Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70836.t1 | RHN57524.1 | 99.6 | 494 | 2 | 0 | 1 | 494 | 12 | 505 | 4.90E-270 | 939.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70836.t1 | O48791 | 75.9 | 493 | 119 | 0 | 1 | 493 | 1 | 493 | 2.5e-206 | 719.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70836.t1 | A0A072UF62 | 99.6 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 3.5e-270 | 939.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057094 | MS.gene70836 | 0.823661 | 1.23E-53 | -1.69E-46 |
MS.gene060702 | MS.gene70836 | 0.801282 | 9.69E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38829 | MS.gene70836 | PPI |
MS.gene58836 | MS.gene70836 | PPI |
MS.gene017694 | MS.gene70836 | PPI |
MS.gene70836 | MS.gene013971 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70836.t1 | MTR_5g088860 | 99.595 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1018 |
MS.gene70836.t1 | MTR_5g088860 | 99.595 | 494 | 2 | 0 | 1 | 494 | 23 | 516 | 0.0 | 1017 |
MS.gene70836.t1 | MTR_3g045180 | 81.489 | 497 | 80 | 3 | 1 | 489 | 1 | 493 | 0.0 | 817 |
MS.gene70836.t1 | MTR_7g089090 | 59.100 | 489 | 198 | 2 | 1 | 488 | 1 | 488 | 0.0 | 600 |
MS.gene70836.t1 | MTR_6g079040 | 65.854 | 123 | 40 | 2 | 90 | 211 | 41 | 162 | 4.80e-42 | 148 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70836.t1 | AT2G26770 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
MS.gene70836.t1 | AT2G26770 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
MS.gene70836.t1 | AT2G26770 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
MS.gene70836.t1 | AT3G56480 | 57.602 | 467 | 193 | 4 | 26 | 488 | 25 | 490 | 0.0 | 541 |
MS.gene70836.t1 | AT2G40820 | 55.158 | 475 | 209 | 3 | 17 | 488 | 44 | 517 | 0.0 | 535 |
MS.gene70836.t1 | AT2G40820 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
MS.gene70836.t1 | AT2G40820 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
MS.gene70836.t1 | AT2G40820 | 55.158 | 475 | 209 | 3 | 17 | 488 | 31 | 504 | 0.0 | 534 |
MS.gene70836.t1 | AT2G40820 | 55.352 | 383 | 168 | 2 | 108 | 488 | 1 | 382 | 5.59e-152 | 439 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGAGGGTAACTCGTGATTT+TGG | 0.179789 | 5.3:-71728963 | MS.gene70836:CDS |
TTAGCTCCAATTCTATAATT+AGG | 0.219735 | 5.3:+71728873 | None:intergenic |
AGATTCACTTGAATCTTTAA+AGG | 0.229773 | 5.3:-71728473 | MS.gene70836:CDS |
CTGCGGCACAGGCACTATTT+TGG | 0.245447 | 5.3:-71725497 | MS.gene70836:CDS |
GAGAGAATGTCTCAAGCTTC+TGG | 0.260429 | 5.3:-71727775 | MS.gene70836:CDS |
CGGTTTCCTAATTATAGAAT+TGG | 0.276328 | 5.3:-71728879 | MS.gene70836:CDS |
GCAAGGTTGAATTTGCAAAT+AGG | 0.304721 | 5.3:+71726759 | None:intergenic |
CCTTCATAGATAACACTTTA+GGG | 0.322062 | 5.3:+71728823 | None:intergenic |
ATTGAACAATTTGAAAGATC+TGG | 0.331159 | 5.3:+71726724 | None:intergenic |
GAAACGATACCTGGATCTAT+TGG | 0.343800 | 5.3:+71726414 | None:intergenic |
TCCTTCATAGATAACACTTT+AGG | 0.347362 | 5.3:+71728822 | None:intergenic |
ACAAAAGAAAGTCCTTGTTT+TGG | 0.350532 | 5.3:+71725471 | None:intergenic |
GATTCACTTGAATCTTTAAA+GGG | 0.364770 | 5.3:-71728472 | MS.gene70836:CDS |
TTTCAAATTGTTCAATTCAA+TGG | 0.375625 | 5.3:-71726717 | MS.gene70836:CDS |
TGATTTGTAGGTCATGGATA+TGG | 0.378136 | 5.3:-71727258 | MS.gene70836:intron |
TAATGGCAGATCATGCTTGC+TGG | 0.391824 | 5.3:-71725120 | MS.gene70836:intron |
CCAGATGACAGAGCTCCATT+AGG | 0.399289 | 5.3:-71725096 | MS.gene70836:CDS |
CCTAATGGAGCTCTGTCATC+TGG | 0.403344 | 5.3:+71725096 | None:intergenic |
CGTCCGACATCAAATGGTTC+AGG | 0.413959 | 5.3:+71726495 | None:intergenic |
GAGACTCATCATGTCCCTAA+TGG | 0.414575 | 5.3:+71725081 | None:intergenic |
GTCTCAAGCTTCTGGGAAGC+AGG | 0.416739 | 5.3:-71727767 | MS.gene70836:intron |
GAGAGTGGAAGAGTCGCTTC+AGG | 0.424559 | 5.3:-71727803 | MS.gene70836:CDS |
