Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70781.t1 | XP_013469022.1 | 94.3 | 297 | 5 | 1 | 1 | 285 | 1 | 297 | 3.00E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70781.t1 | Q94AH1 | 65.4 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 2.0e-107 | 390.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70781.t1 | I3SZ53 | 94.3 | 297 | 5 | 1 | 1 | 285 | 1 | 297 | 2.2e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene70781 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene70781 | 0.800243 | 1.58E-48 | -1.69E-46 |
| MS.gene053272 | MS.gene70781 | -0.80252 | 5.40E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene70781 | 0.819775 | 9.73E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene70781 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene70781 | 0.831385 | 1.72E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene70781 | -0.817127 | 3.87E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene70781 | 0.82069 | 6.00E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene70781 | 0.809804 | 1.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70781.t1 | MTR_1g081910 | 94.276 | 297 | 5 | 1 | 1 | 285 | 1 | 297 | 0.0 | 561 |
| MS.gene70781.t1 | MTR_4g109480 | 58.935 | 263 | 94 | 2 | 37 | 285 | 24 | 286 | 1.19e-99 | 293 |
| MS.gene70781.t1 | MTR_4g109480 | 55.779 | 199 | 74 | 2 | 37 | 221 | 24 | 222 | 9.45e-69 | 213 |
| MS.gene70781.t1 | MTR_4g109480 | 52.632 | 190 | 76 | 2 | 37 | 212 | 24 | 213 | 4.93e-57 | 183 |
| MS.gene70781.t1 | MTR_4g109480 | 51.852 | 189 | 77 | 2 | 37 | 211 | 24 | 212 | 9.45e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70781.t1 | AT3G05010 | 65.411 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 6.37e-139 | 394 |
| MS.gene70781.t1 | AT5G27210 | 67.037 | 270 | 77 | 1 | 28 | 285 | 28 | 297 | 7.37e-130 | 370 |
Find 51 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCCTTGTTTACTTCTTC+TGG | 0.137493 | 1.2:-60720227 | MS.gene70781:CDS |
| TTCTTCTGGAATGCTGTTTC+TGG | 0.158996 | 1.2:-60720213 | MS.gene70781:CDS |
| CTCGTGCTCACCGTTGTTTA+TGG | 0.242634 | 1.2:-60719905 | MS.gene70781:CDS |
| TATTGTTCATGTATCATTCT+AGG | 0.242876 | 1.2:-60719877 | MS.gene70781:CDS |
| ACTGGAAACGGCGCTGGTTT+TGG | 0.246426 | 1.2:-60719679 | MS.gene70781:CDS |
| ACTGCTGTATATTACATTTC+TGG | 0.250927 | 1.2:-60719518 | MS.gene70781:CDS |
| CTATATATCTATTTGCATTT+GGG | 0.257819 | 1.2:-60719997 | MS.gene70781:CDS |
| TTGTTTGCTTGCGGGCTTAC+TGG | 0.258766 | 1.2:-60719697 | MS.gene70781:CDS |
| GCTATATATCTATTTGCATT+TGG | 0.295526 | 1.2:-60719998 | MS.gene70781:CDS |
| ACAAAAGAATTACCTTTAAC+AGG | 0.300915 | 1.2:+60720087 | None:intergenic |
| CAATTGGATTGTTTGCTTGC+GGG | 0.305451 | 1.2:-60719705 | MS.gene70781:CDS |
| TCGTGCTCACCGTTGTTTAT+GGG | 0.323009 | 1.2:-60719904 | MS.gene70781:CDS |
