AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72018

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72018.t1 MTR_3g110420 97.028 471 14 0 1 471 1 471 0.0 940
MS.gene72018.t1 MTR_1g007180 68.777 458 141 1 14 471 2 457 0.0 677
MS.gene72018.t1 MTR_2g031750 67.982 456 144 1 16 471 4 457 0.0 669
MS.gene72018.t1 MTR_3g110420 96.997 333 10 0 1 333 1 333 0.0 662
MS.gene72018.t1 MTR_1g007240 67.249 458 148 1 14 471 2 457 0.0 653
MS.gene72018.t1 MTR_2g031750 66.237 388 129 1 84 471 5 390 0.0 558
MS.gene72018.t1 MTR_1g007270 56.900 471 194 4 2 470 9 472 0.0 550
MS.gene72018.t1 MTR_3g110430 55.965 461 201 1 10 470 47 505 0.0 518
MS.gene72018.t1 MTR_3g110660 52.391 460 217 2 14 471 23 482 0.0 515
MS.gene72018.t1 MTR_1g007380 50.976 461 224 2 13 471 12 472 5.96e-178 507
MS.gene72018.t1 MTR_1g105980 52.516 457 215 2 13 467 11 467 2.05e-174 498
MS.gene72018.t1 MTR_8g094290 52.772 451 208 3 18 467 25 471 3.77e-173 495
MS.gene72018.t1 MTR_1g105995 52.632 456 214 2 14 467 11 466 1.55e-171 491
MS.gene72018.t1 MTR_1g106000 51.754 456 209 3 23 467 14 469 1.26e-167 481
MS.gene72018.t1 MTR_4g073520 49.254 469 232 2 5 467 40 508 1.36e-167 482
MS.gene72018.t1 MTR_4g073520 49.254 469 232 2 5 467 40 508 1.64e-167 482
MS.gene72018.t1 MTR_3g088455 48.812 463 232 3 7 467 16 475 2.00e-165 475
MS.gene72018.t1 MTR_1g105990 51.168 471 222 4 1 466 1 468 2.54e-163 470
MS.gene72018.t1 MTR_3g088475 48.491 464 233 4 7 467 16 476 4.11e-163 469
MS.gene72018.t1 MTR_1g029750 50.340 441 216 2 7 445 18 457 1.27e-162 468
MS.gene72018.t1 MTR_3g096800 47.186 462 233 4 10 467 19 473 8.97e-156 451
MS.gene72018.t1 MTR_1g007180 66.557 305 100 1 167 471 71 373 7.47e-152 437
MS.gene72018.t1 MTR_3g096830 49.787 470 227 6 1 467 1 464 9.89e-152 440
MS.gene72018.t1 MTR_3g096840 46.452 465 243 4 4 467 20 479 6.53e-150 436
MS.gene72018.t1 MTR_3g061390 45.805 441 235 2 18 457 17 454 4.63e-145 423
MS.gene72018.t1 MTR_3g461440 44.105 458 251 3 1 457 1 454 9.12e-144 420
MS.gene72018.t1 MTR_3g461470 43.384 461 256 3 1 460 1 457 1.68e-141 414
MS.gene72018.t1 MTR_3g461430 45.890 438 233 2 21 457 27 461 2.89e-141 415
MS.gene72018.t1 MTR_5g096840 44.749 438 235 4 23 457 28 461 1.52e-136 401
MS.gene72018.t1 MTR_3g110660 56.250 320 139 1 14 332 23 342 4.35e-130 382
MS.gene72018.t1 MTR_3g461480 41.485 458 263 3 2 457 5 459 1.20e-123 369
MS.gene72018.t1 MTR_3g088465 45.845 373 194 5 7 375 16 384 6.87e-118 352
MS.gene72018.t1 MTR_5g096850 39.359 437 260 3 23 457 24 457 3.00e-109 332
MS.gene72018.t1 MTR_3g461440 44.304 316 172 2 143 457 5 317 1.96e-98 299
MS.gene72018.t1 MTR_5g017200 51.737 259 107 4 13 268 21 264 5.97e-79 247
MS.gene72018.t1 MTR_1g007190 47.964 221 77 6 34 254 20 202 7.70e-54 179
MS.gene72018.t1 MTR_6g022790 26.728 434 279 12 4 432 20 419 1.19e-40 151
MS.gene72018.t1 MTR_2g101920 27.045 440 275 15 2 432 23 425 1.81e-38 145
MS.gene72018.t1 MTR_4g103890 27.295 414 262 9 24 433 10 388 2.34e-38 144
MS.gene72018.t1 MTR_8g080120 25.738 474 306 13 1 467 1 435 1.06e-36 140
MS.gene72018.t1 MTR_1g070470 25.536 466 306 13 10 467 5 437 4.86e-36 139
MS.gene72018.t1 MTR_3g005740 27.902 448 286 10 25 467 53 468 2.31e-34 134
MS.gene72018.t1 MTR_5g054730 27.586 464 292 12 13 467 10 438 8.15e-34 132
MS.gene72018.t1 MTR_4g055610 27.803 446 266 15 3 425 10 422 2.05e-33 131
MS.gene72018.t1 MTR_1g093030 26.509 464 301 11 8 467 9 436 6.43e-31 124
MS.gene72018.t1 MTR_3g085820 26.705 352 224 9 6 342 4 336 1.26e-29 119
MS.gene72018.t1 MTR_1g093020 25.581 473 309 12 1 467 1 436 4.26e-29 119
MS.gene72018.t1 MTR_2g096830 25.895 475 292 11 4 467 2 427 4.91e-29 119
MS.gene72018.t1 MTR_6g022780 25.966 466 293 11 13 467 3 427 1.89e-28 117
MS.gene72018.t1 MTR_1g093020 26.484 438 279 12 1 432 1 401 3.30e-28 116
MS.gene72018.t1 MTR_2g096830 27.666 347 212 9 4 342 2 317 4.00e-28 114
MS.gene72018.t1 MTR_6g023075 25.586 469 294 12 10 467 3 427 7.27e-27 112
MS.gene72018.t1 MTR_7g038910 24.946 465 306 13 10 467 14 442 1.02e-26 112
MS.gene72018.t1 MTR_7g038910 25.882 340 225 10 10 342 14 333 1.90e-26 110
MS.gene72018.t1 MTR_7g038910 25.882 340 225 10 10 342 14 333 3.10e-26 110
MS.gene72018.t1 MTR_1g492640 24.370 476 320 14 2 467 33 478 1.80e-25 109
MS.gene72018.t1 MTR_6g023065 24.009 454 294 11 24 467 50 462 5.55e-25 107
MS.gene72018.t1 MTR_3g115090 24.670 454 303 11 15 457 73 498 1.62e-24 106
MS.gene72018.t1 MTR_4g075750 27.706 462 284 15 24 467 70 499 1.52e-23 103
MS.gene72018.t1 MTR_0531s0020 24.713 348 224 9 13 343 27 353 1.72e-22 99.0
MS.gene72018.t1 MTR_8g099320 22.912 467 322 11 10 467 10 447 3.91e-22 99.0
MS.gene72018.t1 MTR_1g492640 24.069 349 238 11 2 340 15 346 1.41e-17 84.7
MS.gene72018.t1 MTR_1g492640 24.069 349 238 11 2 340 33 364 1.72e-17 84.3
MS.gene72018.t1 MTR_5g023240 23.195 457 309 14 25 470 87 512 2.69e-14 75.5
MS.gene72018.t1 MTR_1g492640 24.586 362 239 11 111 467 14 346 1.72e-13 72.0
MS.gene72018.t1 MTR_5g081630 21.635 416 284 11 55 467 4 380 3.05e-13 71.6
