Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71143.t1 | XP_003595736.1 | 94.7 | 414 | 21 | 1 | 1 | 414 | 1 | 413 | 2.50E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71143.t1 | O48716 | 36.4 | 327 | 193 | 7 | 66 | 382 | 97 | 418 | 9.5e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71143.t1 | G7IGQ9 | 94.7 | 414 | 21 | 1 | 1 | 414 | 1 | 413 | 1.8e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71143 | MS.gene015841 | PPI |
| MS.gene001242 | MS.gene71143 | PPI |
| MS.gene71143 | MS.gene45142 | PPI |
| MS.gene71143 | MS.gene063343 | PPI |
| MS.gene71143 | MS.gene049052 | PPI |
| MS.gene71143 | MS.gene20137 | PPI |
| MS.gene71143 | MS.gene030337 | PPI |
| MS.gene71143 | MS.gene58600 | PPI |
| MS.gene71143 | MS.gene75024 | PPI |
| MS.gene71143 | MS.gene027518 | PPI |
| MS.gene71143 | MS.gene05967 | PPI |
| MS.gene71143 | MS.gene66388 | PPI |
| MS.gene71143 | MS.gene049051 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71143.t1 | MTR_2g060070 | 96.860 | 414 | 12 | 1 | 1 | 414 | 1 | 413 | 0.0 | 820 |
| MS.gene71143.t1 | MTR_1g021590 | 40.517 | 348 | 182 | 10 | 48 | 382 | 96 | 431 | 1.73e-75 | 243 |
| MS.gene71143.t1 | MTR_5g018520 | 40.663 | 332 | 182 | 7 | 61 | 382 | 93 | 419 | 9.19e-75 | 240 |
| MS.gene71143.t1 | MTR_8g089650 | 39.420 | 345 | 192 | 8 | 52 | 380 | 83 | 426 | 1.36e-73 | 237 |
| MS.gene71143.t1 | MTR_4g068457 | 38.348 | 339 | 192 | 7 | 61 | 385 | 124 | 459 | 4.27e-71 | 232 |
| MS.gene71143.t1 | MTR_5g035980 | 33.676 | 389 | 199 | 13 | 51 | 382 | 57 | 443 | 7.08e-64 | 212 |
| MS.gene71143.t1 | MTR_3g078380 | 36.829 | 391 | 205 | 17 | 32 | 383 | 25 | 412 | 9.14e-64 | 210 |
| MS.gene71143.t1 | MTR_4g104410 | 36.043 | 369 | 210 | 10 | 29 | 382 | 6 | 363 | 9.73e-61 | 201 |
| MS.gene71143.t1 | MTR_4g106480 | 34.795 | 342 | 195 | 12 | 68 | 383 | 60 | 399 | 4.66e-59 | 198 |
| MS.gene71143.t1 | MTR_3g110185 | 32.370 | 346 | 206 | 11 | 58 | 387 | 81 | 414 | 1.06e-48 | 177 |
| MS.gene71143.t1 | MTR_2g101410 | 28.994 | 338 | 204 | 11 | 66 | 382 | 85 | 407 | 9.10e-37 | 139 |
| MS.gene71143.t1 | MTR_3g088545 | 23.264 | 288 | 184 | 6 | 47 | 329 | 68 | 323 | 1.08e-11 | 66.2 |
| MS.gene71143.t1 | MTR_5g087680 | 25.532 | 235 | 149 | 7 | 57 | 289 | 188 | 398 | 9.63e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71143.t1 | AT3G51930 | 67.519 | 391 | 98 | 7 | 23 | 396 | 28 | 406 | 2.19e-179 | 506 |