| ATACAGCAGTGGAAGATAAA+AGG | 0.326151 | 1.2:+60719531 | None:intergenic |
| CAGGCATGGGAGTGCACTCC+TGG | 0.335049 | 1.2:-60720272 | MS.gene70781:CDS |
| GTTTCTGGAAGTGAGCTTGC+TGG | 0.348925 | 1.2:-60720198 | MS.gene70781:CDS |
| GAAGATTCTTCTTCTTCTAC+TGG | 0.367957 | 1.2:-60721236 | MS.gene70781:CDS |
| ATGTTCATCTTGAATGCAAT+TGG | 0.373509 | 1.2:-60719721 | MS.gene70781:CDS |
| TTTCGTATTATGCTTCTCTT+TGG | 0.381366 | 1.2:-60721055 | MS.gene70781:CDS |
| GAAGCATTGACACGAACTTT+TGG | 0.389803 | 1.2:-60720140 | MS.gene70781:CDS |
| GGTATATCCGGTATCATTGT+TGG | 0.395818 | 1.2:-60720119 | MS.gene70781:CDS |
| TCGCTTGAAGTGGAACTTGT+GGG | 0.460605 | 1.2:-60719939 | MS.gene70781:CDS |
| TAACAAAGGGATTCACCGAT+TGG | 0.465604 | 1.2:-60721208 | MS.gene70781:CDS |
| TACTCTGAAATGAAAGATGC+TGG | 0.469422 | 1.2:-60719344 | MS.gene70781:CDS |
| AACAAAGGGATTCACCGATT+GGG | 0.473818 | 1.2:-60721207 | MS.gene70781:CDS |
| GATCAGTGTCGATGAACAAC+GGG | 0.476434 | 1.2:+60719972 | None:intergenic |
| GGGCTTACTGGAAACGGCGC+TGG | 0.478494 | 1.2:-60719685 | MS.gene70781:CDS |
| GCTTGCGGGCTTACTGGAAA+CGG | 0.488027 | 1.2:-60719691 | MS.gene70781:CDS |
| TTCCATGTTAGCTCTTTCCC+AGG | 0.494192 | 1.2:+60720254 | None:intergenic |
| ATCAAAACCAACAATGATAC+CGG | 0.504747 | 1.2:+60720112 | None:intergenic |
| CTCGCTTGAAGTGGAACTTG+TGG | 0.521442 | 1.2:-60719940 | MS.gene70781:CDS |
| TATATATCTATTTGCATTTG+GGG | 0.524806 | 1.2:-60719996 | MS.gene70781:CDS |
| GCAATTGGATTGTTTGCTTG+CGG | 0.529142 | 1.2:-60719706 | MS.gene70781:CDS |
| TTGTTCATCGACACTGATCA+TGG | 0.535592 | 1.2:-60719968 | MS.gene70781:CDS |
| CAACGGTGAGCACGAGCTTG+TGG | 0.536256 | 1.2:+60719912 | None:intergenic |
| CTCCTGGGAAAGAGCTAACA+TGG | 0.539196 | 1.2:-60720256 | MS.gene70781:CDS |
| ATCATTCTAGGTGGAGAGAA+AGG | 0.546944 | 1.2:-60719865 | MS.gene70781:CDS |
| ATGGTACTCCTCGCTTGAAG+TGG | 0.567386 | 1.2:-60719949 | MS.gene70781:CDS |
| CTTCAGGGAAATAATGCAAG+TGG | 0.588641 | 1.2:-60720167 | MS.gene70781:CDS |
| GTGACACTCGAAAACCCAAT+CGG | 0.591095 | 1.2:+60721193 | None:intergenic |
| AGGTGGAGAGAAAGGTTACC+CGG | 0.604674 | 1.2:-60719857 | MS.gene70781:intron |
| AGGCATGGGAGTGCACTCCT+GGG | 0.610220 | 1.2:-60720271 | MS.gene70781:CDS |
| ATCGGTGCTATCAATAACAA+AGG | 0.618733 | 1.2:-60721258 | MS.gene70781:CDS |
| CATTCCAGAAGAAGTAAACA+AGG | 0.620907 | 1.2:+60720223 | None:intergenic |
| CACAAGTTCCACTTCAAGCG+AGG | 0.621744 | 1.2:+60719941 | None:intergenic |
| TATGATATAAGAGCGACCAT+TGG | 0.623291 | 1.2:+60721079 | None:intergenic |
| TGATCAGTGTCGATGAACAA+CGG | 0.625959 | 1.2:+60719971 | None:intergenic |
| ATAACATACTTGTAAAACGC+AGG | 0.629597 | 1.2:+60719748 | None:intergenic |
| GCAGTGGAAGATAAAAGGCA+TGG | 0.634056 | 1.2:+60719536 | None:intergenic |
| TGTTCATGTATCATTCTAGG+TGG | 0.650713 | 1.2:-60719874 | MS.gene70781:CDS |