MS.gene72018.t1 MTR_1g492640 24.201 219 150 6 2 215 15 222 1.71e-11 65.1
MS.gene72018.t1 MTR_1g492640 24.201 219 150 6 2 215 33 240 2.60e-11 64.7
MS.gene72018.t1 MTR_4g104510 22.274 431 261 14 55 467 71 445 7.18e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72018.t1 AT1G10010 52.863 454 213 1 15 467 19 472 0.0 531
MS.gene72018.t1 AT1G10010 52.863 454 213 1 15 467 18 471 0.0 531
MS.gene72018.t1 AT1G58360 53.187 455 212 1 14 467 26 480 0.0 521
MS.gene72018.t1 AT5G49630 52.083 480 217 5 1 468 1 479 8.72e-179 509
MS.gene72018.t1 AT5G09220 50.664 452 220 2 18 467 39 489 4.52e-169 485
MS.gene72018.t1 AT5G63850 50.000 452 223 2 18 467 12 462 4.89e-164 471
MS.gene72018.t1 AT1G44100 48.401 469 228 3 9 467 12 476 2.03e-163 470
MS.gene72018.t1 AT1G77380 49.231 455 229 2 14 467 19 472 7.30e-160 461
MS.gene72018.t1 AT5G23810 44.820 444 236 4 20 457 21 461 1.82e-124 370
MS.gene72018.t1 AT5G23810 46.789 327 168 3 20 343 21 344 1.44e-96 295
MS.gene72018.t1 AT5G23810 44.118 238 127 3 20 254 21 255 2.16e-60 199
MS.gene72018.t1 AT5G23810 48.168 191 96 2 20 207 21 211 1.03e-52 177
MS.gene72018.t1 AT5G23810 48.168 191 96 2 20 207 21 211 1.03e-52 177
MS.gene72018.t1 AT1G24400 26.638 473 303 11 1 467 6 440 9.57e-40 149
MS.gene72018.t1 AT1G48640 26.824 466 288 14 14 467 28 452 9.83e-37 140
MS.gene72018.t1 AT5G40780 24.736 473 310 13 2 467 12 445 1.67e-36 140
MS.gene72018.t1 AT1G61270 27.527 465 290 11 5 454 2 434 5.14e-36 139
MS.gene72018.t1 AT1G67640 26.415 477 304 11 1 467 1 440 1.58e-35 137
MS.gene72018.t1 AT1G71680 26.392 485 293 12 2 467 8 447 5.19e-35 136
MS.gene72018.t1 AT3G01760 27.679 448 286 12 24 466 31 445 2.02e-34 134
MS.gene72018.t1 AT5G40780 24.942 433 284 11 40 467 1 397 3.37e-34 132
MS.gene72018.t1 AT5G40780 24.942 433 284 11 40 467 1 397 3.37e-34 132
MS.gene72018.t1 AT1G71680 28.375 363 206 10 2 342 8 338 6.84e-33 128
MS.gene72018.t1 AT1G25530 27.902 448 284 12 24 467 27 439 1.38e-31 126
MS.gene72018.t1 AT1G08230 25.259 483 310 16 1 467 1 448 6.83e-25 107
MS.gene72018.t1 AT5G41800 23.128 454 308 11 23 467 25 446 4.07e-20 93.2
MS.gene72018.t1 AT3G55740 22.782 417 278 12 55 467 60 436 3.84e-16 80.9
MS.gene72018.t1 AT3G55740 22.782 417 278 12 55 467 4 380 7.03e-16 79.7
MS.gene72018.t1 AT3G55740 22.782 417 278 12 55 467 4 380 7.03e-16 79.7
MS.gene72018.t1 AT2G39890 23.741 417 274 14 55 467 63 439 1.13e-15 79.3
MS.gene72018.t1 AT2G39890 23.741 417 274 14 55 467 63 439 1.13e-15 79.3
MS.gene72018.t1 AT2G39890 23.741 417 274 14 55 467 4 380 1.78e-15 78.6
MS.gene72018.t1 AT1G08230 26.562 320 196 11 160 467 56 348 4.20e-15 77.0
MS.gene72018.t1 AT1G08230 26.562 320 196 11 160 467 37 329 6.00e-15 76.3
MS.gene72018.t1 AT1G08230 26.562 320 196 11 160 467 37 329 6.00e-15 76.3
MS.gene72018.t1 AT1G08230 26.562 320 196 11 160 467 37 329 6.00e-15 76.3
MS.gene72018.t1 AT2G36590 22.043 372 250 10 55 424 57 390 2.73e-13 72.0
MS.gene72018.t1 AT4G35180 24.380 484 282 17 19 467 42 476 4.14e-12 68.6

Find 104 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATATCAATGTTAATTTA+TGG 0.100071 3.4:-95641006 None:intergenic
CCCTTCTGGTTGGTTGCTTT+GGG 0.120510 3.4:+95642054 MS.gene72018:CDS
AATGTTAATTTATGGAAATT+TGG 0.155373 3.4:-95640998 None:intergenic
TCAACTTATTTAGACTAATT+TGG 0.167184 3.4:+95642336 MS.gene72018:CDS
TGCTTGGAGCATTTGGATTT+TGG 0.172242 3.4:+95642429 MS.gene72018:CDS
GCCCTTCTGGTTGGTTGCTT+TGG 0.204187 3.4:+95642053 MS.gene72018:CDS
TATCAGAAGAAGACAAAATT+TGG 0.214366 3.4:+95641686 MS.gene72018:CDS
TTTCTCATCTGTGTGCTTTC+CGG 0.236560 3.4:-95641910 None:intergenic
GGGAACATCCTCACTGGTTT+TGG 0.241475 3.4:+95642021 MS.gene72018:CDS
CTTGCATTGCTTGGAGCATT+TGG 0.251558 3.4:+95642422 MS.gene72018:CDS
AATCCCTACATGCTCGGTTT+TGG 0.254191 3.4:+95640947 MS.gene72018:CDS
ATGTTAATTTATGGAAATTT+GGG 0.268174 3.4:-95640997 None:intergenic
AAAACTTGCAATAAGCTTCA+TGG 0.288812 3.4:-95640919 None:intergenic
GAGGACAATATTTGTGATAA+TGG 0.301794 3.4:+95642358 MS.gene72018:CDS
GGAGAAAGAACCAGTTTGTT+TGG 0.303768 3.4:+95641643 MS.gene72018:CDS
ATTTCAACTATACGAAATAT+TGG 0.312065 3.4:-95642233 None:intergenic
GAGGAACACCCAAACAAAAT+TGG 0.316656 3.4:+95642296 MS.gene72018:CDS
CCATATGGTAGGAGCATATC+AGG 0.321505 3.4:+95642095 MS.gene72018:CDS
GTTGCTGCAATTACCTCTTT+TGG 0.324708 3.4:+95641031 MS.gene72018:CDS
AATATTTCGTATAGTTGAAA+TGG 0.334003 3.4:+95642235 MS.gene72018:CDS
GCTGCAGTTGGTTCCATTCA+TGG 0.337754 3.4:+95642572 MS.gene72018:CDS
CTCTTGCCATTAACCGAGTC+TGG 0.346028 3.4:-95640206 None:intergenic
AACGAGTTTCTTGCATTGCT+TGG 0.351193 3.4:+95642413 MS.gene72018:CDS
AGATATCCAGACTCGGTTAA+TGG 0.352529 3.4:+95640200 MS.gene72018:CDS
TCACTTGGCTATGCTGCATT+TGG 0.358697 3.4:+95641985 MS.gene72018:CDS
TATCTAAATGGAGGCTGAAA+AGG 0.368758 3.4:+95639335 None:intergenic
TACTGTTGTCTATGATATAA+TGG 0.373164 3.4:+95641756 MS.gene72018:CDS
ATGAGAAAGGCAAATGTGTT+GGG 0.381443 3.4:+95641925 MS.gene72018:CDS
ATTGTAAGTGTAAATAGAAA+TGG 0.388984 3.4:-95640159 None:intergenic