TGGAGCTAACGATCAGATAA+TGG | 0.425893 | 5.3:-71728859 | MS.gene70836:CDS |
CTTTGTGGAGTTCGAGGTGG+TGG | 0.430151 | 5.3:-71725525 | MS.gene70836:CDS |
CCACATTTGTATGAACTTGA+AGG | 0.431903 | 5.3:-71726799 | MS.gene70836:CDS |
TCTTTAAAGGGGCGTGTGGC+GGG | 0.444564 | 5.3:-71728460 | MS.gene70836:CDS |
TGGTGGAAATGCTGCGGCAC+AGG | 0.446464 | 5.3:-71725508 | MS.gene70836:CDS |
CGATGCTGCTTCTCTAAGTC+TGG | 0.446998 | 5.3:+71728528 | None:intergenic |
CTTTAGCTTTGTGGAGTTCG+AGG | 0.450539 | 5.3:-71725531 | MS.gene70836:intron |
TATTTCGTATATACCTTGCT+TGG | 0.451392 | 5.3:+71727509 | None:intergenic |
TAGTAAATTTGAGAAGGGTT+TGG | 0.464254 | 5.3:-71728733 | MS.gene70836:CDS |
CAGATAACAAGGACAAAGAA+AGG | 0.464921 | 5.3:-71726835 | MS.gene70836:CDS |
AGAGAATGTCTCAAGCTTCT+GGG | 0.466195 | 5.3:-71727774 | MS.gene70836:CDS |
CACATCATACTTTCAACTAC+TGG | 0.472340 | 5.3:-71726438 | MS.gene70836:CDS |
CAGATGACAGAGCTCCATTA+GGG | 0.473664 | 5.3:-71725095 | MS.gene70836:CDS |
TCTCACAAGTGCCTCTACAT+AGG | 0.482662 | 5.3:+71726246 | None:intergenic |
CGATCAGATAATGGAGGCAA+AGG | 0.489213 | 5.3:-71728850 | MS.gene70836:CDS |
AGCAGTTCAGTTAACTCAAA+GGG | 0.490217 | 5.3:-71728114 | MS.gene70836:CDS |
AGTATTCGTCCGACATCAAA+TGG | 0.498614 | 5.3:+71726489 | None:intergenic |
ATGTGGTATTTGCTACTAGT+CGG | 0.499202 | 5.3:-71728899 | MS.gene70836:CDS |
CCCTAAAGTGTTATCTATGA+AGG | 0.501476 | 5.3:-71728823 | MS.gene70836:CDS |
TCTATTCATGTACTTCATGT+TGG | 0.504883 | 5.3:-71725785 | MS.gene70836:CDS |
CACATTTGTATGAACTTGAA+GGG | 0.508236 | 5.3:-71726798 | MS.gene70836:CDS |
ATCTTTAAAGGGGCGTGTGG+CGG | 0.508676 | 5.3:-71728461 | MS.gene70836:CDS |
ACATGAACTTCAAGCATTGA+GGG | 0.508731 | 5.3:-71727234 | MS.gene70836:CDS |
GGACGTGGAACAATTAATGA+AGG | 0.517482 | 5.3:-71727570 | MS.gene70836:CDS |
ATTTGAGAAGGGTTTGGCTG+CGG | 0.519907 | 5.3:-71728727 | MS.gene70836:CDS |
CTGAAGTCGAAGATAATGTC+TGG | 0.522449 | 5.3:+71727193 | None:intergenic |
AATTTGCAAATAGGAGCCTA+AGG | 0.525073 | 5.3:+71726768 | None:intergenic |
CTTGCTAGTAAATTTGAGAA+GGG | 0.525629 | 5.3:-71728738 | MS.gene70836:CDS |
ATGAGGATCAAACTCTGTAA+AGG | 0.527575 | 5.3:-71725758 | MS.gene70836:CDS |
GCGTGAGACTGCTATGTTGT+TGG | 0.528898 | 5.3:-71728790 | MS.gene70836:CDS |
CTTGAAGGGAATGAAACCTT+AGG | 0.529166 | 5.3:-71726784 | MS.gene70836:CDS |
ATATTATTCAAGTTCAATGC+AGG | 0.530369 | 5.3:-71725714 | MS.gene70836:intron |
CCTTGCTAGTAAATTTGAGA+AGG | 0.532672 | 5.3:-71728739 | MS.gene70836:CDS |
ACTACTGGTCCAATAGATCC+AGG | 0.546915 | 5.3:-71726423 | MS.gene70836:intron |
ACTTAGAGAAGCAGCATCGT+TGG | 0.548424 | 5.3:-71728524 | MS.gene70836:CDS |
AACATGAACTTCAAGCATTG+AGG | 0.549149 | 5.3:-71727235 | MS.gene70836:CDS |
GCGTGTGGCGGGAAGAAACA+AGG | 0.553645 | 5.3:-71728449 | MS.gene70836:CDS |
TTCAGTTAACTCAAAGGGAA+GGG | 0.553933 | 5.3:-71728109 | MS.gene70836:CDS |
CCTTCTCAAATTTACTAGCA+AGG | 0.554709 | 5.3:+71728739 | None:intergenic |
TAGTTGAAAGTATGATGTGC+TGG | 0.559524 | 5.3:+71726442 | None:intergenic |
ACATTATCTTCGACTTCAGA+AGG | 0.561300 | 5.3:-71727189 | MS.gene70836:CDS |
CGCTAAGAAACTTGTTGACG+AGG | 0.563688 | 5.3:-71727875 | MS.gene70836:CDS |
TAGCAGTTCAGTTAACTCAA+AGG | 0.564626 | 5.3:-71728115 | MS.gene70836:CDS |
ATGCAGCCATCATGCTTGCA+AGG | 0.568067 | 5.3:-71725419 | MS.gene70836:CDS |
GTGCAGAAATAGATAATGCT+AGG | 0.572393 | 5.3:-71727837 | MS.gene70836:CDS |
AGGGGAACTATTACAAGAGA+AGG | 0.575891 | 5.3:-71728090 | MS.gene70836:CDS |
AGTACATGAATAGATTCAGT+TGG | 0.577590 | 5.3:+71725794 | None:intergenic |
CCTTCAAGTTCATACAAATG+TGG | 0.578259 | 5.3:+71726799 | None:intergenic |
GCCTGCAGTGTCTTCTGATG+TGG | 0.583820 | 5.3:-71728916 | MS.gene70836:CDS |
ATTAATGAAGGAGGTTCAAG+AGG | 0.588663 | 5.3:-71727558 | MS.gene70836:CDS |