| AGAAATGTAATATACAGCAG+TGG | 0.653445 | 1.2:+60719520 | None:intergenic |
| CAATATGAGCCCATAAACAA+CGG | 0.679882 | 1.2:+60719895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGCTGTTTATCTAAA+TGG | - | chr1.2:60719719-60719738 | MS.gene70781:CDS | 20.0% |
| !! | CTATATATCTATTTGCATTT+GGG | - | chr1.2:60720591-60720610 | MS.gene70781:intron | 20.0% |
| !! | TATATATCTATTTGCATTTG+GGG | - | chr1.2:60720592-60720611 | MS.gene70781:intron | 20.0% |
| !!! | CTTGTTTCATTTTTATTTCA+AGG | - | chr1.2:60719611-60719630 | MS.gene70781:intron | 20.0% |
| ! | AAGATAGCTTATGAAAATCT+AGG | - | chr1.2:60719883-60719902 | MS.gene70781:CDS | 25.0% |
| ! | AATAAGCTGAAAACATCTTA+TGG | + | chr1.2:60719849-60719868 | None:intergenic | 25.0% |
| ! | ACAAAAGAATTACCTTTAAC+AGG | + | chr1.2:60720504-60720523 | None:intergenic | 25.0% |
| ! | ATTGTTCTTCTTTGTATTAC+AGG | - | chr1.2:60721192-60721211 | MS.gene70781:CDS | 25.0% |
| ! | GCTATATATCTATTTGCATT+TGG | - | chr1.2:60720590-60720609 | MS.gene70781:intron | 25.0% |
| ! | TATTGTTCATGTATCATTCT+AGG | - | chr1.2:60720711-60720730 | MS.gene70781:intron | 25.0% |
| ! | TTAGAGAACATATGTTCTTA+TGG | - | chr1.2:60720054-60720073 | MS.gene70781:intron | 25.0% |
| !! | ATTGAGTTGTATATCTAAAC+AGG | - | chr1.2:60720119-60720138 | MS.gene70781:CDS | 25.0% |
| !! | TAGATTTTCATAAGCTATCT+TGG | + | chr1.2:60719884-60719903 | None:intergenic | 25.0% |
| !! | TATCTAAATGGACTTAGTTA+GGG | - | chr1.2:60719731-60719750 | MS.gene70781:CDS | 25.0% |
| !! | TTATCTAAATGGACTTAGTT+AGG | - | chr1.2:60719730-60719749 | MS.gene70781:CDS | 25.0% |
| !! | TTGAGTTGTATATCTAAACA+GGG | - | chr1.2:60720120-60720139 | MS.gene70781:CDS | 25.0% |
| !! | TTTTCTCTTCGTTTTGTATT+TGG | - | chr1.2:60719453-60719472 | MS.gene70781:intron | 25.0% |
| !!! | TAGTTCTGAACTTTATTCTT+TGG | - | chr1.2:60720965-60720984 | MS.gene70781:intron | 25.0% |
| AAGAAAGAAAGAATGAAACC+TGG | + | chr1.2:60719594-60719613 | None:intergenic | 30.0% | |
| AATCCCTACAATTAACTTAC+CGG | + | chr1.2:60720753-60720772 | None:intergenic | 30.0% | |
| ACTGCTGTATATTACATTTC+TGG | - | chr1.2:60721070-60721089 | MS.gene70781:CDS | 30.0% | |
| AGAAAGAAAGAATGAAACCT+GGG | + | chr1.2:60719593-60719612 | None:intergenic | 30.0% | |
| AGAAATGTAATATACAGCAG+TGG | + | chr1.2:60721071-60721090 | None:intergenic | 30.0% | |
| ATAACATACTTGTAAAACGC+AGG | + | chr1.2:60720843-60720862 | None:intergenic | 30.0% | |
| ATCAAAACCAACAATGATAC+CGG | + | chr1.2:60720479-60720498 | None:intergenic | 30.0% | |
| ATGCAGTATTGTTTGTAGTT+TGG | - | chr1.2:60721158-60721177 | MS.gene70781:CDS | 30.0% | |
| ATGTTCATCTTGAATGCAAT+TGG | - | chr1.2:60720867-60720886 | MS.gene70781:intron | 30.0% | |
| ATTTGTTCTGGTGATAATTC+AGG | - | chr1.2:60720297-60720316 | MS.gene70781:intron | 30.0% | |