| MS.gene71143.t1 | AT2G26490 | 43.598 | 328 | 168 | 10 | 66 | 382 | 97 | 418 | 1.62e-79 | 253 |
| MS.gene71143.t1 | AT1G24530 | 40.000 | 345 | 194 | 8 | 47 | 382 | 63 | 403 | 2.23e-75 | 241 |
| MS.gene71143.t1 | AT1G49450 | 38.931 | 393 | 216 | 10 | 13 | 385 | 81 | 469 | 3.98e-73 | 236 |
| MS.gene71143.t1 | AT1G47610 | 39.759 | 332 | 183 | 8 | 66 | 385 | 25 | 351 | 3.48e-72 | 230 |
| MS.gene71143.t1 | AT3G18950 | 37.374 | 396 | 222 | 12 | 12 | 390 | 86 | 472 | 1.91e-67 | 222 |
| MS.gene71143.t1 | AT3G50390 | 37.536 | 349 | 201 | 9 | 58 | 393 | 91 | 435 | 3.64e-67 | 221 |
| MS.gene71143.t1 | AT4G34380 | 39.104 | 335 | 182 | 9 | 66 | 382 | 126 | 456 | 8.14e-66 | 218 |
| MS.gene71143.t1 | AT1G24130 | 38.483 | 356 | 189 | 13 | 52 | 380 | 56 | 408 | 1.22e-65 | 215 |
| MS.gene71143.t1 | AT5G50120 | 35.000 | 360 | 200 | 12 | 55 | 382 | 27 | 384 | 7.00e-59 | 197 |
| MS.gene71143.t1 | AT4G02730 | 23.932 | 351 | 205 | 13 | 42 | 380 | 29 | 329 | 2.30e-14 | 74.3 |
| MS.gene71143.t1 | AT1G21651 | 22.956 | 318 | 213 | 7 | 64 | 381 | 523 | 808 | 2.04e-12 | 69.7 |
| MS.gene71143.t1 | AT1G21650 | 23.308 | 266 | 177 | 4 | 64 | 329 | 523 | 761 | 1.63e-11 | 67.0 |
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGGGTTGATTTATTC+AGG | 0.158969 | 4.1:+57390330 | MS.gene71143:CDS |
| TCCAACAACAAAAGACTATT+TGG | 0.161852 | 4.1:+57390212 | MS.gene71143:CDS |
| GATGATGGTAAATGGATTTA+TGG | 0.188790 | 4.1:+57390585 | MS.gene71143:CDS |
| TGTAAAGTTGGGGTTATAAT+TGG | 0.191734 | 4.1:+57390789 | MS.gene71143:CDS |
| TATGGCAACAACCAGATTTA+AGG | 0.199159 | 4.1:+57390040 | MS.gene71143:CDS |
| CAGATAAAAGTATAGGTATT+TGG | 0.236613 | 4.1:+57390742 | MS.gene71143:CDS |
| TCTTGTTTGGTTGTTCATAA+TGG | 0.237673 | 4.1:+57390315 | MS.gene71143:CDS |
| GTCAAAGCACTAGCAACTTT+TGG | 0.264942 | 4.1:+57390096 | MS.gene71143:CDS |
| TTGTTTCTGATGATGGTAAA+TGG | 0.278123 | 4.1:+57390577 | MS.gene71143:CDS |
| CTTGTTTGGTTGTTCATAAT+GGG | 0.289739 | 4.1:+57390316 | MS.gene71143:CDS |
| TTGGTAAAATTTGTAAAGTT+GGG | 0.317130 | 4.1:+57390778 | MS.gene71143:CDS |
| GGGATAAGACACTTAAAGTT+TGG | 0.330304 | 4.1:+57390358 | MS.gene71143:CDS |
| TTCGCAAACAACCTTAAATC+TGG | 0.338735 | 4.1:-57390051 | None:intergenic |
| CCAACAACAAAAGACTATTT+GGG | 0.358717 | 4.1:+57390213 | MS.gene71143:CDS |
