AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050826


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050826.t1 MTR_7g110880 97.241 290 6 2 1 289 1 289 0.0 575
MS.gene050826.t1 MTR_1g116590 49.275 69 33 2 214 280 41 109 3.63e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050826.t1 AT2G46940 42.177 294 120 11 1 286 1 252 7.82e-52 171
MS.gene050826.t1 AT3G62070 45.594 261 90 12 37 289 12 228 8.96e-44 149
MS.gene050826.t1 AT4G01670 42.160 287 101 8 19 287 4 243 1.59e-42 146
MS.gene050826.t1 AT2G31560 41.489 94 28 2 214 280 102 195 3.06e-13 67.8
MS.gene050826.t1 AT2G31560 41.489 94 28 2 214 280 102 195 3.06e-13 67.8
MS.gene050826.t1 AT2G31560 41.489 94 28 2 214 280 102 195 3.06e-13 67.8
MS.gene050826.t1 AT2G43340 41.489 94 28 2 214 280 89 182 9.91e-13 65.9
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7
MS.gene050826.t1 AT1G05870 42.105 95 27 3 214 280 88 182 3.09e-12 64.7

Find 0 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTTTATATTATGT+AGG - 50583:4464-4483 MS.gene050826:CDS 10.0%
!! ATAAACATTATAAGATTGTT+TGG - 50583:4333-4352 MS.gene050826:CDS 15.0%
!! ATGATGATTATATTAATGAT+GGG - 50583:3542-3561 MS.gene050826:CDS 15.0%
!! AAAACAATTTATGACATGTT+CGG - 50583:4367-4386 MS.gene050826:CDS 20.0%
!! GATGATGATTATATTAATGA+TGG - 50583:3541-3560 MS.gene050826:CDS 20.0%
! AAATAGTTGGGAGAATTTAT+GGG - 50583:3975-3994 MS.gene050826:CDS 25.0%
AACCAAAATTGAGAATTACC+GGG + 50583:4270-4289 None:intergenic 30.0%
AGAAAAGAAACAAAGGAAAG+TGG - 50583:3895-3914 MS.gene050826:CDS 30.0%
ATCAGCTTCAAAACTTTCAA+TGG + 50583:3683-3702 None:intergenic 30.0%
ATTCAAGATGAAGACTTTGA+AGG - 50583:3514-3533 MS.gene050826:CDS 30.0%
GAAATAGTTGGGAGAATTTA+TGG - 50583:3974-3993 MS.gene050826:CDS 30.0%
GAACCAAAATTGAGAATTAC+CGG + 50583:4271-4290 None:intergenic 30.0%
GAGAAAGAGAAATTAGAGAA+TGG - 50583:4021-4040 MS.gene050826:CDS 30.0%
GTAATTCACCTATTGCTAAT+TGG - 50583:4232-4251 MS.gene050826:CDS 30.0%
TAAGCGCGTATCATATATTA+TGG + 50583:4411-4430 None:intergenic 30.0%
TGAAGCAAGAAAAGAAACAA+AGG - 50583:3888-3907 MS.gene050826:CDS 30.0%
TTCATCTTGAATTGTGATCA+TGG + 50583:3506-3525 None:intergenic 30.0%
! AAAATCACCATAACTTGTCA+AGG - 50583:3584-3603 MS.gene050826:intron 30.0%
! AATGAGAAGTGTGTTTGAAA+GGG - 50583:3951-3970 MS.gene050826:CDS 30.0%
! TTTGGTTCATATTTCCGATT+AGG - 50583:4283-4302 MS.gene050826:CDS 30.0%
!!! ATTGAAAGTTTTGAAGCTGA+TGG - 50583:3682-3701 MS.gene050826:intron 30.0%
AGAAACAAAGGAAAGTGGTT+TGG - 50583:3900-3919 MS.gene050826:CDS 35.0%
ATGATCAGTTACTACAACCA+GGG - 50583:3746-3765 MS.gene050826:intron 35.0%
GAAACAAAGGAAAGTGGTTT+GGG - 50583:3901-3920 MS.gene050826:CDS 35.0%
GTTAAAGCTTGTAGAGATCT+TGG - 50583:4138-4157 MS.gene050826:CDS 35.0%
GTTTGAAAGGGGAAATAGTT+GGG - 50583:3963-3982 MS.gene050826:CDS 35.0%
TAGAGATCTTGGATTTGAGT+TGG - 50583:4149-4168 MS.gene050826:CDS 35.0%
TAGGAGTTTGTGTATGGATT+TGG - 50583:4110-4129 MS.gene050826:CDS 35.0%
TCAACACTTGATACTAGTAG+TGG - 50583:4207-4226 MS.gene050826:CDS 35.0%
TGTTTGAAAGGGGAAATAGT+TGG - 50583:3962-3981 MS.gene050826:CDS 35.0%
TTAGAGAATGGTGTGAATAG+TGG - 50583:4033-4052 MS.gene050826:CDS 35.0%
! AGGTAGTTGTTATTCGTTAC+CGG - 50583:3795-3814 MS.gene050826:CDS 35.0%
! ATGAGAAGTGTGTTTGAAAG+GGG - 50583:3952-3971 MS.gene050826:CDS 35.0%