| TATACAATGACATAAGCATG+AGG | - | chr1.2:60719780-60719799 | MS.gene70781:intron | 30.0% | |
| TTACAATGCGCTTTACTTTA+TGG | - | chr1.2:60721108-60721127 | MS.gene70781:CDS | 30.0% | |
| TTTCGTATTATGCTTCTCTT+TGG | - | chr1.2:60719533-60719552 | MS.gene70781:CDS | 30.0% | |
| ! | CTGGTTATGTATGATTAGTT+TGG | - | chr1.2:60720552-60720571 | MS.gene70781:intron | 30.0% |
| ! | TTATATCCTTTTTCTCCCTT+TGG | - | chr1.2:60720270-60720289 | MS.gene70781:CDS | 30.0% |
| !! | TCTACTGGAGTTTTAACAAA+GGG | - | chr1.2:60719367-60719386 | MS.gene70781:CDS | 30.0% |
| !! | TTCTACTGGAGTTTTAACAA+AGG | - | chr1.2:60719366-60719385 | MS.gene70781:CDS | 30.0% |
| AAAATCTAGGTAGTCAATCC+CGG | - | chr1.2:60719896-60719915 | MS.gene70781:CDS | 35.0% | |
| AACTAGAATAGCAGCAACTA+AGG | + | chr1.2:60720146-60720165 | None:intergenic | 35.0% | |
| AATCATACATAACCAGCACA+AGG | + | chr1.2:60720548-60720567 | None:intergenic | 35.0% | |
| ACAAAGAAGAACAATCAGTC+AGG | + | chr1.2:60721187-60721206 | None:intergenic | 35.0% | |
| ACCAGAACAAATTCAACCAA+AGG | + | chr1.2:60720289-60720308 | None:intergenic | 35.0% | |
| ATACAGCAGTGGAAGATAAA+AGG | + | chr1.2:60721060-60721079 | None:intergenic | 35.0% | |
| ATATTTCATTGTCCTTGTGC+TGG | - | chr1.2:60720533-60720552 | MS.gene70781:intron | 35.0% | |
| ATCCCTACAATTAACTTACC+GGG | + | chr1.2:60720752-60720771 | None:intergenic | 35.0% | |
| ATTCAACCAAAGGGAGAAAA+AGG | + | chr1.2:60720279-60720298 | None:intergenic | 35.0% | |
| CAATATGAGCCCATAAACAA+CGG | + | chr1.2:60720696-60720715 | None:intergenic | 35.0% | |
| CATTCCAGAAGAAGTAAACA+AGG | + | chr1.2:60720368-60720387 | None:intergenic | 35.0% | |
| CCAGAACAAATTCAACCAAA+GGG | + | chr1.2:60720288-60720307 | None:intergenic | 35.0% | |
| CTGTGTTTACTTTATCTCAC+AGG | - | chr1.2:60721003-60721022 | MS.gene70781:intron | 35.0% | |
| GAAGATTCTTCTTCTTCTAC+TGG | - | chr1.2:60719352-60719371 | MS.gene70781:CDS | 35.0% | |
| GTTCTTCTTTGTATTACAGG+AGG | - | chr1.2:60721195-60721214 | MS.gene70781:CDS | 35.0% | |
| TACCCGGTAAGTTAATTGTA+GGG | - | chr1.2:60720747-60720766 | MS.gene70781:intron | 35.0% | |
| TATGATATAAGAGCGACCAT+TGG | + | chr1.2:60719512-60719531 | None:intergenic | 35.0% | |
| TGTTCATGTATCATTCTAGG+TGG | - | chr1.2:60720714-60720733 | MS.gene70781:intron | 35.0% | |
| TTACCCGGTAAGTTAATTGT+AGG | - | chr1.2:60720746-60720765 | MS.gene70781:intron | 35.0% | |
| ! | ACACGAACTTTTGGTATATC+CGG | - | chr1.2:60720457-60720476 | MS.gene70781:intron | 35.0% |
| ! | AGCTTTTACAAACTCACCAA+TGG | - | chr1.2:60719493-60719512 | MS.gene70781:intron | 35.0% |
| ! | AGTTTGGCGTTTTCTTTGTT+AGG | - | chr1.2:60720568-60720587 | MS.gene70781:intron | 35.0% |
| ! | TTGTCCTTGTTTACTTCTTC+TGG | - | chr1.2:60720361-60720380 | MS.gene70781:intron | 35.0% |
| !! | ATCGGTGCTATCAATAACAA+AGG | - | chr1.2:60719330-60719349 | MS.gene70781:CDS | 35.0% |
