Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70595.t1 | XP_013461036.1 | 97.6 | 415 | 8 | 2 | 1 | 414 | 1 | 414 | 9.80E-232 | 812.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70595.t1 | O48716 | 40.4 | 270 | 145 | 4 | 140 | 409 | 165 | 418 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70595.t1 | A0A072VA53 | 97.6 | 415 | 8 | 2 | 1 | 414 | 1 | 414 | 7.1e-232 | 812.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055942 | MS.gene70595 | 0.800276 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70595 | MS.gene070758 | PPI |
| MS.gene70595 | MS.gene006731 | PPI |
| MS.gene70595 | MS.gene070761 | PPI |
| MS.gene70595 | MS.gene070760 | PPI |
| MS.gene70595 | MS.gene045436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70595.t1 | MTR_3g078380 | 97.590 | 415 | 8 | 2 | 1 | 414 | 1 | 414 | 0.0 | 823 |
| MS.gene70595.t1 | MTR_4g106480 | 61.502 | 426 | 127 | 10 | 1 | 414 | 1 | 401 | 1.70e-166 | 473 |
| MS.gene70595.t1 | MTR_5g035980 | 51.456 | 412 | 155 | 13 | 37 | 414 | 48 | 448 | 9.55e-126 | 371 |
| MS.gene70595.t1 | MTR_8g089650 | 45.128 | 390 | 186 | 12 | 30 | 411 | 61 | 430 | 4.85e-101 | 308 |
| MS.gene70595.t1 | MTR_4g104410 | 40.452 | 398 | 186 | 13 | 17 | 410 | 14 | 364 | 1.01e-81 | 255 |
| MS.gene70595.t1 | MTR_1g021590 | 37.561 | 410 | 218 | 12 | 3 | 409 | 57 | 431 | 8.46e-77 | 246 |
| MS.gene70595.t1 | MTR_5g018520 | 39.655 | 348 | 173 | 11 | 69 | 409 | 102 | 419 | 2.04e-75 | 242 |
| MS.gene70595.t1 | MTR_4g068457 | 38.776 | 343 | 189 | 9 | 69 | 409 | 133 | 456 | 2.82e-71 | 232 |
| MS.gene70595.t1 | MTR_2g060070 | 37.337 | 383 | 203 | 14 | 33 | 412 | 34 | 382 | 2.10e-67 | 220 |
| MS.gene70595.t1 | MTR_2g101410 | 32.828 | 396 | 221 | 13 | 29 | 409 | 42 | 407 | 1.04e-48 | 171 |
| MS.gene70595.t1 | MTR_3g110185 | 34.153 | 366 | 201 | 13 | 53 | 411 | 79 | 411 | 1.24e-48 | 177 |
| MS.gene70595.t1 | MTR_7g086360 | 24.771 | 327 | 182 | 12 | 55 | 372 | 48 | 319 | 2.96e-12 | 67.8 |
| MS.gene70595.t1 | MTR_4g105700 | 26.449 | 276 | 171 | 13 | 114 | 372 | 327 | 587 | 8.16e-12 | 67.8 |
| MS.gene70595.t1 | MTR_1g090827 | 26.214 | 206 | 115 | 4 | 176 | 357 | 88 | 280 | 2.00e-11 | 66.6 |
| MS.gene70595.t1 | MTR_4g071130 | 27.861 | 201 | 118 | 6 | 176 | 357 | 88 | 280 | 2.62e-11 | 66.2 |
| MS.gene70595.t1 | MTR_3g088545 | 28.829 | 222 | 121 | 10 | 193 | 408 | 97 | 287 | 3.02e-11 | 65.1 |
| MS.gene70595.t1 | MTR_4g123597 | 25.506 | 247 | 140 | 7 | 109 | 352 | 488 | 693 | 3.07e-11 | 65.9 |
| MS.gene70595.t1 | MTR_4g119620 | 23.143 | 350 | 182 | 13 | 99 | 407 | 18 | 321 | 4.11e-11 | 64.3 |