GTTCAGTTAACTCAAAGGGA+AGG | 0.590453 | 5.3:-71728110 | MS.gene70836:CDS |
TCAGTTAACTCAAAGGGAAG+GGG | 0.595135 | 5.3:-71728108 | MS.gene70836:CDS |
AAATCTCCTTGCAAGCATGA+TGG | 0.600891 | 5.3:+71725413 | None:intergenic |
GGCTGCTAAGTTGTCTGAAG+AGG | 0.609672 | 5.3:-71728706 | MS.gene70836:intron |
ATTCACTTGAATCTTTAAAG+GGG | 0.617778 | 5.3:-71728471 | MS.gene70836:CDS |
AACAAGGACAAAGAAAGGAG+AGG | 0.619273 | 5.3:-71726830 | MS.gene70836:CDS |
GGTGGTTGTAAGAGATGACG+AGG | 0.623089 | 5.3:-71728980 | None:intergenic |
TGGTGTCGTGTATCATCTGA+TGG | 0.625922 | 5.3:-71726697 | MS.gene70836:CDS |
TAGGTCAGCTGTTCAGAGAG+TGG | 0.628287 | 5.3:-71727818 | MS.gene70836:CDS |
TGAATCTTTAAAGGGGCGTG+TGG | 0.628341 | 5.3:-71728464 | MS.gene70836:CDS |
GCACCTGAACCATTTGATGT+CGG | 0.631127 | 5.3:-71726498 | MS.gene70836:CDS |
AAGAAACAAGGATGATGTCG+AGG | 0.633966 | 5.3:-71728437 | MS.gene70836:CDS |
ACCACATCAGAAGACACTGC+AGG | 0.635392 | 5.3:+71728915 | None:intergenic |
TAAAGTGTTATCTATGAAGG+AGG | 0.636468 | 5.3:-71728820 | MS.gene70836:CDS |
TAGCTTTGTGGAGTTCGAGG+TGG | 0.637575 | 5.3:-71725528 | MS.gene70836:CDS |
AATGCTGCATCAGCCAAGCA+AGG | 0.639243 | 5.3:-71727522 | MS.gene70836:intron |
TCTGGAGCATTATCAGAGCA+AGG | 0.648849 | 5.3:+71726742 | None:intergenic |
TGTCGAGGATGCTATTGCTA+TGG | 0.654260 | 5.3:-71728422 | MS.gene70836:intron |
GAACTGAGAGACGATTATGC+TGG | 0.654568 | 5.3:+71728766 | None:intergenic |
GTAGTTGTAACACAAATGAG+TGG | 0.656424 | 5.3:-71725827 | MS.gene70836:CDS |
TCGAGGTGGTGGAAATGCTG+CGG | 0.659947 | 5.3:-71725514 | MS.gene70836:CDS |
TTATCTTCGACTTCAGAAGG+AGG | 0.660621 | 5.3:-71727186 | MS.gene70836:intron |
ACTATTACAAGAGAAGGCAG+AGG | 0.660927 | 5.3:-71728084 | MS.gene70836:CDS |
CGTGGAACAATTAATGAAGG+AGG | 0.670679 | 5.3:-71727567 | MS.gene70836:CDS |
TGGTTTGGGAACCTATGTAG+AGG | 0.673790 | 5.3:-71726257 | MS.gene70836:CDS |
AGCTAACGATCAGATAATGG+AGG | 0.702876 | 5.3:-71728856 | MS.gene70836:CDS |
GTGGTTGTAAGAGATGACGA+GGG | 0.726958 | 5.3:-71728979 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACATAAATATATGTTTATT+AGG | + | chr5.3:71725711-71725730 | None:intergenic | 10.0% |
!!! | TCAAAACTTTTTTAATAAAT+TGG | + | chr5.3:71727992-71728011 | None:intergenic | 10.0% |
!! | TGTTTATATTGAAACTATAA+AGG | - | chr5.3:71727720-71727739 | MS.gene70836:intron | 15.0% |
!!! | TATTCAGTTTTTTTTTTCAT+TGG | + | chr5.3:71726915-71726934 | None:intergenic | 15.0% |
!!! | TTTTGTTTGGATTTTTTTTT+TGG | - | chr5.3:71726446-71726465 | MS.gene70836:CDS | 15.0% |
!! | ACTATTAATGGAAAAATTAG+CGG | + | chr5.3:71728801-71728820 | None:intergenic | 20.0% |
!! | ATGAAAATTTGATTACAAGA+TGG | + | chr5.3:71728095-71728114 | None:intergenic | 20.0% |
!! | CATATAGACTTATTAAAACA+AGG | + | chr5.3:71728054-71728073 | None:intergenic | 20.0% |
!! | CTTCAATTATCAACTATTAA+TGG | + | chr5.3:71728813-71728832 | None:intergenic | 20.0% |
!! | GTCATGTTAAAATATACTTA+GGG | - | chr5.3:71726982-71727001 | MS.gene70836:intron | 20.0% |
!! | TATATGTTTATTAGGAAGAA+AGG | + | chr5.3:71725703-71725722 | None:intergenic | 20.0% |
!! | TCATGTTAAAATATACTTAG+GGG | - | chr5.3:71726983-71727002 | MS.gene70836:intron | 20.0% |
!! | TGTCATGTTAAAATATACTT+AGG | - | chr5.3:71726981-71727000 | MS.gene70836:intron | 20.0% |
!! | TTTCAAATTGTTCAATTCAA+TGG | - | chr5.3:71727338-71727357 | MS.gene70836:intron | 20.0% |
!!! | ACTGTTTGTTTTTTGTATTT+TGG | - | chr5.3:71726679-71726698 | MS.gene70836:CDS | 20.0% |
!!! | ACTTTTTATATTGAAATACG+AGG | + | chr5.3:71728148-71728167 | None:intergenic | 20.0% |
!!! | AGTCTATTTTATTTCTCATT+TGG | - | chr5.3:71727966-71727985 | MS.gene70836:intron | 20.0% |
!!! | ATATTCATTATTTGTTATGC+AGG | + | chr5.3:71728765-71728784 | None:intergenic | 20.0% |
!!! | ATTGATTTTCATTGCTATAA+TGG | - | chr5.3:71728918-71728937 | MS.gene70836:CDS | 20.0% |