TACTTTGGTTCCAAACAAAC+TGG 0.405444 3.4:-95641653 None:intergenic
TGATAACCCTGGTCCTACTT+TGG 0.415696 3.4:-95641668 None:intergenic
ATTCTTACTAATTCCATGAA+TGG 0.418096 3.4:-95642585 None:intergenic
TCTCTAGCAGTTGTGGTGTC+AGG 0.423733 3.4:+95641079 MS.gene72018:CDS
CCTGATATGCTCCTACCATA+TGG 0.439103 3.4:-95642095 None:intergenic
GGTGGTGGGTGCAGGAGTGT+TGG 0.440169 3.4:+95640070 MS.gene72018:CDS
CAGGAGTGTTGGCTCTAGCA+TGG 0.444476 3.4:+95640081 MS.gene72018:CDS
AACAAACAAGACTCAATAGT+TGG 0.446187 3.4:-95642532 None:intergenic
TTCCTCCTATGTGGTTCACT+TGG 0.448096 3.4:+95641970 MS.gene72018:CDS
GCATTTGGTGATCACACTCC+AGG 0.452200 3.4:+95642000 MS.gene72018:CDS
ATAACAGTGGTGGTGGGTGC+AGG 0.463122 3.4:+95640062 MS.gene72018:CDS
GGTTATGCATTAATTGGAAG+TGG 0.469904 3.4:+95641052 MS.gene72018:CDS
ATATTTCGTATAGTTGAAAT+GGG 0.469932 3.4:+95642236 MS.gene72018:CDS
GAGAGATGTGCATTTGTATC+GGG 0.470377 3.4:-95642469 None:intergenic
GACGGAAGAATCAAGAGAAC+CGG 0.473000 3.4:+95639399 MS.gene72018:CDS
TGAGAGATGTGCATTTGTAT+CGG 0.473205 3.4:-95642470 None:intergenic
AGTTTGTTTGGAACCAAAGT+AGG 0.474169 3.4:+95641655 MS.gene72018:CDS
ATTCAGTATGGGAAACTCGC+TGG 0.477343 3.4:+95640502 MS.gene72018:CDS
TGTATGCATTATAGTCCATA+TGG 0.479211 3.4:+95642080 MS.gene72018:CDS
TCAAATAATCCCTACATGCT+CGG 0.484226 3.4:+95640941 MS.gene72018:CDS
ATCTAAATGGAGGCTGAAAA+GGG 0.484463 3.4:+95639336 None:intergenic
GCGTTCATCTTTCATAAATG+AGG 0.484830 3.4:+95642277 MS.gene72018:CDS
CCTTCTGGTTGGTTGCTTTG+GGG 0.485026 3.4:+95642055 MS.gene72018:CDS
GTTTCAGTAGCTGCTGCAGT+TGG 0.487316 3.4:+95642560 MS.gene72018:CDS
ATCCCAAAACCGAGCATGTA+GGG 0.490118 3.4:-95640950 None:intergenic
CTCATCTGTGTGCTTTCCGG+TGG 0.491821 3.4:-95641907 None:intergenic
GCAAGAAACTCGTTGAAGAA+TGG 0.506573 3.4:-95642404 None:intergenic
AATTAATGCATAACCAAAAG+AGG 0.512333 3.4:-95641044 None:intergenic
ACAGTACTCAAATGAGGAAG+TGG 0.516285 3.4:+95639371 MS.gene72018:CDS
GATGAGAAAGGCAAATGTGT+TGG 0.517908 3.4:+95641924 MS.gene72018:CDS
TGGACTCTCTCTAGCAGTTG+TGG 0.531790 3.4:+95641072 MS.gene72018:CDS
GAGAAATTACACTTATATGC+AGG 0.536730 3.4:+95640226 MS.gene72018:CDS
TTCAGTATGGGAAACTCGCT+GGG 0.539810 3.4:+95640503 MS.gene72018:CDS
GCATGGGCAATTTCTCAACT+AGG 0.542467 3.4:+95640098 MS.gene72018:CDS
TCTCAACTAGGATGGATAGC+TGG 0.542950 3.4:+95640110 MS.gene72018:CDS
ACACATAATAACAGTGGTGG+TGG 0.543885 3.4:+95640055 MS.gene72018:CDS
ACTTATTTAGACTAATTTGG+AGG 0.544065 3.4:+95642339 MS.gene72018:CDS
TTTGTGGATTGATTCAGTAT+GGG 0.545041 3.4:+95640491 MS.gene72018:CDS
TACATTAAAGTCAAATCCAC+CGG 0.552765 3.4:+95641891 MS.gene72018:CDS
TTTGGAACCAAAGTAGGACC+AGG 0.554273 3.4:+95641661 MS.gene72018:CDS
TTGTCTTCTTCTGATAACCC+TGG 0.555389 3.4:-95641679 None:intergenic
CCCCAAAGCAACCAACCAGA+AGG 0.561618 3.4:-95642055 None:intergenic
GGGCAATTTCTCAACTAGGA+TGG 0.565746 3.4:+95640102 MS.gene72018:CDS
GGAAAGCACACAGATGAGAA+AGG 0.569880 3.4:+95641912 MS.gene72018:CDS
TATCAAACAGTACTCAAATG+AGG 0.572155 3.4:+95639365 MS.gene72018:CDS
AAACCAGTGAGGATGTTCCC+TGG 0.577786 3.4:-95642018 None:intergenic
TATACCTAGGTAAGCATGAA+CGG 0.581147 3.4:-95640249 None:intergenic
GGTTGCAGGGAACGTGTTGA+CGG 0.584738 3.4:+95640025 MS.gene72018:intron
TTTGAGACAATAAAATCTGA+AGG 0.587153 3.4:-95640973 None:intergenic
AGGAGTGTTGGCTCTAGCAT+GGG 0.591346 3.4:+95640082 MS.gene72018:CDS
GATCCCAAAACCGAGCATGT+AGG 0.597152 3.4:-95640951 None:intergenic
CACATAATAACAGTGGTGGT+GGG 0.606869 3.4:+95640056 MS.gene72018:CDS
ACTCCAGGGAACATCCTCAC+TGG 0.606948 3.4:+95642015 MS.gene72018:CDS
AATGAGGAAGTGGATGATGA+CGG 0.608436 3.4:+95639381 MS.gene72018:CDS
TATAACTTGCTCTACAAGCA+TGG 0.608733 3.4:+95640543 MS.gene72018:CDS
CATAGCCAAGTGAACCACAT+AGG 0.609497 3.4:-95641975 None:intergenic
AAACTCGCTGGGATTACAGT+GGG 0.611394 3.4:+95640514 MS.gene72018:CDS
AGCCAAGTGAACCACATAGG+AGG 0.616311 3.4:-95641972 None:intergenic
CCCAAAGCAACCAACCAGAA+GGG 0.617292 3.4:-95642054 None:intergenic
CAGGCCGTTCATGCTTACCT+AGG 0.625589 3.4:+95640245 MS.gene72018:CDS
AATGGCCACAGTTATTGCCA+TGG 0.626509 3.4:+95642376 MS.gene72018:CDS
GTTGAAGAATGGCATTGCCA+TGG 0.631337 3.4:-95642393 None:intergenic
TGAGAAAGGCAAATGTGTTG+GGG 0.635338 3.4:+95641926 MS.gene72018:CDS
TGCATTATAGTCCATATGGT+AGG 0.648433 3.4:+95642084 MS.gene72018:CDS
ATCGGGAAGAAGACAATGAG+TGG 0.651715 3.4:-95642452 None:intergenic
CATTTGGTGATCACACTCCA+GGG 0.652654 3.4:+95642001 MS.gene72018:CDS
AAATGGGTGCTAACATGATG+TGG 0.654451 3.4:+95642252 MS.gene72018:CDS
TTGGAACCAAAGTAGGACCA+GGG 0.663393 3.4:+95641662 MS.gene72018:CDS
TTGTTATAGATATCCAGACT+CGG 0.668178 3.4:+95640193 MS.gene72018:CDS
CATAAAATCCAAAACCAGTG+AGG 0.669591 3.4:-95642029 None:intergenic
AACACACATAATAACAGTGG+TGG 0.670192 3.4:+95640052 MS.gene72018:CDS
GAAACTCGCTGGGATTACAG+TGG 0.694611 3.4:+95640513 MS.gene72018:CDS
AACAACACACATAATAACAG+TGG 0.695542 3.4:+95640049 MS.gene72018:CDS
CATTGCCATGGCAATAACTG+TGG 0.713530 3.4:-95642381 None:intergenic
