AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71876

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71876.t1 MTR_2g078730 97.674 344 8 0 1 344 1 344 0.0 692
MS.gene71876.t1 MTR_1g026860 58.333 324 128 3 26 343 60 382 9.23e-134 386
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71876.t1 AT5G57850 57.680 319 131 2 26 343 58 373 8.84e-128 370
MS.gene71876.t1 AT5G57850 59.797 296 118 1 49 343 1 296 2.17e-127 367
MS.gene71876.t1 AT3G05190 22.939 279 197 7 55 324 267 536 4.63e-14 73.6
MS.gene71876.t1 AT3G05190 22.939 279 197 7 55 324 267 536 4.63e-14 73.6
MS.gene71876.t1 AT3G05190 22.939 279 197 7 55 324 267 536 4.63e-14 73.6
MS.gene71876.t1 AT5G27410 22.183 284 193 8 55 324 176 445 3.31e-12 67.8
MS.gene71876.t1 AT5G27410 22.183 284 193 8 55 324 264 533 3.79e-12 67.8
MS.gene71876.t1 AT5G27410 22.183 284 193 8 55 324 641 910 4.57e-12 67.8

Find 75 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATGGTTGCACTGCTAAA+AGG 0.283245 2.2:-15890247 MS.gene71876:CDS
GCTATGTATTCTAGTGTATA+TGG 0.321285 2.2:-15891301 MS.gene71876:CDS
TGTACCATGTGATCATCTAT+TGG 0.330668 2.2:+15891244 None:intergenic
GATTTCTTACTGTCATCTTC+AGG 0.332881 2.2:-15890560 MS.gene71876:CDS
CGAAGAGTTGATCGCGAAAA+AGG 0.334858 2.2:+15890662 None:intergenic
GGATTTGCTATGGGATGATA+TGG 0.343910 2.2:-15889695 MS.gene71876:CDS
CACCTTGATCAACCAACTTT+GGG 0.353095 2.2:+15890210 None:intergenic
GCAAATAAAGGTGCCTTCAT+TGG 0.359777 2.2:+15890449 None:intergenic
TCTAATACGGAAAGTACATT+TGG 0.368821 2.2:+15890401 None:intergenic
ATTGGGATTACCATCATTGC+TGG 0.374631 2.2:+15891262 None:intergenic
AAGGTGCATTTGGTTCTATA+TGG 0.376862 2.2:-15890367 MS.gene71876:CDS
AGAATTAACAATGTTACTTT+CGG 0.378886 2.2:-15889716 MS.gene71876:CDS
ACAAGTATTCTCTGTGTGTC+AGG 0.378962 2.2:+15889664 None:intergenic
ATGAAAGCAACATTCACATT+TGG 0.387868 2.2:+15890314 None:intergenic
CTAGAATACATAGCTGGATA+TGG 0.396785 2.2:+15891310 None:intergenic
ACACCTTGATCAACCAACTT+TGG 0.403764 2.2:+15890209 None:intergenic
TTGTAGGTTCATTAAACATA+AGG 0.405748 2.2:+15889640 None:intergenic
TGATCATCCCACATGATGAT+AGG 0.413305 2.2:+15890095 None:intergenic
GTACCATGTGATCATCTATT+GGG 0.414603 2.2:+15891245 None:intergenic
GATACTGCTATTATGTTTGA+AGG 0.421904 2.2:-15891202 MS.gene71876:CDS
GCTGAAGAGAAAGGTGCATT+TGG 0.425574 2.2:-15890377 MS.gene71876:CDS
TTTCTCTTCAGCTTCTAATA+CGG 0.429071 2.2:+15890388 None:intergenic
TCCCCAAAGTTGGTTGATCA+AGG 0.435725 2.2:-15890212 MS.gene71876:CDS
TGTTACTTTCGGATTTGCTA+TGG 0.443052 2.2:-15889705 MS.gene71876:CDS
AGAAAGGAACTCTAAGATAC+TGG 0.447947 2.2:-15890601 MS.gene71876:CDS
TCTTGAACTTTCCCCAAAGT+TGG 0.449811 2.2:-15890222 MS.gene71876:CDS
ATTAACTTACCATCACCAAT+TGG 0.463704 2.2:+15890071 None:intergenic
CATACTTGATCCAGCAATGA+TGG 0.467941 2.2:-15891272 MS.gene71876:CDS