!!! | ATTTTTTTTTTGGCTTTGTT+GGG | - | chr5.3:71726456-71726475 | MS.gene70836:CDS | 20.0% |
!!! | CTTGTTTTAATAAGTCTATA+TGG | - | chr5.3:71728052-71728071 | MS.gene70836:intron | 20.0% |
!!! | TGCATTAATGATTAATTTGA+TGG | - | chr5.3:71726372-71726391 | MS.gene70836:intron | 20.0% |
! | AAAGCAATTTAAGCTCAAAT+TGG | + | chr5.3:71727767-71727786 | None:intergenic | 25.0% |
! | AATTTCTTTAAGCACATAAC+TGG | + | chr5.3:71725737-71725756 | None:intergenic | 25.0% |
! | AGATTCACTTGAATCTTTAA+AGG | - | chr5.3:71725582-71725601 | MS.gene70836:intron | 25.0% |
! | ATCAATAAAGAACAACGTAA+AGG | + | chr5.3:71728904-71728923 | None:intergenic | 25.0% |
! | ATTGAACAATTTGAAAGATC+TGG | + | chr5.3:71727334-71727353 | None:intergenic | 25.0% |
! | GATTCACTTGAATCTTTAAA+GGG | - | chr5.3:71725583-71725602 | MS.gene70836:intron | 25.0% |
! | TTAGCTCCAATTCTATAATT+AGG | + | chr5.3:71725185-71725204 | None:intergenic | 25.0% |
!! | AACTTCATCAAGTTATTTCA+AGG | - | chr5.3:71726751-71726770 | MS.gene70836:CDS | 25.0% |
!! | ATATTATTCAAGTTCAATGC+AGG | - | chr5.3:71728341-71728360 | MS.gene70836:intron | 25.0% |
!! | ATTCACTTGAATCTTTAAAG+GGG | - | chr5.3:71725584-71725603 | MS.gene70836:intron | 25.0% |
!! | ATTTAACTTCAATGTTGTGA+AGG | - | chr5.3:71726062-71726081 | MS.gene70836:intron | 25.0% |
!! | ATTTGACATGTTTTATCACA+TGG | + | chr5.3:71726338-71726357 | None:intergenic | 25.0% |
!! | GCAACTGAATAATTTTTGTT+TGG | - | chr5.3:71726433-71726452 | MS.gene70836:CDS | 25.0% |
!! | TTTTATTATTTGCACTCTTC+AGG | - | chr5.3:71725908-71725927 | MS.gene70836:intron | 25.0% |
!!! | ACCTGAAATAAGTTCTTTTT+TGG | + | chr5.3:71727386-71727405 | None:intergenic | 25.0% |
!!! | AGTTCTTTTGGAGATAAAAT+AGG | - | chr5.3:71725658-71725677 | MS.gene70836:intron | 25.0% |
!!! | GATTTTTTTTTTGGCTTTGT+TGG | - | chr5.3:71726455-71726474 | MS.gene70836:CDS | 25.0% |
!!! | TTGATTGTTGATTGATTTGT+AGG | - | chr5.3:71726785-71726804 | MS.gene70836:CDS | 25.0% |
!!! | TTTTTTTTTTGGCTTTGTTG+GGG | - | chr5.3:71726457-71726476 | MS.gene70836:CDS | 25.0% |
AAATATCGAGTAACTCATCA+TGG | + | chr5.3:71727047-71727066 | None:intergenic | 30.0% | |
AATAAGTCTATATGGTTCCA+CGG | - | chr5.3:71728060-71728079 | MS.gene70836:CDS | 30.0% | |
ACGAAATAGTAGTCTCTATT+CGG | - | chr5.3:71726561-71726580 | MS.gene70836:intron | 30.0% | |
AGTACATGAATAGATTCAGT+TGG | + | chr5.3:71728264-71728283 | None:intergenic | 30.0% | |
ATAGTGAATAAACTTGAGGA+TGG | - | chr5.3:71725850-71725869 | MS.gene70836:intron | 30.0% | |
ATGCATAGTGAATAAACTTG+AGG | - | chr5.3:71725846-71725865 | MS.gene70836:intron | 30.0% | |
ATTGATGCTGATATACTACT+AGG | + | chr5.3:71727896-71727915 | None:intergenic | 30.0% | |
CACATTTGTATGAACTTGAA+GGG | - | chr5.3:71727257-71727276 | MS.gene70836:intron | 30.0% | |
CCTTCATAGATAACACTTTA+GGG | + | chr5.3:71725235-71725254 | None:intergenic | 30.0% | |
CGGTTTCCTAATTATAGAAT+TGG | - | chr5.3:71725176-71725195 | MS.gene70836:intron | 30.0% | |
CTTGCTAGTAAATTTGAGAA+GGG | - | chr5.3:71725317-71725336 | MS.gene70836:intron | 30.0% | |
CTTGTACTCTATGAAAATCA+TGG | - | chr5.3:71725790-71725809 | MS.gene70836:CDS | 30.0% | |
GATAAATTTCTCCGATTAAG+TGG | - | chr5.3:71727127-71727146 | MS.gene70836:intron | 30.0% | |
GCCAAAAAAGAACTTATTTC+AGG | - | chr5.3:71727382-71727401 | MS.gene70836:intron | 30.0% | |
TAAAACAAGGTCAACTTAAG+AGG | + | chr5.3:71728041-71728060 | None:intergenic | 30.0% | |
TAATTACAATGTTGCCTTCA+CGG | + | chr5.3:71725760-71725779 | None:intergenic | 30.0% | |
TACTTCATGTTGGAAAAATG+AGG | - | chr5.3:71728280-71728299 | MS.gene70836:intron | 30.0% | |
TAGTAAATTTGAGAAGGGTT+TGG | - | chr5.3:71725322-71725341 | MS.gene70836:intron | 30.0% | |
TATACTCTCAGCATATGTAA+CGG | + | chr5.3:71726136-71726155 | None:intergenic | 30.0% | |