| !! | TACTCTGAAATGAAAGATGC+TGG | - | chr1.2:60721244-60721263 | MS.gene70781:CDS | 35.0% |
| !!! | ATTTCTGGCAGACTTTTTTC+AGG | - | chr1.2:60721085-60721104 | MS.gene70781:CDS | 35.0% |
| !!! | TGGTTTTGATGTCCTGTTAA+AGG | - | chr1.2:60720489-60720508 | MS.gene70781:intron | 35.0% |
| !!! | TGGTTTTTTCGAATCAGACT+GGG | - | chr1.2:60721264-60721283 | MS.gene70781:CDS | 35.0% |
| !!! | TTGCTGGCTTTTTTACTTCA+GGG | - | chr1.2:60720406-60720425 | MS.gene70781:intron | 35.0% |
| ACATAAGCATGAGGCTGTTT+GGG | - | chr1.2:60719789-60719808 | MS.gene70781:intron | 40.0% | |
| ATCATTCTAGGTGGAGAGAA+AGG | - | chr1.2:60720723-60720742 | MS.gene70781:intron | 40.0% | |
| CAATTGGATTGTTTGCTTGC+GGG | - | chr1.2:60720883-60720902 | MS.gene70781:intron | 40.0% | |
| CTTCAGGGAAATAATGCAAG+TGG | - | chr1.2:60720421-60720440 | MS.gene70781:intron | 40.0% | |
| GCAATTGGATTGTTTGCTTG+CGG | - | chr1.2:60720882-60720901 | MS.gene70781:intron | 40.0% | |
| GGTATATCCGGTATCATTGT+TGG | - | chr1.2:60720469-60720488 | MS.gene70781:intron | 40.0% | |
| TAACAAAGGGATTCACCGAT+TGG | - | chr1.2:60719380-60719399 | MS.gene70781:intron | 40.0% | |
| TCTGGTGATAATTCAGGCAT+GGG | - | chr1.2:60720303-60720322 | MS.gene70781:intron | 40.0% | |
| TTAGCATTCTCAATCTCGCT+TGG | - | chr1.2:60719560-60719579 | MS.gene70781:CDS | 40.0% | |
| TTCTGGTGATAATTCAGGCA+TGG | - | chr1.2:60720302-60720321 | MS.gene70781:intron | 40.0% | |
| TTGTTCATCGACACTGATCA+TGG | - | chr1.2:60720620-60720639 | MS.gene70781:intron | 40.0% | |
| ! | AACAAAGGGATTCACCGATT+GGG | - | chr1.2:60719381-60719400 | MS.gene70781:intron | 40.0% |
| ! | ACAGGAGGAAGATTTTCACA+TGG | - | chr1.2:60721210-60721229 | MS.gene70781:CDS | 40.0% |
| ! | CCCTTTGGTTGAATTTGTTC+TGG | - | chr1.2:60720285-60720304 | MS.gene70781:intron | 40.0% |
| !! | TGATCAGTGTCGATGAACAA+CGG | + | chr1.2:60720620-60720639 | None:intergenic | 40.0% |
| !! | TTCTTCTGGAATGCTGTTTC+TGG | - | chr1.2:60720375-60720394 | MS.gene70781:intron | 40.0% |
| !!! | CTGGTTTTTTCGAATCAGAC+TGG | - | chr1.2:60721263-60721282 | MS.gene70781:CDS | 40.0% |
| !!! | CTTGCTGGCTTTTTTACTTC+AGG | - | chr1.2:60720405-60720424 | MS.gene70781:intron | 40.0% |
| !!! | GAAGCATTGACACGAACTTT+TGG | - | chr1.2:60720448-60720467 | MS.gene70781:intron | 40.0% |
| AATCCATCCTTTGCAATCCC+CGG | + | chr1.2:60719973-60719992 | None:intergenic | 45.0% | |
| ATAAGCATGAGGCTGTTTGG+GGG | - | chr1.2:60719791-60719810 | MS.gene70781:intron | 45.0% | |
| CATAAGCATGAGGCTGTTTG+GGG | - | chr1.2:60719790-60719809 | MS.gene70781:intron | 45.0% | |
| GACATAAGCATGAGGCTGTT+TGG | - | chr1.2:60719788-60719807 | MS.gene70781:intron | 45.0% | |
| GCAGTGGAAGATAAAAGGCA+TGG | + | chr1.2:60721055-60721074 | None:intergenic | 45.0% | |
| GGACTTAGTTAGGGTCTGTT+TGG | - | chr1.2:60719740-60719759 | MS.gene70781:CDS | 45.0% | |