TGCTTTCATAACTCAAGAAA+AGG 0.478668 2.2:-15890300 MS.gene71876:CDS
CTCAAGACACCTCTATGAGT+TGG 0.480888 2.2:-15890738 MS.gene71876:intron
TATGTTATTACAGGTAAGGT+TGG 0.487438 2.2:-15889739 MS.gene71876:intron
TACTGGTTAAGTGCAGGTCC+TGG 0.488263 2.2:-15890584 MS.gene71876:CDS
CTATGGGATGATATGGTAGC+TGG 0.500347 2.2:-15889688 MS.gene71876:CDS
TCTATATGGATTGATGAGGT+TGG 0.504339 2.2:-15890353 MS.gene71876:CDS
GCTTCATCAAACATGGAGTT+CGG 0.504869 2.2:-15891344 MS.gene71876:CDS
GTTACTTTCGGATTTGCTAT+GGG 0.509505 2.2:-15889704 MS.gene71876:CDS
CTGTCTTGCCTATCATCATG+TGG 0.512259 2.2:-15890103 MS.gene71876:CDS
TACTTCCAGTGTACCAATGA+AGG 0.515569 2.2:-15890462 MS.gene71876:CDS
ACTGAGACCACTGCAACCTC+TGG 0.521559 2.2:-15892141 MS.gene71876:intron
GAGGTTGCAGTGGTCTCAGT+AGG 0.525496 2.2:+15892144 None:intergenic
CACATGATGATAGGCAAGAC+AGG 0.530752 2.2:+15890104 None:intergenic
CGTGTTCTCTTCATCATCTG+AGG 0.533298 2.2:-15891923 MS.gene71876:intron
GATTTCTCTCAGTGCAAAGA+AGG 0.541297 2.2:-15890497 MS.gene71876:CDS
GATGACAGTAAGAAATCTCC+AGG 0.544571 2.2:+15890566 None:intergenic
TTGAGGCTGATCTTAAGAAA+CGG 0.550222 2.2:+15890702 None:intergenic
ATACTGCTATTATGTTTGAA+GGG 0.551151 2.2:-15891201 MS.gene71876:intron
GCGGTATCAAAATTGAAGAA+AGG 0.557986 2.2:-15890617 MS.gene71876:CDS
CTAAGATACTGGTTAAGTGC+AGG 0.560722 2.2:-15890590 MS.gene71876:CDS
ATGACTACTGCGTAGAATGC+AGG 0.561557 2.2:+15890527 None:intergenic
AGGTTGCAGTGGTCTCAGTA+GGG 0.572433 2.2:+15892145 None:intergenic
ACCTTGATCAACCAACTTTG+GGG 0.573366 2.2:+15890211 None:intergenic
TATACACTAGAATACATAGC+TGG 0.574410 2.2:+15891304 None:intergenic
AGGTGCCTTCATTGGTACAC+TGG 0.574750 2.2:+15890457 None:intergenic
GCTGTTGAAATGATGTATGT+AGG 0.580482 2.2:-15890137 MS.gene71876:CDS
ATGTGGGATGATCAACCAAT+TGG 0.582385 2.2:-15890086 MS.gene71876:CDS
CACATGGTACATAGAGGCCA+TGG 0.583140 2.2:-15891232 MS.gene71876:CDS
CAGCATTCTAATACAACTAA+CGG 0.586750 2.2:-15890639 MS.gene71876:CDS
GTATTAGAAGCTGAAGAGAA+AGG 0.586831 2.2:-15890386 MS.gene71876:CDS
ACTGCGTAGAATGCAGGTGT+TGG 0.589080 2.2:+15890533 None:intergenic
TAGAAAAGCTTCATCAAACA+TGG 0.598481 2.2:-15891351 MS.gene71876:CDS
GGTGAACATCCAACTCATAG+AGG 0.601894 2.2:+15890729 None:intergenic
TGTCTTGCCTATCATCATGT+GGG 0.602668 2.2:-15890102 MS.gene71876:CDS
GATGATCACATGGTACATAG+AGG 0.611347 2.2:-15891238 MS.gene71876:CDS
CAAGTATTCTCTGTGTGTCA+GGG 0.611968 2.2:+15889665 None:intergenic
TAGCAGTATCAAACACGCCA+TGG 0.630664 2.2:+15891215 None:intergenic
TGGTTCTATATGGATTGATG+AGG 0.634951 2.2:-15890357 MS.gene71876:CDS
GAGGTTGGTTATATTGCTGA+AGG 0.635904 2.2:-15890338 MS.gene71876:CDS
TCATCAAACATGGAGTTCGG+TGG 0.644411 2.2:-15891341 MS.gene71876:CDS
CAACTCACCAGAGGTTGCAG+TGG 0.666043 2.2:+15892134 None:intergenic
