Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72093.t1 | XP_013453168.1 | 96.8 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 9.30E-197 | 696 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72093.t1 | F4JNX2 | 30.8 | 415 | 209 | 9 | 17 | 374 | 55 | 448 | 5.0e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72093.t1 | A0A072UCK9 | 96.8 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 6.7e-197 | 696.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050826 | MS.gene72093 | 0.806814 | 6.85E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene72093 | 0.803763 | 2.99E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene72093 | 0.808386 | 3.18E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene72093 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene058836 | MS.gene72093 | 0.822729 | 2.03E-53 | -1.69E-46 |
| MS.gene059439 | MS.gene72093 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene059561 | MS.gene72093 | 0.975757 | 1.53E-140 | -1.69E-46 |
| MS.gene060777 | MS.gene72093 | 0.806043 | 9.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72093.t1 | MTR_6g088680 | 96.800 | 375 | 11 | 1 | 1 | 375 | 1 | 374 | 0.0 | 748 |
| MS.gene72093.t1 | MTR_6g088680 | 95.946 | 296 | 11 | 1 | 1 | 296 | 1 | 295 | 0.0 | 587 |
| MS.gene72093.t1 | MTR_8g102510 | 68.766 | 381 | 107 | 7 | 1 | 375 | 1 | 375 | 0.0 | 508 |
| MS.gene72093.t1 | MTR_8g102510 | 68.196 | 327 | 94 | 6 | 1 | 323 | 1 | 321 | 2.06e-151 | 430 |
| MS.gene72093.t1 | MTR_8g102510 | 66.333 | 300 | 91 | 6 | 1 | 296 | 1 | 294 | 4.23e-133 | 382 |
| MS.gene72093.t1 | MTR_6g088685 | 60.870 | 230 | 65 | 6 | 17 | 243 | 9 | 216 | 1.71e-82 | 251 |
| MS.gene72093.t1 | MTR_5g022450 | 33.588 | 393 | 182 | 8 | 24 | 360 | 62 | 431 | 6.99e-62 | 206 |
| MS.gene72093.t1 | MTR_4g073530 | 32.687 | 361 | 208 | 7 | 32 | 373 | 54 | 398 | 4.02e-59 | 197 |
| MS.gene72093.t1 | MTR_8g075350 | 33.666 | 401 | 180 | 8 | 27 | 360 | 71 | 452 | 1.15e-58 | 197 |
| MS.gene72093.t1 | MTR_5g022450 | 32.570 | 393 | 180 | 9 | 24 | 360 | 62 | 425 | 8.04e-56 | 189 |
| MS.gene72093.t1 | MTR_4g073530 | 28.829 | 333 | 204 | 6 | 8 | 323 | 33 | 349 | 2.90e-42 | 151 |
| MS.gene72093.t1 | MTR_8g466670 | 64.286 | 56 | 20 | 0 | 45 | 100 | 37 | 92 | 2.86e-18 | 82.0 |
| MS.gene72093.t1 | MTR_8g096220 | 64.706 | 51 | 18 | 0 | 45 | 95 | 5 | 55 | 5.96e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72093.t1 | AT4G15450 | 53.889 | 360 | 137 | 7 | 29 | 370 | 32 | 380 | 3.64e-132 | 383 |
| MS.gene72093.t1 | AT4G15450 | 52.778 | 360 | 135 | 8 | 29 | 370 | 32 | 374 | 1.32e-126 | 369 |
| MS.gene72093.t1 | AT3G21600 | 53.186 | 361 | 154 | 5 | 18 | 370 | 20 | 373 | 5.73e-125 | 365 |
| MS.gene72093.t1 | AT3G21600 | 54.545 | 341 | 142 | 4 | 18 | 352 | 20 | 353 | 1.33e-121 | 356 |
| MS.gene72093.t1 | AT3G21600 | 46.491 | 228 | 109 | 4 | 18 | 239 | 20 | 240 | 2.41e-65 | 209 |
| MS.gene72093.t1 | AT4G35985 | 32.771 | 415 | 201 | 9 | 17 | 374 | 55 | 448 | 5.18e-63 | 208 |
| MS.gene72093.t1 | AT3G51250 | 30.691 | 391 | 192 | 6 | 27 | 358 | 70 | 440 | 4.38e-59 | 198 |
| MS.gene72093.t1 | AT2G17840 | 32.593 | 405 | 191 | 12 | 11 | 360 | 54 | 431 | 7.95e-58 | 195 |
| MS.gene72093.t1 | AT4G35985 | 31.339 | 351 | 176 | 8 | 17 | 323 | 55 | 384 | 6.23e-48 | 167 |
| MS.gene72093.t1 | AT2G17840 | 30.163 | 368 | 175 | 12 | 11 | 323 | 54 | 394 | 9.73e-44 | 156 |
| MS.gene72093.t1 | AT3G51250 | 27.660 | 329 | 159 | 6 | 27 | 296 | 70 | 378 | 7.56e-39 | 142 |
