Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70869.t1 | AET00208.2 | 94.4 | 871 | 38 | 1 | 1 | 860 | 1 | 871 | 0.00E+00 | 1552.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70869.t1 | Q8RWQ4 | 67.7 | 880 | 254 | 10 | 1 | 860 | 1 | 870 | 6.3e-306 | 1051.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70869.t1 | G7K336 | 94.4 | 871 | 38 | 1 | 1 | 860 | 1 | 871 | 0.0e+00 | 1552.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052609 | MS.gene70869 | 0.813252 | 2.81E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene70869 | 0.807876 | 4.08E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene70869 | 0.803151 | 4.00E-49 | -1.69E-46 |
| MS.gene056285 | MS.gene70869 | 0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene70869 | -0.812729 | 3.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70869.t1 | MTR_5g089490 | 97.359 | 871 | 12 | 1 | 1 | 860 | 1 | 871 | 0.0 | 1745 |
| MS.gene70869.t1 | MTR_5g089490 | 96.364 | 880 | 12 | 2 | 1 | 860 | 1 | 880 | 0.0 | 1738 |
| MS.gene70869.t1 | MTR_3g100580 | 44.536 | 851 | 376 | 14 | 12 | 847 | 31 | 800 | 0.0 | 575 |
| MS.gene70869.t1 | MTR_5g065960 | 66.201 | 358 | 109 | 2 | 17 | 363 | 36 | 392 | 3.46e-154 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70869.t1 | AT5G19390 | 68.969 | 883 | 238 | 12 | 1 | 860 | 1 | 870 | 0.0 | 1080 |
| MS.gene70869.t1 | AT5G19390 | 68.969 | 883 | 238 | 12 | 1 | 860 | 1 | 870 | 0.0 | 1080 |
| MS.gene70869.t1 | AT5G19390 | 68.856 | 822 | 222 | 10 | 1 | 801 | 1 | 809 | 0.0 | 994 |
| MS.gene70869.t1 | AT5G12150 | 61.960 | 857 | 267 | 11 | 1 | 843 | 1 | 812 | 0.0 | 976 |
| MS.gene70869.t1 | AT5G12150 | 65.166 | 755 | 237 | 7 | 1 | 743 | 1 | 741 | 0.0 | 926 |
| MS.gene70869.t1 | AT5G19390 | 70.360 | 722 | 182 | 8 | 1 | 703 | 1 | 709 | 0.0 | 907 |
| MS.gene70869.t1 | AT4G24580 | 47.692 | 845 | 375 | 19 | 12 | 839 | 54 | 848 | 0.0 | 622 |
| MS.gene70869.t1 | AT4G24580 | 47.692 | 845 | 375 | 19 | 12 | 839 | 54 | 848 | 0.0 | 622 |
| MS.gene70869.t1 | AT4G24580 | 54.193 | 644 | 263 | 12 | 12 | 640 | 54 | 680 | 0.0 | 575 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTGGTGTTGTTGATTC+TGG | 0.190473 | 5.3:+72146042 | MS.gene70869:CDS |
| CATAACCTTGATTTGAACTA+TGG | 0.247874 | 5.3:+72146505 | MS.gene70869:CDS |
| AATATTGATGTAAAAGAAAA+TGG | 0.272680 | 5.3:+72143029 | MS.gene70869:CDS |
| GTGGAATCAGTTGATTCTTC+TGG | 0.281193 | 5.3:+72144490 | MS.gene70869:CDS |
| GTCTTTGCTGATTAAGTTGA+TGG | 0.283757 | 5.3:-72145275 | None:intergenic |
| TCAATTTACAGCATGTTCTA+AGG | 0.288440 | 5.3:+72141028 | MS.gene70869:intron |
| GTACTAAGCGGTCAACGTTC+TGG | 0.297047 | 5.3:+72143912 | MS.gene70869:CDS |