GATGATCAACCAATTGGTGA+TGG 0.668433 2.2:-15890080 MS.gene71876:intron
CTGATCTTAAGAAACGGTCA+AGG 0.670298 2.2:+15890708 None:intergenic
AATCCCAATAGATGATCACA+TGG 0.675252 2.2:-15891248 MS.gene71876:CDS
CTGACTGTGGATGAAGCTAG+AGG 0.686743 2.2:-15890161 MS.gene71876:CDS
ATGTATTCTAGTGTATATGG+AGG 0.687618 2.2:-15891298 MS.gene71876:CDS
CATTCTAATACAACTAACGG+CGG 0.748431 2.2:-15890636 MS.gene71876:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAGTAATACATTAT+TGG - chr2.2:15890987-15891006 MS.gene71876:intron 10.0%
!! ATTCTATCATTATTATAAGA+TGG + chr2.2:15889938-15889957 None:intergenic 15.0%
!! TTAAAGTTTCAAATTAGAAT+AGG + chr2.2:15889718-15889737 None:intergenic 15.0%
!!! ATTCTAATTTGAAACTTTAA+TGG - chr2.2:15889718-15889737 MS.gene71876:CDS 15.0%
!! ACTAAAAATTATTCCAGTTA+GGG + chr2.2:15890746-15890765 None:intergenic 20.0%
!! TAAGTAAAAAATAATTGGGA+CGG + chr2.2:15891944-15891963 None:intergenic 20.0%
!! TATAGAATGTTATCGAAAAA+AGG + chr2.2:15891541-15891560 None:intergenic 20.0%
!! TTTATTAAATCAAAAGTGGT+TGG - chr2.2:15890662-15890681 MS.gene71876:CDS 20.0%
!!! AAGCTTTATTAAATCAAAAG+TGG - chr2.2:15890658-15890677 MS.gene71876:CDS 20.0%
!!! AGAATTAACAATGTTACTTT+CGG - chr2.2:15892088-15892107 MS.gene71876:intron 20.0%
!!! TGTTCTTATTGTATATGTTT+TGG - chr2.2:15889796-15889815 MS.gene71876:intron 20.0%
!!! TTTTTCATTGTTGCAAATAA+AGG + chr2.2:15891370-15891389 None:intergenic 20.0%
!!! TTTTTCGATAACATTCTATA+TGG - chr2.2:15891541-15891560 MS.gene71876:intron 20.0%
! AACATAATTCTTATTCCACT+AGG + chr2.2:15890169-15890188 None:intergenic 25.0%
! ATAAGATTCAATTCACGATT+CGG - chr2.2:15892007-15892026 MS.gene71876:intron 25.0%
! ATACTGCTATTATGTTTGAA+GGG - chr2.2:15890603-15890622 MS.gene71876:CDS 25.0%
! GAATAAGAATTATGTTGCAT+CGG - chr2.2:15890173-15890192 MS.gene71876:CDS 25.0%
! GACTAAAAATTATTCCAGTT+AGG + chr2.2:15890747-15890766 None:intergenic 25.0%
! TATGACACTTAACACTAAAA+CGG + chr2.2:15890319-15890338 None:intergenic 25.0%
! TTAAAGTTTGCAAGTTTCAT+TGG - chr2.2:15890411-15890430 MS.gene71876:CDS 25.0%
! TTGATTGTCTATGTTATTAC+AGG - chr2.2:15892056-15892075 MS.gene71876:intron 25.0%
!! AAGTAGTTAAGCTTTAGTTA+AGG - chr2.2:15890689-15890708 MS.gene71876:CDS 25.0%
!! TGCTTTACTAGTTCATATTT+TGG - chr2.2:15889744-15889763 MS.gene71876:intron 25.0%
!! TTCATATCGATTAAGCTTAA+AGG + chr2.2:15891808-15891827 None:intergenic 25.0%
!!! GCTAAATTTGTTTTCTTTCT+TGG - chr2.2:15889818-15889837 MS.gene71876:intron 25.0%
AACTAAAGCTTAACTACTTC+AGG + chr2.2:15890688-15890707 None:intergenic 30.0%
AACTACTAAAAATCTGACTG+TGG - chr2.2:15891630-15891649 MS.gene71876:intron 30.0%
AATAGGATCACAAAAACTGA+AGG + chr2.2:15889701-15889720 None:intergenic 30.0%
ATGAAAGCAACATTCACATT+TGG + chr2.2:15891493-15891512 None:intergenic 30.0%
ATGGTACTACAAAAAAGTGA+AGG + chr2.2:15889919-15889938 None:intergenic 30.0%
