene70584:CDS | 25.0% |
| ! | TTCCATACATATTTCACAAA+TGG | - | chr3.1:64410807-64410826 | None:intergenic | 25.0% |
| ! | TTGCAAAATCTTTCTACTAA+TGG | + | chr3.1:64411255-64411274 | MS.gene70584:intron | 25.0% |
| ! | TTGTATTTCATCTCTATCAA+CGG | + | chr3.1:64411836-64411855 | MS.gene70584:CDS | 25.0% |
| !! | GATTGGATTCTAATGTTTTT+CGG | + | chr3.1:64410021-64410040 | MS.gene70584:intron | 25.0% |
| !! | GTAAGCAAAGTTTCTAATTT+TGG | + | chr3.1:64410145-64410164 | MS.gene70584:intron | 25.0% |
| !! | TTTTGATGAATATGGTTACA+GGG | + | chr3.1:64410244-64410263 | MS.gene70584:intron | 25.0% |
| !!! | TAACCTATCATTTTAGTGAA+AGG | - | chr3.1:64411227-64411246 | None:intergenic | 25.0% |
| !!! | TCATTTTAGTGAAAGGATTT+TGG | - | chr3.1:64411220-64411239 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTTGATGAATA+TGG | + | chr3.1:64410236-64410255 | MS.gene70584:intron | 25.0% |
| !!! | TTATGTGTTTTTGGTTCATT+TGG | + | chr3.1:64409999-64410018 | MS.gene70584:intron | 25.0% |
| !!! | TTATTTCTGTTAATTTCAGC+AGG | + | chr3.1:64410489-64410508 | MS.gene70584:intron | 25.0% |
| AAGATCTTACCTATCAATTC+GGG | - | chr3.1:64410572-64410591 | None:intergenic | 30.0% | |
| AAGTAAGAAACTTCCATTCA+TGG | - | chr3.1:64411627-64411646 | None:intergenic | 30.0% | |
| ACAAAAATACAACATAGCCT+TGG | - | chr3.1:64411141-64411160 | None:intergenic | 30.0% | |
| ATATCTAATTAGGTTTAGGC+TGG | + | chr3.1:64411003-64411022 | MS.gene70584:intron | 30.0% | |
| ATATTACCAATTTACCACCA+AGG | + | chr3.1:64411121-64411140 | MS.gene70584:intron | 30.0% | |
| CAAGATCTTACCTATCAATT+CGG | - | chr3.1:64410573-64410592 | None:intergenic | 30.0% | |
| CATATTGCCAATCATTAAGA+AGG | - | chr3.1:64411067-64411086 | None:intergenic | 30.0% | |
| CATTAAGCCTTCTTAATGAT+TGG | + | chr3.1:64411057-64411076 | MS.gene70584:intron | 30.0% | |
| CTAACATGGTGATATTATTG+AGG | - | chr3.1:64411293-64411312 | None:intergenic | 30.0% | |
| CTAGAATAAGAAAAAACGTG+TGG | - | chr3.1:64410846-64410865 | None:intergenic | 30.0% | |
| CTTAAATTCACTTCTTGCAA+AGG | + | chr3.1:64409937-64409956 | MS.gene70584:CDS | 30.0% | |
| GAAGGTTCAACATAACAAAA+TGG | - | chr3.1:64411530-64411549 | None:intergenic | 30.0% | |
| GAGAAAAGGGATTTATTGTT+TGG | - | chr3.1:64411185-64411204 | None:intergenic | 30.0% | |
| TGAATTGCTCAAGAAGATTA+AGG | + | chr3.1:64410321-64410340 | MS.gene70584:CDS | 30.0% | |
| TGGTGTTTGTCAATAATTTC+AGG | - | chr3.1:64411510-64411529 | None:intergenic | 30.0% | |
| TGTATTTAGAGAAATTCCAG+TGG | + | chr3.1:64410519-64410538 | MS.gene70584:CDS | 30.0% | |
