Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059561.t1 | XP_013453168.1 | 93.1 | 375 | 11 | 2 | 1 | 361 | 1 | 374 | 4.60E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059561.t1 | F4JNX2 | 31.4 | 401 | 211 | 9 | 17 | 360 | 55 | 448 | 3.5e-40 | 167.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059561.t1 | A0A072UCK9 | 93.1 | 375 | 11 | 2 | 1 | 361 | 1 | 374 | 3.3e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058836 | MS.gene059561 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene068327 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene22814 | -0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene059561 | MS.gene27401 | 0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene059561 | MS.gene29233 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene059561 | MS.gene30753 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene059561 | MS.gene35808 | 0.833116 | 6.42E-56 | -1.69E-46 |
| MS.gene059561 | MS.gene35822 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene41757 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene43202 | 0.813742 | 2.19E-51 | -1.69E-46 |
| MS.gene059561 | MS.gene45193 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene059561 | MS.gene63530 | 0.80894 | 2.42E-50 | -1.69E-46 |
| MS.gene059561 | MS.gene69940 | 0.800251 | 1.57E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene70825 | 0.812109 | 5.00E-51 | -1.69E-46 |
| MS.gene059561 | MS.gene72093 | 0.975757 | 1.53E-140 | -1.69E-46 |
| MS.gene059561 | MS.gene77208 | 0.800969 | 1.12E-48 | -1.69E-46 |
| MS.gene059561 | MS.gene90431 | 0.813075 | 3.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059561.t1 | MTR_6g088680 | 93.067 | 375 | 11 | 2 | 1 | 361 | 1 | 374 | 0.0 | 708 |
| MS.gene059561.t1 | MTR_6g088680 | 91.216 | 296 | 11 | 2 | 1 | 282 | 1 | 295 | 0.0 | 547 |
| MS.gene059561.t1 | MTR_8g102510 | 65.617 | 381 | 105 | 8 | 1 | 361 | 1 | 375 | 7.19e-167 | 471 |
| MS.gene059561.t1 | MTR_8g102510 | 64.526 | 327 | 92 | 7 | 1 | 309 | 1 | 321 | 4.69e-137 | 393 |
| MS.gene059561.t1 | MTR_8g102510 | 62.333 | 300 | 89 | 7 | 1 | 282 | 1 | 294 | 1.14e-118 | 345 |
| MS.gene059561.t1 | MTR_6g088685 | 63.426 | 216 | 68 | 6 | 17 | 229 | 9 | 216 | 2.30e-81 | 247 |
| MS.gene059561.t1 | MTR_5g022450 | 34.301 | 379 | 184 | 9 | 24 | 346 | 62 | 431 | 3.29e-58 | 195 |
| MS.gene059561.t1 | MTR_4g073530 | 32.615 | 371 | 229 | 7 | 8 | 359 | 30 | 398 | 2.20e-56 | 189 |
| MS.gene059561.t1 | MTR_8g075350 | 34.367 | 387 | 182 | 8 | 27 | 346 | 71 | 452 | 3.20e-56 | 191 |