ATGTATTCTAGTGTATATGG+AGG - chr2.2:15890506-15890525 MS.gene71876:CDS 30.0%
ATTAACTTACCATCACCAAT+TGG + chr2.2:15891736-15891755 None:intergenic 30.0%
ATTCAGTGCTTCAAAAGATA+AGG - chr2.2:15890338-15890357 MS.gene71876:CDS 30.0%
CAAACAAAGCAAGAATAATC+TGG + chr2.2:15890797-15890816 None:intergenic 30.0%
CAGCATTCTAATACAACTAA+CGG - chr2.2:15891165-15891184 MS.gene71876:intron 30.0%
GAATAAGAACTATGTAGCAT+CGG - chr2.2:15889998-15890017 MS.gene71876:intron 30.0%
GATACTGCTATTATGTTTGA+AGG - chr2.2:15890602-15890621 MS.gene71876:CDS 30.0%
GCTATGTATTCTAGTGTATA+TGG - chr2.2:15890503-15890522 MS.gene71876:CDS 30.0%
GTTTGGATAAAAGTTACGAA+TGG + chr2.2:15890918-15890937 None:intergenic 30.0%
TACATAGTTCTTATTCCACT+AGG + chr2.2:15889994-15890013 None:intergenic 30.0%
TAGAAAAGCTTCATCAAACA+TGG - chr2.2:15890453-15890472 MS.gene71876:CDS 30.0%
TAGTTAAGGTTGAATCACTT+GGG - chr2.2:15890703-15890722 MS.gene71876:CDS 30.0%
TATACACTAGAATACATAGC+TGG + chr2.2:15890503-15890522 None:intergenic 30.0%
TATGTTATTACAGGTAAGGT+TGG - chr2.2:15892065-15892084 MS.gene71876:intron 30.0%
TCGGTAATGATTTGAGAAAA+TGG + chr2.2:15890283-15890302 None:intergenic 30.0%
TGCTTTCATAACTCAAGAAA+AGG - chr2.2:15891504-15891523 MS.gene71876:intron 30.0%
TGTCTATGTTATTACAGGTA+AGG - chr2.2:15892061-15892080 MS.gene71876:intron 30.0%
TGTGTATATCTATCCTTGTT+TGG - chr2.2:15891769-15891788 MS.gene71876:intron 30.0%
TTAACTCTACAGTTCCTATA+GGG + chr2.2:15890968-15890987 None:intergenic 30.0%
TTAGTTAAGGTTGAATCACT+TGG - chr2.2:15890702-15890721 MS.gene71876:CDS 30.0%
TTTAACTCTACAGTTCCTAT+AGG + chr2.2:15890969-15890988 None:intergenic 30.0%
TTTCTCTTCAGCTTCTAATA+CGG + chr2.2:15891419-15891438 None:intergenic 30.0%
! CAGATTATTCTTGCTTTGTT+TGG - chr2.2:15890795-15890814 MS.gene71876:intron 30.0%
! TCTAATACGGAAAGTACATT+TGG + chr2.2:15891406-15891425 None:intergenic 30.0%
! TTCGTAACTTTTATCCAAAC+AGG - chr2.2:15890918-15890937 MS.gene71876:intron 30.0%
!! AATTGGTGATGGTAAGTTAA+TGG - chr2.2:15891735-15891754 MS.gene71876:intron 30.0%
!! CTTCATTTTGAAAATGTCTC+TGG - chr2.2:15890023-15890042 MS.gene71876:intron 30.0%
!! TATTCTTGCTTTGTTTGGTT+TGG - chr2.2:15890800-15890819 MS.gene71876:intron 30.0%
AAGTCAGCTATATGTATCGA+AGG + chr2.2:15889969-15889988 None:intergenic 35.0%
AATCCCAATAGATGATCACA+TGG - chr2.2:15890556-15890575 MS.gene71876:CDS 35.0%
AGTTAAGGTTGAATCACTTG+GGG - chr2.2:15890704-15890723 MS.gene71876:CDS 35.0%
CATAAATCATAGTGCCTGTT+TGG + chr2.2:15890935-15890954 None:intergenic 35.0%
CATTCTAATACAACTAACGG+CGG - chr2.2:15891168-15891187 MS.gene71876:intron 35.0%
CTAGAATACATAGCTGGATA+TGG + chr2.2:15890497-15890516 None:intergenic 35.0%
GATTTCTTACTGTCATCTTC+AGG - chr2.2:15891244-15891263 MS.gene71876:CDS 35.0%