| MS.gene72093.t1 | AT3G21590 | 43.210 | 162 | 74 | 4 | 168 | 323 | 69 | 218 | 4.87e-28 | 110 |
| MS.gene72093.t1 | AT4G35985 | 30.455 | 220 | 112 | 5 | 17 | 196 | 55 | 273 | 2.01e-26 | 108 |
| MS.gene72093.t1 | AT3G21590 | 39.130 | 138 | 66 | 4 | 168 | 299 | 69 | 194 | 9.09e-19 | 84.0 |
| MS.gene72093.t1 | AT3G21590 | 38.571 | 140 | 68 | 4 | 168 | 301 | 69 | 196 | 4.95e-18 | 82.4 |
Find 64 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCTGAAGGACTATTT+AGG | 0.231243 | 6.3:+82241936 | None:intergenic |
| TTCCATTGGTGGTAGGGTTT+TGG | 0.236710 | 6.3:+82243677 | None:intergenic |
| TTAGCAACAATCATCAAAAT+AGG | 0.264832 | 6.3:-82243483 | MS.gene72093:CDS |
| AACACCATTGAGTAAAGATT+TGG | 0.276866 | 6.3:+82241565 | None:intergenic |
| ATTCATTCTGTTGTTCTTTG+TGG | 0.319852 | 6.3:+82241856 | None:intergenic |
| AGTCCTTCAGATAAGATAAA+TGG | 0.321082 | 6.3:-82241929 | MS.gene72093:CDS |
| TTTCTTGCTAAGGCTATTGC+TGG | 0.337164 | 6.3:-82243198 | MS.gene72093:CDS |
| AACCATTCTTGTTGCAGCTT+GGG | 0.343724 | 6.3:+82240901 | None:intergenic |
| AGAAGAAGAGTGATCTTGAT+TGG | 0.343736 | 6.3:-82243257 | MS.gene72093:CDS |
| GAGAAATTTGGAGAAGCTAT+AGG | 0.362475 | 6.3:+82243645 | None:intergenic |
| CAACAAGAATGGTTTCTAAC+AGG | 0.380521 | 6.3:-82240892 | MS.gene72093:intron |
| CCTCTCCTGGGAGCATCTTA+AGG | 0.391812 | 6.3:+82241483 | None:intergenic |
| AAGGCTATTGCTGGTGGAAC+TGG | 0.403743 | 6.3:-82243189 | MS.gene72093:CDS |
| TATAGGTATGGGGAAGAAGC+AGG | 0.403987 | 6.3:-82240154 | MS.gene72093:intron |
| GAAATTCTTATACAAATTCC+AGG | 0.407082 | 6.3:-82243597 | MS.gene72093:CDS |
| GAAGCCAACAAGACCTCTCC+TGG | 0.411064 | 6.3:+82241470 | None:intergenic |
| TGCAGTAGAAGCTGGATTGA+TGG | 0.416271 | 6.3:+82240054 | None:intergenic |
| AGATTATCAACTTTCACAAC+TGG | 0.421713 | 6.3:+82243426 | None:intergenic |
| TAGTAATGCTTACACCAATC+AGG | 0.423191 | 6.3:-82243139 | MS.gene72093:intron |
| GTTGTATATCCAAACCTGAT+TGG | 0.424947 | 6.3:+82243125 | None:intergenic |
| GCTCCCAGGAGAGGTCTTGT+TGG | 0.427347 | 6.3:-82241474 | MS.gene72093:CDS |
| TGGAACTGGTCAGATTGTTA+AGG | 0.427763 | 6.3:-82243175 | MS.gene72093:CDS |
| AAAGTAACACCATAGCTTAG+AGG | 0.460022 | 6.3:+82243363 | None:intergenic |
| AGGATGTAAAGTGTATCTAA+TGG | 0.460051 | 6.3:-82243577 | MS.gene72093:CDS |
| AAACCATTCTTGTTGCAGCT+TGG | 0.465341 | 6.3:+82240900 | None:intergenic |
| AGTGTAGCTGCAGTAGAAGC+TGG | 0.473361 | 6.3:+82240046 | None:intergenic |
| CTTGCTAAGGCTATTGCTGG+TGG | 0.481145 | 6.3:-82243195 | MS.gene72093:CDS |
| TTATCCAAATCTTTACTCAA+TGG | 0.483709 | 6.3:-82241569 | MS.gene72093:CDS |
| ATAGGTATGGGGAAGAAGCA+GGG | 0.484548 | 6.3:-82240153 | MS.gene72093:intron |
| CATTCTTGTTGCAGCTTGGG+AGG | 0.487768 | 6.3:+82240904 | None:intergenic |
| GAAGAAGAGTGATCTTGATT+GGG | 0.488678 | 6.3:-82243256 | MS.gene72093:CDS |
| AAATCTTTACTCAATGGTGT+TGG | 0.490241 | 6.3:-82241563 | MS.gene72093:CDS |
| GGAACTGGTCAGATTGTTAA+GGG | 0.499722 | 6.3:-82243174 | MS.gene72093:CDS |
| GCTTAAATCTCAACCAGGGC+AGG | 0.499904 | 6.3:-82241510 | MS.gene72093:CDS |
| TCTTGTTGCAGCTTGGGAGG+TGG | 0.500890 | 6.3:+82240907 | None:intergenic |
| ATTAGATACACTTTACATCC+TGG | 0.504957 | 6.3:+82243579 | None:intergenic |
| CTCCCAAGCTGCAACAAGAA+TGG | 0.507194 | 6.3:-82240903 | MS.gene72093:CDS |
| CTCCAAAACCCTACCACCAA+TGG | 0.509528 | 6.3:-82243679 | MS.gene72093:CDS |
| TAGGTATGGGGAAGAAGCAG+GGG | 0.514222 | 6.3:-82240152 | MS.gene72093:CDS |