| TTTGCTTACATCAAAACCAA+TGG | - | chr3.1:64410134-64410153 | None:intergenic | 30.0% | |
| ! | AAATGGATTTCATGTCTAGA+TGG | - | chr3.1:64410790-64410809 | None:intergenic | 30.0% |
| ! | AATGGATTTCATGTCTAGAT+GGG | - | chr3.1:64410789-64410808 | None:intergenic | 30.0% |
| ! | ATGAAATCCATTTTCCTACA+AGG | + | chr3.1:64411393-64411412 | MS.gene70584:intron | 30.0% |
| ! | CAAATTTGATGATCCATGAA+TGG | + | chr3.1:64411611-64411630 | MS.gene70584:intron | 30.0% |
| ! | GATGTATGTATTGATGAAAG+AGG | + | chr3.1:64410387-64410406 | MS.gene70584:intron | 30.0% |
| !! | GTTTTGATGAATATGGTTAC+AGG | + | chr3.1:64410243-64410262 | MS.gene70584:intron | 30.0% |
| !!! | CACACGTTTTTTCTTATTCT+AGG | + | chr3.1:64410844-64410863 | MS.gene70584:intron | 30.0% |
| !!! | CGTTTTTTCTTATTCTAGGT+TGG | + | chr3.1:64410848-64410867 | MS.gene70584:intron | 30.0% |
| !!! | TGTTTTTGGTTCATTTGGAT+TGG | + | chr3.1:64410004-64410023 | MS.gene70584:intron | 30.0% |
| AAATCCAAAAATAGCCATGG+TGG | + | chr3.1:64410918-64410937 | MS.gene70584:intron | 35.0% | |
| AATCCAAAAATAGCCATGGT+GGG | + | chr3.1:64410919-64410938 | MS.gene70584:intron | 35.0% | |
| ACCAAATCCAAAAATAGCCA+TGG | + | chr3.1:64410915-64410934 | MS.gene70584:intron | 35.0% | |
| ACTAGAGCTTTACAGTATCT+TGG | + | chr3.1:64410088-64410107 | MS.gene70584:CDS | 35.0% | |
| AGCTTTACAGTATCTTGGTT+TGG | + | chr3.1:64410093-64410112 | MS.gene70584:CDS | 35.0% | |
| ATGACAGATTATTCTATGCC+TGG | + | chr3.1:64410286-64410305 | MS.gene70584:CDS | 35.0% | |
| ATTTAGAGAAATTCCAGTGG+TGG | + | chr3.1:64410522-64410541 | MS.gene70584:CDS | 35.0% | |
| CATGGATCATCAAATTTGCA+AGG | - | chr3.1:64411609-64411628 | None:intergenic | 35.0% | |
| GATTTCATAATGAGAGGTGA+AGG | + | chr3.1:64411765-64411784 | MS.gene70584:CDS | 35.0% | |
| TCTATTGAAACCTGTCAAGT+TGG | + | chr3.1:64411722-64411741 | MS.gene70584:CDS | 35.0% | |
| TGACAGATTATTCTATGCCT+GGG | + | chr3.1:64410287-64410306 | MS.gene70584:CDS | 35.0% | |
| TTGATCGCAAAGTCATTGAA+AGG | + | chr3.1:64409911-64409930 | MS.gene70584:CDS | 35.0% | |
| TTTGTTCATTGACAGTTGCT+TGG | + | chr3.1:64411680-64411699 | MS.gene70584:intron | 35.0% | |
| ! | AAAATACAACATAGCCTTGG+TGG | - | chr3.1:64411138-64411157 | None:intergenic | 35.0% |
| !! | TTACAGTATCTTGGTTTGGA+TGG | + | chr3.1:64410097-64410116 | MS.gene70584:CDS | 35.0% |
| !!! | ACCATGGCTATTTTTGGATT+TGG | - | chr3.1:64410919-64410938 | None:intergenic | 35.0% |
| !!! | ATGGCTATTTTTGGATTTGG+TGG | - | chr3.1:64410916-64410935 | None:intergenic | 35.0% |