TCATTTATGAAAGATGAACG+CGG 0.742748 3.4:-95642275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTATATATATTAGATT+AGG - chr3.4:95641473-95641492 None:intergenic 10.0%
!! AATGTTAATTTATGGAAATT+TGG - chr3.4:95641001-95641020 None:intergenic 15.0%
!! AGTATATTTGATGTATTTAA+TGG + chr3.4:95639974-95639993 MS.gene72018:intron 15.0%
!! ATATATATTAAACTGTTTGA+TGG + chr3.4:95641202-95641221 MS.gene72018:intron 15.0%
!! ATATATATTTCATACAATTC+TGG - chr3.4:95641190-95641209 None:intergenic 15.0%
!! ATGTATTTAATGGAAATAAT+TGG + chr3.4:95639984-95640003 MS.gene72018:intron 15.0%
!! ATGTTAATTTATGGAAATTT+GGG - chr3.4:95641000-95641019 None:intergenic 15.0%
!! CTAATATATATAGAAAACTT+GGG + chr3.4:95641476-95641495 MS.gene72018:intron 15.0%
!! TAATATATATAGAAAACTTG+GGG + chr3.4:95641477-95641496 MS.gene72018:intron 15.0%
!! TCTAATATATATAGAAAACT+TGG + chr3.4:95641475-95641494 MS.gene72018:intron 15.0%
!! TTGATATCAATGTTAATTTA+TGG - chr3.4:95641009-95641028 None:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG - chr3.4:95641559-95641578 None:intergenic 15.0%
!!! ACTTTTTCATTAATTTTTGT+TGG + chr3.4:95639777-95639796 MS.gene72018:intron 15.0%
!!! CTTTTTCATTAATTTTTGTT+GGG + chr3.4:95639778-95639797 MS.gene72018:intron 15.0%
!!! TCTAATCTATGTTTTTATTT+AGG + chr3.4:95641867-95641886 MS.gene72018:intron 15.0%
!! AATATATATAGAAAACTTGG+GGG + chr3.4:95641478-95641497 MS.gene72018:intron 20.0%
!! AATATTTCGTATAGTTGAAA+TGG + chr3.4:95642235-95642254 MS.gene72018:CDS 20.0%
!! ACAACATATATTCCAATTAT+TGG + chr3.4:95641544-95641563 MS.gene72018:intron 20.0%
!! ATAGCATAAGTTAGTAAATA+TGG - chr3.4:95639852-95639871 None:intergenic 20.0%
!! ATATAAGATATAAGTGATGA+AGG - chr3.4:95641110-95641129 None:intergenic 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG + chr3.4:95642236-95642255 MS.gene72018:CDS 20.0%
!! ATGGTAGTATATAATAATGT+CGG - chr3.4:95639623-95639642 None:intergenic 20.0%
!! ATTGTAAGTGTAAATAGAAA+TGG - chr3.4:95640162-95640181 None:intergenic 20.0%
!! ATTTCAACTATACGAAATAT+TGG - chr3.4:95642236-95642255 None:intergenic 20.0%
!! GAAAAAAATAAAGAAAGAGA+TGG + chr3.4:95641367-95641386 MS.gene72018:intron 20.0%
!! TAAAAGAAAACATCTTTCAA+AGG - chr3.4:95639579-95639598 None:intergenic 20.0%
!! TCAAATAGTTATGAAAAAGA+TGG + chr3.4:95639537-95639556 MS.gene72018:intron 20.0%
!! TCAACTTATTTAGACTAATT+TGG + chr3.4:95642336-95642355 MS.gene72018:CDS 20.0%
!! TGTATTTATGATATATACCT+AGG - chr3.4:95640265-95640284 None:intergenic 20.0%
!! TTCCAATTATGTATTTACTA+AGG + chr3.4:95641596-95641615 MS.gene72018:intron 20.0%
!!! AAAAGTGTATTTGAAAGAAA+AGG - chr3.4:95639763-95639782 None:intergenic 20.0%
!!! TATGTAGTTTGTTTTTCTTA+CGG - chr3.4:95641413-95641432 None:intergenic 20.0%
!!! TTCTATTAATCAATTTGTTG+AGG - chr3.4:95640670-95640689 None:intergenic 20.0%
! AAAATAAAGAAAGAGATGGA+AGG + chr3.4:95641371-95641390 MS.gene72018:intron 25.0%
! AAATAAAGAAAGAGATGGAA+GGG + chr3.4:95641372-95641391 MS.gene72018:intron 25.0%
! AACAAAATATTAACAACCAG+TGG + chr3.4:95641136-95641155 MS.gene72018:intron 25.0%
! AAGTTGACAATTTCAATAGA+TGG - chr3.4:95639642-95639661 None:intergenic 25.0%
! AATTAATGCATAACCAAAAG+AGG - chr3.4:95641047-95641066 None:intergenic 25.0%
! ACTTATTTAGACTAATTTGG+AGG + chr3.4:95642339-95642358 MS.gene72018:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG - chr3.4:95642588-95642607 None:intergenic 25.0%
! ATTTGGAAAATCTAATCTTC+AGG + chr3.4:95639825-95639844 MS.gene72018:intron 25.0%
! CAAATATACTAGTATCTAAC+TGG - chr3.4:95639964-95639983 None:intergenic 25.0%
! GAAGTATAAAAATGTAGACT+TGG + chr3.4:95641804-95641823 MS.gene72018:intron 25.0%
! TACTGTTGTCTATGATATAA+TGG + chr3.4:95641756-95641775 MS.gene72018:CDS 25.0%
! TATCAGAAGAAGACAAAATT+TGG + chr3.4:95641686-95641705 MS.gene72018:CDS 25.0%
! TGAAAATTTCAATGCATTCA+AGG - chr3.4:95640642-95640661 None:intergenic 25.0%
! TGCCTTAGTAAATACATAAT+TGG - chr3.4:95641601-95641620 None:intergenic 25.0%
! TGGAAATAATTGGATTTGAA+TGG + chr3.4:95639994-95640013 MS.gene72018:intron 25.0%
! TGGAATATATGTTGTTAACA+GGG - chr3.4:95641539-95641558 None:intergenic 25.0%
! TTAGAGATAACTGATATCAA+TGG - chr3.4:95641852-95641871 None:intergenic 25.0%
! TTGGAATATATGTTGTTAAC+AGG - chr3.4:95641540-95641559 None:intergenic 25.0%
!! AAGAACATATGATTCTGAAA+TGG - chr3.4:95639483-95639502 None:intergenic 25.0%
!! ACTGGTTGTTAATATTTTGT+TGG - chr3.4:95641137-95641156 None:intergenic 25.0%
!! ATCTTGAAATATTTTCTTGG+GGG + chr3.4:95641162-95641181 MS.gene72018:intron 25.0%
!! GATCTTGAAATATTTTCTTG+GGG + chr3.4:95641161-95641180 MS.gene72018:intron 25.0%
!! GGATCTTGAAATATTTTCTT+GGG + chr3.4:95641160-95641179 MS.gene72018:intron 25.0%
!! GTTGTTAATATTTTGTTGGA+AGG - chr3.4:95641133-95641152 None:intergenic 25.0%
!! TAAACAGATTTTCATTGAAG+TGG + chr3.4:95642501-95642520 MS.gene72018:CDS 25.0%
!! TTTGAGACAATAAAATCTGA+AGG - chr3.4:95640976-95640995 None:intergenic 25.0%
!!! ATGTAGTTTGTTTTTCTTAC+GGG - chr3.4:95641412-95641431 None:intergenic 25.0%