| GACATGCTGCTAATACTGCT+TGG | 0.519819 | 6.3:-82240099 | MS.gene72093:CDS |
| TTTACTTACTGACTGCATCA+AGG | 0.520023 | 6.3:+82241447 | None:intergenic |
| ATCTTAAGGAATGCCTGCCC+TGG | 0.521001 | 6.3:+82241497 | None:intergenic |
| CCTGGTTGAGATTTAAGCAC+AGG | 0.526473 | 6.3:+82241515 | None:intergenic |
| CCACCATTTATCTTATCTGA+AGG | 0.528195 | 6.3:+82241926 | None:intergenic |
| ATTTGGAGAAGCTATAGGAA+TGG | 0.551970 | 6.3:+82243650 | None:intergenic |
| CCTGTGCTTAAATCTCAACC+AGG | 0.555632 | 6.3:-82241515 | MS.gene72093:CDS |
| CTTTCACAGGCAATGAAAAG+AGG | 0.557368 | 6.3:+82243397 | None:intergenic |
| GATAAGATAAATGGTGGCAA+TGG | 0.557596 | 6.3:-82241920 | MS.gene72093:CDS |
| GGCTCATGACCATCTTTCAC+AGG | 0.561567 | 6.3:+82243384 | None:intergenic |
| AAAGTGTATCTAATGGATGA+AGG | 0.562070 | 6.3:-82243570 | MS.gene72093:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.565912 | 6.3:+82241448 | None:intergenic |
| GAATGAATGAAAACCTCATA+CGG | 0.566239 | 6.3:-82241841 | MS.gene72093:intron |
| GGTCATGAGCCTCTAAGCTA+TGG | 0.578398 | 6.3:-82243372 | MS.gene72093:CDS |
| GCATTCCTTAAGATGCTCCC+AGG | 0.593115 | 6.3:-82241488 | MS.gene72093:CDS |
| CCTTAAGATGCTCCCAGGAG+AGG | 0.605060 | 6.3:-82241483 | MS.gene72093:CDS |
| GATAAATGGTGGCAATGGCA+TGG | 0.606041 | 6.3:-82241915 | MS.gene72093:CDS |
| GTCTTGGTTATATAGGTATG+GGG | 0.612475 | 6.3:-82240164 | MS.gene72093:intron |
| GAGCATGTATTTGCAACTGC+AGG | 0.617638 | 6.3:-82240121 | MS.gene72093:CDS |
| AAGCCAACAAGACCTCTCCT+GGG | 0.622823 | 6.3:+82241471 | None:intergenic |
| CCTTCAGATAAGATAAATGG+TGG | 0.636170 | 6.3:-82241926 | MS.gene72093:CDS |
| ATGCTACCAGAAAATTCATG+TGG | 0.664358 | 6.3:+82243339 | None:intergenic |
| AATGGTGTTGGAATAGTGAG+TGG | 0.664953 | 6.3:-82241551 | MS.gene72093:CDS |
| CTGTGCTTAAATCTCAACCA+GGG | 0.724504 | 6.3:-82241514 | MS.gene72093:CDS |
| GAAGCACATGAACTTACACA+AGG | 0.731250 | 6.3:-82243546 | MS.gene72093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAATTAAAATAATGA+GGG | + | chr6.3:82243226-82243245 | None:intergenic | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr6.3:82241078-82241097 | MS.gene72093:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr6.3:82241097-82241078 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr6.3:82241079-82241098 | MS.gene72093:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr6.3:82241098-82241079 | None:intergenic | 15.0% |
| !! | ACTAATTAATTGATTGATAT+TGG | + | chr6.3:82242656-82242675 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr6.3:82240857-82240876 | None:intergenic | 15.0% |
| !! | TCTATAAGCAATTAATTTAT+GGG | + | chr6.3:82241153-82241172 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr6.3:82240988-82241007 | MS.gene72093:intron | 15.0% |
| !! | TTCTATAAGCAATTAATTTA+TGG | + | chr6.3:82241154-82241173 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr6.3:82240822-82240841 | None:intergenic | 15.0% |
| !!! | ATTACTTTTCAAACAAAAAT+AGG | + | chr6.3:82241684-82241703 | None:intergenic | 15.0% |
| !!! | CTCATTATTTTAATTGAAAA+AGG | - | chr6.3:82243225-82243244 | MS.gene72093:CDS | 15.0% |
| !!! | CTTTTTCAATTAAAATAATG+AGG | + | chr6.3:82243227-82243246 | None:intergenic | 15.0% |
| !!! | TAATTTTGACAACATTATAA+TGG | + | chr6.3:82242616-82242635 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTTTATCAAG+TGG | - | chr6.3:82242686-82242705 | MS.gene72093:intron | 15.0% |