| CTCACGGTTGAGGAAGATTC+TGG | 0.297089 | 5.3:-72145347 | None:intergenic |
| GGTATTGACTTAAACAATTC+AGG | 0.298761 | 5.3:+72138886 | MS.gene70869:CDS |
| CTTCTCATTCTAACATGAAT+AGG | 0.304870 | 5.3:+72142640 | MS.gene70869:CDS |
| TTCTGCTGTTGCTGCTTGCA+TGG | 0.325403 | 5.3:+72142671 | MS.gene70869:CDS |
| TGAATCCATCCCACGTGAAT+TGG | 0.336829 | 5.3:-72145088 | None:intergenic |
| CTCTGTAACAAACGTCGATT+TGG | 0.339972 | 5.3:-72142514 | None:intergenic |
| CTAGGACTCGAGTCTATAAA+TGG | 0.340472 | 5.3:-72145976 | None:intergenic |
| ACCAAGTGCTGCCCTTGTTA+TGG | 0.347787 | 5.3:+72139140 | MS.gene70869:CDS |
| TTCAAATCTGAATGCTGTTC+CGG | 0.349010 | 5.3:+72143673 | MS.gene70869:CDS |
| CTTAGGTTTCTAGAGAAGTA+TGG | 0.349727 | 5.3:+72139524 | MS.gene70869:CDS |
| CCTGTGATTGAGGCGCAATC+AGG | 0.362010 | 5.3:+72143842 | MS.gene70869:CDS |
| GCTCAGTGCCTTCCACTTCA+AGG | 0.363371 | 5.3:+72146064 | MS.gene70869:CDS |
| GTGCCCTTGCAGCAGGCATT+TGG | 0.364013 | 5.3:+72143596 | MS.gene70869:intron |
| AACTCGAGAATCAGCTGAAA+TGG | 0.367018 | 5.3:-72142970 | None:intergenic |
| ATTGAGGCGCAATCAGGTTC+TGG | 0.368082 | 5.3:+72143848 | MS.gene70869:CDS |
| TACTAAGCGGTCAACGTTCT+GGG | 0.371361 | 5.3:+72143913 | MS.gene70869:CDS |
| CTCTTACGGCCTCTGTTAGC+TGG | 0.375756 | 5.3:+72142702 | MS.gene70869:CDS |
| GTTGGTTTGAGCATGTCTTC+AGG | 0.383362 | 5.3:+72145057 | MS.gene70869:CDS |
| GCATGGCACCCTTGCTCTTA+CGG | 0.389496 | 5.3:+72142688 | MS.gene70869:CDS |
| GGAAAGGCGTTCGCAGTTGA+TGG | 0.389567 | 5.3:+72146474 | MS.gene70869:CDS |
| CCAAGTGCTGCCCTTGTTAT+GGG | 0.390257 | 5.3:+72139141 | MS.gene70869:CDS |
| CAAGCGTCCAGTCAAGTCTT+TGG | 0.395066 | 5.3:+72139433 | MS.gene70869:CDS |
| CAGCACTTGGTGCTTGTGCA+AGG | 0.396878 | 5.3:-72139128 | None:intergenic |
| TTCATGCTGTACTGCTTTGT+TGG | 0.398817 | 5.3:+72141077 | MS.gene70869:CDS |
| CCAGTCAAGTCTTTGGTTGT+TGG | 0.403002 | 5.3:+72139440 | MS.gene70869:CDS |
| AGCTATTATTACCACTTTGT+TGG | 0.403774 | 5.3:+72142812 | MS.gene70869:CDS |
| TTCCGAAGTCTCCGCCTTAA+GGG | 0.407357 | 5.3:-72139070 | None:intergenic |
| TTTCAACAGGAGAGTGTGTT+GGG | 0.412428 | 5.3:+72145883 | MS.gene70869:intron |
| TGCAATGCGCTGTGCTGTAT+TGG | 0.415539 | 5.3:+72142477 | MS.gene70869:CDS |
| ATAACGAGTACGAACATTGA+TGG | 0.425634 | 5.3:-72139215 | None:intergenic |
| TTTCAGGTGACAGAATATAA+TGG | 0.431584 | 5.3:+72146388 | MS.gene70869:intron |
| GCTCGACCATCACGCCCGTC+TGG | 0.437464 | 5.3:-72139042 | None:intergenic |
| CTTAGAGCTGCATTGGAAGT+TGG | 0.440680 | 5.3:+72145039 | MS.gene70869:CDS |
| ATCACAGGCAAATGGTTGCC+AGG | 0.441210 | 5.3:-72143827 | None:intergenic |
| TATACTCACACGCACATCAT+TGG | 0.442123 | 5.3:+72138321 | MS.gene70869:CDS |