| GTGACACTCGAAAACCCAAT+CGG | + | chr1.2:60719398-60719417 | None:intergenic | 45.0% | |
| TCGCTTGAAGTGGAACTTGT+GGG | - | chr1.2:60720649-60720668 | MS.gene70781:intron | 45.0% | |
| TCGTGCTCACCGTTGTTTAT+GGG | - | chr1.2:60720684-60720703 | MS.gene70781:intron | 45.0% | |
| ! | TTCCATGTTAGCTCTTTCCC+AGG | + | chr1.2:60720337-60720356 | None:intergenic | 45.0% |
| !! | ATCCCGTTATCCCACTTTTG+GGG | + | chr1.2:60719933-60719952 | None:intergenic | 45.0% |
| !! | GATCAGTGTCGATGAACAAC+GGG | + | chr1.2:60720619-60720638 | None:intergenic | 45.0% |
| !! | GATCCCGTTATCCCACTTTT+GGG | + | chr1.2:60719934-60719953 | None:intergenic | 45.0% |
| !!! | ATTGGGTTTTCGAGTGTCAC+GGG | - | chr1.2:60719398-60719417 | MS.gene70781:intron | 45.0% |
| !!! | GATTGGGTTTTCGAGTGTCA+CGG | - | chr1.2:60719397-60719416 | MS.gene70781:intron | 45.0% |
| !!! | TTTTCGAGTGTCACGGGTTT+TGG | - | chr1.2:60719404-60719423 | MS.gene70781:intron | 45.0% |
| AGGCTGTTTGGGGGAACTTA+TGG | - | chr1.2:60719800-60719819 | MS.gene70781:intron | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | - | chr1.2:60719903-60719922 | MS.gene70781:CDS | 50.0% | |
| AGGTGGAGAGAAAGGTTACC+CGG | - | chr1.2:60720731-60720750 | MS.gene70781:intron | 50.0% | |
| ATCCCAGTTAGCAGGATCAC+CGG | - | chr1.2:60719951-60719970 | MS.gene70781:CDS | 50.0% | |
| ATGGTACTCCTCGCTTGAAG+TGG | - | chr1.2:60720639-60720658 | MS.gene70781:intron | 50.0% | |
| CACAAGTTCCACTTCAAGCG+AGG | + | chr1.2:60720650-60720669 | None:intergenic | 50.0% | |
| CGACCCCAAAAGTGGGATAA+CGG | - | chr1.2:60719927-60719946 | MS.gene70781:CDS | 50.0% | |
| CTCCTGGGAAAGAGCTAACA+TGG | - | chr1.2:60720332-60720351 | MS.gene70781:intron | 50.0% | |
| CTCGCTTGAAGTGGAACTTG+TGG | - | chr1.2:60720648-60720667 | MS.gene70781:intron | 50.0% | |
| CTCGTGCTCACCGTTGTTTA+TGG | - | chr1.2:60720683-60720702 | MS.gene70781:intron | 50.0% | |
| GACCCCAAAAGTGGGATAAC+GGG | - | chr1.2:60719928-60719947 | MS.gene70781:CDS | 50.0% | |
| TTGTTTGCTTGCGGGCTTAC+TGG | - | chr1.2:60720891-60720910 | MS.gene70781:intron | 50.0% | |
| ! | ATAACGGGATCCCAGTTAGC+AGG | - | chr1.2:60719943-60719962 | MS.gene70781:CDS | 50.0% |
| ! | GGATCCCGTTATCCCACTTT+TGG | + | chr1.2:60719935-60719954 | None:intergenic | 50.0% |
| ! | GTTTCTGGAAGTGAGCTTGC+TGG | - | chr1.2:60720390-60720409 | MS.gene70781:intron | 50.0% |
| AACGCAGGTCTTGCTGCAGA+AGG | + | chr1.2:60720828-60720847 | None:intergenic | 55.0% | |
| AGGATCACCGGGGATTGCAA+AGG | - | chr1.2:60719963-60719982 | MS.gene70781:CDS | 55.0% | |
| ATAGCGGTCGACCCCAAAAG+TGG | - | chr1.2:60719919-60719938 | MS.gene70781:CDS | 55.0% | |
| GCTTGCGGGCTTACTGGAAA+CGG | - | chr1.2:60720897-60720916 | MS.gene70781:intron | 55.0% | |
| TAGCGGTCGACCCCAAAAGT+GGG | - | chr1.2:60719920-60719939 | MS.gene70781:CDS | 55.0% | |