| MS.gene70595.t1 | MTR_4g119620 | 29.500 | 200 | 113 | 9 | 211 | 407 | 15 | 189 | 6.90e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70595.t1 | AT5G50120 | 56.720 | 372 | 135 | 8 | 55 | 413 | 30 | 388 | 1.12e-139 | 404 |
| MS.gene70595.t1 | AT1G24130 | 54.359 | 390 | 147 | 12 | 37 | 414 | 45 | 415 | 8.32e-123 | 362 |
| MS.gene70595.t1 | AT1G24530 | 45.407 | 381 | 181 | 11 | 32 | 411 | 51 | 405 | 4.34e-97 | 296 |
| MS.gene70595.t1 | AT2G26490 | 41.228 | 342 | 176 | 7 | 69 | 409 | 101 | 418 | 9.46e-78 | 248 |
| MS.gene70595.t1 | AT3G18950 | 39.612 | 361 | 187 | 10 | 54 | 409 | 130 | 464 | 8.12e-74 | 238 |
| MS.gene70595.t1 | AT3G50390 | 38.040 | 347 | 184 | 11 | 69 | 409 | 103 | 424 | 6.82e-71 | 231 |
| MS.gene70595.t1 | AT1G49450 | 38.286 | 350 | 185 | 9 | 69 | 409 | 139 | 466 | 1.17e-70 | 230 |
| MS.gene70595.t1 | AT3G51930 | 38.421 | 380 | 194 | 14 | 45 | 412 | 44 | 395 | 6.32e-68 | 221 |
| MS.gene70595.t1 | AT4G34380 | 36.591 | 399 | 211 | 12 | 24 | 409 | 87 | 456 | 1.47e-66 | 220 |
| MS.gene70595.t1 | AT1G47610 | 37.500 | 344 | 188 | 9 | 69 | 409 | 29 | 348 | 4.01e-66 | 215 |
| MS.gene70595.t1 | AT1G21651 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 4.29e-12 | 68.6 |
| MS.gene70595.t1 | AT1G21650 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 4.72e-12 | 68.6 |
| MS.gene70595.t1 | AT2G43770 | 24.405 | 336 | 187 | 13 | 49 | 372 | 37 | 317 | 1.27e-11 | 65.9 |
| MS.gene70595.t1 | AT3G49660 | 22.932 | 266 | 144 | 8 | 180 | 407 | 70 | 312 | 2.00e-11 | 65.1 |
| MS.gene70595.t1 | AT1G48630 | 28.270 | 237 | 122 | 9 | 77 | 307 | 31 | 225 | 2.51e-11 | 65.1 |
| MS.gene70595.t1 | AT5G50230 | 24.820 | 278 | 160 | 11 | 98 | 352 | 215 | 466 | 3.15e-11 | 65.5 |
| MS.gene70595.t1 | AT3G18130 | 27.731 | 238 | 124 | 9 | 76 | 307 | 30 | 225 | 6.78e-11 | 63.5 |
| MS.gene70595.t1 | AT4G02730 | 29.801 | 151 | 80 | 5 | 261 | 409 | 31 | 157 | 9.29e-11 | 63.2 |
Find 89 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGTTTGTCTATTT+TGG | 0.194004 | 3.1:-64295453 | MS.gene70595:CDS |
| CTGATAAAACCATAAGAATT+TGG | 0.253308 | 3.1:-64295493 | MS.gene70595:CDS |
| TACCTTCAACCTCAACAATT+AGG | 0.263211 | 3.1:-64296478 | MS.gene70595:CDS |
| GATTGTTGTGTCTTCTTCAT+AGG | 0.263506 | 3.1:+64296249 | None:intergenic |
| AACTAAAGATTTCACTTGTT+TGG | 0.280735 | 3.1:-64295900 | MS.gene70595:CDS |
| AACACCCCTCCAAATTCTTA+TGG | 0.289644 | 3.1:+64295484 | None:intergenic |
| TAGTTTGGACTGTGACATTA+AGG | 0.303285 | 3.1:-64295333 | MS.gene70595:CDS |
| AGCGACGACAACGACGAAAA+TGG | 0.332042 | 3.1:-64295605 | MS.gene70595:CDS |
| TTTAGTCTATAGTGGTAGTT+TGG | 0.333469 | 3.1:-64295348 | MS.gene70595:CDS |
| TCCCTTGCTCTTTCTAAAGA+TGG | 0.347660 | 3.1:-64295971 | MS.gene70595:CDS |
| GTGGGAAGTGTGGTTGATGT+GGG | 0.370823 | 3.1:+64296390 | None:intergenic |