| TTTGGTAAAATTTGTAAAGT+TGG | 0.360311 | 4.1:+57390777 | MS.gene71143:CDS |
| TTCGTGTTTGGAAAGTTTCC+AGG | 0.367861 | 4.1:+57390154 | MS.gene71143:CDS |
| TGCTGATAGCATTTCTTGTT+TGG | 0.374831 | 4.1:+57390302 | MS.gene71143:CDS |
| TTAAGGTTGTTTGCGAAATT+CGG | 0.381571 | 4.1:+57390057 | MS.gene71143:CDS |
| TTTGAAACAAGGGTATTCAT+TGG | 0.389882 | 4.1:-57389772 | None:intergenic |
| TGATGATGGAGTAGAAAGTA+TGG | 0.391324 | 4.1:-57389797 | None:intergenic |
| TTGATAGAAGTGTGAGAGTT+TGG | 0.399809 | 4.1:+57390892 | MS.gene71143:CDS |
| ATCAGTTTCTCATAGATCAT+TGG | 0.403558 | 4.1:+57389927 | MS.gene71143:CDS |
| TTCTGCAGATGGGAAAATTA+AGG | 0.406190 | 4.1:+57390473 | MS.gene71143:CDS |
| TCTGTTGTTGTTTCTGATGA+TGG | 0.413247 | 4.1:+57390570 | MS.gene71143:CDS |
| GCTTCATCATCTAATAGAAT+TGG | 0.416552 | 4.1:+57390840 | MS.gene71143:CDS |
| GCGAAATTCGGTCAAGGCGA+TGG | 0.421578 | 4.1:+57390069 | MS.gene71143:CDS |
| AAGATAGCAAGATTCGTGTT+TGG | 0.431533 | 4.1:+57390142 | MS.gene71143:CDS |
| CAATATGAACTCACCACATA+AGG | 0.445391 | 4.1:-57389989 | None:intergenic |
| GCACATGATGATGCTATCAA+TGG | 0.452397 | 4.1:+57390417 | MS.gene71143:CDS |
| GAACACATTCTCTGAACTCC+TGG | 0.454182 | 4.1:-57390172 | None:intergenic |
| GGTTGATTTATTCAGGGTCA+TGG | 0.455422 | 4.1:+57390337 | MS.gene71143:CDS |
| AGGGCAAAGACATCATAGTA+TGG | 0.455652 | 4.1:+57390022 | MS.gene71143:CDS |
| GTTTATTCTGCTTCTGCAGA+TGG | 0.457417 | 4.1:+57390462 | MS.gene71143:CDS |
| ATTTGGAAAAGAGAGCCTTT+TGG | 0.468370 | 4.1:+57390759 | MS.gene71143:CDS |
| ATGGGTTGGTAGCATGTAAA+GGG | 0.476916 | 4.1:+57390436 | MS.gene71143:CDS |
| GTTTCATGTTTAGCCTTATG+TGG | 0.477781 | 4.1:+57389976 | MS.gene71143:CDS |
| TGAAACAAAGGCACATGAAA+TGG | 0.479515 | 4.1:+57390671 | MS.gene71143:CDS |
| TTGCTTCTACAACTTGATGA+TGG | 0.490998 | 4.1:-57389811 | None:intergenic |
| GTTCATATTGAGTGCATCAC+AGG | 0.491312 | 4.1:+57390002 | MS.gene71143:CDS |
| GATTTGCATGGTGGTGGTGG+TGG | 0.495012 | 4.1:-57389907 | None:intergenic |
| AATGGGTTGGTAGCATGTAA+AGG | 0.503199 | 4.1:+57390435 | MS.gene71143:CDS |
| TGGTAAAATTTGTAAAGTTG+GGG | 0.503634 | 4.1:+57390779 | MS.gene71143:CDS |
| GGATCAGCAGATAAAAGTAT+AGG | 0.505453 | 4.1:+57390735 | MS.gene71143:CDS |
| ATAATGGGTTGATTTATTCA+GGG | 0.512775 | 4.1:+57390331 | MS.gene71143:CDS |
| ATTAAGGCATGGGGAAAACA+AGG | 0.514895 | 4.1:+57390489 | MS.gene71143:CDS |