| MS.gene059561.t1 | MTR_5g022450 | 33.245 | 379 | 182 | 10 | 24 | 346 | 62 | 425 | 2.75e-52 | 180 |
| MS.gene059561.t1 | MTR_4g073530 | 29.467 | 319 | 206 | 6 | 8 | 309 | 33 | 349 | 8.43e-40 | 144 |
| MS.gene059561.t1 | MTR_8g466670 | 64.286 | 56 | 20 | 0 | 45 | 100 | 37 | 92 | 2.46e-18 | 82.4 |
| MS.gene059561.t1 | MTR_8g096220 | 64.706 | 51 | 18 | 0 | 45 | 95 | 5 | 55 | 5.19e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059561.t1 | AT4G15450 | 51.852 | 351 | 144 | 8 | 29 | 356 | 32 | 380 | 1.37e-119 | 351 |
| MS.gene059561.t1 | AT3G21600 | 51.685 | 356 | 153 | 7 | 18 | 356 | 20 | 373 | 5.38e-115 | 339 |
| MS.gene059561.t1 | AT4G15450 | 50.712 | 351 | 142 | 9 | 29 | 356 | 32 | 374 | 5.29e-114 | 336 |
| MS.gene059561.t1 | AT3G21600 | 52.976 | 336 | 141 | 6 | 18 | 338 | 20 | 353 | 1.51e-111 | 330 |
| MS.gene059561.t1 | AT4G35985 | 33.416 | 401 | 203 | 9 | 17 | 360 | 55 | 448 | 1.16e-60 | 201 |
| MS.gene059561.t1 | AT3G21600 | 43.946 | 223 | 108 | 6 | 18 | 225 | 20 | 240 | 1.12e-55 | 183 |
| MS.gene059561.t1 | AT2G17840 | 33.248 | 391 | 193 | 12 | 11 | 346 | 54 | 431 | 1.90e-55 | 188 |
| MS.gene059561.t1 | AT3G51250 | 31.300 | 377 | 194 | 7 | 27 | 344 | 70 | 440 | 8.09e-55 | 187 |
| MS.gene059561.t1 | AT4G35985 | 32.047 | 337 | 178 | 8 | 17 | 309 | 55 | 384 | 1.22e-45 | 160 |
| MS.gene059561.t1 | AT2G17840 | 30.791 | 354 | 177 | 12 | 11 | 309 | 54 | 394 | 2.83e-41 | 149 |
| MS.gene059561.t1 | AT3G51250 | 28.254 | 315 | 161 | 7 | 27 | 282 | 70 | 378 | 1.75e-34 | 130 |
| MS.gene059561.t1 | AT4G35985 | 30.396 | 227 | 116 | 7 | 17 | 203 | 55 | 279 | 3.71e-23 | 98.6 |
| MS.gene059561.t1 | AT3G21590 | 40.397 | 151 | 80 | 2 | 168 | 309 | 69 | 218 | 1.16e-19 | 87.0 |
| MS.gene059561.t1 | AT3G21590 | 35.433 | 127 | 72 | 2 | 168 | 285 | 69 | 194 | 7.35e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCTGAAGGACTATTT+AGG | 0.231243 | 6.4:+61831754 | None:intergenic |
| TTCCATTGGTGGTAGGGTTT+TGG | 0.236710 | 6.4:+61832945 | None:intergenic |
| TTAGCAACAATCATCAAAAT+AGG | 0.264832 | 6.4:-61832751 | MS.gene059561:CDS |
| AACACCATTGAGTAAAGATT+TGG | 0.276866 | 6.4:+61831383 | None:intergenic |
| ATTCATTCTGTTGTTCTTTG+TGG | 0.319852 | 6.4:+61831674 | None:intergenic |
| AGTCCTTCAGATAAGATAAA+TGG | 0.321082 | 6.4:-61831747 | MS.gene059561:CDS |
| TTTCTTGCTAAGGCTATTGC+TGG | 0.337164 | 6.4:-61832466 | MS.gene059561:CDS |
| AACCATTCTTGTTGCAGCTT+GGG | 0.343724 | 6.4:+61830719 | None:intergenic |
| AGAAGAAGAGTGATCTTGAT+TGG | 0.343736 | 6.4:-61832525 | MS.gene059561:CDS |