! CTCGAATAAGTTGACCTAAT+CGG + 50583:4300-4319 None:intergenic 35.0%
! GAATGAGAAGTGTGTTTGAA+AGG - 50583:3950-3969 MS.gene050826:CDS 35.0%
AAACTCCTATTCCCACCTTT+AGG + 50583:4099-4118 None:intergenic 40.0%
AAATTGAGAATTACCGGGAC+CGG + 50583:4265-4284 None:intergenic 40.0%
ACACTTGATACTAGTAGTGG+TGG - 50583:4210-4229 MS.gene050826:CDS 40.0%
ATAGCATCTGCCACCAAATA+CGG - 50583:4542-4561 MS.gene050826:CDS 40.0%
ATGGTGATTACTAGGCCTAA+AGG - 50583:4081-4100 MS.gene050826:CDS 40.0%
ATTGCTAATTGGCGAATCTC+CGG - 50583:4243-4262 MS.gene050826:CDS 40.0%
CTGAAAGCCTTGACAAGTTA+TGG + 50583:3594-3613 None:intergenic 40.0%
GAGATTCGCCAATTAGCAAT+AGG + 50583:4243-4262 None:intergenic 40.0%
GATGATCAGTTACTACAACC+AGG - 50583:3745-3764 MS.gene050826:intron 40.0%
TGATGATCCAAGAGATGTGA+AGG - 50583:4487-4506 MS.gene050826:CDS 40.0%
TGATTACTAGGCCTAAAGGT+GGG - 50583:4085-4104 MS.gene050826:CDS 40.0%
TGGGAATAGGAGTTTGTGTA+TGG - 50583:4104-4123 MS.gene050826:CDS 40.0%
! GATGGTGAATTTTCTGCTGA+TGG - 50583:3718-3737 MS.gene050826:intron 40.0%
! GTCCCGGTAATTCTCAATTT+TGG - 50583:4265-4284 MS.gene050826:CDS 40.0%
! TGATTCATTTTCAGAGCCAG+AGG + 50583:3776-3795 None:intergenic 40.0%
!! TCTGGCTCTGAAAATGAATC+AGG - 50583:3775-3794 MS.gene050826:intron 40.0%
!!! GAAAGTTTTGAAGCTGATGG+TGG - 50583:3685-3704 MS.gene050826:intron 40.0%
GGACAAGTGTGACATACACA+TGG + 50583:3662-3681 None:intergenic 45.0%
GTGATTACTAGGCCTAAAGG+TGG - 50583:4084-4103 MS.gene050826:CDS 45.0%
TTCACTCCAACAACACTCAC+TGG + 50583:3850-3869 None:intergenic 45.0%
! ACAAAGGAAAGTGGTTTGGG+AGG - 50583:3904-3923 MS.gene050826:CDS 45.0%
! GAGAGAGTGATCAGAGTACT+GGG - 50583:4055-4074 MS.gene050826:CDS 45.0%
! TTGGTTCCAGTGAGTGTTGT+TGG - 50583:3841-3860 MS.gene050826:CDS 45.0%
!! AGAGAGTGATCAGAGTACTG+GGG - 50583:4056-4075 MS.gene050826:CDS 45.0%
AGTCGTGCCTTCACATCTCT+TGG + 50583:4497-4516 None:intergenic 50.0%
CTAGGCCTAAAGGTGGGAAT+AGG - 50583:4091-4110 MS.gene050826:CDS 50.0%
GGAGAGAGTGATCAGAGTAC+TGG - 50583:4054-4073 MS.gene050826:CDS 50.0%
GTAGGAGAAGAAGGAGGAGA+AGG - 50583:3926-3945 MS.gene050826:CDS 50.0%
GTTTGGGAGGTAGGAGAAGA+AGG - 50583:3917-3936 MS.gene050826:CDS 50.0%
! AGGAAAGTGGTTTGGGAGGT+AGG - 50583:3908-3927 MS.gene050826:CDS 50.0%
! CTGGGGTGATGGTGATTACT+AGG - 50583:4073-4092 MS.gene050826:CDS 50.0%
! GAAGGCACGACTCAAAGTGT+GGG - 50583:4505-4524 MS.gene050826:CDS 50.0%
! GATGGTGGTGATGAAGCAGA+TGG - 50583:3700-3719 MS.gene050826:intron 50.0%
! TGAAGGCACGACTCAAAGTG+TGG - 50583:4504-4523 MS.gene050826:CDS 50.0%
!! TGATCAGAGTACTGGGGTGA+TGG - 50583:4062-4081 MS.gene050826:CDS 50.0%
AATTGGCGAATCTCCGGTCC+CGG - 50583:4249-4268 MS.gene050826:CDS 55.0%
ACCAAACTCCTCCGTCTTGG+TGG + 50583:3826-3845 None:intergenic 55.0%
ACCACCAAGACGGAGGAGTT+TGG - 50583:3822-3841 MS.gene050826:CDS 55.0%
ACGACTCAAAGTGTGGGCAC+AGG - 50583:4511-4530 MS.gene050826:CDS 55.0%
CTACAACCAGGGTTGTCCTC+TGG - 50583:3757-3776 MS.gene050826:intron 55.0%
GGAACCAAACTCCTCCGTCT+TGG + 50583:3829-3848 None:intergenic 55.0%
TACCGGTGACACCACCAAGA+CGG - 50583:3812-3831 MS.gene050826:CDS 55.0%
TGGGAGGTAGGAGAAGAAGG+AGG - 50583:3920-3939 MS.gene050826:CDS 55.0%
TCAGAGCCAGAGGACAACCC+TGG + 50583:3766-3785 None:intergenic 60.0%
!! CTCCGTCTTGGTGGTGTCAC+CGG + 50583:3817-3836 None:intergenic 60.0%
CGGTGACACCACCAAGACGG+AGG - 50583:3815-3834 MS.gene050826:CDS 65.0%