TATTTCGTATATACCTTGCT+TGG | + | chr5.3:71726549-71726568 | None:intergenic | 30.0% | |
TCCTTCATAGATAACACTTT+AGG | + | chr5.3:71725236-71725255 | None:intergenic | 30.0% | |
TCTATTCATGTACTTCATGT+TGG | - | chr5.3:71728270-71728289 | MS.gene70836:intron | 30.0% | |
TGAAAAGCTTGATTAAAGTC+AGG | + | chr5.3:71725488-71725507 | None:intergenic | 30.0% | |
TGCTAACTTATGTTACCTTA+TGG | - | chr5.3:71726027-71726046 | MS.gene70836:intron | 30.0% | |
TTACCTTATGGTATGCTAAA+AGG | - | chr5.3:71726039-71726058 | MS.gene70836:intron | 30.0% | |
TTCAAATTGTCAATGCTTTC+TGG | - | chr5.3:71728367-71728386 | MS.gene70836:intron | 30.0% | |
! | AATCCTTTTAGCATACCATA+AGG | + | chr5.3:71726045-71726064 | None:intergenic | 30.0% |
! | ACAATGCTTTTCAGATAACA+AGG | - | chr5.3:71727209-71727228 | MS.gene70836:CDS | 30.0% |
! | ACTGGCAAATTTTCTTAAAC+AGG | - | chr5.3:71726001-71726020 | MS.gene70836:intron | 30.0% |
! | TAAAGTGTTATCTATGAAGG+AGG | - | chr5.3:71725235-71725254 | MS.gene70836:intron | 30.0% |
! | TAATCAAGCTTTTCATATGC+TGG | - | chr5.3:71725493-71725512 | MS.gene70836:CDS | 30.0% |
!! | AAAGCATTGTGAAGGATAAA+CGG | + | chr5.3:71727199-71727218 | None:intergenic | 30.0% |
!! | ACAAAAGAAAGTCCTTGTTT+TGG | + | chr5.3:71728587-71728606 | None:intergenic | 30.0% |
!! | AGTTTTTCAACTAGAAAGCA+AGG | + | chr5.3:71725383-71725402 | None:intergenic | 30.0% |
!! | TCTTTTGGAGATAAAATAGG+AGG | - | chr5.3:71725661-71725680 | MS.gene70836:intron | 30.0% |
!! | TTATCTGAAAAGCATTGTGA+AGG | + | chr5.3:71727207-71727226 | None:intergenic | 30.0% |
!!! | TCATGTTTTCTTTAGCTTTG+TGG | - | chr5.3:71728515-71728534 | MS.gene70836:CDS | 30.0% |
AATTTGCAAATAGGAGCCTA+AGG | + | chr5.3:71727290-71727309 | None:intergenic | 35.0% | |
ACATTATCTTCGACTTCAGA+AGG | - | chr5.3:71726866-71726885 | MS.gene70836:intron | 35.0% | |
ACTTTATAGTTGCTCACTGT+AGG | - | chr5.3:71728869-71728888 | MS.gene70836:CDS | 35.0% | |
AGCAGTTCAGTTAACTCAAA+GGG | - | chr5.3:71725941-71725960 | MS.gene70836:intron | 35.0% | |
AGTCCATATTCCTATCATTG+AGG | - | chr5.3:71726955-71726974 | MS.gene70836:intron | 35.0% | |
ATGAGGATCAAACTCTGTAA+AGG | - | chr5.3:71728297-71728316 | MS.gene70836:intron | 35.0% | |
ATGCTGATATACTACTAGGA+GGG | + | chr5.3:71727892-71727911 | None:intergenic | 35.0% | |
ATGTAACTGCTCCACTTAAT+CGG | + | chr5.3:71727141-71727160 | None:intergenic | 35.0% | |
ATTAATGAAGGAGGTTCAAG+AGG | - | chr5.3:71726497-71726516 | MS.gene70836:CDS | 35.0% | |
CACATCATACTTTCAACTAC+TGG | - | chr5.3:71727617-71727636 | MS.gene70836:intron | 35.0% | |
CAGAAAATGTTGTCTTCAAC+AGG | + | chr5.3:71727431-71727450 | None:intergenic | 35.0% | |
CAGATAACAAGGACAAAGAA+AGG | - | chr5.3:71727220-71727239 | MS.gene70836:CDS | 35.0% | |
CCACATTTGTATGAACTTGA+AGG | - | chr5.3:71727256-71727275 | MS.gene70836:intron | 35.0% | |
CCTTCTCAAATTTACTAGCA+AGG | + | chr5.3:71725319-71725338 | None:intergenic | 35.0% | |
CCTTGCTAGTAAATTTGAGA+AGG | - | chr5.3:71725316-71725335 | MS.gene70836:intron | 35.0% | |
GCAAGGTTGAATTTGCAAAT+AGG | + | chr5.3:71727299-71727318 | None:intergenic | 35.0% | |
GTAGTTGTAACACAAATGAG+TGG | - | chr5.3:71728228-71728247 | MS.gene70836:intron | 35.0% | |
GTGCAGAAATAGATAATGCT+AGG | - | chr5.3:71726218-71726237 | MS.gene70836:intron | 35.0% | |
TAGCAGTTCAGTTAACTCAA+AGG | - | chr5.3:71725940-71725959 | MS.gene70836:intron | 35.0% | |
TATGTTGAGCATGCAAGTTA+TGG | - | chr5.3:71727460-71727479 | MS.gene70836:intron | 35.0% | |
TCACTCACGACAATAAAAAG+TGG | + | chr5.3:71727105-71727124 | None:intergenic | 35.0% | |
TCATTGGCATGAGATTATAC+AGG | + | chr5.3:71726899-71726918 | None:intergenic | 35.0% | |
TCTTTGAGCAATGTCTTGAA+CGG | - | chr5.3:71727007-71727026 | MS.gene70836:intron | 35.0% | |
TGCTTAAAGAAATTCCGTGA+AGG | - | chr5.3:71725743-71725762 | MS.gene70836:CDS | 35.0% | |