GCGGTATCAAAATTGAAGAA+AGG - chr2.2:15891187-15891206 MS.gene71876:intron 35.0%
GCTGTTGAAATGATGTATGT+AGG - chr2.2:15891667-15891686 MS.gene71876:intron 35.0%
GTACCATGTGATCATCTATT+GGG + chr2.2:15890562-15890581 None:intergenic 35.0%
GTATTAGAAGCTGAAGAGAA+AGG - chr2.2:15891418-15891437 MS.gene71876:intron 35.0%
TAACTCTACAGTTCCTATAG+GGG + chr2.2:15890967-15890986 None:intergenic 35.0%
TATATGGTTGCACTGCTAAA+AGG - chr2.2:15891557-15891576 MS.gene71876:intron 35.0%
TGTACCATGTGATCATCTAT+TGG + chr2.2:15890563-15890582 None:intergenic 35.0%
TTAATGCTTCATGCCAAACA+AGG + chr2.2:15891785-15891804 None:intergenic 35.0%
TTGAGGCTGATCTTAAGAAA+CGG + chr2.2:15891105-15891124 None:intergenic 35.0%
! ATATAGCTGACTTTACCTAG+TGG - chr2.2:15889976-15889995 MS.gene71876:intron 35.0%
! CAATTCACGATTCGGAAAAT+AGG - chr2.2:15892015-15892034 MS.gene71876:intron 35.0%
! TCTATATGGATTGATGAGGT+TGG - chr2.2:15891451-15891470 MS.gene71876:intron 35.0%
! TGGTTCTATATGGATTGATG+AGG - chr2.2:15891447-15891466 MS.gene71876:intron 35.0%
!! AAGGTGCATTTGGTTCTATA+TGG - chr2.2:15891437-15891456 MS.gene71876:intron 35.0%
!! AGAAAGGAACTCTAAGATAC+TGG - chr2.2:15891203-15891222 MS.gene71876:CDS 35.0%
!! GTTACTTTCGGATTTGCTAT+GGG - chr2.2:15892100-15892119 MS.gene71876:intron 35.0%
!! TGTTACTTTCGGATTTGCTA+TGG - chr2.2:15892099-15892118 MS.gene71876:intron 35.0%
AAACGGTAACACGTAGACAT+CGG + chr2.2:15890302-15890321 None:intergenic 40.0%
ACAAGTATTCTCTGTGTGTC+AGG + chr2.2:15892143-15892162 None:intergenic 40.0%
ACACCTTGATCAACCAACTT+TGG + chr2.2:15891598-15891617 None:intergenic 40.0%
ACAGTTCCTATAGGGGAAAA+GGG + chr2.2:15890960-15890979 None:intergenic 40.0%
ACCTTGATCAACCAACTTTG+GGG + chr2.2:15891596-15891615 None:intergenic 40.0%
ATGTGGGATGATCAACCAAT+TGG - chr2.2:15891718-15891737 MS.gene71876:intron 40.0%
ATTGGGATTACCATCATTGC+TGG + chr2.2:15890545-15890564 None:intergenic 40.0%
CAAGTATTCTCTGTGTGTCA+GGG + chr2.2:15892142-15892161 None:intergenic 40.0%
CACCTTGATCAACCAACTTT+GGG + chr2.2:15891597-15891616 None:intergenic 40.0%
CATACTTGATCCAGCAATGA+TGG - chr2.2:15890532-15890551 MS.gene71876:CDS 40.0%
CTGATCTTAAGAAACGGTCA+AGG + chr2.2:15891099-15891118 None:intergenic 40.0%
GATGACAGTAAGAAATCTCC+AGG + chr2.2:15891241-15891260 None:intergenic 40.0%
GATGATCAACCAATTGGTGA+TGG - chr2.2:15891724-15891743 MS.gene71876:intron 40.0%
GATGATCACATGGTACATAG+AGG - chr2.2:15890566-15890585 MS.gene71876:CDS 40.0%
GATTTCTCTCAGTGCAAAGA+AGG - chr2.2:15891307-15891326 MS.gene71876:CDS 40.0%
GCTTCATCAAACATGGAGTT+CGG - chr2.2:15890460-15890479 MS.gene71876:CDS 40.0%
TACAGTTCCTATAGGGGAAA+AGG + chr2.2:15890961-15890980 None:intergenic 40.0%
TACTTCCAGTGTACCAATGA+AGG - chr2.2:15891342-15891361 MS.gene71876:CDS 40.0%
TCTCAGCTTCAAGAAAGTCA+CGG + chr2.2:15890865-15890884 None:intergenic 40.0%