| GTTGATTTATTCAGGGTCAT+GGG | 0.520892 | 4.1:+57390338 | MS.gene71143:CDS |
| TTTATTCTGCTTCTGCAGAT+GGG | 0.532550 | 4.1:+57390463 | MS.gene71143:CDS |
| GGAGACATCACAAGAGGTTG+TGG | 0.537342 | 4.1:+57390271 | MS.gene71143:CDS |
| AAAGTATGATGAAACAAAAG+TGG | 0.538411 | 4.1:+57390923 | MS.gene71143:CDS |
| AAACTCTCACACTTCTATCA+AGG | 0.539419 | 4.1:-57390890 | None:intergenic |
| GGGGTTATAATTGGACATGA+AGG | 0.541474 | 4.1:+57390798 | MS.gene71143:CDS |
| ACTGATTTGCATGGTGGTGG+TGG | 0.550762 | 4.1:-57389910 | None:intergenic |
| GAAAATGGTTTGTGAAACAA+AGG | 0.552898 | 4.1:+57390659 | MS.gene71143:CDS |
| AGATGGGAAAATTAAGGCAT+GGG | 0.554116 | 4.1:+57390479 | MS.gene71143:CDS |
| TCATCATCTAATAGAATTGG+TGG | 0.559788 | 4.1:+57390843 | MS.gene71143:CDS |
| TAGAAGTGTGAGAGTTTGGT+GGG | 0.560073 | 4.1:+57390896 | MS.gene71143:CDS |
| TTTGTGTATGTGTTTGATTG+GGG | 0.561324 | 4.1:+57390698 | MS.gene71143:CDS |
| TCATCTAATAGAATTGGTGG+TGG | 0.562304 | 4.1:+57390846 | MS.gene71143:CDS |
| CAGATGGGAAAATTAAGGCA+TGG | 0.562592 | 4.1:+57390478 | MS.gene71143:CDS |
| ATTTATGGAGGTGGTTCTGA+TGG | 0.566760 | 4.1:+57390600 | MS.gene71143:CDS |
| AAAGTAATTATGTTCAAACT+AGG | 0.570479 | 4.1:+57390250 | MS.gene71143:CDS |
| ATAGAAGTGTGAGAGTTTGG+TGG | 0.573934 | 4.1:+57390895 | MS.gene71143:CDS |
| GAAGCTTGTAAACACTTCAC+AGG | 0.574638 | 4.1:-57390822 | None:intergenic |
| TCATCAAGTTGTAGAAGCAA+TGG | 0.574974 | 4.1:+57389814 | MS.gene71143:CDS |
| TTGTTTGCGAAATTCGGTCA+AGG | 0.581090 | 4.1:+57390063 | MS.gene71143:CDS |
| CACATGATGATGCTATCAAT+GGG | 0.599549 | 4.1:+57390418 | MS.gene71143:CDS |
| GGTAAATGGATTTATGGAGG+TGG | 0.614977 | 4.1:+57390591 | MS.gene71143:CDS |
| TTGTGTATGTGTTTGATTGG+GGG | 0.615281 | 4.1:+57390699 | MS.gene71143:CDS |
| TTCATATTGAGTGCATCACA+GGG | 0.620924 | 4.1:+57390003 | MS.gene71143:CDS |
| GATGGTAAATGGATTTATGG+AGG | 0.626967 | 4.1:+57390588 | MS.gene71143:CDS |
| TGATGATGCTATCAATGGGT+TGG | 0.627455 | 4.1:+57390422 | MS.gene71143:CDS |
| CAACAACAAAAGACTATTTG+GGG | 0.631861 | 4.1:+57390214 | MS.gene71143:CDS |
| GAAACTGATTTGCATGGTGG+TGG | 0.634072 | 4.1:-57389913 | None:intergenic |
| GTATGATGAAACAAAAGTGG+AGG | 0.645051 | 4.1:+57390926 | MS.gene71143:CDS |
| CTATGAGAAACTGATTTGCA+TGG | 0.653319 | 4.1:-57389919 | None:intergenic |
| GATGGGAAAATTAAGGCATG+GGG | 0.658308 | 4.1:+57390480 | MS.gene71143:CDS |