| CAATTCTGGTATCAATGCTT+TGG | 0.382949 | 3.1:-64295705 | MS.gene70595:CDS |
| ACCTTCAACCTCAACAATTA+GGG | 0.384929 | 3.1:-64296477 | MS.gene70595:CDS |
| TTTGTTTGATTGAATTACTA+AGG | 0.389364 | 3.1:+64296189 | None:intergenic |
| TGCTTGTGATAGATCAATAT+TGG | 0.389864 | 3.1:-64295648 | MS.gene70595:CDS |
| AGAGTTGTTGTGGGATTTGA+GGG | 0.409026 | 3.1:+64296357 | None:intergenic |
| GCGGTTGTTGTTTCTTATGA+TGG | 0.416238 | 3.1:-64295842 | MS.gene70595:CDS |
| GGGACAGAACAATCAAAATC+TGG | 0.425270 | 3.1:-64295925 | MS.gene70595:CDS |
| ACCTTGGAGAAACACAATTC+TGG | 0.431617 | 3.1:-64295719 | MS.gene70595:CDS |
| GGGATTGTGACGAGGGTTGA+GGG | 0.435180 | 3.1:+64296411 | None:intergenic |
| GTTCTGGTTGGTGCATTAAG+AGG | 0.438267 | 3.1:-64295575 | MS.gene70595:CDS |
| AAGAGTTGTTGTGGGATTTG+AGG | 0.442653 | 3.1:+64296356 | None:intergenic |
| GTGATAGATCAATATTGGTA+TGG | 0.453135 | 3.1:-64295643 | MS.gene70595:CDS |
| CCATGTTGTGATTTCTCTGT+CGG | 0.456976 | 3.1:+64296282 | None:intergenic |
| ACATTCCCTTGTTGATACCT+TGG | 0.457002 | 3.1:-64295735 | MS.gene70595:CDS |
| GGGGATTGTGACGAGGGTTG+AGG | 0.459466 | 3.1:+64296410 | None:intergenic |
| ACCCTAATTGTTGAGGTTGA+AGG | 0.465908 | 3.1:+64296476 | None:intergenic |
| GAGAGTGAGAGAGGATGTGT+AGG | 0.475277 | 3.1:+64296333 | None:intergenic |
| CAACAAAGTAATAGCAGGAA+AGG | 0.477780 | 3.1:-64296224 | MS.gene70595:CDS |
| GATGAATCTATTCTATATTC+CGG | 0.478003 | 3.1:-64295671 | MS.gene70595:CDS |
| TTCGGTAAATTCCTCCTCAC+TGG | 0.482358 | 3.1:-64296310 | MS.gene70595:CDS |
| AAGACCATAAAATCCGTGTC+TGG | 0.486087 | 3.1:-64296144 | MS.gene70595:CDS |
| GGTGGGAAGTGTGGTTGATG+TGG | 0.489772 | 3.1:+64296389 | None:intergenic |
| ATTGTTGAGGTTGAAGGTAG+TGG | 0.497025 | 3.1:+64296482 | None:intergenic |
| TGGACTGTGACATTAAGGTT+TGG | 0.498273 | 3.1:-64295328 | MS.gene70595:CDS |
| ACATCCTCTCTCACTCTCTT+CGG | 0.500584 | 3.1:-64296328 | MS.gene70595:CDS |
| TTCCATCTTTAGAAAGAGCA+AGG | 0.503229 | 3.1:+64295969 | None:intergenic |
| GGTCTTGATGAGCACTGAAA+AGG | 0.506634 | 3.1:+64296161 | None:intergenic |
| GGTAGAATAATTTAGATAGC+AGG | 0.511696 | 3.1:+64295293 | None:intergenic |
| TATTGTGTTTAGCTGTTGTG+TGG | 0.515512 | 3.1:-64295538 | MS.gene70595:CDS |
| TGATGTGGGGATTGTGACGA+GGG | 0.520065 | 3.1:+64296404 | None:intergenic |
| TGGGAAGTGTGGTTGATGTG+GGG | 0.523842 | 3.1:+64296391 | None:intergenic |
| TATAGCATCATCGTGTGCGT+TGG | 0.524899 | 3.1:+64295868 | None:intergenic |
| AAAGTGTGGAAGAATCTTCA+AGG | 0.525692 | 3.1:-64295785 | MS.gene70595:CDS |
| ATAAGAATTTGGAGGGGTGT+TGG | 0.529006 | 3.1:-64295482 | MS.gene70595:CDS |
| TTGATGTGGGGATTGTGACG+AGG | 0.538964 | 3.1:+64296403 | None:intergenic |