| GAGAAATTTGGAGAAGCTAT+AGG | 0.362475 | 6.4:+61832913 | None:intergenic |
| CAACAAGAATGGTTTCTAAC+AGG | 0.380521 | 6.4:-61830710 | MS.gene059561:intron |
| CCTCTCCTGGGAGCATCTTA+AGG | 0.391812 | 6.4:+61831301 | None:intergenic |
| AAGGCTATTGCTGGTGGAAC+TGG | 0.403743 | 6.4:-61832457 | MS.gene059561:CDS |
| TATAGGTATGGGGAAGAAGC+AGG | 0.403987 | 6.4:-61829973 | MS.gene059561:intron |
| GAAATTCTTATACAAATTCC+AGG | 0.407082 | 6.4:-61832865 | MS.gene059561:CDS |
| GAAGCCAACAAGACCTCTCC+TGG | 0.411064 | 6.4:+61831288 | None:intergenic |
| TGCAGTAGAAGCTGGATTGA+TGG | 0.416271 | 6.4:+61829873 | None:intergenic |
| AGATTATCAACTTTCACAAC+TGG | 0.421713 | 6.4:+61832694 | None:intergenic |
| GCTCCCAGGAGAGGTCTTGT+TGG | 0.427347 | 6.4:-61831292 | MS.gene059561:CDS |
| AAAGTAACACCATAGCTTAG+AGG | 0.460022 | 6.4:+61832631 | None:intergenic |
| AGGATGTAAAGTGTATCTAA+TGG | 0.460051 | 6.4:-61832845 | MS.gene059561:CDS |
| AAACCATTCTTGTTGCAGCT+TGG | 0.465341 | 6.4:+61830718 | None:intergenic |
| AGTGTAGCTGCAGTAGAAGC+TGG | 0.473361 | 6.4:+61829865 | None:intergenic |
| CTTGCTAAGGCTATTGCTGG+TGG | 0.481145 | 6.4:-61832463 | MS.gene059561:CDS |
| TTATCCAAATCTTTACTCAA+TGG | 0.483709 | 6.4:-61831387 | MS.gene059561:CDS |
| ATAGGTATGGGGAAGAAGCA+GGG | 0.484548 | 6.4:-61829972 | MS.gene059561:intron |
| CATTCTTGTTGCAGCTTGGG+AGG | 0.487768 | 6.4:+61830722 | None:intergenic |
| GAAGAAGAGTGATCTTGATT+GGG | 0.488678 | 6.4:-61832524 | MS.gene059561:CDS |
| AAATCTTTACTCAATGGTGT+TGG | 0.490241 | 6.4:-61831381 | MS.gene059561:CDS |
| GCTTAAATCTCAACCAGGGC+AGG | 0.499904 | 6.4:-61831328 | MS.gene059561:CDS |
| TCTTGTTGCAGCTTGGGAGG+TGG | 0.500890 | 6.4:+61830725 | None:intergenic |
| ATTAGATACACTTTACATCC+TGG | 0.504957 | 6.4:+61832847 | None:intergenic |
| CTCCCAAGCTGCAACAAGAA+TGG | 0.507194 | 6.4:-61830721 | MS.gene059561:CDS |
| CTCCAAAACCCTACCACCAA+TGG | 0.509528 | 6.4:-61832947 | MS.gene059561:CDS |
| TAGGTATGGGGAAGAAGCAG+GGG | 0.514222 | 6.4:-61829971 | MS.gene059561:CDS |
| GACATGCTGCTAATACTGCT+TGG | 0.519819 | 6.4:-61829918 | MS.gene059561:CDS |
| TTTACTTACTGACTGCATCA+AGG | 0.520023 | 6.4:+61831265 | None:intergenic |
| ATCTTAAGGAATGCCTGCCC+TGG | 0.521001 | 6.4:+61831315 | None:intergenic |
| CCTGGTTGAGATTTAAGCAC+AGG | 0.526473 | 6.4:+61831333 | None:intergenic |
| CCACCATTTATCTTATCTGA+AGG | 0.528195 | 6.4:+61831744 | None:intergenic |
| ATTTGGAGAAGCTATAGGAA+TGG | 0.551970 | 6.4:+61832918 | None:intergenic |
| CCTGTGCTTAAATCTCAACC+AGG | 0.555632 | 6.4:-61831333 | MS.gene059561:CDS |