| GCGATTCTTTCAGAACACGT+TGG | 0.661081 | 4.1:+57389949 | MS.gene71143:CDS |
| AAACTAGGAGACATCACAAG+AGG | 0.664661 | 4.1:+57390265 | MS.gene71143:CDS |
| TTAAGGCATGGGGAAAACAA+GGG | 0.674587 | 4.1:+57390490 | MS.gene71143:CDS |
| TGAGAAACTGATTTGCATGG+TGG | 0.728963 | 4.1:-57389916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTGCATACTTTGAA+GGG | + | chr4.1:57390513-57390532 | MS.gene71143:CDS | 20.0% |
| !! | AAAGTAATTATGTTCAAACT+AGG | + | chr4.1:57390250-57390269 | MS.gene71143:CDS | 20.0% |
| !! | TTGGTAAAATTTGTAAAGTT+GGG | + | chr4.1:57390778-57390797 | MS.gene71143:CDS | 20.0% |
| !! | TTTGGTAAAATTTGTAAAGT+TGG | + | chr4.1:57390777-57390796 | MS.gene71143:CDS | 20.0% |
| !!! | AAATTTTGAGAATTGGAAAA+TGG | + | chr4.1:57390644-57390663 | MS.gene71143:CDS | 20.0% |
| !!! | ACTTTACAAATTTTACCAAA+AGG | - | chr4.1:57390777-57390796 | None:intergenic | 20.0% |
| !!! | ATGAAAGAAATTTTGAGAAT+TGG | + | chr4.1:57390637-57390656 | MS.gene71143:CDS | 20.0% |
| ! | AAAGTATGATGAAACAAAAG+TGG | + | chr4.1:57390923-57390942 | MS.gene71143:CDS | 25.0% |
| ! | GAAAAATTTGCATACTTTGA+AGG | + | chr4.1:57390512-57390531 | MS.gene71143:CDS | 25.0% |
| ! | TGGTAAAATTTGTAAAGTTG+GGG | + | chr4.1:57390779-57390798 | MS.gene71143:CDS | 25.0% |
| !! | CAGATAAAAGTATAGGTATT+TGG | + | chr4.1:57390742-57390761 | MS.gene71143:CDS | 25.0% |
| !! | TTTTGTGTATGTGTTTGATT+GGG | + | chr4.1:57390697-57390716 | MS.gene71143:CDS | 25.0% |
| !!! | AAAGTATGGATTTTGAAACA+AGG | - | chr4.1:57389786-57389805 | None:intergenic | 25.0% |
| !!! | AAGTATGGATTTTGAAACAA+GGG | - | chr4.1:57389785-57389804 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTTCATCATACTT+TGG | - | chr4.1:57390924-57390943 | None:intergenic | 25.0% |
| !!! | ATAATGGGTTGATTTATTCA+GGG | + | chr4.1:57390331-57390350 | MS.gene71143:CDS | 25.0% |
| ATCAGTTTCTCATAGATCAT+TGG | + | chr4.1:57389927-57389946 | MS.gene71143:CDS | 30.0% | |
| CAACAACAAAAGACTATTTG+GGG | + | chr4.1:57390214-57390233 | MS.gene71143:CDS | 30.0% | |
| CCAACAACAAAAGACTATTT+GGG | + | chr4.1:57390213-57390232 | MS.gene71143:CDS | 30.0% | |
| CTTGTTTGGTTGTTCATAAT+GGG | + | chr4.1:57390316-57390335 | MS.gene71143:CDS | 30.0% | |
| GCTTCATCATCTAATAGAAT+TGG | + | chr4.1:57390840-57390859 | MS.gene71143:CDS | 30.0% | |
| TCATCATCTAATAGAATTGG+TGG | + | chr4.1:57390843-57390862 | MS.gene71143:CDS | 30.0% | |