!!! TCTTTTGGTTATGCATTAAT+TGG + chr3.4:95641046-95641065 MS.gene72018:CDS 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG + chr3.4:95641605-95641624 MS.gene72018:intron 25.0%
!!! TTGATTAACCAGAGTATTTT+TGG + chr3.4:95640580-95640599 MS.gene72018:intron 25.0%
AAAACTTGCAATAAGCTTCA+TGG - chr3.4:95640922-95640941 None:intergenic 30.0%
AAAATATTAACAACCAGTGG+CGG + chr3.4:95641139-95641158 MS.gene72018:intron 30.0%
AACAAACAAGACTCAATAGT+TGG - chr3.4:95642535-95642554 None:intergenic 30.0%
AACAACACACATAATAACAG+TGG + chr3.4:95640049-95640068 MS.gene72018:CDS 30.0%
AATCAAGCAAAATAAACCAC+TGG - chr3.4:95641251-95641270 None:intergenic 30.0%
ACGTCATGAAAGAAAATAAG+AGG - chr3.4:95639730-95639749 None:intergenic 30.0%
GAAACATCATAATGGTTAAC+TGG + chr3.4:95641224-95641243 MS.gene72018:intron 30.0%
GAATGTTGATATAATGTTGC+AGG + chr3.4:95642199-95642218 MS.gene72018:intron 30.0%
GAGAAATTACACTTATATGC+AGG + chr3.4:95640226-95640245 MS.gene72018:CDS 30.0%
GAGGACAATATTTGTGATAA+TGG + chr3.4:95642358-95642377 MS.gene72018:CDS 30.0%
GGAATATATGTTGTTAACAG+GGG - chr3.4:95641538-95641557 None:intergenic 30.0%
GTTGAAGGAGTAATAGAATT+TGG + chr3.4:95639808-95639827 MS.gene72018:intron 30.0%
GTTTGATGGAAACATCATAA+TGG + chr3.4:95641216-95641235 MS.gene72018:intron 30.0%
TACATTAAAGTCAAATCCAC+CGG + chr3.4:95641891-95641910 MS.gene72018:CDS 30.0%
TATCAAACAGTACTCAAATG+AGG + chr3.4:95639365-95639384 MS.gene72018:CDS 30.0%
TCATTTATGAAAGATGAACG+CGG - chr3.4:95642278-95642297 None:intergenic 30.0%
TGTATGCATTATAGTCCATA+TGG + chr3.4:95642080-95642099 MS.gene72018:CDS 30.0%
TTCAAAAAAAAGCTCTTACG+CGG - chr3.4:95641327-95641346 None:intergenic 30.0%
TTGTTATAGATATCCAGACT+CGG + chr3.4:95640193-95640212 MS.gene72018:CDS 30.0%
! CGGATCTTGAAATATTTTCT+TGG + chr3.4:95641159-95641178 MS.gene72018:intron 30.0%
! TCTAAACACTAGTTCTTAGT+CGG - chr3.4:95641445-95641464 None:intergenic 30.0%
! TTTGTGGATTGATTCAGTAT+GGG + chr3.4:95640491-95640510 MS.gene72018:CDS 30.0%
! TTTTCTTTCATGACGTCAAA+CGG + chr3.4:95639734-95639753 MS.gene72018:intron 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG - chr3.4:95642307-95642326 None:intergenic 30.0%
!! TTGATTTGCTTCCACAAAAA+TGG + chr3.4:95640896-95640915 MS.gene72018:CDS 30.0%
!! TTTAGCGTTGACAAAAATAG+TGG - chr3.4:95640404-95640423 None:intergenic 30.0%
!! TTTTGTGGATTGATTCAGTA+TGG + chr3.4:95640490-95640509 MS.gene72018:CDS 30.0%
!!! TGTAGTTTGTTTTTCTTACG+GGG - chr3.4:95641411-95641430 None:intergenic 30.0%
!!! TTTTAGGACCAAAAATACTC+TGG - chr3.4:95640591-95640610 None:intergenic 30.0%
AACACACATAATAACAGTGG+TGG + chr3.4:95640052-95640071 MS.gene72018:CDS 35.0%
AGAGATGCTGAAGTTATAAC+TGG - chr3.4:95639447-95639466 None:intergenic 35.0%
ATATATGTTGTTAACAGGGG+CGG - chr3.4:95641535-95641554 None:intergenic 35.0%
ATGAGAAAGGCAAATGTGTT+GGG + chr3.4:95641925-95641944 MS.gene72018:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG - chr3.4:95642032-95642051 None:intergenic 35.0%
CCTAATTTATACATGTGGCA+GGG + chr3.4:95640862-95640881 MS.gene72018:intron 35.0%
CCTGCCACATGTATAAATTA+GGG - chr3.4:95640864-95640883 None:intergenic 35.0%
CTGCCACATGTATAAATTAG+GGG - chr3.4:95640863-95640882 None:intergenic 35.0%
GCGTTCATCTTTCATAAATG+AGG + chr3.4:95642277-95642296 MS.gene72018:CDS 35.0%
GGTTATGCATTAATTGGAAG+TGG + chr3.4:95641052-95641071 MS.gene72018:CDS 35.0%
GTTCCACCTAATGACAAAAT+GGG - chr3.4:95640460-95640479 None:intergenic 35.0%
TATACCTAGGTAAGCATGAA+CGG - chr3.4:95640252-95640271 None:intergenic 35.0%
TCAAATAATCCCTACATGCT+CGG + chr3.4:95640941-95640960 MS.gene72018:CDS 35.0%
TGAGAGATGTGCATTTGTAT+CGG - chr3.4:95642473-95642492 None:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG + chr3.4:95642084-95642103 MS.gene72018:CDS 35.0%
TGCCACATGTATAAATTAGG+GGG - chr3.4:95640862-95640881 None:intergenic 35.0%
TGTTCCACCTAATGACAAAA+TGG - chr3.4:95640461-95640480 None:intergenic 35.0%
! ACAATACTTTTCCTCCTATG+TGG + chr3.4:95641961-95641980 MS.gene72018:CDS 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG + chr3.4:95641655-95641674 MS.gene72018:CDS 35.0%
! CAACCTCACTCACATATTTT+AGG - chr3.4:95640607-95640626 None:intergenic 35.0%
! GGAACAATGCACATATTTTG+TGG + chr3.4:95640475-95640494 MS.gene72018:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG - chr3.4:95642308-95642327 None:intergenic 35.0%
! TACTTTGGTTCCAAACAAAC+TGG - chr3.4:95641656-95641675 None:intergenic 35.0%
! TAGTTGCCCATTTTGTCATT+AGG + chr3.4:95640451-95640470 MS.gene72018:intron 35.0%
! TTGTTGGGATTGTAAGTTGA+AGG + chr3.4:95639793-95639812 MS.gene72018:intron 35.0%
!! AACTGATATCAATGGACTAG+TGG - chr3.4:95641844-95641863 None:intergenic 35.0%
!! AGTGCAATTTTAGCGTGAAT+CGG - chr3.4:95640356-95640375 None:intergenic 35.0%
!! TATAACTTGCTCTACAAGCA+TGG + chr3.4:95640543-95640562 MS.gene72018:CDS 35.0%
!!! GTAGTTTGTTTTTCTTACGG+GGG - chr3.4:95641410-95641429 None:intergenic 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG + chr3.4:95641706-95641725 MS.gene72018:CDS 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG + chr3.4:95641705-95641724 MS.gene72018:CDS 35.0%