| ATCAACAACAAAGTAATAGC+AGG | 0.543641 | 3.1:-64296229 | MS.gene70595:CDS |
| TGTGTAGGAAGAGTTGTTGT+GGG | 0.543920 | 3.1:+64296348 | None:intergenic |
| GGAGGCTGCGTTGTGAAGTG+AGG | 0.545239 | 3.1:+64296446 | None:intergenic |
| GTAGTGGTTGGAGTGAGATG+AGG | 0.547014 | 3.1:+64296498 | None:intergenic |
| TTGAGGTTGAAGGTAGTGGT+TGG | 0.548826 | 3.1:+64296486 | None:intergenic |
| CGTTGGTTAATTTCCAGACA+CGG | 0.549331 | 3.1:+64296131 | None:intergenic |
| TATTGATCTATCACAAGCAC+CGG | 0.554977 | 3.1:+64295652 | None:intergenic |
| TTATGATGAGGTGGGAAGTG+TGG | 0.555083 | 3.1:+64296380 | None:intergenic |
| TGATAGATCAATATTGGTAT+GGG | 0.557167 | 3.1:-64295642 | MS.gene70595:CDS |
| ATTGTGTTTAGCTGTTGTGT+GGG | 0.558122 | 3.1:-64295537 | MS.gene70595:CDS |
| TAAAACCATAAGAATTTGGA+GGG | 0.559125 | 3.1:-64295489 | MS.gene70595:CDS |
| TTTACCGAAGAGAGTGAGAG+AGG | 0.559757 | 3.1:+64296324 | None:intergenic |
| TGTTGTGTCTTCTTCATAGG+TGG | 0.560022 | 3.1:+64296252 | None:intergenic |
| AACAAAGTAATAGCAGGAAA+GGG | 0.563035 | 3.1:-64296223 | MS.gene70595:CDS |
| TTGTGACGAGGGTTGAGGGA+AGG | 0.567186 | 3.1:+64296415 | None:intergenic |
| GAAGCACGGTCACCAAGTGT+TGG | 0.569276 | 3.1:+64296076 | None:intergenic |
| ACCAGAATTGTGTTTCTCCA+AGG | 0.570524 | 3.1:+64295718 | None:intergenic |
| ATAAAACCATAAGAATTTGG+AGG | 0.571975 | 3.1:-64295490 | MS.gene70595:CDS |
| TTTGAGGGTTATGATGAGGT+GGG | 0.572272 | 3.1:+64296372 | None:intergenic |
| GAGGCTGCGTTGTGAAGTGA+GGG | 0.579525 | 3.1:+64296447 | None:intergenic |
| TGTGTCTACGAATTTGGACA+TGG | 0.587510 | 3.1:+64296032 | None:intergenic |
| GTCTTGATGAGCACTGAAAA+GGG | 0.588648 | 3.1:+64296162 | None:intergenic |
| ATGCACGTGGGTTCATCATG+TGG | 0.591120 | 3.1:-64296005 | MS.gene70595:CDS |
| GGGATTTGAGGGTTATGATG+AGG | 0.594826 | 3.1:+64296368 | None:intergenic |
| ATTTGAGGGTTATGATGAGG+TGG | 0.595558 | 3.1:+64296371 | None:intergenic |
| ATGTGTAGGAAGAGTTGTTG+TGG | 0.597938 | 3.1:+64296347 | None:intergenic |
| GTAGCAACACTTCCAACACT+TGG | 0.604456 | 3.1:-64296088 | MS.gene70595:CDS |
| TCCATCTTTAGAAAGAGCAA+GGG | 0.605319 | 3.1:+64295970 | None:intergenic |
| GAGGTTGACCCTAATTGTTG+AGG | 0.610635 | 3.1:+64296469 | None:intergenic |
| ATGGAATATCACTATGACAG+TGG | 0.625164 | 3.1:-64296526 | MS.gene70595:CDS |
| CTGATAAAAGAATCAAAGTG+TGG | 0.636026 | 3.1:-64295799 | MS.gene70595:CDS |
| TTGGTATGGGAGAAAGAAGA+CGG | 0.639629 | 3.1:-64295629 | MS.gene70595:CDS |
| TGTCGGATGAACCAGTGAGG+AGG | 0.641223 | 3.1:+64296299 | None:intergenic |
| TGAGGGAAGGAACTGAGAGG+AGG | 0.642268 | 3.1:+64296428 | None:intergenic |
| GTTTCTCCAAGGTATCAACA+AGG | 0.648819 | 3.1:+64295729 | None:intergenic |
| TATGATGGAACTGTCTACAG+TGG | 0.654469 | 3.1:-64295827 | MS.gene70595:CDS |