| AATAATGTTGTCATGCCAGC+AGG | - | chr3.1:64411421-64411440 | None:intergenic | 40.0% | |
| AATATGGTTACAGGGTGTGA+AGG | + | chr3.1:64410252-64410271 | MS.gene70584:intron | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | - | chr3.1:64410307-64410326 | None:intergenic | 40.0% | |
| ACATCTTGACCCGAATTGAT+AGG | + | chr3.1:64410560-64410579 | MS.gene70584:CDS | 40.0% | |
| AGAGGTGAAGGAAAGAAAGT+CGG | + | chr3.1:64411777-64411796 | MS.gene70584:CDS | 40.0% | |
| ATAATGTTGTCATGCCAGCA+GGG | - | chr3.1:64411420-64411439 | None:intergenic | 40.0% | |
| ATGATTATGATCACCCACCA+TGG | - | chr3.1:64410935-64410954 | None:intergenic | 40.0% | |
| ATTCCCTTATAAGGCTGAGA+AGG | - | chr3.1:64411548-64411567 | None:intergenic | 40.0% | |
| ATTGACAGTTGCTTGGAAGA+AGG | + | chr3.1:64411687-64411706 | MS.gene70584:intron | 40.0% | |
| CCATGTGTCTAACTCTAACA+TGG | - | chr3.1:64411307-64411326 | None:intergenic | 40.0% | |
| CCATGTTAGAGTTAGACACA+TGG | + | chr3.1:64411304-64411323 | MS.gene70584:intron | 40.0% | |
| CTCATGCACATTCCCTTATA+AGG | - | chr3.1:64411557-64411576 | None:intergenic | 40.0% | |
| TTCTTTGACGACATTGCAGA+CGG | - | chr3.1:64411894-64411913 | None:intergenic | 40.0% | |
| ! | ACATAGCCTTGGTGGTAAAT+TGG | - | chr3.1:64411130-64411149 | None:intergenic | 40.0% |
| ! | GAACCTTCTCAGCCTTATAA+GGG | + | chr3.1:64411542-64411561 | MS.gene70584:intron | 40.0% |
| ! | TGAACCTTCTCAGCCTTATA+AGG | + | chr3.1:64411541-64411560 | MS.gene70584:intron | 40.0% |
| !! | AAAGGATTTTGGCCATGTGT+TGG | - | chr3.1:64411209-64411228 | None:intergenic | 40.0% |
| AGAGTTAGACACATGGAGTG+TGG | + | chr3.1:64411311-64411330 | MS.gene70584:intron | 45.0% | |
| CAGAGTTTACCGGAAGTAAG+TGG | + | chr3.1:64409841-64409860 | MS.gene70584:CDS | 45.0% | |
| GCAGTTACTGTTGTTGAGAG+TGG | + | chr3.1:64410064-64410083 | MS.gene70584:intron | 45.0% | |
| TATTCTATGCCTGGGATGAC+AGG | + | chr3.1:64410295-64410314 | MS.gene70584:CDS | 45.0% | |
| TGTTCTCAGGCAGAGTTTAC+CGG | + | chr3.1:64409831-64409850 | MS.gene70584:CDS | 45.0% | |
| TTCACATCTGCCAACTTGAC+AGG | - | chr3.1:64411735-64411754 | None:intergenic | 45.0% | |
| ! | GCCATGTGTTGGTGAGAAAA+GGG | - | chr3.1:64411198-64411217 | None:intergenic | 45.0% |
| ! | TCCCTTTTCTCACCAACACA+TGG | + | chr3.1:64411194-64411213 | MS.gene70584:intron | 45.0% |
| !! | TCACCCACCATGGCTATTTT+TGG | - | chr3.1:64410925-64410944 | None:intergenic | 45.0% |
| ACACCAGCACCACTTACTTC+CGG | - | chr3.1:64409853-64409872 | None:intergenic | 50.0% | |
| AGAGTTGCACGTTCTTGCAG+TGG | + | chr3.1:64409876-64409895 | MS.gene70584:CDS | 50.0% | |