Chromosome Type Strat End Strand Name
50583 gene 3487 4571 3487 ID=MS.gene050826
50583 mRNA 3487 4571 3487 ID=MS.gene050826.t1;Parent=MS.gene050826
50583 exon 3788 4571 3788 ID=MS.gene050826.t1.exon1;Parent=MS.gene050826.t1
50583 CDS 3788 4571 3788 ID=cds.MS.gene050826.t1;Parent=MS.gene050826.t1
50583 exon 3487 3572 3487 ID=MS.gene050826.t1.exon2;Parent=MS.gene050826.t1
50583 CDS 3487 3572 3487 ID=cds.MS.gene050826.t1;Parent=MS.gene050826.t1
Gene Sequence

>MS.gene050826

ATGGCTTCAGATGAGACCATGATCACAATTCAAGATGAAGACTTTGAAGGAGATGATGATGATTATATTAATGATGGGTTTGATAATCATCATAATCAAAATCACCATAACTTGTCAAGGCTTTCAGTTTGTACAAACAGCACTATATGTGATGATGTTGATAATCTAGCTTCCATGTGTATGTCACACTTGTCCATTGAAAGTTTTGAAGCTGATGGTGGTGATGAAGCAGATGGTGAATTTTCTGCTGATGGAAAAGATGATCAGTTACTACAACCAGGGTTGTCCTCTGGCTCTGAAAATGAATCAGGTAGTTGTTATTCGTTACCGGTGACACCACCAAGACGGAGGAGTTTGGTTCCAGTGAGTGTTGTTGGAGTGAAAGATTATGCAAGTGAGAATGAAGCAAGAAAAGAAACAAAGGAAAGTGGTTTGGGAGGTAGGAGAAGAAGGAGGAGAAGGAGAATGAGAAGTGTGTTTGAAAGGGGAAATAGTTGGGAGAATTTATGGGATCAGAAGAAGAAAATGATGAAAGAGAAAGAGAAATTAGAGAATGGTGTGAATAGTGGAGAGAGTGATCAGAGTACTGGGGTGATGGTGATTACTAGGCCTAAAGGTGGGAATAGGAGTTTGTGTATGGATTTGGAAGAAGTTAAAGCTTGTAGAGATCTTGGATTTGAGTTGGAACATGAAAGAATTTCTGCTGTTTCTTTCTCTAATTCAACACTTGATACTAGTAGTGGTGGTAATTCACCTATTGCTAATTGGCGAATCTCCGGTCCCGGTAATTCTCAATTTTGGTTCATATTTCCGATTAGGTCAACTTATTCGAGTTTATTTACTGTCATAAACATTATAAGATTGTTTGGCAGAGTTTATGAAAACAATTTATGACATGTTCGGAAGACTCGTAAGTTATTTCCATAATATATGATACGCGCTTAAGTTATAAGCGTTCGATTAATTCAAAATTTGACATTTTTGTTTTATATTATGTAGGTGATGATCCAAGAGATGTGAAGGCACGACTCAAAGTGTGGGCACAGGCAGTAGCAATAGCATCTGCCACCAAATACGGCTCATGA

Protein sequence

>MS.gene050826.t1

MASDETMITIQDEDFEGDDDDYINDGFDNHHNQNHHNLSRLSVCTNSTICDDVDNLASMCMSHLSIESFEADGGDEADGEFSADGKDDQLLQPGLSSGSENESGSCYSLPVTPPRRRSLVPVSVVGVKDYASENEARKETKESGLGGRRRRRRRRMRSVFERGNSWENLWDQKKKMMKEKEKLENGVNSGESDQSTGVMVITRPKGGNRSLCMDLEEVKACRDLGFELEHERISAVSFSNSTLDTSSGGNSPIANWRISGPGDDPRDVKARLKVWAQAVAIASATKYGS