| CCGACAGAGAAATCACAACA+TGG | 0.662721 | 3.1:-64296282 | MS.gene70595:CDS |
| GCTGCGTTGTGAAGTGAGGG+AGG | 0.663813 | 3.1:+64296450 | None:intergenic |
| TTTCTCCAAGGTATCAACAA+GGG | 0.666471 | 3.1:+64295730 | None:intergenic |
| AAAACCATAAGAATTTGGAG+GGG | 0.688455 | 3.1:-64295488 | MS.gene70595:CDS |
| GGTTGAGGGAAGGAACTGAG+AGG | 0.692947 | 3.1:+64296425 | None:intergenic |
| CTCTGTCGGATGAACCAGTG+AGG | 0.707922 | 3.1:+64296296 | None:intergenic |
| ACACGATGATGCTATAAACG+CGG | 0.742968 | 3.1:-64295861 | MS.gene70595:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATTGAATTACTA+AGG | + | chr3.1:64295644-64295663 | None:intergenic | 20.0% |
| !!! | TTATTGTTGTTTGTCTATTT+TGG | - | chr3.1:64296377-64296396 | MS.gene70595:CDS | 20.0% |
| ! | AACTAAAGATTTCACTTGTT+TGG | - | chr3.1:64295930-64295949 | MS.gene70595:CDS | 25.0% |
| ! | ATAAAACCATAAGAATTTGG+AGG | - | chr3.1:64296340-64296359 | MS.gene70595:CDS | 25.0% |
| ! | CTGATAAAACCATAAGAATT+TGG | - | chr3.1:64296337-64296356 | MS.gene70595:CDS | 25.0% |
| ! | GATGAATCTATTCTATATTC+CGG | - | chr3.1:64296159-64296178 | MS.gene70595:CDS | 25.0% |
| ! | TAAAACCATAAGAATTTGGA+GGG | - | chr3.1:64296341-64296360 | MS.gene70595:CDS | 25.0% |
| ! | TGATAGATCAATATTGGTAT+GGG | - | chr3.1:64296188-64296207 | MS.gene70595:CDS | 25.0% |
| !!! | ATTTTTTGTGTCTACGAATT+TGG | + | chr3.1:64295807-64295826 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATTAAGATTT+TGG | + | chr3.1:64295779-64295798 | None:intergenic | 25.0% |
| AAAACCATAAGAATTTGGAG+GGG | - | chr3.1:64296342-64296361 | MS.gene70595:CDS | 30.0% | |
| AACAAAGTAATAGCAGGAAA+GGG | - | chr3.1:64295607-64295626 | MS.gene70595:CDS | 30.0% | |
| ATCAACAACAAAGTAATAGC+AGG | - | chr3.1:64295601-64295620 | MS.gene70595:CDS | 30.0% | |
| CCACTATAGACTAAAAAAGA+TGG | + | chr3.1:64296477-64296496 | None:intergenic | 30.0% | |
| CTGATAAAAGAATCAAAGTG+TGG | - | chr3.1:64296031-64296050 | MS.gene70595:CDS | 30.0% | |
| GTGATAGATCAATATTGGTA+TGG | - | chr3.1:64296187-64296206 | MS.gene70595:CDS | 30.0% | |
| TGCTTGTGATAGATCAATAT+TGG | - | chr3.1:64296182-64296201 | MS.gene70595:CDS | 30.0% | |
| TTTAGTCTATAGTGGTAGTT+TGG | - | chr3.1:64296482-64296501 | MS.gene70595:CDS | 30.0% | |
| ! | AGTTTTTGTACTCTGTTTCA+TGG | - | chr3.1:64295884-64295903 | MS.gene70595:CDS | 30.0% |
| ! | CTACATGAGTGTATTTTGTT+TGG | + | chr3.1:64295726-64295745 | None:intergenic | 30.0% |
| ! | GTTTTTGTACTCTGTTTCAT+GGG | - | chr3.1:64295885-64295904 | MS.gene70595:CDS | 30.0% |
| !! | TGTTGTTTGTCTATTTTGGA+AGG | - | chr3.1:64296381-64296400 | MS.gene70595:CDS | 30.0% |
| !!! | CCATCTTTTTTAGTCTATAG+TGG | - | chr3.1:64296474-64296493 | MS.gene70595:CDS | 30.0% |