| TCACCGGGGATTGCAAAGGA+TGG | - | chr1.2:60719967-60719986 | MS.gene70781:CDS | 55.0% | |
| TCCCAGTTAGCAGGATCACC+GGG | - | chr1.2:60719952-60719971 | MS.gene70781:CDS | 55.0% | |
| !!! | ACGGCGCTGGTTTTGGTTTC+TGG | - | chr1.2:60720916-60720935 | MS.gene70781:intron | 55.0% |
| !!! | ACTGGAAACGGCGCTGGTTT+TGG | - | chr1.2:60720909-60720928 | MS.gene70781:intron | 55.0% |
| !!! | TCTCGCTTGGTGCTTTTCCC+AGG | - | chr1.2:60719573-60719592 | MS.gene70781:intron | 55.0% |
| !!! | TTTTGGGGTCGACCGCTATC+CGG | + | chr1.2:60719918-60719937 | None:intergenic | 55.0% |
| CAACGGTGAGCACGAGCTTG+TGG | + | chr1.2:60720679-60720698 | None:intergenic | 60.0% | |
| CCCAGTTAGCAGGATCACCG+GGG | - | chr1.2:60719953-60719972 | MS.gene70781:CDS | 60.0% | |
| CCCCGGTGATCCTGCTAACT+GGG | + | chr1.2:60719956-60719975 | None:intergenic | 60.0% | |
| TCCCCGGTGATCCTGCTAAC+TGG | + | chr1.2:60719957-60719976 | None:intergenic | 60.0% | |
| ! | AGGCATGGGAGTGCACTCCT+GGG | - | chr1.2:60720317-60720336 | MS.gene70781:intron | 60.0% |
| ! | TTTGGGGTCGACCGCTATCC+GGG | + | chr1.2:60719917-60719936 | None:intergenic | 60.0% |
| GGGCTTACTGGAAACGGCGC+TGG | - | chr1.2:60720903-60720922 | MS.gene70781:intron | 65.0% | |
| ! | CAGGCATGGGAGTGCACTCC+TGG | - | chr1.2:60720316-60720335 | MS.gene70781:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 60719319 | 60721291 | 60719319 | ID=MS.gene70781 |
| chr1.2 | mRNA | 60719319 | 60721291 | 60719319 | ID=MS.gene70781.t1;Parent=MS.gene70781 |
| chr1.2 | exon | 60721052 | 60721291 | 60721052 | ID=MS.gene70781.t1.exon1;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60721052 | 60721291 | 60721052 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| chr1.2 | exon | 60720100 | 60720291 | 60720100 | ID=MS.gene70781.t1.exon2;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60720100 | 60720291 | 60720100 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| chr1.2 | exon | 60719858 | 60720020 | 60719858 | ID=MS.gene70781.t1.exon3;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60719858 | 60720020 | 60719858 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| chr1.2 | exon | 60719673 | 60719775 | 60719673 | ID=MS.gene70781.t1.exon4;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60719673 | 60719775 | 60719673 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| chr1.2 | exon | 60719504 | 60719585 | 60719504 | ID=MS.gene70781.t1.exon5;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60719504 | 60719585 | 60719504 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| chr1.2 | exon | 60719319 | 60719396 | 60719319 | ID=MS.gene70781.t1.exon6;Parent=MS.gene70781.t1 |
| chr1.2 | CDS | 60719319 | 60719396 | 60719319 | ID=cds.MS.gene70781.t1;Parent=MS.gene70781.t1 |
| Gene Sequence |
| Protein sequence |