TCTTGAACTTTCCCCAAAGT+TGG - chr2.2:15891582-15891601 MS.gene71876:intron 40.0%
TGATCATCCCACATGATGAT+AGG + chr2.2:15891712-15891731 None:intergenic 40.0%
TGTCGTGTCAGTGTCAAATA+AGG + chr2.2:15890063-15890082 None:intergenic 40.0%
TGTCTTGCCTATCATCATGT+GGG - chr2.2:15891702-15891721 MS.gene71876:intron 40.0%
TTCCAGTTAGGGATTGAACT+CGG + chr2.2:15890735-15890754 None:intergenic 40.0%
! CTAAGATACTGGTTAAGTGC+AGG - chr2.2:15891214-15891233 MS.gene71876:CDS 40.0%
! GAGGTTGGTTATATTGCTGA+AGG - chr2.2:15891466-15891485 MS.gene71876:intron 40.0%
!! CGAGGATATCTTTGCTTTTG+AGG + chr2.2:15891122-15891141 None:intergenic 40.0%
!! GCAAATAAAGGTGCCTTCAT+TGG + chr2.2:15891358-15891377 None:intergenic 40.0%
!! GGATTTGCTATGGGATGATA+TGG - chr2.2:15892109-15892128 MS.gene71876:intron 40.0%
!! TCTTGCTTTGTTTGGTTTGG+CGG - chr2.2:15890803-15890822 MS.gene71876:intron 40.0%
!!! CTTCATTTTGGAAGTGTCTC+TGG - chr2.2:15890198-15890217 MS.gene71876:CDS 40.0%
AGTCACGGCAAATCATGCAT+TGG + chr2.2:15890850-15890869 None:intergenic 45.0%
ATGACTACTGCGTAGAATGC+AGG + chr2.2:15891280-15891299 None:intergenic 45.0%
ATGCATTGGGAAGCGAGAAT+TGG + chr2.2:15890836-15890855 None:intergenic 45.0%
CACATGATGATAGGCAAGAC+AGG + chr2.2:15891703-15891722 None:intergenic 45.0%
CGTGTTCTCTTCATCATCTG+AGG - chr2.2:15889881-15889900 MS.gene71876:intron 45.0%
CTATGGGATGATATGGTAGC+TGG - chr2.2:15892116-15892135 MS.gene71876:intron 45.0%
CTCAAGACACCTCTATGAGT+TGG - chr2.2:15891066-15891085 MS.gene71876:intron 45.0%
CTGTCTTGCCTATCATCATG+TGG - chr2.2:15891701-15891720 MS.gene71876:intron 45.0%
GGTGAACATCCAACTCATAG+AGG + chr2.2:15891078-15891097 None:intergenic 45.0%
GTCACGGCAAATCATGCATT+GGG + chr2.2:15890849-15890868 None:intergenic 45.0%
GTTACGAATGGCCAAAAGCA+CGG + chr2.2:15890906-15890925 None:intergenic 45.0%
TAATCTGGACTTCGACTGTG+TGG + chr2.2:15890782-15890801 None:intergenic 45.0%
TAGCAGTATCAAACACGCCA+TGG + chr2.2:15890592-15890611 None:intergenic 45.0%
TCATCAAACATGGAGTTCGG+TGG - chr2.2:15890463-15890482 MS.gene71876:CDS 45.0%
TCCAGTTAGGGATTGAACTC+GGG + chr2.2:15890734-15890753 None:intergenic 45.0%
TGCATTGGGAAGCGAGAATT+GGG + chr2.2:15890835-15890854 None:intergenic 45.0%
! AGTTAGACTTGCCGTGCTTT+TGG - chr2.2:15890892-15890911 MS.gene71876:intron 45.0%
! ATGTAGCTGACTTCACCTAG+TGG - chr2.2:15890151-15890170 MS.gene71876:CDS 45.0%
! CGAAGAGTTGATCGCGAAAA+AGG + chr2.2:15891145-15891164 None:intergenic 45.0%
! GCTGAAGAGAAAGGTGCATT+TGG - chr2.2:15891427-15891446 MS.gene71876:intron 45.0%
! TATGTGCCCTTTTCCCCTAT+AGG - chr2.2:15890951-15890970 MS.gene71876:intron 45.0%
! TCCCCAAAGTTGGTTGATCA+AGG - chr2.2:15891592-15891611 MS.gene71876:intron 45.0%
!! GTTGCATCGGCACTTCATTT+TGG - chr2.2:15890186-15890205 MS.gene71876:CDS 45.0%