AAAGAAAGAGATGGAAGGGT+CGG + chr3.4:95641376-95641395 MS.gene72018:intron 40.0%
AAATGGGTGCTAACATGATG+TGG + chr3.4:95642252-95642271 MS.gene72018:CDS 40.0%
AACGAGTTTCTTGCATTGCT+TGG + chr3.4:95642413-95642432 MS.gene72018:CDS 40.0%
AATATTTCAAGATCCGCCAC+TGG - chr3.4:95641155-95641174 None:intergenic 40.0%
AATGAGGAAGTGGATGATGA+CGG + chr3.4:95639381-95639400 MS.gene72018:CDS 40.0%
ACACATAATAACAGTGGTGG+TGG + chr3.4:95640055-95640074 MS.gene72018:CDS 40.0%
ACAGTACTCAAATGAGGAAG+TGG + chr3.4:95639371-95639390 MS.gene72018:CDS 40.0%
ATAATGGTTAACTGGTCCAG+TGG + chr3.4:95641232-95641251 MS.gene72018:intron 40.0%
ATGTATAAATTAGGGGGGGT+GGG - chr3.4:95640856-95640875 None:intergenic 40.0%
CACATAATAACAGTGGTGGT+GGG + chr3.4:95640056-95640075 MS.gene72018:CDS 40.0%
CCACATGTATAAATTAGGGG+GGG - chr3.4:95640860-95640879 None:intergenic 40.0%
CCCTAATTTATACATGTGGC+AGG + chr3.4:95640861-95640880 MS.gene72018:intron 40.0%
CCCTGCCACATGTATAAATT+AGG - chr3.4:95640865-95640884 None:intergenic 40.0%
GAGAGATGTGCATTTGTATC+GGG - chr3.4:95642472-95642491 None:intergenic 40.0%
GAGGAACACCCAAACAAAAT+TGG + chr3.4:95642296-95642315 MS.gene72018:CDS 40.0%
GATAGAGAAAGCAAGCTTAC+CGG - chr3.4:95639421-95639440 None:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG + chr3.4:95641924-95641943 MS.gene72018:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG - chr3.4:95642407-95642426 None:intergenic 40.0%
GCCACATGTATAAATTAGGG+GGG - chr3.4:95640861-95640880 None:intergenic 40.0%
GGTCCTAAAATATGTGAGTG+AGG + chr3.4:95640601-95640620 MS.gene72018:intron 40.0%
TGAGAAAGGCAAATGTGTTG+GGG + chr3.4:95641926-95641945 MS.gene72018:CDS 40.0%
TGAGTGAGGTTGTATTACTG+TGG + chr3.4:95640615-95640634 MS.gene72018:intron 40.0%
TGGATTTGAATGGATGCTTG+TGG + chr3.4:95640004-95640023 MS.gene72018:intron 40.0%
TTGTCTTCTTCTGATAACCC+TGG - chr3.4:95641682-95641701 None:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG - chr3.4:95641913-95641932 None:intergenic 40.0%
! AGATATCCAGACTCGGTTAA+TGG + chr3.4:95640200-95640219 MS.gene72018:CDS 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG + chr3.4:95642044-95642063 MS.gene72018:CDS 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG + chr3.4:95641643-95641662 MS.gene72018:CDS 40.0%
! GTTGCTGCAATTACCTCTTT+TGG + chr3.4:95641031-95641050 MS.gene72018:CDS 40.0%
! TTGCCCATTTTGTCATTAGG+TGG + chr3.4:95640454-95640473 MS.gene72018:intron 40.0%
! TTGGATTTTATGAGCCCTTC+TGG + chr3.4:95642040-95642059 MS.gene72018:CDS 40.0%
! TTTTGCTTGATTGCAGAGCA+AGG + chr3.4:95641259-95641278 MS.gene72018:intron 40.0%
!! GTGCAATTTTAGCGTGAATC+GGG - chr3.4:95640355-95640374 None:intergenic 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG + chr3.4:95642429-95642448 MS.gene72018:CDS 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG + chr3.4:95641622-95641641 MS.gene72018:intron 40.0%
!!! AAGCTTCATGGCCATTTTTG+TGG - chr3.4:95640910-95640929 None:intergenic 40.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG + chr3.4:95641616-95641635 MS.gene72018:intron 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG + chr3.4:95641617-95641636 MS.gene72018:intron 40.0%
AAACTCGCTGGGATTACAGT+GGG + chr3.4:95640514-95640533 MS.gene72018:CDS 45.0%
AATGGATGCTTGTGGTTGCA+GGG + chr3.4:95640012-95640031 MS.gene72018:intron 45.0%
AATGGCCACAGTTATTGCCA+TGG + chr3.4:95642376-95642395 MS.gene72018:CDS 45.0%
ATCCCAAAACCGAGCATGTA+GGG - chr3.4:95640953-95640972 None:intergenic 45.0%
ATCGGGAAGAAGACAATGAG+TGG - chr3.4:95642455-95642474 None:intergenic 45.0%
ATTCAGTATGGGAAACTCGC+TGG + chr3.4:95640502-95640521 MS.gene72018:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG - chr3.4:95641978-95641997 None:intergenic 45.0%
CATGTATAAATTAGGGGGGG+TGG - chr3.4:95640857-95640876 None:intergenic 45.0%
CATTGCCATGGCAATAACTG+TGG - chr3.4:95642384-95642403 None:intergenic 45.0%
CCCCCCCTAATTTATACATG+TGG + chr3.4:95640857-95640876 MS.gene72018:intron 45.0%
CCCTCAAGTCGGATAAATGT+GGG - chr3.4:95640310-95640329 None:intergenic 45.0%
CCTGATATGCTCCTACCATA+TGG - chr3.4:95642098-95642117 None:intergenic 45.0%
GACGGAAGAATCAAGAGAAC+CGG + chr3.4:95639399-95639418 MS.gene72018:CDS 45.0%
GACTTGAGGGATTAATTGCG+CGG + chr3.4:95640320-95640339 MS.gene72018:intron 45.0%
GCATGGGCAATTTCTCAACT+AGG + chr3.4:95640098-95640117 MS.gene72018:CDS 45.0%
GCGCAATTAATCCCTCAAGT+CGG - chr3.4:95640321-95640340 None:intergenic 45.0%
GGGCAATTTCTCAACTAGGA+TGG + chr3.4:95640102-95640121 MS.gene72018:CDS 45.0%
GTTGAAGAATGGCATTGCCA+TGG - chr3.4:95642396-95642415 None:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG + chr3.4:95641985-95642004 MS.gene72018:CDS 45.0%
TCCCTCAAGTCGGATAAATG+TGG - chr3.4:95640311-95640330 None:intergenic 45.0%
TCTCAACTAGGATGGATAGC+TGG + chr3.4:95640110-95640129 MS.gene72018:CDS 45.0%
TGATAACCCTGGTCCTACTT+TGG - chr3.4:95641671-95641690 None:intergenic 45.0%
TGTATAAATTAGGGGGGGTG+GGG - chr3.4:95640855-95640874 None:intergenic 45.0%