| !!! | GAATTTGGACATGGTTTTTT+GGG | + | chr3.1:64295792-64295811 | None:intergenic | 30.0% |
| AAAGTGTGGAAGAATCTTCA+AGG | - | chr3.1:64296045-64296064 | MS.gene70595:CDS | 35.0% | |
| ACCTTCAACCTCAACAATTA+GGG | - | chr3.1:64295353-64295372 | MS.gene70595:CDS | 35.0% | |
| ATGGAATATCACTATGACAG+TGG | - | chr3.1:64295304-64295323 | MS.gene70595:CDS | 35.0% | |
| ATTGTGTTTAGCTGTTGTGT+GGG | - | chr3.1:64296293-64296312 | MS.gene70595:CDS | 35.0% | |
| CAACAAAGTAATAGCAGGAA+AGG | - | chr3.1:64295606-64295625 | MS.gene70595:CDS | 35.0% | |
| CAACGACGAAAATGGAAAAA+TGG | - | chr3.1:64296233-64296252 | MS.gene70595:CDS | 35.0% | |
| CAATTCTGGTATCAATGCTT+TGG | - | chr3.1:64296125-64296144 | MS.gene70595:CDS | 35.0% | |
| CGAAAATGGAAAAATGGTTC+TGG | - | chr3.1:64296239-64296258 | MS.gene70595:CDS | 35.0% | |
| GATTGTTGTGTCTTCTTCAT+AGG | + | chr3.1:64295584-64295603 | None:intergenic | 35.0% | |
| TACCTTCAACCTCAACAATT+AGG | - | chr3.1:64295352-64295371 | MS.gene70595:CDS | 35.0% | |
| TAGACACAAAAAATGCACGT+GGG | - | chr3.1:64295813-64295832 | MS.gene70595:CDS | 35.0% | |
| TAGTTTGGACTGTGACATTA+AGG | - | chr3.1:64296497-64296516 | MS.gene70595:CDS | 35.0% | |
| TATTGATCTATCACAAGCAC+CGG | + | chr3.1:64296181-64296200 | None:intergenic | 35.0% | |
| TATTGTGTTTAGCTGTTGTG+TGG | - | chr3.1:64296292-64296311 | MS.gene70595:CDS | 35.0% | |
| ! | ATTTCCAGACACGGATTTTA+TGG | + | chr3.1:64295693-64295712 | None:intergenic | 35.0% |
| ! | TCCATCTTTAGAAAGAGCAA+GGG | + | chr3.1:64295863-64295882 | None:intergenic | 35.0% |
| ! | TTCCATCTTTAGAAAGAGCA+AGG | + | chr3.1:64295864-64295883 | None:intergenic | 35.0% |
| ! | TTTCTCCAAGGTATCAACAA+GGG | + | chr3.1:64296103-64296122 | None:intergenic | 35.0% |
| !! | AATGGAAAAATGGTTCTGGT+TGG | - | chr3.1:64296243-64296262 | MS.gene70595:CDS | 35.0% |
| !! | AGTGTATTTTGTTTGGTCGT+TGG | + | chr3.1:64295719-64295738 | None:intergenic | 35.0% |
| !! | GGATTAAGATTTTGGAAGCA+CGG | + | chr3.1:64295771-64295790 | None:intergenic | 35.0% |
| !! | TCTATTTTGGAAGGACATCA+AGG | - | chr3.1:64296390-64296409 | MS.gene70595:CDS | 35.0% |
| !!! | CGAATTTGGACATGGTTTTT+TGG | + | chr3.1:64295793-64295812 | None:intergenic | 35.0% |
| AACACCCCTCCAAATTCTTA+TGG | + | chr3.1:64296349-64296368 | None:intergenic | 40.0% | |
| AAGACCATAAAATCCGTGTC+TGG | - | chr3.1:64295686-64295705 | MS.gene70595:CDS | 40.0% | |
| AAGAGTTGTTGTGGGATTTG+AGG | + | chr3.1:64295477-64295496 | None:intergenic | 40.0% | |
| ACACGATGATGCTATAAACG+CGG | - | chr3.1:64295969-64295988 | MS.gene70595:CDS | 40.0% | |
| ACATTCCCTTGTTGATACCT+TGG | - | chr3.1:64296095-64296114 | MS.gene70595:CDS | 40.0% | |
| ACCAGAATTGTGTTTCTCCA+AGG | + | chr3.1:64296115-64296134 | None:intergenic | 40.0% | |