!!! ATTTTTAAGTAAAAAATAAT+TGG + chr2.2:15891949-15891968 None:intergenic 5.0%
!!! TTTTTAAGTAAAAAATAATT+GGG + chr2.2:15891948-15891967 None:intergenic 5.0%
ACCCGAGTTCAATCCCTAAC+TGG - chr2.2:15890730-15890749 MS.gene71876:CDS 50.0%
ACTGCAACCTCTGGTGAGTT+GGG - chr2.2:15889672-15889691 MS.gene71876:CDS 50.0%
ACTGCGTAGAATGCAGGTGT+TGG + chr2.2:15891274-15891293 None:intergenic 50.0%
AGGTGCCTTCATTGGTACAC+TGG + chr2.2:15891350-15891369 None:intergenic 50.0%
AGGTTGCAGTGGTCTCAGTA+GGG + chr2.2:15889662-15889681 None:intergenic 50.0%
AGTTGATCGCGAAAAAGGCG+AGG + chr2.2:15891140-15891159 None:intergenic 50.0%
CACATGGTACATAGAGGCCA+TGG - chr2.2:15890572-15890591 MS.gene71876:CDS 50.0%
CTGACTGTGGATGAAGCTAG+AGG - chr2.2:15891643-15891662 MS.gene71876:intron 50.0%
TGGACTTCGACTGTGTGGTA+AGG + chr2.2:15890777-15890796 None:intergenic 50.0%
! TACTGGTTAAGTGCAGGTCC+TGG - chr2.2:15891220-15891239 MS.gene71876:CDS 50.0%
!! TGCTTTGTTTGGTTTGGCGG+TGG - chr2.2:15890806-15890825 MS.gene71876:intron 50.0%
AAGGCAACCCAACTCACCAG+AGG + chr2.2:15889682-15889701 None:intergenic 55.0%
ACTGAGACCACTGCAACCTC+TGG - chr2.2:15889663-15889682 MS.gene71876:CDS 55.0%
CAACTCACCAGAGGTTGCAG+TGG + chr2.2:15889673-15889692 None:intergenic 55.0%
CACTGCAACCTCTGGTGAGT+TGG - chr2.2:15889671-15889690 MS.gene71876:CDS 55.0%
CTGACACGACACTACGCATG+TGG - chr2.2:15890072-15890091 MS.gene71876:intron 55.0%
GAGGTTGCAGTGGTCTCAGT+AGG + chr2.2:15889663-15889682 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 15889651 15892175 15889651 ID=MS.gene71876
chr2.2 mRNA 15889651 15892175 15889651 ID=MS.gene71876.t1;Parent=MS.gene71876
chr2.2 exon 15892142 15892175 15892142 ID=MS.gene71876.t1.exon1;Parent=MS.gene71876.t1
chr2.2 CDS 15892142 15892175 15892142 ID=cds.MS.gene71876.t1;Parent=MS.gene71876.t1
chr2.2 exon 15891924 15891976 15891924 ID=MS.gene71876.t1.exon2;Parent=MS.gene71876.t1
chr2.2 CDS 15891924 15891976 15891924 ID=cds.MS.gene71876.t1;Parent=MS.gene71876.t1
chr2.2 exon 15891202 15891377 15891202 ID=MS.gene71876.t1.exon3;Parent=MS.gene71876.t1
chr2.2 CDS 15891202 15891377 15891202 ID=cds.MS.gene71876.t1;Parent=MS.gene71876.t1
chr2.2 exon 15890081 15890754 15890081 ID=MS.gene71876.t1.exon4;Parent=MS.gene71876.t1
chr2.2 CDS 15890081 15890754 15890081 ID=cds.MS.gene71876.t1;Parent=MS.gene71876.t1
chr2.2 exon 15889651 15889748 15889651 ID=MS.gene71876.t1.exon5;Parent=MS.gene71876.t1
chr2.2 CDS 15889651 15889748 15889651 ID=cds.MS.gene71876.t1;Parent=MS.gene71876.t1
Gene Sequence

>MS.gene71876