TTCAGTATGGGAAACTCGCT+GGG + chr3.4:95640503-95640522 MS.gene72018:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG + chr3.4:95641970-95641989 MS.gene72018:CDS 45.0%
TTGGAACCAAAGTAGGACCA+GGG + chr3.4:95641662-95641681 MS.gene72018:CDS 45.0%
! AATCCCTACATGCTCGGTTT+TGG + chr3.4:95640947-95640966 MS.gene72018:CDS 45.0%
! ATCCCTACATGCTCGGTTTT+GGG + chr3.4:95640948-95640967 MS.gene72018:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG + chr3.4:95642001-95642020 MS.gene72018:CDS 45.0%
! CCATATGGTAGGAGCATATC+AGG + chr3.4:95642095-95642114 MS.gene72018:CDS 45.0%
! CCCACATTTATCCGACTTGA+GGG + chr3.4:95640307-95640326 MS.gene72018:intron 45.0%
! CTTGCATTGCTTGGAGCATT+TGG + chr3.4:95642422-95642441 MS.gene72018:CDS 45.0%
! GGAAAGCACACAGATGAGAA+AGG + chr3.4:95641912-95641931 MS.gene72018:CDS 45.0%
! TCCCACATTTATCCGACTTG+AGG + chr3.4:95640306-95640325 MS.gene72018:intron 45.0%
! TTTGGAACCAAAGTAGGACC+AGG + chr3.4:95641661-95641680 MS.gene72018:CDS 45.0%
!! TAGAAAACTTGGGGGTACCA+TGG + chr3.4:95641486-95641505 MS.gene72018:intron 45.0%
!!! TCTTTTAAAATAATTTATTT+TGG + chr3.4:95639592-95639611 MS.gene72018:intron 5.0%
AAACCAGTGAGGATGTTCCC+TGG - chr3.4:95642021-95642040 None:intergenic 50.0%
AGCCAAGTGAACCACATAGG+AGG - chr3.4:95641975-95641994 None:intergenic 50.0%
ATTGCAGAGCAAGGAGAGCA+AGG + chr3.4:95641268-95641287 MS.gene72018:intron 50.0%
CCCAAAGCAACCAACCAGAA+GGG - chr3.4:95642057-95642076 None:intergenic 50.0%
CTCTTGCCATTAACCGAGTC+TGG - chr3.4:95640209-95640228 None:intergenic 50.0%
GAAACTCGCTGGGATTACAG+TGG + chr3.4:95640513-95640532 MS.gene72018:CDS 50.0%
GAATGGATGCTTGTGGTTGC+AGG + chr3.4:95640011-95640030 MS.gene72018:intron 50.0%
GATCCCAAAACCGAGCATGT+AGG - chr3.4:95640954-95640973 None:intergenic 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG + chr3.4:95642560-95642579 MS.gene72018:CDS 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG + chr3.4:95641079-95641098 MS.gene72018:CDS 50.0%
TGGACTCTCTCTAGCAGTTG+TGG + chr3.4:95641072-95641091 MS.gene72018:CDS 50.0%
TTGCAGAGCAAGGAGAGCAA+GGG + chr3.4:95641269-95641288 MS.gene72018:intron 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG + chr3.4:95642054-95642073 MS.gene72018:CDS 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG + chr3.4:95642055-95642074 MS.gene72018:CDS 50.0%
! CTAGTTCTTAGTCGGTGCAG+CGG - chr3.4:95641437-95641456 None:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG + chr3.4:95642000-95642019 MS.gene72018:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG + chr3.4:95642572-95642591 MS.gene72018:CDS 50.0%
!! AGGAGTGTTGGCTCTAGCAT+GGG + chr3.4:95640082-95640101 MS.gene72018:CDS 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG + chr3.4:95642021-95642040 MS.gene72018:CDS 50.0%
AACAGGGGCGGATCTTCCTT+GGG - chr3.4:95641523-95641542 None:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG + chr3.4:95642015-95642034 MS.gene72018:CDS 55.0%
AGGGTGCGGGTTCGAATCAA+GGG + chr3.4:95641288-95641307 MS.gene72018:intron 55.0%
CAGGCCGTTCATGCTTACCT+AGG + chr3.4:95640245-95640264 MS.gene72018:CDS 55.0%
CCCCAAAGCAACCAACCAGA+AGG - chr3.4:95642058-95642077 None:intergenic 55.0%
CTCATCTGTGTGCTTTCCGG+TGG - chr3.4:95641910-95641929 None:intergenic 55.0%
GGTTGCAGGGAACGTGTTGA+CGG + chr3.4:95640025-95640044 MS.gene72018:intron 55.0%
TAACAGGGGCGGATCTTCCT+TGG - chr3.4:95641524-95641543 None:intergenic 55.0%
! AAGGGTGCGGGTTCGAATCA+AGG + chr3.4:95641287-95641306 MS.gene72018:intron 55.0%
! CGGGTTCGAATCAAGGGTGT+GGG + chr3.4:95641294-95641313 MS.gene72018:intron 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG + chr3.4:95642053-95642072 MS.gene72018:CDS 55.0%
!! ATAACAGTGGTGGTGGGTGC+AGG + chr3.4:95640062-95640081 MS.gene72018:CDS 55.0%
!! CAGGAGTGTTGGCTCTAGCA+TGG + chr3.4:95640081-95640100 MS.gene72018:CDS 55.0%
GAGCAAGGAGAGCAAGGGTG+CGG + chr3.4:95641274-95641293 MS.gene72018:intron 60.0%
GCGGGTTCGAATCAAGGGTG+TGG + chr3.4:95641293-95641312 MS.gene72018:intron 60.0%
GGATCTTCCTTGGGACAGGC+AGG - chr3.4:95641514-95641533 None:intergenic 60.0%
! AGCAAGGAGAGCAAGGGTGC+GGG + chr3.4:95641275-95641294 MS.gene72018:intron 60.0%
ATTAGGGGGGGTGGGGTGAG+CGG - chr3.4:95640848-95640867 None:intergenic 65.0%
CATGGCACCTGCCTGTCCCA+AGG + chr3.4:95641504-95641523 MS.gene72018:intron 65.0%
CTTGGGACAGGCAGGTGCCA+TGG - chr3.4:95641506-95641525 None:intergenic 65.0%
GGGCGGATCTTCCTTGGGAC+AGG - chr3.4:95641518-95641537 None:intergenic 65.0%
!! GGTGGTGGGTGCAGGAGTGT+TGG + chr3.4:95640070-95640089 MS.gene72018:CDS 65.0%
TTAGGGGGGGTGGGGTGAGC+GGG - chr3.4:95640847-95640866 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 95639342 95642643 95639342 ID=MS.gene72018
chr3.4 mRNA 95639342 95642643 95639342 ID=MS.gene72018.t1;Parent=MS.gene72018
chr3.4 exon 95639342 95639420 95639342 ID=MS.gene72018.t1.exon1;Parent=MS.gene72018.t1
chr3.4 CDS 95639342 95639420 95639342 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95640033 95640266 95640033 ID=MS.gene72018.t1.exon2;Parent=MS.gene72018.t1