| GACATTGCAGACGGTGACAA+TGG | - | chr3.1:64411885-64411904 | None:intergenic | 50.0% | |
| GATGGTGACACGAGTTCCAT+TGG | + | chr3.1:64410115-64410134 | MS.gene70584:CDS | 50.0% | |
| GCAGGGTCCTTGTAGGAAAA+TGG | - | chr3.1:64411403-64411422 | None:intergenic | 50.0% | |
| GGTGAAGGAAAGAAAGTCGG+AGG | + | chr3.1:64411780-64411799 | MS.gene70584:CDS | 50.0% | |
| TCAGAGGACATAACCACCAC+TGG | - | chr3.1:64410538-64410557 | None:intergenic | 50.0% | |
| TCGGGTCAAGATGTTCTCAG+AGG | - | chr3.1:64410554-64410573 | None:intergenic | 50.0% | |
| TTACCGGAAGTAAGTGGTGC+TGG | + | chr3.1:64409847-64409866 | MS.gene70584:CDS | 50.0% | |
| TTGCTTGGAAGAAGGAGCAG+AGG | + | chr3.1:64411695-64411714 | MS.gene70584:CDS | 50.0% | |
| ! | CTACTGCTGGTGATGTTCTC+AGG | + | chr3.1:64409818-64409837 | MS.gene70584:CDS | 50.0% |
| ! | GGCCATGTGTTGGTGAGAAA+AGG | - | chr3.1:64411199-64411218 | None:intergenic | 50.0% |
| ! | GTTTAGGCTGGCACTGAATG+TGG | + | chr3.1:64411015-64411034 | MS.gene70584:intron | 50.0% |
| ! | TTTTCCTACAAGGACCCTGC+TGG | + | chr3.1:64411403-64411422 | MS.gene70584:intron | 50.0% |
| !! | GAAGTAAGTGGTGCTGGTGT+TGG | + | chr3.1:64409853-64409872 | MS.gene70584:CDS | 50.0% |
| CATGCCAGCAGGGTCCTTGT+AGG | - | chr3.1:64411410-64411429 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64409814 | 64411926 | 64409814 | ID=MS.gene70584 |
| chr3.1 | mRNA | 64409814 | 64411926 | 64409814 | ID=MS.gene70584.t1;Parent=MS.gene70584 |
| chr3.1 | exon | 64409814 | 64409958 | 64409814 | ID=MS.gene70584.t1.exon1;Parent=MS.gene70584.t1 |
| chr3.1 | CDS | 64409814 | 64409958 | 64409814 | ID=cds.MS.gene70584.t1;Parent=MS.gene70584.t1 |
| chr3.1 | exon | 64410068 | 64410144 | 64410068 | ID=MS.gene70584.t1.exon2;Parent=MS.gene70584.t1 |
| chr3.1 | CDS | 64410068 | 64410144 | 64410068 | ID=cds.MS.gene70584.t1;Parent=MS.gene70584.t1 |
| chr3.1 | exon | 64410265 | 64410342 | 64410265 | ID=MS.gene70584.t1.exon3;Parent=MS.gene70584.t1 |
| chr3.1 | CDS | 64410265 | 64410342 | 64410265 | ID=cds.MS.gene70584.t1;Parent=MS.gene70584.t1 |
| chr3.1 | exon | 64410511 | 64410581 | 64410511 | ID=MS.gene70584.t1.exon4;Parent=MS.gene70584.t1 |
| chr3.1 | CDS | 64410511 | 64410581 | 64410511 | ID=cds.MS.gene70584.t1;Parent=MS.gene70584.t1 |
| chr3.1 | exon | 64411695 | 64411926 | 64411695 | ID=MS.gene70584.t1.exon5;Parent=MS.gene70584.t1 |
| chr3.1 | CDS | 64411695 | 64411926 | 64411695 | ID=cds.MS.gene70584.t1;Parent=MS.gene70584.t1 |
| Gene Sequence |
| Protein sequence |