| CAAGTATTGGCTTCTGGTAA+TGG | 0.443179 | 5.3:+72145931 | MS.gene70869:CDS |
| CTTCCCCACCTCTCTGTGGA+AGG | 0.445993 | 5.3:-72138846 | None:intergenic |
| AGCACTTGGTGCTTGTGCAA+GGG | 0.446894 | 5.3:-72139127 | None:intergenic |
| CACAGAATCTTATCGTTCCA+TGG | 0.447762 | 5.3:+72143781 | MS.gene70869:CDS |
| AAAGGACAAGTATTGGCTTC+TGG | 0.450625 | 5.3:+72145925 | MS.gene70869:CDS |
| GGAGGAGATGATTCTGATGT+TGG | 0.452355 | 5.3:+72143617 | MS.gene70869:CDS |
| GTACAGCATGAAGCTGGAAC+TGG | 0.454511 | 5.3:-72141066 | None:intergenic |
| TCCTCAGACAGATGGTTATC+CGG | 0.455571 | 5.3:-72143692 | None:intergenic |
| AGTGAAAGTAGTGGTTATGC+TGG | 0.462074 | 5.3:+72143125 | MS.gene70869:CDS |
| TCTTCAAGTGCTAGCAGAAT+CGG | 0.462426 | 5.3:-72139467 | None:intergenic |
| CAGCAAAGACAGCATCACTA+TGG | 0.464164 | 5.3:+72145288 | MS.gene70869:CDS |
| GTATTAGAAGCCCCAGGTCT+AGG | 0.464658 | 5.3:-72137058 | None:intergenic |
| ATGCTGTACTGCTTTGTTGG+AGG | 0.467931 | 5.3:+72141080 | MS.gene70869:CDS |
| CAACCATTTGCCTGTGATTG+AGG | 0.469066 | 5.3:+72143832 | MS.gene70869:CDS |
| AGCGGTCAACGTTCTGGGGC+AGG | 0.469725 | 5.3:+72143918 | MS.gene70869:CDS |
| TTTGCAGGAACTAAAGTTGA+AGG | 0.469978 | 5.3:+72140481 | MS.gene70869:intron |
| GTAAACCATGTCTTGGGAAG+TGG | 0.470066 | 5.3:-72146533 | None:intergenic |
| CCCTTGCAGCAGGCATTTGG+AGG | 0.472401 | 5.3:+72143599 | MS.gene70869:intron |
| GGTTCTGGAAAGCAAACAAC+TGG | 0.487188 | 5.3:+72143863 | MS.gene70869:CDS |
| TTGGTTTGTAAACCATGTCT+TGG | 0.488897 | 5.3:-72146540 | None:intergenic |
| AGCTTTGCATGAACGACGCT+TGG | 0.491120 | 5.3:+72144876 | MS.gene70869:CDS |
| TGTTGTTGGTGACTGTGTTA+AGG | 0.491134 | 5.3:+72140929 | MS.gene70869:CDS |
| TACAAGCAAGCTTAGAGAGA+AGG | 0.491160 | 5.3:+72144848 | MS.gene70869:CDS |
| TCTGTGGAAGGCAACACAAT+TGG | 0.491752 | 5.3:-72143764 | None:intergenic |
| GATTTCCAATTCACGTGGGA+TGG | 0.491996 | 5.3:+72145083 | MS.gene70869:CDS |
| TGGCTTCTGGTAATGGTAGT+AGG | 0.494599 | 5.3:+72145938 | MS.gene70869:CDS |
| AACAAACGTCGATTTGGCTC+TGG | 0.496235 | 5.3:-72142508 | None:intergenic |
| TACCTCTGCTGCCCTTGAAG+TGG | 0.499455 | 5.3:-72146076 | None:intergenic |
| TAGACCTGGGGCTTCTAATA+CGG | 0.500762 | 5.3:+72137060 | MS.gene70869:CDS |
| TATTATTACCACTTTGTTGG+AGG | 0.500765 | 5.3:+72142815 | MS.gene70869:CDS |
| GAGGGATCTTAGAGCTGCAT+TGG | 0.502833 | 5.3:+72145032 | MS.gene70869:CDS |
| GAGGAAGATGCGCATGTTGT+TGG | 0.504636 | 5.3:+72140915 | MS.gene70869:CDS |
| GATACAACTGATTCTATTGA+CGG | 0.505893 | 5.3:+72139186 | MS.gene70869:CDS |
| AAGTGATCTTTATGATTACA+AGG | 0.507158 | 5.3:+72143148 | MS.gene70869:CDS |