| CTTTCACAGGCAATGAAAAG+AGG | 0.557368 | 6.4:+61832665 | None:intergenic |
| GATAAGATAAATGGTGGCAA+TGG | 0.557596 | 6.4:-61831738 | MS.gene059561:CDS |
| GGCTCATGACCATCTTTCAC+AGG | 0.561567 | 6.4:+61832652 | None:intergenic |
| AAAGTGTATCTAATGGATGA+AGG | 0.562070 | 6.4:-61832838 | MS.gene059561:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.565912 | 6.4:+61831266 | None:intergenic |
| GAATGAATGAAAACCTCATA+CGG | 0.566239 | 6.4:-61831659 | MS.gene059561:intron |
| GGTCATGAGCCTCTAAGCTA+TGG | 0.578398 | 6.4:-61832640 | MS.gene059561:CDS |
| GCATTCCTTAAGATGCTCCC+AGG | 0.593115 | 6.4:-61831306 | MS.gene059561:CDS |
| CCTTAAGATGCTCCCAGGAG+AGG | 0.605060 | 6.4:-61831301 | MS.gene059561:CDS |
| GATAAATGGTGGCAATGGCA+TGG | 0.606041 | 6.4:-61831733 | MS.gene059561:CDS |
| GTCTTGGTTATATAGGTATG+GGG | 0.612475 | 6.4:-61829983 | MS.gene059561:intron |
| GAGCATGTATTTGCAACTGC+AGG | 0.617638 | 6.4:-61829940 | MS.gene059561:CDS |
| AAGCCAACAAGACCTCTCCT+GGG | 0.622823 | 6.4:+61831289 | None:intergenic |
| CCTTCAGATAAGATAAATGG+TGG | 0.636170 | 6.4:-61831744 | MS.gene059561:CDS |
| ATGCTACCAGAAAATTCATG+TGG | 0.664358 | 6.4:+61832607 | None:intergenic |
| AATGGTGTTGGAATAGTGAG+TGG | 0.664953 | 6.4:-61831369 | MS.gene059561:CDS |
| CTGTGCTTAAATCTCAACCA+GGG | 0.724504 | 6.4:-61831332 | MS.gene059561:CDS |
| GAAGCACATGAACTTACACA+AGG | 0.731250 | 6.4:-61832814 | MS.gene059561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAAAATAGATTTGTT+TGG | - | chr6.4:61832354-61832373 | MS.gene059561:intron | 10.0% |
| !!! | TTTTTCAATTAAAATAATGA+GGG | + | chr6.4:61832495-61832514 | None:intergenic | 10.0% |
| !! | ACTAATTAATTGATTGATAT+TGG | + | chr6.4:61831925-61831944 | None:intergenic | 15.0% |
| !!! | ATTACTTTTCAAACAAAAAT+AGG | + | chr6.4:61830953-61830972 | None:intergenic | 15.0% |
| !!! | CTCATTATTTTAATTGAAAA+AGG | - | chr6.4:61832494-61832513 | MS.gene059561:CDS | 15.0% |
| !!! | CTTTTTCAATTAAAATAATG+AGG | + | chr6.4:61832496-61832515 | None:intergenic | 15.0% |
| !!! | TAATTTTGACAACATTATAA+TGG | + | chr6.4:61831885-61831904 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTTTAACAAG+TGG | - | chr6.4:61831955-61831974 | MS.gene059561:intron | 15.0% |
| !!! | TTCACTCTTTTTTATTTATT+TGG | + | chr6.4:61832732-61832751 | None:intergenic | 15.0% |
| !! | AACAATTAAAATTTCCTTTG+TGG | + | chr6.4:61832179-61832198 | None:intergenic | 20.0% |
| !! | GAAGAAAAAATGTATATGTA+AGG | + | chr6.4:61832251-61832270 | None:intergenic | 20.0% |