| !!! | TTCACTCTTTTTTATTTATT+TGG | + | chr6.3:82243464-82243483 | None:intergenic | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr6.3:82240727-82240746 | None:intergenic | 20.0% |
| !! | AACAATTAAAATTTCCTTTG+TGG | + | chr6.3:82242910-82242929 | None:intergenic | 20.0% |
| !! | GAAGAAAAAATGTATATGTA+AGG | + | chr6.3:82242982-82243001 | None:intergenic | 20.0% |
| !! | GATAAAAATATAAGATAGAG+TGG | + | chr6.3:82242683-82242702 | None:intergenic | 20.0% |
| !! | GCTATTTGGTATAAAATTTA+GGG | + | chr6.3:82241485-82241504 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr6.3:82240728-82240747 | None:intergenic | 20.0% |
| !! | TAGTATTTCCTTAAAACTTA+TGG | + | chr6.3:82241307-82241326 | None:intergenic | 20.0% |
| !! | TATTTATGCTAATAATGTAG+TGG | + | chr6.3:82242877-82242896 | None:intergenic | 20.0% |
| !! | TGGATATACAACTAAATTAA+GGG | - | chr6.3:82240591-82240610 | MS.gene72093:intron | 20.0% |
| !! | TTACAATTTCAACTACTAAA+AGG | - | chr6.3:82242580-82242599 | MS.gene72093:intron | 20.0% |
| !! | TTGGATATACAACTAAATTA+AGG | - | chr6.3:82240590-82240609 | MS.gene72093:intron | 20.0% |
| !!! | AAAACAAGAAAGTTTTAAGT+TGG | + | chr6.3:82241427-82241446 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTATTTATTTGGT+TGG | + | chr6.3:82243460-82243479 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCATTAGATATTT+TGG | - | chr6.3:82241253-82241272 | MS.gene72093:intron | 20.0% |
| !!! | TGATTATAATTTTCAACACT+TGG | + | chr6.3:82240486-82240505 | None:intergenic | 20.0% |
| !!! | TTAAAAGTTGTTTTGAAATC+AGG | - | chr6.3:82241724-82241743 | MS.gene72093:intron | 20.0% |
| !!! | TTAAGGGTAAAATTGTTATT+TGG | + | chr6.3:82242953-82242972 | None:intergenic | 20.0% |
| !!! | TTATAATCATTTTCTTGCTA+AGG | - | chr6.3:82240497-82240516 | MS.gene72093:intron | 20.0% |
| !!! | TTTTAGATTGAGCTAAAAAA+TGG | - | chr6.3:82241509-82241528 | MS.gene72093:CDS | 20.0% |
| ! | AATAATGAGGGTAAAAAATG+AGG | + | chr6.3:82243214-82243233 | None:intergenic | 25.0% |
| ! | AATATATAGTTAGACCACAA+AGG | - | chr6.3:82242893-82242912 | MS.gene72093:intron | 25.0% |
| ! | AATTAAAGTACGTCAATCAA+AGG | - | chr6.3:82242540-82242559 | MS.gene72093:intron | 25.0% |
| ! | ACTATATTTGCTTCTTTAAC+CGG | + | chr6.3:82241348-82241367 | None:intergenic | 25.0% |
| ! | ACTTATATGTTATCCACTAT+AGG | - | chr6.3:82243367-82243386 | MS.gene72093:CDS | 25.0% |
| ! | AGATAGATATGATTAAAGTC+AGG | + | chr6.3:82241952-82241971 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr6.3:82240694-82240713 | None:intergenic | 25.0% |
| ! | ATAATGAGGGTAAAAAATGA+GGG | + | chr6.3:82243213-82243232 | None:intergenic | 25.0% |
| ! | ATATGTAAGGCAATCATTAA+GGG | + | chr6.3:82242969-82242988 | None:intergenic | 25.0% |
| ! | CAAATATAGTAGTATTGTGT+TGG | - | chr6.3:82241358-82241377 | MS.gene72093:intron | 25.0% |
| ! | GAAATTCTTATACAAATTCC+AGG | - | chr6.3:82240108-82240127 | MS.gene72093:CDS | 25.0% |
| ! | GGCTATTTGGTATAAAATTT+AGG | + | chr6.3:82241486-82241505 | None:intergenic | 25.0% |
| ! | GTAGTTGAAATTGTAAAAGT+CGG | + | chr6.3:82242576-82242595 | None:intergenic | 25.0% |
| ! | TATAAGTTCATGAGAGAATA+TGG | + | chr6.3:82243114-82243133 | None:intergenic | 25.0% |
| ! | TATATGTAAGGCAATCATTA+AGG | + | chr6.3:82242970-82242989 | None:intergenic | 25.0% |
| ! | TTAGCAACAATCATCAAAAT+AGG | - | chr6.3:82240222-82240241 | MS.gene72093:intron | 25.0% |
| ! | TTATCCAAATCTTTACTCAA+TGG | - | chr6.3:82242136-82242155 | MS.gene72093:intron | 25.0% |