ATGGGGAACCCTACTGAGACCACTGCAACCTCTGGTGAGTTGGGTTGCCTTCAGTTTTTGTGATCCTATTCTAATTTGAAACTTTAATGGTCTTGCTTTACTAGTTCATATTTTGGTTGAAACTTTAGTGATTATGAATGTATAATGTTCTTATTGTATATGTTTTGGCTAAATTTGTTTTCTTTCTTGGTGTGTATAGAGATTGAAATTGATAATGATTTTAAAGTTCACGTGTTCTCTTCATCATCTGAGGTGAGATTTTCAACCTTCACTTTTTTGTAGTACCATCTTATAATAATGATAGAATATTAGTGTCCTTCGATACATATAGCTGACTTTACCTAGTGGAATAAGAACTATGTAGCATCGGCACTTCATTTTGAAAATGTCTCTGGTGTCTGACATATGTCCTTATTTGACACTGACACGACACTACGCATGTGGTTACATTAAATCACTTCTATTTTCACAAATCATTACATGTGTCGTTCGTTCAATACATGTAGCTGACTTCACCTAGTGGAATAAGAATTATGTTGCATCGGCACTTCATTTTGGAAGTGTCTCTGGTGTCTGACATATGTCTTTATTTGACACGACACTACATATGTGATTACATTCAATCACTTCCATTTTCTCAAATCATTACCGATGTCTACGTGTTACCGTTTTAGTGTTAAGTGTCATATTCAGTGCTTCAAAAGATAAGGCGTGTTGTTTTTGTAGTTATATTATTTGATTAACTACTACAATCAGTAAATTAAAGTTTGCAAGTTTCATTGGCTTTACATTCTTCAGTTACTAGAAAAGCTTCATCAAACATGGAGTTCGGTGGAGAAACAACCATATCCAGCTATGTATTCTAGTGTATATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCAATAGATGATCACATGGTACATAGAGGCCATGGCGTGTTTGATACTGCTATTATGTTTGAAGGGTAATACTAATTTTTGTTTTCTTTCTTGTAACAAAGCTTTATTAAATCAAAAGTGGTTGGCCTGAAGTAGTTAAGCTTTAGTTAAGGTTGAATCACTTGGGGAGCACCCGAGTTCAATCCCTAACTGGAATAATTTTTAGTCAGACTTTCCTTACCACACAGTCGAAGTCCAGATTATTCTTGCTTTGTTTGGTTTGGCGGTGGAAACCCAATTCTCGCTTCCCAATGCATGATTTGCCGTGACTTTCTTGAAGCTGAGAATTGTAGAGTTAGACTTGCCGTGCTTTTGGCCATTCGTAACTTTTATCCAAACAGGCACTATGATTTATGTGCCCTTTTCCCCTATAGGAACTGTAGAGTTAAAAAAATAGTAATACATTATTGGTTTTACTTTGAATGTTCATATTTTTCTCTTATCTTGATATTTATGTTGTTTGTTTTCTCAAGACACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCTTAAGATCAGCCTCAAAAGCAAAGATATCCTCGCCTTTTTCGCGATCAACTCTTCGCAGCATTCTAATACAACTAACGGCGGTATCAAAATTGAAGAAAGGAACTCTAAGATACTGGTTAAGTGCAGGTCCTGGAGATTTCTTACTGTCATCTTCAGGATGTCCAACACCTGCATTCTACGCAGTAGTCATTGATCATGATTTCTCTCAGTGCAAAGAAGGTGTCAAAGTGATTACTTCCAGTGTACCAATGAAGGCACCTTTATTTGCAACAATGAAAAATGTGAACTATCTTCCAAATGTACTTTCCGTATTAGAAGCTGAAGAGAAAGGTGCATTTGGTTCTATATGGATTGATGAGGTTGGTTATATTGCTGAAGGACCAAATGTGAATGTTGCTTTCATAACTCAAGAAAAGGAACTTGTTATGCCTTTTTTCGATAACATTCTATATGGTTGCACTGCTAAAAGGCTTCTTGAACTTTCCCCAAAGTTGGTTGATCAAGGTGTTCTAAAAAGTGTAACTACTAAAAATCTGACTGTGGATGAAGCTAGAGGTGCTGTTGAAATGATGTATGTAGGAAGCACACTTCCTGTCTTGCCTATCATCATGTGGGATGATCAACCAATTGGTGATGGTAAGTTAATGGCAGAAATTATCTGTGTATATCTATCCTTGTTTGGCATGAAGCATTAACCTTTAAGCTTAATCGATATGAATCTCTAATATTGTTTATTTTCAATACGAGTCTCGTCTTGAATCTAGTCTCTTTATGTTGAATCTTGATTCATTGTGATGACGTTAGTAGATGAAATATGAACTTATAATTTTTCCGTCCCAATTATTTTTTACTTAAAAATTGTCATATTTCTATTAGTAATGTATCTTACGATTCATAATAAGATTCAATTCACGATTCGGAAAATAGGTCTTCTGATTCACAAATCTTGATTGTCTATGTTATTACAGGTAAGGTTGGAGAATTAACAATGTTACTTTCGGATTTGCTATGGGATGATATGGTAGCTGGCCCTGACACACAGAGAATACTTGTTCCTTATGTTTAA
Protein sequence

>MS.gene71876.t1

MGNPTETTATSEIEIDNDFKVHVFSSSSELLEKLHQTWSSVEKQPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIMFEGHLYELDVHLDRFLRSASKAKISSPFSRSTLRSILIQLTAVSKLKKGTLRYWLSAGPGDFLLSSSGCPTPAFYAVVIDHDFSQCKEGVKVITSSVPMKAPLFATMKNVNYLPNVLSVLEAEEKGAFGSIWIDEVGYIAEGPNVNVAFITQEKELVMPFFDNILYGCTAKRLLELSPKLVDQGVLKSVTTKNLTVDEARGAVEMMYVGSTLPVLPIIMWDDQPIGDGKVGELTMLLSDLLWDDMVAGPDTQRILVPYV