| GGAAATGTCTGCTTCTTTAG+CGG | 0.508657 | 5.3:+72137024 | None:intergenic |
| TTTCATGATTACAGTATGCA+AGG | 0.509536 | 5.3:-72145496 | None:intergenic |
| GAGGAAGATTCTGGGCATGC+TGG | 0.510088 | 5.3:-72145338 | None:intergenic |
| CCTGATTGCGCCTCAATCAC+AGG | 0.511378 | 5.3:-72143842 | None:intergenic |
| CAACTCCATGATGGTGATGT+TGG | 0.512334 | 5.3:-72146559 | None:intergenic |
| TGGTCGAGCATTCACCCTTA+AGG | 0.512615 | 5.3:+72139056 | MS.gene70869:CDS |
| CTCAGTGCCTTCCACTTCAA+GGG | 0.514840 | 5.3:+72146065 | MS.gene70869:CDS |
| AATAGCTTGAGCGTTATTTG+CGG | 0.520779 | 5.3:-72142796 | None:intergenic |
| GCGCCTCAATCACAGGCAAA+TGG | 0.526276 | 5.3:-72143835 | None:intergenic |
| AAAGGTTGAGTTTGATGCAG+AGG | 0.527372 | 5.3:+72140896 | MS.gene70869:CDS |
| AAATATCAAAGGACAAGTAT+TGG | 0.527848 | 5.3:+72145918 | MS.gene70869:CDS |
| AAAGCAGTACAGCATGAAGC+TGG | 0.529674 | 5.3:-72141072 | None:intergenic |
| TTTACAAGAAATTGATCGCA+AGG | 0.529791 | 5.3:+72142441 | MS.gene70869:intron |
| ATTTCAACAGGAGAGTGTGT+TGG | 0.532027 | 5.3:+72145882 | MS.gene70869:intron |
| TTGCTGAAGCTGATGTGGCT+AGG | 0.533496 | 5.3:+72145226 | MS.gene70869:CDS |
| TTCCATTGTGTCCCATAACA+AGG | 0.533878 | 5.3:-72139152 | None:intergenic |
| TAGAACCATAGTTCAAATCA+AGG | 0.535006 | 5.3:-72146510 | None:intergenic |
| AAATTGATCGCAAGGAGGCT+AGG | 0.535648 | 5.3:+72142449 | MS.gene70869:CDS |
| TCACGGTTGAGGAAGATTCT+GGG | 0.537133 | 5.3:-72145346 | None:intergenic |
| TAGGAATAGGATGGAAGTCA+TGG | 0.541281 | 5.3:+72138284 | MS.gene70869:intron |
| TGTTAGCATACTCACGGTTG+AGG | 0.542591 | 5.3:-72145357 | None:intergenic |
| AGAACAGTTGCAAGCTGAGA+GGG | 0.542656 | 5.3:+72145014 | MS.gene70869:CDS |
| GAAGCTGGAACTGGAGAGGA+AGG | 0.543717 | 5.3:-72141057 | None:intergenic |
| AGAGTGTGTTGGGCTCTGAT+TGG | 0.544640 | 5.3:+72145893 | MS.gene70869:CDS |
| GTGGAAGGCAACACAATTGG+TGG | 0.544872 | 5.3:-72143761 | None:intergenic |
| AGTTGATTCTTCTGGAGAAG+AGG | 0.545797 | 5.3:+72144498 | MS.gene70869:CDS |
| CTAGCACTTGAAGATATTGA+CGG | 0.546652 | 5.3:+72139476 | MS.gene70869:CDS |
| CTCTACTAGTAATCATGCTA+AGG | 0.546718 | 5.3:+72143643 | MS.gene70869:CDS |
| CCCATAACAAGGGCAGCACT+TGG | 0.547020 | 5.3:-72139141 | None:intergenic |
| TATGGTTCAGTTACAGATGT+AGG | 0.547273 | 5.3:+72145306 | MS.gene70869:CDS |
| CCAACAACCAAAGACTTGAC+TGG | 0.548043 | 5.3:-72139440 | None:intergenic |
| TAACAGAGGCCGTAAGAGCA+AGG | 0.552011 | 5.3:-72142697 | None:intergenic |
| TCCACTGACGGTGACTTCCT+CGG | 0.552232 | 5.3:-72144472 | None:intergenic |
| ACAGAATCTTATCGTTCCAT+GGG | 0.553032 | 5.3:+72143782 | MS.gene70869:CDS |
| CCTTTGGAAGATATGAAAAG+TGG | 0.553169 | 5.3:-72138078 | None:intergenic |