| !! | ATTTCTTGTCTAAGAGTTTT+TGG | + | chr6.3:82240093-82240112 | None:intergenic | 25.0% |
| !! | CATAGTAAAACTTTTTACAC+CGG | + | chr6.3:82242010-82242029 | None:intergenic | 25.0% |
| !! | CTAATATTTGCTTGCATTTT+TGG | + | chr6.3:82243696-82243715 | None:intergenic | 25.0% |
| !! | GAAAATTGCCATAAGTTTTA+AGG | - | chr6.3:82241296-82241315 | MS.gene72093:intron | 25.0% |
| !! | TACAAGGTCACTATTTTATA+GGG | - | chr6.3:82241110-82241129 | MS.gene72093:intron | 25.0% |
| !! | TTACAAGGTCACTATTTTAT+AGG | - | chr6.3:82241109-82241128 | MS.gene72093:intron | 25.0% |
| !! | TTTGGTTGAATCTTTTCTTA+AGG | - | chr6.3:82240392-82240411 | MS.gene72093:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr6.3:82241017-82241036 | MS.gene72093:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr6.3:82241016-82241035 | MS.gene72093:intron | 25.0% |
| !!! | TGTTGAGTTTTTTAAGTGAT+TGG | + | chr6.3:82243323-82243342 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGTTGAGAAATT+TGG | + | chr6.3:82240075-82240094 | None:intergenic | 25.0% |
| !!! | TTTTAGCTCAATCTAAAAGT+TGG | + | chr6.3:82241507-82241526 | None:intergenic | 25.0% |
| !!! | TTTTGAAATCAGGTTCAAAA+AGG | - | chr6.3:82241734-82241753 | MS.gene72093:intron | 25.0% |
| AAATAGCCTATATCTGATAG+CGG | + | chr6.3:82243398-82243417 | None:intergenic | 30.0% | |
| AAATCTTTACTCAATGGTGT+TGG | - | chr6.3:82242142-82242161 | MS.gene72093:intron | 30.0% | |
| AACACCATTGAGTAAAGATT+TGG | + | chr6.3:82242143-82242162 | None:intergenic | 30.0% | |
| AATCAAATAGAAGACTGAAC+AGG | + | chr6.3:82242500-82242519 | None:intergenic | 30.0% | |
| AGATTATCAACTTTCACAAC+TGG | + | chr6.3:82240282-82240301 | None:intergenic | 30.0% | |
| AGGATGTAAAGTGTATCTAA+TGG | - | chr6.3:82240128-82240147 | MS.gene72093:CDS | 30.0% | |
| AGTCCTTCAGATAAGATAAA+TGG | - | chr6.3:82241776-82241795 | MS.gene72093:intron | 30.0% | |
| ATTAGATACACTTTACATCC+TGG | + | chr6.3:82240129-82240148 | None:intergenic | 30.0% | |
| ATTCATTCTGTTGTTCTTTG+TGG | + | chr6.3:82241852-82241871 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr6.3:82240954-82240973 | None:intergenic | 30.0% | |
| CAATCTAAAAGTTGGCTATT+TGG | + | chr6.3:82241499-82241518 | None:intergenic | 30.0% | |
| CAATTTCAACTACTAAAAGG+TGG | - | chr6.3:82242583-82242602 | MS.gene72093:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr6.3:82240695-82240714 | None:intergenic | 30.0% | |
| CATGAAAAACTAGTTAGAGT+CGG | + | chr6.3:82242071-82242090 | None:intergenic | 30.0% | |
| GAATGAATGAAAACCTCATA+CGG | - | chr6.3:82241864-82241883 | MS.gene72093:CDS | 30.0% | |
| TCTTATCTGAAGGACTATTT+AGG | + | chr6.3:82241772-82241791 | None:intergenic | 30.0% | |
| TGTCTTGGTTATATAGGTAT+GGG | - | chr6.3:82243540-82243559 | MS.gene72093:CDS | 30.0% | |
| TTCTTTAGCCAGTAAAACAT+CGG | - | chr6.3:82241450-82241469 | MS.gene72093:intron | 30.0% | |
| ! | AAAGTGTATCTAATGGATGA+AGG | - | chr6.3:82240135-82240154 | MS.gene72093:CDS | 30.0% |
| ! | ACTTTTCCACATGAATTTTC+TGG | - | chr6.3:82240360-82240379 | MS.gene72093:intron | 30.0% |
| ! | ATCTTTTAATGTCACAGACA+AGG | - | chr6.3:82242733-82242752 | MS.gene72093:intron | 30.0% |
| !! | ACTGGTTCATCTTTTGTTAA+AGG | + | chr6.3:82240264-82240283 | None:intergenic | 30.0% |
| !! | GTATTTTTGAATACCGTATG+AGG | + | chr6.3:82241880-82241899 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr6.3:82240634-82240653 | None:intergenic | 30.0% |
| !! | TACTCTAAGATCTTCAACTT+TGG | + | chr6.3:82242299-82242318 | None:intergenic | 30.0% |