| TCCAACAACAAAAGACTATT+TGG | + | chr4.1:57390212-57390231 | MS.gene71143:CDS | 30.0% | |
| TGTAAAGTTGGGGTTATAAT+TGG | + | chr4.1:57390789-57390808 | MS.gene71143:CDS | 30.0% | |
| TTAAGGTTGTTTGCGAAATT+CGG | + | chr4.1:57390057-57390076 | MS.gene71143:CDS | 30.0% | |
| TTTGTGTATGTGTTTGATTG+GGG | + | chr4.1:57390698-57390717 | MS.gene71143:CDS | 30.0% | |
| ! | GAAAATGGTTTGTGAAACAA+AGG | + | chr4.1:57390659-57390678 | MS.gene71143:CDS | 30.0% |
| ! | GATGATGGTAAATGGATTTA+TGG | + | chr4.1:57390585-57390604 | MS.gene71143:CDS | 30.0% |
| ! | GTTTTGTGTATGTGTTTGAT+TGG | + | chr4.1:57390696-57390715 | MS.gene71143:CDS | 30.0% |
| ! | TCTTGTTTGGTTGTTCATAA+TGG | + | chr4.1:57390315-57390334 | MS.gene71143:CDS | 30.0% |
| !! | CATAATGGGTTGATTTATTC+AGG | + | chr4.1:57390330-57390349 | MS.gene71143:CDS | 30.0% |
| !! | GTGGATTTTTGTTGTATAGT+GGG | + | chr4.1:57390865-57390884 | MS.gene71143:CDS | 30.0% |
| !! | TTGTTTCTGATGATGGTAAA+TGG | + | chr4.1:57390577-57390596 | MS.gene71143:CDS | 30.0% |
| AAACTCTCACACTTCTATCA+AGG | - | chr4.1:57390893-57390912 | None:intergenic | 35.0% | |
| AAGATAGCAAGATTCGTGTT+TGG | + | chr4.1:57390142-57390161 | MS.gene71143:CDS | 35.0% | |
| AGATGGGAAAATTAAGGCAT+GGG | + | chr4.1:57390479-57390498 | MS.gene71143:CDS | 35.0% | |
| CAATATGAACTCACCACATA+AGG | - | chr4.1:57389992-57390011 | None:intergenic | 35.0% | |
| GGGATAAGACACTTAAAGTT+TGG | + | chr4.1:57390358-57390377 | MS.gene71143:CDS | 35.0% | |
| GTATGATGAAACAAAAGTGG+AGG | + | chr4.1:57390926-57390945 | MS.gene71143:CDS | 35.0% | |
| TATGGCAACAACCAGATTTA+AGG | + | chr4.1:57390040-57390059 | MS.gene71143:CDS | 35.0% | |
| TCATCTAATAGAATTGGTGG+TGG | + | chr4.1:57390846-57390865 | MS.gene71143:CDS | 35.0% | |
| TGCTGATAGCATTTCTTGTT+TGG | + | chr4.1:57390302-57390321 | MS.gene71143:CDS | 35.0% | |
| TTCATATTGAGTGCATCACA+GGG | + | chr4.1:57390003-57390022 | MS.gene71143:CDS | 35.0% | |
| TTCGCAAACAACCTTAAATC+TGG | - | chr4.1:57390054-57390073 | None:intergenic | 35.0% | |
| TTCTGCAGATGGGAAAATTA+AGG | + | chr4.1:57390473-57390492 | MS.gene71143:CDS | 35.0% | |
| TTGCTTCTACAACTTGATGA+TGG | - | chr4.1:57389814-57389833 | None:intergenic | 35.0% | |
| TTGTGTATGTGTTTGATTGG+GGG | + | chr4.1:57390699-57390718 | MS.gene71143:CDS | 35.0% | |
| TTTATTCTGCTTCTGCAGAT+GGG | + | chr4.1:57390463-57390482 | MS.gene71143:CDS | 35.0% | |