| TGGTTTGTAAACCATGTCTT+GGG | 0.553794 | 5.3:-72146539 | None:intergenic |
| AGACATGCTTGTCGATGCCT+CGG | 0.556250 | 5.3:-72146013 | None:intergenic |
| TTCTACCACTTCCCAAGACA+TGG | 0.556457 | 5.3:+72146528 | MS.gene70869:CDS |
| TCTATAAATGGCTTCCGAGA+TGG | 0.557311 | 5.3:-72145964 | None:intergenic |
| CAATTTACAGCATGTTCTAA+GGG | 0.558033 | 5.3:+72141029 | MS.gene70869:intron |
| GCCGAGGAAGTCACCGTCAG+TGG | 0.558441 | 5.3:+72144471 | MS.gene70869:intron |
| TTGCATACTGTAATCATGAA+AGG | 0.559093 | 5.3:+72145498 | MS.gene70869:CDS |
| GGATAAAAGCAAGCAAAGAA+AGG | 0.563479 | 5.3:+72143712 | MS.gene70869:CDS |
| GTTATTTGCGGCATTAGCAG+CGG | 0.565544 | 5.3:-72142784 | None:intergenic |
| TTCATGATTACAGTATGCAA+GGG | 0.566846 | 5.3:-72145495 | None:intergenic |
| TTATTTCCAGACGGGCGTGA+TGG | 0.567936 | 5.3:+72139036 | MS.gene70869:CDS |
| TTACAGTATTATTTCCAGAC+GGG | 0.567974 | 5.3:+72139028 | MS.gene70869:CDS |
| ACGTCGATTTGGCTCTGGAA+AGG | 0.569516 | 5.3:-72142503 | None:intergenic |
| TTCACGTGGGATGGATTCAA+AGG | 0.570384 | 5.3:+72145092 | MS.gene70869:CDS |
| AACAGAGGCCGTAAGAGCAA+GGG | 0.572474 | 5.3:-72142696 | None:intergenic |
| TTCCACTTCAAGGGCAGCAG+AGG | 0.574764 | 5.3:+72146074 | MS.gene70869:CDS |
| CTTACAGTATTATTTCCAGA+CGG | 0.575678 | 5.3:+72139027 | MS.gene70869:CDS |
| GTACCCTTCCACAGAGAGGT+GGG | 0.576031 | 5.3:+72138842 | MS.gene70869:CDS |
| ATTCTCGAGTTGAAAACAGC+GGG | 0.576151 | 5.3:+72142982 | MS.gene70869:CDS |
| CAAATCGACGTTTGTTACAG+AGG | 0.577379 | 5.3:+72142515 | MS.gene70869:CDS |
| TGCACTTGCTGAAGCTGATG+TGG | 0.578506 | 5.3:+72145221 | MS.gene70869:CDS |
| TTTGCAGGCTTGCTATTCAG+AGG | 0.579595 | 5.3:+72144674 | MS.gene70869:intron |
| AAAGACAAAGGCTGAGCTAG+AGG | 0.580232 | 5.3:+72145194 | MS.gene70869:intron |
| ACAAACCAACATCACCATCA+TGG | 0.581238 | 5.3:+72146554 | MS.gene70869:CDS |
| GTTAGCTGGAGAATGTGAGC+TGG | 0.582566 | 5.3:+72142716 | MS.gene70869:CDS |
| TTTACTTCCCCACCTCTCTG+TGG | 0.584183 | 5.3:-72138850 | None:intergenic |
| TGAAGATAAAATCTCACCCA+TGG | 0.584703 | 5.3:-72143798 | None:intergenic |
| CTTAGCATGATTACTAGTAG+AGG | 0.585994 | 5.3:-72143642 | None:intergenic |
| ATACAACTGATTCTATTGAC+GGG | 0.586215 | 5.3:+72139187 | MS.gene70869:CDS |
| CTCATACTCCTCCAACAAAG+TGG | 0.587009 | 5.3:-72142823 | None:intergenic |
| TTCCCCACCTCTCTGTGGAA+GGG | 0.587561 | 5.3:-72138845 | None:intergenic |
| TCACAGGCAAATGGTTGCCA+GGG | 0.588285 | 5.3:-72143826 | None:intergenic |
| TTTGCAACATAGAATTGCAA+AGG | 0.589536 | 5.3:+72144717 | MS.gene70869:CDS |
| TGTGGCTAGGTTGAAGCAAA+AGG | 0.591297 | 5.3:+72145239 | MS.gene70869:CDS |
| GAACGATAAGATTCTGTGGA+AGG | 0.591702 | 5.3:-72143776 | None:intergenic |