TTCAGTTAACTCAAAGGGAA+GGG | - | chr5.3:71725946-71725965 | MS.gene70836:intron | 35.0% | |
TTCATATGCTGGTGAAATTC+AGG | - | chr5.3:71725504-71725523 | MS.gene70836:CDS | 35.0% | |
! | AACATGAACTTCAAGCATTG+AGG | - | chr5.3:71726820-71726839 | MS.gene70836:CDS | 35.0% |
! | AATGCACTTTTCTCTTTCTC+AGG | - | chr5.3:71727515-71727534 | MS.gene70836:intron | 35.0% |
! | ATGTGGTATTTGCTACTAGT+CGG | - | chr5.3:71725156-71725175 | MS.gene70836:intron | 35.0% |
! | ATTGCTATGGTGAGTTCTTT+TGG | - | chr5.3:71725646-71725665 | MS.gene70836:intron | 35.0% |
! | CCCTAAAGTGTTATCTATGA+AGG | - | chr5.3:71725232-71725251 | MS.gene70836:intron | 35.0% |
! | CCTTCAAGTTCATACAAATG+TGG | + | chr5.3:71727259-71727278 | None:intergenic | 35.0% |
! | GAGAGTATAGATTCATTTGC+AGG | - | chr5.3:71726147-71726166 | MS.gene70836:intron | 35.0% |
! | TACGATGAGTAATGTGCTTT+TGG | - | chr5.3:71728492-71728511 | MS.gene70836:CDS | 35.0% |
! | TAGTTGAAAGTATGATGTGC+TGG | + | chr5.3:71727616-71727635 | None:intergenic | 35.0% |
! | TGATTTGTAGGTCATGGATA+TGG | - | chr5.3:71726797-71726816 | MS.gene70836:CDS | 35.0% |
!! | ACATGAACTTCAAGCATTGA+GGG | - | chr5.3:71726821-71726840 | MS.gene70836:CDS | 35.0% |
!! | GTTGATTGATTTGTAGGTCA+TGG | - | chr5.3:71726791-71726810 | MS.gene70836:CDS | 35.0% |
!!! | CATTGATTTTCTCATCTGAC+TGG | + | chr5.3:71728726-71728745 | None:intergenic | 35.0% |
AAATCTCCTTGCAAGCATGA+TGG | + | chr5.3:71728645-71728664 | None:intergenic | 40.0% | |
AACAAGGACAAAGAAAGGAG+AGG | - | chr5.3:71727225-71727244 | MS.gene70836:CDS | 40.0% | |
AAGAAACAAGGATGATGTCG+AGG | - | chr5.3:71725618-71725637 | MS.gene70836:intron | 40.0% | |
ACTATTACAAGAGAAGGCAG+AGG | - | chr5.3:71725971-71725990 | MS.gene70836:intron | 40.0% | |
AGAAGAAATCCAATTCCACG+TGG | + | chr5.3:71726721-71726740 | None:intergenic | 40.0% | |
AGAGAATGTCTCAAGCTTCT+GGG | - | chr5.3:71726281-71726300 | MS.gene70836:intron | 40.0% | |
AGGGGAACTATTACAAGAGA+AGG | - | chr5.3:71725965-71725984 | MS.gene70836:intron | 40.0% | |
AGTATTCGTCCGACATCAAA+TGG | + | chr5.3:71727569-71727588 | None:intergenic | 40.0% | |
CAATGTCTTGAACGGTAAGA+TGG | - | chr5.3:71727015-71727034 | MS.gene70836:intron | 40.0% | |
CGTGGAACAATTAATGAAGG+AGG | - | chr5.3:71726488-71726507 | MS.gene70836:CDS | 40.0% | |
CTGAAGTCGAAGATAATGTC+TGG | + | chr5.3:71726865-71726884 | None:intergenic | 40.0% | |
CTGCCTCAATGATAGGAATA+TGG | + | chr5.3:71726961-71726980 | None:intergenic | 40.0% | |
CTTGAAGGGAATGAAACCTT+AGG | - | chr5.3:71727271-71727290 | MS.gene70836:intron | 40.0% | |
GAAACGATACCTGGATCTAT+TGG | + | chr5.3:71727644-71727663 | None:intergenic | 40.0% | |
GAAGAAATCCAATTCCACGT+GGG | + | chr5.3:71726720-71726739 | None:intergenic | 40.0% | |
GAAGGCAGAGGTTAAAAAAC+TGG | - | chr5.3:71725983-71726002 | MS.gene70836:intron | 40.0% | |
GATGCTGATATACTACTAGG+AGG | + | chr5.3:71727893-71727912 | None:intergenic | 40.0% | |
GGACGTGGAACAATTAATGA+AGG | - | chr5.3:71726485-71726504 | MS.gene70836:CDS | 40.0% | |
GTTCAGTTAACTCAAAGGGA+AGG | - | chr5.3:71725945-71725964 | MS.gene70836:intron | 40.0% | |
TCAGTTAACTCAAAGGGAAG+GGG | - | chr5.3:71725947-71725966 | MS.gene70836:intron | 40.0% | |
TGACTCAATGAAACGATACC+TGG | + | chr5.3:71727653-71727672 | None:intergenic | 40.0% | |
TGGAGCTAACGATCAGATAA+TGG | - | chr5.3:71725196-71725215 | MS.gene70836:intron | 40.0% | |
TGGCGATACAATGCAAAAAG+AGG | - | chr5.3:71725112-71725131 | MS.gene70836:CDS | 40.0% | |
TTAAGAGGACATGCGAGTTA+CGG | + | chr5.3:71728026-71728045 | None:intergenic | 40.0% | |
TTATCTTCGACTTCAGAAGG+AGG | - | chr5.3:71726869-71726888 | MS.gene70836:intron | 40.0% | |
TTCAGCCATTAACTACGCTA+TGG | + | chr5.3:71726660-71726679 | None:intergenic | 40.0% | |
TTCCTCCATAGCGTAGTTAA+TGG | - | chr5.3:71726652-71726671 | MS.gene70836:intron | 40.0% | |