| !! | TGGTTGGTAAATAATTAACG+TGG | + | chr6.3:82243444-82243463 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr6.3:82240635-82240654 | None:intergenic | 30.0% |
| !!! | AACCACGATTTGTTTTAAGT+CGG | - | chr6.3:82242438-82242457 | MS.gene72093:intron | 30.0% |
| !!! | ATAGGAATGGTTTTTTCCAT+TGG | + | chr6.3:82240045-82240064 | None:intergenic | 30.0% |
| AAAAGTCATGCAGTTTCATG+CGG | + | chr6.3:82241656-82241675 | None:intergenic | 35.0% | |
| AAAGTAACACCATAGCTTAG+AGG | + | chr6.3:82240345-82240364 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr6.3:82241094-82241113 | MS.gene72093:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr6.3:82241113-82241094 | None:intergenic | 35.0% | |
| AGAAGAAGAGTGATCTTGAT+TGG | - | chr6.3:82240448-82240467 | MS.gene72093:intron | 35.0% | |
| AGTGTGTGTCTTGGTTATAT+AGG | - | chr6.3:82243534-82243553 | MS.gene72093:CDS | 35.0% | |
| ATGCTACCAGAAAATTCATG+TGG | + | chr6.3:82240369-82240388 | None:intergenic | 35.0% | |
| ATTTGGAGAAGCTATAGGAA+TGG | + | chr6.3:82240058-82240077 | None:intergenic | 35.0% | |
| CAACAAGAATGGTTTCTAAC+AGG | - | chr6.3:82242813-82242832 | MS.gene72093:intron | 35.0% | |
| CCACCATTTATCTTATCTGA+AGG | + | chr6.3:82241782-82241801 | None:intergenic | 35.0% | |
| CCTTCAGATAAGATAAATGG+TGG | - | chr6.3:82241779-82241798 | MS.gene72093:intron | 35.0% | |
| CTGAAAAGTCATACGAATGA+TGG | - | chr6.3:82241970-82241989 | MS.gene72093:intron | 35.0% | |
| GAAGAAGAGTGATCTTGATT+GGG | - | chr6.3:82240449-82240468 | MS.gene72093:intron | 35.0% | |
| GACACACACTCTTGTTAATT+AGG | + | chr6.3:82243524-82243543 | None:intergenic | 35.0% | |
| GAGAAATTTGGAGAAGCTAT+AGG | + | chr6.3:82240063-82240082 | None:intergenic | 35.0% | |
| GATAAGATAAATGGTGGCAA+TGG | - | chr6.3:82241785-82241804 | MS.gene72093:intron | 35.0% | |
| GTCTTGGTTATATAGGTATG+GGG | - | chr6.3:82243541-82243560 | MS.gene72093:CDS | 35.0% | |
| GTGTCTTGGTTATATAGGTA+TGG | - | chr6.3:82243539-82243558 | MS.gene72093:CDS | 35.0% | |
| GTTGTATATCCAAACCTGAT+TGG | + | chr6.3:82240583-82240602 | None:intergenic | 35.0% | |
| TAGTAATGCTTACACCAATC+AGG | - | chr6.3:82240566-82240585 | MS.gene72093:intron | 35.0% | |
| TGAAATCAGGTTCAAAAAGG+AGG | - | chr6.3:82241737-82241756 | MS.gene72093:intron | 35.0% | |
| TGAGACAGTGTAAAATAGTC+AGG | + | chr6.3:82241902-82241921 | None:intergenic | 35.0% | |
| ! | ATTAACAAGAGTGTGTGTCT+TGG | - | chr6.3:82243525-82243544 | MS.gene72093:CDS | 35.0% |
| ! | GATGGTTTGTAAATGATTGC+CGG | - | chr6.3:82241988-82242007 | MS.gene72093:intron | 35.0% |
| ! | TATGCTAACCGATGTTTTAC+TGG | + | chr6.3:82241461-82241480 | None:intergenic | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | + | chr6.3:82242260-82242279 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | + | chr6.3:82242261-82242280 | None:intergenic | 35.0% |
| ! | TTTTCATTGCCTGTGAAAGA+TGG | - | chr6.3:82240312-82240331 | MS.gene72093:intron | 35.0% |
| !! | ACATGAATTTTCTGGTAGCA+TGG | - | chr6.3:82240368-82240387 | MS.gene72093:intron | 35.0% |
| !! | GATGTTTTACTGGCTAAAGA+AGG | + | chr6.3:82241451-82241470 | None:intergenic | 35.0% |
| !!! | TTGTTTTAAGTCGGTGACAA+CGG | - | chr6.3:82242447-82242466 | MS.gene72093:intron | 35.0% |
| AAACCATTCTTGTTGCAGCT+TGG | + | chr6.3:82242808-82242827 | None:intergenic | 40.0% | |
| AACCATTCTTGTTGCAGCTT+GGG | + | chr6.3:82242807-82242826 | None:intergenic | 40.0% | |
| ATGCTTACACCAATCAGGTT+TGG | - | chr6.3:82240571-82240590 | MS.gene72093:intron | 40.0% | |