| ACCCTAATTGTTGAGGTTGA+AGG | + | chr3.1:64295357-64295376 | None:intergenic | 40.0% | |
| ACCTTGGAGAAACACAATTC+TGG | - | chr3.1:64296111-64296130 | MS.gene70595:CDS | 40.0% | |
| AGAGTTGTTGTGGGATTTGA+GGG | + | chr3.1:64295476-64295495 | None:intergenic | 40.0% | |
| ATGTGTAGGAAGAGTTGTTG+TGG | + | chr3.1:64295486-64295505 | None:intergenic | 40.0% | |
| ATTGTTGAGGTTGAAGGTAG+TGG | + | chr3.1:64295351-64295370 | None:intergenic | 40.0% | |
| ATTTGAGGGTTATGATGAGG+TGG | + | chr3.1:64295462-64295481 | None:intergenic | 40.0% | |
| CCATGTTGTGATTTCTCTGT+CGG | + | chr3.1:64295551-64295570 | None:intergenic | 40.0% | |
| GGGACAGAACAATCAAAATC+TGG | - | chr3.1:64295905-64295924 | MS.gene70595:CDS | 40.0% | |
| GTAGACACAAAAAATGCACG+TGG | - | chr3.1:64295812-64295831 | MS.gene70595:CDS | 40.0% | |
| TGGACTGTGACATTAAGGTT+TGG | - | chr3.1:64296502-64296521 | MS.gene70595:CDS | 40.0% | |
| TGTGTAGGAAGAGTTGTTGT+GGG | + | chr3.1:64295485-64295504 | None:intergenic | 40.0% | |
| TGTGTCTACGAATTTGGACA+TGG | + | chr3.1:64295801-64295820 | None:intergenic | 40.0% | |
| TGTTGTGTCTTCTTCATAGG+TGG | + | chr3.1:64295581-64295600 | None:intergenic | 40.0% | |
| TTGGTATGGGAGAAAGAAGA+CGG | - | chr3.1:64296201-64296220 | MS.gene70595:CDS | 40.0% | |
| TTTGAGGGTTATGATGAGGT+GGG | + | chr3.1:64295461-64295480 | None:intergenic | 40.0% | |
| ! | ATAAGAATTTGGAGGGGTGT+TGG | - | chr3.1:64296348-64296367 | MS.gene70595:CDS | 40.0% |
| ! | CGTTGGTTAATTTCCAGACA+CGG | + | chr3.1:64295702-64295721 | None:intergenic | 40.0% |
| ! | GTTTCTCCAAGGTATCAACA+AGG | + | chr3.1:64296104-64296123 | None:intergenic | 40.0% |
| ! | TATGATGGAACTGTCTACAG+TGG | - | chr3.1:64296003-64296022 | MS.gene70595:CDS | 40.0% |
| ! | TCCCTTGCTCTTTCTAAAGA+TGG | - | chr3.1:64295859-64295878 | MS.gene70595:CDS | 40.0% |
| !! | GCGGTTGTTGTTTCTTATGA+TGG | - | chr3.1:64295988-64296007 | MS.gene70595:CDS | 40.0% |
| !! | GTCTTGATGAGCACTGAAAA+GGG | + | chr3.1:64295671-64295690 | None:intergenic | 40.0% |
| ACATCCTCTCTCACTCTCTT+CGG | - | chr3.1:64295502-64295521 | MS.gene70595:CDS | 45.0% | |
| CCGACAGAGAAATCACAACA+TGG | - | chr3.1:64295548-64295567 | MS.gene70595:CDS | 45.0% | |
| GAGGTTGACCCTAATTGTTG+AGG | + | chr3.1:64295364-64295383 | None:intergenic | 45.0% | |
| GGGATTTGAGGGTTATGATG+AGG | + | chr3.1:64295465-64295484 | None:intergenic | 45.0% | |
| GTAGCAACACTTCCAACACT+TGG | - | chr3.1:64295742-64295761 | MS.gene70595:CDS | 45.0% | |
| TATAGCATCATCGTGTGCGT+TGG | + | chr3.1:64295965-64295984 | None:intergenic | 45.0% | |
| TTATGATGAGGTGGGAAGTG+TGG | + | chr3.1:64295453-64295472 | None:intergenic | 45.0% | |
| TTCGGTAAATTCCTCCTCAC+TGG | - | chr3.1:64295520-64295539 | MS.gene70595:CDS | 45.0% | |