! | AGCTAACGATCAGATAATGG+AGG | - | chr5.3:71725199-71725218 | MS.gene70836:intron | 40.0% |
! | CTTTTGAATCAGAGCGAGAA+AGG | - | chr5.3:71728612-71728631 | MS.gene70836:intron | 40.0% |
! | GACTGTGTTCGATATTTTGC+AGG | - | chr5.3:71728206-71728225 | MS.gene70836:intron | 40.0% |
!! | AATTGCTTTTATGCAGCTGC+TGG | - | chr5.3:71727778-71727797 | MS.gene70836:CDS | 40.0% |
!!! | CTATTTTGGCAGCCAAAACA+AGG | - | chr5.3:71728572-71728591 | MS.gene70836:intron | 40.0% |
!!! | TTTGGCTTTGTTGGGGTTTT+AGG | - | chr5.3:71726464-71726483 | MS.gene70836:CDS | 40.0% |
!!! | TTTTATGCAGCTGCTGGTTT+GGG | - | chr5.3:71727784-71727803 | MS.gene70836:CDS | 40.0% |
ACTACTGGTCCAATAGATCC+AGG | - | chr5.3:71727632-71727651 | MS.gene70836:intron | 45.0% | |
ACTTAGAGAAGCAGCATCGT+TGG | - | chr5.3:71725531-71725550 | MS.gene70836:intron | 45.0% | |
AGCCATTAACTACGCTATGG+AGG | + | chr5.3:71726657-71726676 | None:intergenic | 45.0% | |
ATGTCTTTCCCACGTGGAAT+TGG | - | chr5.3:71726709-71726728 | MS.gene70836:CDS | 45.0% | |
ATTTGAGAAGGGTTTGGCTG+CGG | - | chr5.3:71725328-71725347 | MS.gene70836:intron | 45.0% | |
CAGATGACAGAGCTCCATTA+GGG | - | chr5.3:71728960-71728979 | MS.gene70836:CDS | 45.0% | |
CATGACACTGCCTCAATGAT+AGG | + | chr5.3:71726968-71726987 | None:intergenic | 45.0% | |
GAACTGAGAGACGATTATGC+TGG | + | chr5.3:71725292-71725311 | None:intergenic | 45.0% | |
GAGAGAATGTCTCAAGCTTC+TGG | - | chr5.3:71726280-71726299 | MS.gene70836:intron | 45.0% | |
GCACCTGAACCATTTGATGT+CGG | - | chr5.3:71727557-71727576 | MS.gene70836:CDS | 45.0% | |
TAATGGCAGATCATGCTTGC+TGG | - | chr5.3:71728935-71728954 | MS.gene70836:CDS | 45.0% | |
TCTCACAAGTGCCTCTACAT+AGG | + | chr5.3:71727812-71727831 | None:intergenic | 45.0% | |
TGTCGAGGATGCTATTGCTA+TGG | - | chr5.3:71725633-71725652 | MS.gene70836:intron | 45.0% | |
! | ACGAGGGTAACTCGTGATTT+TGG | - | chr5.3:71725092-71725111 | MS.gene70836:CDS | 45.0% |
! | TCTGGAGCATTATCAGAGCA+AGG | + | chr5.3:71727316-71727335 | None:intergenic | 45.0% |
! | TGAATCTTTAAAGGGGCGTG+TGG | - | chr5.3:71725591-71725610 | MS.gene70836:intron | 45.0% |
! | TGGTTTGGGAACCTATGTAG+AGG | - | chr5.3:71727798-71727817 | MS.gene70836:CDS | 45.0% |
!! | CGATCAGATAATGGAGGCAA+AGG | - | chr5.3:71725205-71725224 | MS.gene70836:intron | 45.0% |
!! | CGCTAAGAAACTTGTTGACG+AGG | - | chr5.3:71726180-71726199 | MS.gene70836:intron | 45.0% |
!! | CTTTAGCTTTGTGGAGTTCG+AGG | - | chr5.3:71728524-71728543 | MS.gene70836:CDS | 45.0% |
!! | CTTTTATGCAGCTGCTGGTT+TGG | - | chr5.3:71727783-71727802 | MS.gene70836:CDS | 45.0% |
!! | TGGTGTCGTGTATCATCTGA+TGG | - | chr5.3:71727358-71727377 | MS.gene70836:intron | 45.0% |
!!! | TTTGTTGGGGTTTTAGGACG+TGG | - | chr5.3:71726470-71726489 | MS.gene70836:CDS | 45.0% |
!! | ATTCTTAAAAAATAAAAAAA+AGG | + | chr5.3:71725437-71725456 | None:intergenic | 5.0% |
AATGCTGCATCAGCCAAGCA+AGG | - | chr5.3:71726533-71726552 | MS.gene70836:intron | 50.0% | |
ACCACATCAGAAGACACTGC+AGG | + | chr5.3:71725143-71725162 | None:intergenic | 50.0% | |
ATCGACATGTCTTTCCCACG+TGG | - | chr5.3:71726703-71726722 | MS.gene70836:CDS | 50.0% | |
ATGCAGCCATCATGCTTGCA+AGG | - | chr5.3:71728636-71728655 | MS.gene70836:intron | 50.0% | |
CAAGATGGTAGCTATGACCG+TGG | + | chr5.3:71728080-71728099 | None:intergenic | 50.0% | |
CCAGATGACAGAGCTCCATT+AGG | - | chr5.3:71728959-71728978 | MS.gene70836:CDS | 50.0% | |
CCTAATGGAGCTCTGTCATC+TGG | + | chr5.3:71728962-71728981 | None:intergenic | 50.0% | |
CGTCCGACATCAAATGGTTC+AGG | + | chr5.3:71727563-71727582 | None:intergenic | 50.0% | |
GCGTGAGACTGCTATGTTGT+TGG | - | chr5.3:71725265-71725284 | MS.gene70836:intron | 50.0% | |
GGCTGCTAAGTTGTCTGAAG+AGG | - | chr5.3:71725349-71725368 | MS.gene70836:intron | 50.0% | |