| CTGTGCTTAAATCTCAACCA+GGG | - | chr6.3:82242191-82242210 | MS.gene72093:intron | 40.0% | |
| CTTTCACAGGCAATGAAAAG+AGG | + | chr6.3:82240311-82240330 | None:intergenic | 40.0% | |
| GAAGCACATGAACTTACACA+AGG | - | chr6.3:82240159-82240178 | MS.gene72093:intron | 40.0% | |
| GGAACTGGTCAGATTGTTAA+GGG | - | chr6.3:82240531-82240550 | MS.gene72093:intron | 40.0% | |
| TAGTGTTTACAGAACCTGAC+CGG | - | chr6.3:82242370-82242389 | MS.gene72093:intron | 40.0% | |
| TGGAACTGGTCAGATTGTTA+AGG | - | chr6.3:82240530-82240549 | MS.gene72093:intron | 40.0% | |
| TTTCTTGCTAAGGCTATTGC+TGG | - | chr6.3:82240507-82240526 | MS.gene72093:intron | 40.0% | |
| ! | AATGGTGTTGGAATAGTGAG+TGG | - | chr6.3:82242154-82242173 | MS.gene72093:intron | 40.0% |
| ! | TGGTCGGTTCAATTAGGAAT+CGG | - | chr6.3:82242395-82242414 | MS.gene72093:intron | 40.0% |
| !! | ATTTTCTGGTAGCATGGCTT+TGG | - | chr6.3:82240374-82240393 | MS.gene72093:intron | 40.0% |
| !! | CACCGACTTAAAACAAATCG+TGG | + | chr6.3:82242443-82242462 | None:intergenic | 40.0% |
| !! | TCATTTTGATCAAGCGATCG+TGG | + | chr6.3:82241552-82241571 | None:intergenic | 40.0% |
| !!! | GGAATGGTTTTTTCCATTGG+TGG | + | chr6.3:82240042-82240061 | None:intergenic | 40.0% |
| !!! | GGTTTTTTCCATTGGTGGTA+GGG | + | chr6.3:82240037-82240056 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTCCATTGGTGGT+AGG | + | chr6.3:82240038-82240057 | None:intergenic | 40.0% |
| AAATACTAACCAATGCCCGC+AGG | - | chr6.3:82241319-82241338 | MS.gene72093:intron | 45.0% | |
| AATACTAACCAATGCCCGCA+GGG | - | chr6.3:82241320-82241339 | MS.gene72093:intron | 45.0% | |
| ATAGGTATGGGGAAGAAGCA+GGG | - | chr6.3:82243552-82243571 | MS.gene72093:CDS | 45.0% | |
| CCTGGTTGAGATTTAAGCAC+AGG | + | chr6.3:82242193-82242212 | None:intergenic | 45.0% | |
| CCTGTGCTTAAATCTCAACC+AGG | - | chr6.3:82242190-82242209 | MS.gene72093:intron | 45.0% | |
| GAACAGCGATTCAACCTAGA+TGG | - | chr6.3:82242469-82242488 | MS.gene72093:intron | 45.0% | |
| GACATGCTGCTAATACTGCT+TGG | - | chr6.3:82243606-82243625 | MS.gene72093:CDS | 45.0% | |
| GAGCATGTATTTGCAACTGC+AGG | - | chr6.3:82243584-82243603 | MS.gene72093:CDS | 45.0% | |
| GATAAATGGTGGCAATGGCA+TGG | - | chr6.3:82241790-82241809 | MS.gene72093:intron | 45.0% | |
| TATAGGTATGGGGAAGAAGC+AGG | - | chr6.3:82243551-82243570 | MS.gene72093:CDS | 45.0% | |
| TGCAGTAGAAGCTGGATTGA+TGG | + | chr6.3:82243654-82243673 | None:intergenic | 45.0% | |
| ! | CTGAACAGGTTGAACCATCT+AGG | + | chr6.3:82242486-82242505 | None:intergenic | 45.0% |
| !! | TTCCATTGGTGGTAGGGTTT+TGG | + | chr6.3:82240031-82240050 | None:intergenic | 45.0% |
| !!! | CAAGGTTTTTGAAGCAGCAG+AGG | - | chr6.3:82242751-82242770 | MS.gene72093:intron | 45.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr6.3:82241049-82241068 | MS.gene72093:intron | 5.0% |
| !!! | ATAATTAAAATAAATTTGTT+TGG | - | chr6.3:82243085-82243104 | MS.gene72093:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr6.3:82241050-82241069 | MS.gene72093:intron | 5.0% |
| AAGCCAACAAGACCTCTCCT+GGG | + | chr6.3:82242237-82242256 | None:intergenic | 50.0% | |
| AAGGCTATTGCTGGTGGAAC+TGG | - | chr6.3:82240516-82240535 | MS.gene72093:intron | 50.0% | |
| AGTGTAGCTGCAGTAGAAGC+TGG | + | chr6.3:82243662-82243681 | None:intergenic | 50.0% | |
| ATCTTAAGGAATGCCTGCCC+TGG | + | chr6.3:82242211-82242230 | None:intergenic | 50.0% | |
| CATTCTTGTTGCAGCTTGGG+AGG | + | chr6.3:82242804-82242823 | None:intergenic | 50.0% | |