| GAGGATGAATTTGATGTTAG+CGG | 0.591779 | 5.3:+72142738 | MS.gene70869:CDS |
| TGGGGAAGTAAACATGACAC+TGG | 0.595476 | 5.3:+72138861 | MS.gene70869:CDS |
| ATGGTAGTAGGCAGCCATCT+CGG | 0.596802 | 5.3:+72145950 | MS.gene70869:CDS |
| GCAACATAGAATTGCAAAGG+AGG | 0.599914 | 5.3:+72144720 | MS.gene70869:CDS |
| AAGAACAGTTGCAAGCTGAG+AGG | 0.599976 | 5.3:+72145013 | MS.gene70869:CDS |
| CTTTGGAAGATATGAAAAGT+GGG | 0.609808 | 5.3:-72138077 | None:intergenic |
| TTGGCTGGTCAACTCCATGA+TGG | 0.613547 | 5.3:-72146568 | None:intergenic |
| GGACAGATTTCCAATTCACG+TGG | 0.614074 | 5.3:+72145078 | MS.gene70869:CDS |
| GCGGCAGTCTGCAGACGTTG+AGG | 0.615573 | 5.3:+72140510 | MS.gene70869:CDS |
| AGTACCCTTCCACAGAGAGG+TGG | 0.615623 | 5.3:+72138841 | MS.gene70869:CDS |
| GAATCAACTGATTCCACTGA+CGG | 0.615876 | 5.3:-72144484 | None:intergenic |
| TCTGATTGGAGAAATATCAA+AGG | 0.616260 | 5.3:+72145907 | MS.gene70869:CDS |
| TTGACTTAAACAATTCAGGA+AGG | 0.617215 | 5.3:+72138890 | MS.gene70869:CDS |
| CACTTGAAGATATTGACGGA+GGG | 0.617722 | 5.3:+72139480 | MS.gene70869:CDS |
| TACCCTTCCACAGAGAGGTG+GGG | 0.621352 | 5.3:+72138843 | MS.gene70869:CDS |
| TAGGTTGAAGCAAAAGGTTG+CGG | 0.628750 | 5.3:+72145245 | MS.gene70869:CDS |
| TCTGCTGCCCTTGAAGTGGA+AGG | 0.630019 | 5.3:-72146072 | None:intergenic |
| CATGGAACGATAAGATTCTG+TGG | 0.631344 | 5.3:-72143780 | None:intergenic |
| AGCATGTCTGTAGATGAGCT+TGG | 0.639210 | 5.3:+72146027 | MS.gene70869:CDS |
| GTAATCATGAAAGGAAACAA+AGG | 0.640261 | 5.3:+72145507 | MS.gene70869:CDS |
| GGAAAATTAAGTGAAAGTAG+TGG | 0.642200 | 5.3:+72143116 | MS.gene70869:CDS |
| GCATGAAGCTGGAACTGGAG+AGG | 0.644232 | 5.3:-72141061 | None:intergenic |
| GTTCATATTCTTGAACTCTG+CGG | 0.646798 | 5.3:-72140540 | None:intergenic |
| ACAACTGGTAAAGCTAGTAG+TGG | 0.647708 | 5.3:+72143878 | MS.gene70869:CDS |
| TCCGGATAACCATCTGTCTG+AGG | 0.648641 | 5.3:+72143691 | MS.gene70869:CDS |
| ACTAAGCGGTCAACGTTCTG+GGG | 0.652437 | 5.3:+72143914 | MS.gene70869:CDS |
| GCCCTTGTTATGGGACACAA+TGG | 0.652712 | 5.3:+72139150 | MS.gene70869:CDS |
| TCCATTGTGTCCCATAACAA+GGG | 0.660482 | 5.3:-72139151 | None:intergenic |
| AATGTTGAAGATGCTACAGA+CGG | 0.662960 | 5.3:-72146418 | None:intergenic |
| CTAAAGTTGAAGGAATATTG+CGG | 0.670990 | 5.3:+72140491 | MS.gene70869:CDS |
| AGCTGGAGAATGTGAGCTGG+AGG | 0.672550 | 5.3:+72142719 | MS.gene70869:CDS |
| GCACTTGAAGATATTGACGG+AGG | 0.677854 | 5.3:+72139479 | MS.gene70869:CDS |
| TCACATTCTCCAGCTAACAG+AGG | 0.688971 | 5.3:-72142711 | None:intergenic |
| GGGGAAGTAAACATGACACT+GGG | 0.689033 | 5.3:+72138862 | MS.gene70869:CDS |
| GACAGATTTCCAATTCACGT+GGG | 0.690788 | 5.3:+72145079 | MS.gene70869:CDS |