chr3.4 CDS 95640033 95640266 95640033 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95640473 95640566 95640473 ID=MS.gene72018.t1.exon3;Parent=MS.gene72018.t1
chr3.4 CDS 95640473 95640566 95640473 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95640883 95641100 95640883 ID=MS.gene72018.t1.exon4;Parent=MS.gene72018.t1
chr3.4 CDS 95640883 95641100 95640883 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95641638 95641777 95641638 ID=MS.gene72018.t1.exon5;Parent=MS.gene72018.t1
chr3.4 CDS 95641638 95641777 95641638 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95641889 95642116 95641889 ID=MS.gene72018.t1.exon6;Parent=MS.gene72018.t1
chr3.4 CDS 95641889 95642116 95641889 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
chr3.4 exon 95642221 95642643 95642221 ID=MS.gene72018.t1.exon7;Parent=MS.gene72018.t1
chr3.4 CDS 95642221 95642643 95642221 ID=cds.MS.gene72018.t1;Parent=MS.gene72018.t1
Gene Sequence

>MS.gene72018

ATGGAGGCTGAAAAGGGTGTGTCTATCAAACAGTACTCAAATGAGGAAGTGGATGATGACGGAAGAATCAAGAGAACCGGTAAGCTTGCTTTCTCTATCTTTCCAGTTATAACTTCAGCATCTCTTTTTCTTTTCTTGCCATTTCAGAATCATATGTTCTTTTCATATAATTTATGTGTTTTATGTCGTTGATACTCAAATAGTTATGAAAAAGATGGAAAAAAATTAAATGTTCCTTTGAAAGATGTTTTCTTTTAAAATAATTTATTTTGGAAGATCCGACATTATTATATACTACCATCTATTGAAATTGTCAACTTCTTTTTAAGACTATTATTAGAAGTTCAAAACAAAATAAATAAAGAAGTTGAAACTTGAAAATAGTCCTCTTATTTTCTTTCATGACGTCAAACGGTGTCCTTTTCTTTCAAATACACTTTTTCATTAATTTTTGTTGGGATTGTAAGTTGAAGGAGTAATAGAATTTGGAAAATCTAATCTTCAGGTCCATATTTACTAACTTATGCTATCATTGAAAAATTAGTATATGACTAAAATTGTTAAAAGTGTAAAAACTAAAAACAGAGAACACAAACTCATTGAGCAAATAAAACAACAACCAGTTAGATACTAGTATATTTGATGTATTTAATGGAAATAATTGGATTTGAATGGATGCTTGTGGTTGCAGGGAACGTGTTGACGGCAACAACACACATAATAACAGTGGTGGTGGGTGCAGGAGTGTTGGCTCTAGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGCATACTTGTTATGATCACATTTTCATCCATTTCTATTTACACTTACAATCTTATAGCTGATTGTTATAGATATCCAGACTCGGTTAATGGCAAGAGAAATTACACTTATATGCAGGCCGTTCATGCTTACCTAGGTATATATCATAAATACATCAATTCAAATTTAATCTAATTCCCACATTTATCCGACTTGAGGGATTAATTGCGCGGTAGAAGATACCCGATTCACGCTAAAATTGCACTACGTATGATAATGTTAAAATTTTGTCCACTATTTTTGTCAACGCTAAATTCATGTTCTATTTCAAATGTTTTAATTAGTTGCCCATTTTGTCATTAGGTGGAACAATGCACATATTTTGTGGATTGATTCAGTATGGGAAACTCGCTGGGATTACAGTGGGCTACACTATAACTTGCTCTACAAGCATGGTGTAAGTTATTACATTGATTAACCAGAGTATTTTTGGTCCTAAAATATGTGAGTGAGGTTGTATTACTGTGGTCCTTGAATGCATTGAAATTTTCAAAACGCCTCAACAAATTGATTAATAGAAGACACATTTGAGAATCAAACTAACTAGCGAAAAATATGTTTTGAAGACTAAACTGACTAATGAAAAAGTCTATTTATTTATATATGTTTTTGTAATTTTGATGCATTCAGTAACTATTGTTACAACATCTTAATATTTAAGAAACAAAATCATACCCGCTCACCCCACCCCCCCTAATTTATACATGTGGCAGGGCTATAAAGAAATTGATTTGCTTCCACAAAAATGGCCATGAAGCTTATTGCAAGTTTTCAAATAATCCCTACATGCTCGGTTTTGGGATCCTTCAGATTTTATTGTCTCAAATCCCAAATTTCCATAAATTAACATTGATATCAACTGTTGCTGCAATTACCTCTTTTGGTTATGCATTAATTGGAAGTGGACTCTCTCTAGCAGTTGTGGTGTCAGGTATAACCTTCATCACTTATATCTTATATCCTTCCAACAAAATATTAACAACCAGTGGCGGATCTTGAAATATTTTCTTGGGGGTGCCAGAATTGTATGAAATATATATTAAACTGTTTGATGGAAACATCATAATGGTTAACTGGTCCAGTGGTTTATTTTGCTTGATTGCAGAGCAAGGAGAGCAAGGGTGCGGGTTCGAATCAAGGGTGTGGGTTCGAATCCGCGTAAGAGCTTTTTTTTGAACAAAATAGAAAAAAAATAAAGAAAAAAATAAAGAAAGAGATGGAAGGGTCGGACACGCGACCCCCGTAAGAAAAACAAACTACATATCCGCTGCACCGACTAAGAACTAGTGTTTAGATTATGCCTAATCTAATATATATAGAAAACTTGGGGGTACCATGGCACCTGCCTGTCCCAAGGAAGATCCGCCCCTGTTAACAACATATATTCCAATTATTGGATAATTATGAAATTTGTTTGACAATATTATTCCAATTATGTATTTACTAAGGCATTTTTGGCTGTGAATAGGGAAAGGAGAAAGAACCAGTTTGTTTGGAACCAAAGTAGGACCAGGGTTATCAGAAGAAGACAAAATTTGGAAAGTTTTGACTGCTTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTCTATGATATAATGGTAAAGTAACATTATATTATTAATTAGAAGTATAAAAATGTAGACTTGGCATATTTGATTCATCCACTAGTCCATTGATATCAGTTATCTCTAATCTATGTTTTTATTTAGGATACATTAAAGTCAAATCCACCGGAAAGCACACAGATGAGAAAGGCAAATGTGTTGGGGATCACTACAATGACAATACTTTTCCTCCTATGTGGTTCACTTGGCTATGCTGCATTTGGTGATCACACTCCAGGGAACATCCTCACTGGTTTTGGATTTTATGAGCCCTTCTGGTTGGTTGCTTTGGGGAATGTATGCATTATAGTCCATATGGTAGGAGCATATCAGGTAATCGAATTTCTCTTTTAGTAACTGATAGATAAAAAAGAGATCATATTAGAGACACAACTTATTAAAAACATAATTGTATGAATGTTGATATAATGTTGCAGGTGTTAGCTCAGCCAATATTTCGTATAGTTGAAATGGGTGCTAACATGATGTGGCCGCGTTCATCTTTCATAAATGAGGAACACCCAAACAAAATTGGCTCTTTGACATTCAACATCAACTTATTTAGACTAATTTGGAGGACAATATTTGTGATAATGGCCACAGTTATTGCCATGGCAATGCCATTCTTCAACGAGTTTCTTGCATTGCTTGGAGCATTTGGATTTTGGCCACTCATTGTCTTCTTCCCGATACAAATGCACATCTCTCAGAAACATATAAACAGATTTTCATTGAAGTGGTGTGTGCTCCAACTATTGAGTCTTGTTTGTTTTTTTGTTTCAGTAGCTGCTGCAGTTGGTTCCATTCATGGAATTAGTAAGAATATCACAAAATACAATCTCTTCATGTATAAACAATAG
Protein sequence

>MS.gene72018.t1

MEAEKGVSIKQYSNEEVDDDGRIKRTGNVLTATTHIITVVVGAGVLALAWAISQLGWIAGILVMITFSSISIYTYNLIADCYRYPDSVNGKRNYTYMQAVHAYLGGTMHIFCGLIQYGKLAGITVGYTITCSTSMVAIKKLICFHKNGHEAYCKFSNNPYMLGFGILQILLSQIPNFHKLTLISTVAAITSFGYALIGSGLSLAVVVSGKGERTSLFGTKVGPGLSEEDKIWKVLTALGNIALACSYATVVYDIMDTLKSNPPESTQMRKANVLGITTMTILFLLCGSLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVCIIVHMVGAYQVLAQPIFRIVEMGANMMWPRSSFINEEHPNKIGSLTFNINLFRLIWRTIFVIMATVIAMAMPFFNEFLALLGAFGFWPLIVFFPIQMHISQKHINRFSLKWCVLQLLSLVCFFVSVAAAVGSIHGISKNITKYNLFMYKQ