| ! | ATTTGGAAAAGAGAGCCTTT+TGG | + | chr4.1:57390759-57390778 | MS.gene71143:CDS | 35.0% |
| ! | CACATGATGATGCTATCAAT+GGG | + | chr4.1:57390418-57390437 | MS.gene71143:CDS | 35.0% |
| ! | GATGGTAAATGGATTTATGG+AGG | + | chr4.1:57390588-57390607 | MS.gene71143:CDS | 35.0% |
| ! | GGATCAGCAGATAAAAGTAT+AGG | + | chr4.1:57390735-57390754 | MS.gene71143:CDS | 35.0% |
| ! | GTTGATTTATTCAGGGTCAT+GGG | + | chr4.1:57390338-57390357 | MS.gene71143:CDS | 35.0% |
| ! | TCATCAAGTTGTAGAAGCAA+TGG | + | chr4.1:57389814-57389833 | MS.gene71143:CDS | 35.0% |
| ! | TGAAACAAAGGCACATGAAA+TGG | + | chr4.1:57390671-57390690 | MS.gene71143:CDS | 35.0% |
| ! | TTGATAGAAGTGTGAGAGTT+TGG | + | chr4.1:57390892-57390911 | MS.gene71143:CDS | 35.0% |
| !! | CCCAAATAGTCTTTTGTTGT+TGG | - | chr4.1:57390216-57390235 | None:intergenic | 35.0% |
| !! | CTATGAGAAACTGATTTGCA+TGG | - | chr4.1:57389922-57389941 | None:intergenic | 35.0% |
| !! | GGTGGATTTTTGTTGTATAG+TGG | + | chr4.1:57390864-57390883 | MS.gene71143:CDS | 35.0% |
| !! | GTTTCATGTTTAGCCTTATG+TGG | + | chr4.1:57389976-57389995 | MS.gene71143:CDS | 35.0% |
| !! | TCTGTTGTTGTTTCTGATGA+TGG | + | chr4.1:57390570-57390589 | MS.gene71143:CDS | 35.0% |
| !! | TGATGATGGAGTAGAAAGTA+TGG | - | chr4.1:57389800-57389819 | None:intergenic | 35.0% |
| !!! | ACTTTGAAGGGTGTTTTAGA+GGG | + | chr4.1:57390525-57390544 | MS.gene71143:CDS | 35.0% |
| !!! | TACTTTGAAGGGTGTTTTAG+AGG | + | chr4.1:57390524-57390543 | MS.gene71143:CDS | 35.0% |
| AAACTAGGAGACATCACAAG+AGG | + | chr4.1:57390265-57390284 | MS.gene71143:CDS | 40.0% | |
| AGGGCAAAGACATCATAGTA+TGG | + | chr4.1:57390022-57390041 | MS.gene71143:CDS | 40.0% | |
| ATTAAGGCATGGGGAAAACA+AGG | + | chr4.1:57390489-57390508 | MS.gene71143:CDS | 40.0% | |
| CAGATGGGAAAATTAAGGCA+TGG | + | chr4.1:57390478-57390497 | MS.gene71143:CDS | 40.0% | |
| GAAGCTTGTAAACACTTCAC+AGG | - | chr4.1:57390825-57390844 | None:intergenic | 40.0% | |
| GATGGGAAAATTAAGGCATG+GGG | + | chr4.1:57390480-57390499 | MS.gene71143:CDS | 40.0% | |
| GGGGTTATAATTGGACATGA+AGG | + | chr4.1:57390798-57390817 | MS.gene71143:CDS | 40.0% | |
| GTTCATATTGAGTGCATCAC+AGG | + | chr4.1:57390002-57390021 | MS.gene71143:CDS | 40.0% | |
| GTTTATTCTGCTTCTGCAGA+TGG | + | chr4.1:57390462-57390481 | MS.gene71143:CDS | 40.0% | |
| TTAAGGCATGGGGAAAACAA+GGG | + | chr4.1:57390490-57390509 | MS.gene71143:CDS | 40.0% | |