| CCTAATTGAACCGACCAGTC+CGG | + | chr6.3:82242392-82242411 | None:intergenic | 50.0% | |
| CTCCAAAACCCTACCACCAA+TGG | - | chr6.3:82240026-82240045 | MS.gene72093:CDS | 50.0% | |
| CTCCCAAGCTGCAACAAGAA+TGG | - | chr6.3:82242802-82242821 | MS.gene72093:intron | 50.0% | |
| CTTGCTAAGGCTATTGCTGG+TGG | - | chr6.3:82240510-82240529 | MS.gene72093:intron | 50.0% | |
| GCACGTCCGCTATCAGATAT+AGG | - | chr6.3:82243389-82243408 | MS.gene72093:CDS | 50.0% | |
| GCATTCCTTAAGATGCTCCC+AGG | - | chr6.3:82242217-82242236 | MS.gene72093:intron | 50.0% | |
| GCTTAAATCTCAACCAGGGC+AGG | - | chr6.3:82242195-82242214 | MS.gene72093:intron | 50.0% | |
| GGCTCATGACCATCTTTCAC+AGG | + | chr6.3:82240324-82240343 | None:intergenic | 50.0% | |
| GGTCATGAGCCTCTAAGCTA+TGG | - | chr6.3:82240333-82240352 | MS.gene72093:intron | 50.0% | |
| TAGGTATGGGGAAGAAGCAG+GGG | - | chr6.3:82243553-82243572 | MS.gene72093:CDS | 50.0% | |
| TTTACAGAACCTGACCGGAC+TGG | - | chr6.3:82242375-82242394 | MS.gene72093:intron | 50.0% | |
| CCTTAAGATGCTCCCAGGAG+AGG | - | chr6.3:82242222-82242241 | MS.gene72093:intron | 55.0% | |
| CTTCTTTAACCGGTGCCCTG+CGG | + | chr6.3:82241338-82241357 | None:intergenic | 55.0% | |
| GAAGCCAACAAGACCTCTCC+TGG | + | chr6.3:82242238-82242257 | None:intergenic | 55.0% | |
| TCTTGTTGCAGCTTGGGAGG+TGG | + | chr6.3:82242801-82242820 | None:intergenic | 55.0% | |
| TTCTTTAACCGGTGCCCTGC+GGG | + | chr6.3:82241337-82241356 | None:intergenic | 55.0% | |
| !! | CCGGACTGGTCGGTTCAATT+AGG | - | chr6.3:82242389-82242408 | MS.gene72093:intron | 55.0% |
| !! | CCTCTCCTGGGAGCATCTTA+AGG | + | chr6.3:82242225-82242244 | None:intergenic | 55.0% |
| !! | GATAGCGGACGTGCCTATAG+TGG | + | chr6.3:82243383-82243402 | None:intergenic | 55.0% |
| TTGAACCGACCAGTCCGGTC+AGG | + | chr6.3:82242387-82242406 | None:intergenic | 60.0% | |
| ! | GCTCCCAGGAGAGGTCTTGT+TGG | - | chr6.3:82242231-82242250 | MS.gene72093:intron | 60.0% |
| !! | CAGAACCTGACCGGACTGGT+CGG | - | chr6.3:82242379-82242398 | MS.gene72093:intron | 60.0% |
| AACCAATGCCCGCAGGGCAC+CGG | - | chr6.3:82241326-82241345 | MS.gene72093:intron | 65.0% | |
| AACCGGTGCCCTGCGGGCAT+TGG | + | chr6.3:82241331-82241350 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 82240012 | 82243715 | 82240012 | ID=MS.gene72093 |
| chr6.3 | mRNA | 82240012 | 82243715 | 82240012 | ID=MS.gene72093.t1;Parent=MS.gene72093 |
| chr6.3 | exon | 82243140 | 82243715 | 82243140 | ID=MS.gene72093.t1.exon1;Parent=MS.gene72093.t1 |
| chr6.3 | CDS | 82243140 | 82243715 | 82243140 | ID=cds.MS.gene72093.t1;Parent=MS.gene72093.t1 |
| chr6.3 | exon | 82241842 | 82241981 | 82241842 | ID=MS.gene72093.t1.exon2;Parent=MS.gene72093.t1 |
| chr6.3 | CDS | 82241842 | 82241981 | 82241842 | ID=cds.MS.gene72093.t1;Parent=MS.gene72093.t1 |
| chr6.3 | exon | 82241456 | 82241622 | 82241456 | ID=MS.gene72093.t1.exon3;Parent=MS.gene72093.t1 |
| chr6.3 | CDS | 82241456 | 82241622 | 82241456 | ID=cds.MS.gene72093.t1;Parent=MS.gene72093.t1 |
| chr6.3 | exon | 82240893 | 82240977 | 82240893 | ID=MS.gene72093.t1.exon4;Parent=MS.gene72093.t1 |
| chr6.3 | CDS | 82240893 | 82240977 | 82240893 | ID=cds.MS.gene72093.t1;Parent=MS.gene72093.t1 |
| chr6.3 | exon | 82240012 | 82240171 | 82240012 | ID=MS.gene72093.t1.exon5;Parent=MS.gene72093.t1 |
| chr6.3 | CDS | 82240012 | 82240171 | 82240012 | ID=cds.MS.gene72093.t1;Parent=MS.gene72093.t1 |
| Gene Sequence |
| Protein sequence |