TAGGTCAGCTGTTCAGAGAG+TGG | - | chr5.3:71726237-71726256 | MS.gene70836:CDS | 50.0% | |
! | ATCTTTAAAGGGGCGTGTGG+CGG | - | chr5.3:71725594-71725613 | MS.gene70836:intron | 50.0% |
! | CGATGCTGCTTCTCTAAGTC+TGG | + | chr5.3:71725530-71725549 | None:intergenic | 50.0% |
!! | TAGCTTTGTGGAGTTCGAGG+TGG | - | chr5.3:71728527-71728546 | MS.gene70836:CDS | 50.0% |
CTTTGTGGAGTTCGAGGTGG+TGG | - | chr5.3:71728530-71728549 | MS.gene70836:CDS | 55.0% | |
GAGAGTGGAAGAGTCGCTTC+AGG | - | chr5.3:71726252-71726271 | MS.gene70836:CDS | 55.0% | |
GCCTGCAGTGTCTTCTGATG+TGG | - | chr5.3:71725139-71725158 | MS.gene70836:intron | 55.0% | |
! | CTGCGGCACAGGCACTATTT+TGG | - | chr5.3:71728558-71728577 | MS.gene70836:intron | 55.0% |
! | GTCTCAAGCTTCTGGGAAGC+AGG | - | chr5.3:71726288-71726307 | MS.gene70836:intron | 55.0% |
! | TCTTTAAAGGGGCGTGTGGC+GGG | - | chr5.3:71725595-71725614 | MS.gene70836:intron | 55.0% |
!! | TCGAGGTGGTGGAAATGCTG+CGG | - | chr5.3:71728541-71728560 | MS.gene70836:intron | 55.0% |
TGGTGGAAATGCTGCGGCAC+AGG | - | chr5.3:71728547-71728566 | MS.gene70836:intron | 60.0% | |
! | GCGTGTGGCGGGAAGAAACA+AGG | - | chr5.3:71725606-71725625 | MS.gene70836:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 71725089 | 71728988 | 71725089 | ID=MS.gene70836 |
chr5.3 | mRNA | 71725089 | 71728988 | 71725089 | ID=MS.gene70836.t1;Parent=MS.gene70836 |
chr5.3 | exon | 71728707 | 71728988 | 71728707 | ID=MS.gene70836.t1.exon1;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71728707 | 71728988 | 71728707 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71728423 | 71728551 | 71728423 | ID=MS.gene70836.t1.exon2;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71728423 | 71728551 | 71728423 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71728055 | 71728147 | 71728055 | ID=MS.gene70836.t1.exon3;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71728055 | 71728147 | 71728055 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71727768 | 71727908 | 71727768 | ID=MS.gene70836.t1.exon4;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71727768 | 71727908 | 71727768 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71727523 | 71727591 | 71727523 | ID=MS.gene70836.t1.exon5;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71727523 | 71727591 | 71727523 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71727187 | 71727270 | 71727187 | ID=MS.gene70836.t1.exon6;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71727187 | 71727270 | 71727187 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71726674 | 71726854 | 71726674 | ID=MS.gene70836.t1.exon7;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71726674 | 71726854 | 71726674 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71726424 | 71726540 | 71726424 | ID=MS.gene70836.t1.exon8;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71726424 | 71726540 | 71726424 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71726225 | 71726283 | 71726225 | ID=MS.gene70836.t1.exon9;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71726225 | 71726283 | 71726225 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71725715 | 71725849 | 71725715 | ID=MS.gene70836.t1.exon10;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71725715 | 71725849 | 71725715 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71725398 | 71725547 | 71725398 | ID=MS.gene70836.t1.exon11;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71725398 | 71725547 | 71725398 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
chr5.3 | exon | 71725089 | 71725133 | 71725089 | ID=MS.gene70836.t1.exon12;Parent=MS.gene70836.t1 |
chr5.3 | CDS | 71725089 | 71725133 | 71725089 | ID=cds.MS.gene70836.t1;Parent=MS.gene70836.t1 |
Gene Sequence |
Protein sequence |