| TTTACCGAAGAGAGTGAGAG+AGG | + | chr3.1:64295509-64295528 | None:intergenic | 45.0% | |
| ! | GTGTGGGATTTTGTGTGTAG+TGG | - | chr3.1:64296309-64296328 | MS.gene70595:CDS | 45.0% |
| ! | GTTCTGGTTGGTGCATTAAG+AGG | - | chr3.1:64296255-64296274 | MS.gene70595:CDS | 45.0% |
| ! | TTGAGGTTGAAGGTAGTGGT+TGG | + | chr3.1:64295347-64295366 | None:intergenic | 45.0% |
| !! | GGTCTTGATGAGCACTGAAA+AGG | + | chr3.1:64295672-64295691 | None:intergenic | 45.0% |
| AGCGACGACAACGACGAAAA+TGG | - | chr3.1:64296225-64296244 | MS.gene70595:CDS | 50.0% | |
| ATGCACGTGGGTTCATCATG+TGG | - | chr3.1:64295825-64295844 | MS.gene70595:CDS | 50.0% | |
| GAGAGTGAGAGAGGATGTGT+AGG | + | chr3.1:64295500-64295519 | None:intergenic | 50.0% | |
| GTAGTGGTTGGAGTGAGATG+AGG | + | chr3.1:64295335-64295354 | None:intergenic | 50.0% | |
| TGATGTGGGGATTGTGACGA+GGG | + | chr3.1:64295429-64295448 | None:intergenic | 50.0% | |
| TTGATGTGGGGATTGTGACG+AGG | + | chr3.1:64295430-64295449 | None:intergenic | 50.0% | |
| ! | GTGGGAAGTGTGGTTGATGT+GGG | + | chr3.1:64295443-64295462 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGGTTGATGTG+GGG | + | chr3.1:64295442-64295461 | None:intergenic | 50.0% |
| CTCTGTCGGATGAACCAGTG+AGG | + | chr3.1:64295537-64295556 | None:intergenic | 55.0% | |
| GAAGCACGGTCACCAAGTGT+TGG | + | chr3.1:64295757-64295776 | None:intergenic | 55.0% | |
| GAGGCTGCGTTGTGAAGTGA+GGG | + | chr3.1:64295386-64295405 | None:intergenic | 55.0% | |
| GGGATTGTGACGAGGGTTGA+GGG | + | chr3.1:64295422-64295441 | None:intergenic | 55.0% | |
| GGTTGAGGGAAGGAACTGAG+AGG | + | chr3.1:64295408-64295427 | None:intergenic | 55.0% | |
| TGAGGGAAGGAACTGAGAGG+AGG | + | chr3.1:64295405-64295424 | None:intergenic | 55.0% | |
| TGTCGGATGAACCAGTGAGG+AGG | + | chr3.1:64295534-64295553 | None:intergenic | 55.0% | |
| TTGTGACGAGGGTTGAGGGA+AGG | + | chr3.1:64295418-64295437 | None:intergenic | 55.0% | |
| ! | GGTGGGAAGTGTGGTTGATG+TGG | + | chr3.1:64295444-64295463 | None:intergenic | 55.0% |
| GCTGCGTTGTGAAGTGAGGG+AGG | + | chr3.1:64295383-64295402 | None:intergenic | 60.0% | |
| GGAGGCTGCGTTGTGAAGTG+AGG | + | chr3.1:64295387-64295406 | None:intergenic | 60.0% | |
| GGGGATTGTGACGAGGGTTG+AGG | + | chr3.1:64295423-64295442 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64295304 | 64296548 | 64295304 | ID=MS.gene70595 |
| chr3.1 | mRNA | 64295304 | 64296548 | 64295304 | ID=MS.gene70595.t1;Parent=MS.gene70595 |
| chr3.1 | exon | 64295304 | 64296548 | 64295304 | ID=MS.gene70595.t1.exon1;Parent=MS.gene70595.t1 |
| chr3.1 | CDS | 64295304 | 64296548 | 64295304 | ID=cds.MS.gene70595.t1;Parent=MS.gene70595.t1 |
| Gene Sequence |
| Protein sequence |