| ACAAGAAATTGATCGCAAGG+AGG | 0.690891 | 5.3:+72142444 | MS.gene70869:intron |
| TGAAAGGAAACAAAGGACTG+AGG | 0.696082 | 5.3:+72145514 | MS.gene70869:CDS |
| TAGAGTACCCTTCCACAGAG+AGG | 0.699468 | 5.3:+72138838 | MS.gene70869:intron |
| GAAGTAAACATGACACTGGG+CGG | 0.701017 | 5.3:+72138865 | MS.gene70869:CDS |
| AGAGTTCAAGAATATGAACA+AGG | 0.711542 | 5.3:+72140544 | MS.gene70869:CDS |
| CATACCGTATTAGAAGCCCC+AGG | 0.715794 | 5.3:-72137064 | None:intergenic |
| GTACAAGCTTTAGTACTAAG+CGG | 0.720132 | 5.3:+72143900 | MS.gene70869:CDS |
| GATTCTCGAGTTGAAAACAG+CGG | 0.735165 | 5.3:+72142981 | MS.gene70869:CDS |
| GATGCTGATCGTGTTCACAG+TGG | 0.764138 | 5.3:+72143095 | MS.gene70869:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72137028 | 72146582 | 72137028 | ID=MS.gene70869 |
| chr5.3 | mRNA | 72137028 | 72146582 | 72137028 | ID=MS.gene70869.t1;Parent=MS.gene70869 |
| chr5.3 | exon | 72137028 | 72137081 | 72137028 | ID=MS.gene70869.t1.exon1;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72137028 | 72137081 | 72137028 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72138063 | 72138099 | 72138063 | ID=MS.gene70869.t1.exon2;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72138063 | 72138099 | 72138063 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72138287 | 72138363 | 72138287 | ID=MS.gene70869.t1.exon3;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72138287 | 72138363 | 72138287 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72138841 | 72138911 | 72138841 | ID=MS.gene70869.t1.exon4;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72138841 | 72138911 | 72138841 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72138999 | 72139077 | 72138999 | ID=MS.gene70869.t1.exon5;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72138999 | 72139077 | 72138999 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72139111 | 72139222 | 72139111 | ID=MS.gene70869.t1.exon6;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72139111 | 72139222 | 72139111 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72139426 | 72139545 | 72139426 | ID=MS.gene70869.t1.exon7;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72139426 | 72139545 | 72139426 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72140488 | 72140565 | 72140488 | ID=MS.gene70869.t1.exon8;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72140488 | 72140565 | 72140488 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72140895 | 72140950 | 72140895 | ID=MS.gene70869.t1.exon9;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72140895 | 72140950 | 72140895 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72141039 | 72141108 | 72141039 | ID=MS.gene70869.t1.exon10;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72141039 | 72141108 | 72141039 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72142449 | 72142536 | 72142449 | ID=MS.gene70869.t1.exon11;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72142449 | 72142536 | 72142449 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72142614 | 72142857 | 72142614 | ID=MS.gene70869.t1.exon12;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72142614 | 72142857 | 72142614 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72142948 | 72143169 | 72142948 | ID=MS.gene70869.t1.exon13;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72142948 | 72143169 | 72142948 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72143611 | 72143946 | 72143611 | ID=MS.gene70869.t1.exon14;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72143611 | 72143946 | 72143611 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72144472 | 72144521 | 72144472 | ID=MS.gene70869.t1.exon15;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72144472 | 72144521 | 72144472 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72144681 | 72144741 | 72144681 | ID=MS.gene70869.t1.exon16;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72144681 | 72144741 | 72144681 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72144829 | 72144912 | 72144829 | ID=MS.gene70869.t1.exon17;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72144829 | 72144912 | 72144829 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72145000 | 72145113 | 72145000 | ID=MS.gene70869.t1.exon18;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72145000 | 72145113 | 72145000 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72145198 | 72145364 | 72145198 | ID=MS.gene70869.t1.exon19;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72145198 | 72145364 | 72145198 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72145466 | 72145535 | 72145466 | ID=MS.gene70869.t1.exon20;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72145466 | 72145535 | 72145466 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72145892 | 72146095 | 72145892 | ID=MS.gene70869.t1.exon21;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72145892 | 72146095 | 72145892 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| chr5.3 | exon | 72146394 | 72146582 | 72146394 | ID=MS.gene70869.t1.exon22;Parent=MS.gene70869.t1 |
| chr5.3 | CDS | 72146394 | 72146582 | 72146394 | ID=cds.MS.gene70869.t1;Parent=MS.gene70869.t1 |
| Gene Sequence |
| Protein sequence |