| TTCGTGTTTGGAAAGTTTCC+AGG | + | chr4.1:57390154-57390173 | MS.gene71143:CDS | 40.0% | |
| TTGTTTGCGAAATTCGGTCA+AGG | + | chr4.1:57390063-57390082 | MS.gene71143:CDS | 40.0% | |
| ! | ATAGAAGTGTGAGAGTTTGG+TGG | + | chr4.1:57390895-57390914 | MS.gene71143:CDS | 40.0% |
| ! | GCACATGATGATGCTATCAA+TGG | + | chr4.1:57390417-57390436 | MS.gene71143:CDS | 40.0% |
| ! | GGTAAATGGATTTATGGAGG+TGG | + | chr4.1:57390591-57390610 | MS.gene71143:CDS | 40.0% |
| ! | GGTTGATTTATTCAGGGTCA+TGG | + | chr4.1:57390337-57390356 | MS.gene71143:CDS | 40.0% |
| ! | TAGAAGTGTGAGAGTTTGGT+GGG | + | chr4.1:57390896-57390915 | MS.gene71143:CDS | 40.0% |
| ! | TGATGATGCTATCAATGGGT+TGG | + | chr4.1:57390422-57390441 | MS.gene71143:CDS | 40.0% |
| !! | AATGGGTTGGTAGCATGTAA+AGG | + | chr4.1:57390435-57390454 | MS.gene71143:CDS | 40.0% |
| !! | ATGGGTTGGTAGCATGTAAA+GGG | + | chr4.1:57390436-57390455 | MS.gene71143:CDS | 40.0% |
| !! | ATTTATGGAGGTGGTTCTGA+TGG | + | chr4.1:57390600-57390619 | MS.gene71143:CDS | 40.0% |
| !! | GTCAAAGCACTAGCAACTTT+TGG | + | chr4.1:57390096-57390115 | MS.gene71143:CDS | 40.0% |
| !! | TGAGAAACTGATTTGCATGG+TGG | - | chr4.1:57389919-57389938 | None:intergenic | 40.0% |
| ATTGGGGGTTATTTGTGCAC+AGG | + | chr4.1:57390714-57390733 | MS.gene71143:CDS | 45.0% | |
| GAACACATTCTCTGAACTCC+TGG | - | chr4.1:57390175-57390194 | None:intergenic | 45.0% | |
| GCGATTCTTTCAGAACACGT+TGG | + | chr4.1:57389949-57389968 | MS.gene71143:CDS | 45.0% | |
| !! | GAAACTGATTTGCATGGTGG+TGG | - | chr4.1:57389916-57389935 | None:intergenic | 45.0% |
| GGAGACATCACAAGAGGTTG+TGG | + | chr4.1:57390271-57390290 | MS.gene71143:CDS | 50.0% | |
| !! | ACTGATTTGCATGGTGGTGG+TGG | - | chr4.1:57389913-57389932 | None:intergenic | 50.0% |
| GCGAAATTCGGTCAAGGCGA+TGG | + | chr4.1:57390069-57390088 | MS.gene71143:CDS | 55.0% | |
| !! | GATTTGCATGGTGGTGGTGG+TGG | - | chr4.1:57389910-57389929 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 57389775 | 57391019 | 57389775 | ID=MS.gene71143 |
| chr4.1 | mRNA | 57389775 | 57391019 | 57389775 | ID=MS.gene71143.t1;Parent=MS.gene71143 |
| chr4.1 | exon | 57389775 | 57391019 | 57389775 | ID=MS.gene71143.t1.exon1;Parent=MS.gene71143.t1 |
| chr4.1 | CDS | 57389775 | 57391019 | 57389775 | ID=cds.MS.gene71143.t1;Parent=MS.gene71143.t1 |
| Gene Sequence |
| Protein sequence |