| !! | GCTATTTGGTATAAAATTTA+GGG | + | chr6.4:61830754-61830773 | None:intergenic | 20.0% |
| !! | GTTAAAAATATAAGATAGAG+TGG | + | chr6.4:61831952-61831971 | None:intergenic | 20.0% |
| !! | TAGTATTTCCTTAAAACTTA+TGG | + | chr6.4:61830576-61830595 | None:intergenic | 20.0% |
| !! | TATTTATGCTAATAATGTAG+TGG | + | chr6.4:61832146-61832165 | None:intergenic | 20.0% |
| !! | TTACAATTTCAACTACTAAA+AGG | - | chr6.4:61831849-61831868 | MS.gene059561:intron | 20.0% |
| !! | TTAGAACTTTATATGAAAAC+AGG | + | chr6.4:61830502-61830521 | None:intergenic | 20.0% |
| !!! | AAAACAAGAAAGTTTTAAGT+TGG | + | chr6.4:61830696-61830715 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTATTTATTTGGT+TGG | + | chr6.4:61832728-61832747 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCATTAGATATTT+TGG | - | chr6.4:61830522-61830541 | MS.gene059561:intron | 20.0% |
| !!! | TGATTATAATTTTCAACACT+TGG | + | chr6.4:61830305-61830324 | None:intergenic | 20.0% |
| !!! | TTAAAAGTTGTTTTGAAATC+AGG | - | chr6.4:61830993-61831012 | MS.gene059561:intron | 20.0% |
| !!! | TTAAGGGTAAAATTGTTATT+TGG | + | chr6.4:61832222-61832241 | None:intergenic | 20.0% |
| !!! | TTATAATCATTTTCTTGCTA+AGG | - | chr6.4:61830316-61830335 | MS.gene059561:intron | 20.0% |
| !!! | TTTTAGATTGAGCTAAAAAA+TGG | - | chr6.4:61830778-61830797 | MS.gene059561:intron | 20.0% |
| ! | AATAATGAGGGTAAAAAATG+AGG | + | chr6.4:61832483-61832502 | None:intergenic | 25.0% |
| ! | AATATATAGTTAGACCACAA+AGG | - | chr6.4:61832162-61832181 | MS.gene059561:intron | 25.0% |
| ! | AATTAAAGTACGTCAATCAA+AGG | - | chr6.4:61831809-61831828 | MS.gene059561:intron | 25.0% |
| ! | ACTATATTTGCTTCTTTAAC+CGG | + | chr6.4:61830617-61830636 | None:intergenic | 25.0% |
| ! | ACTTATATGTTATCCACTAT+AGG | - | chr6.4:61832635-61832654 | MS.gene059561:CDS | 25.0% |
| ! | AGATAGATATGATTAAAGTC+AGG | + | chr6.4:61831221-61831240 | None:intergenic | 25.0% |
| ! | ATAATGAGGGTAAAAAATGA+GGG | + | chr6.4:61832482-61832501 | None:intergenic | 25.0% |
| ! | ATATGTAAGGCAATCATTAA+GGG | + | chr6.4:61832238-61832257 | None:intergenic | 25.0% |
| ! | CAAATATAGTAGTATTGTGT+TGG | - | chr6.4:61830627-61830646 | MS.gene059561:intron | 25.0% |
| ! | GAAATTCTTATACAAATTCC+AGG | - | chr6.4:61829927-61829946 | MS.gene059561:CDS | 25.0% |
| ! | GGCTATTTGGTATAAAATTT+AGG | + | chr6.4:61830755-61830774 | None:intergenic | 25.0% |
| ! | GTAGTTGAAATTGTAAAAGT+CGG | + | chr6.4:61831845-61831864 | None:intergenic | 25.0% |
| ! | TATAAGTTCATGAGAGAATA+TGG | + | chr6.4:61832383-61832402 | None:intergenic | 25.0% |
| ! | TATATGTAAGGCAATCATTA+AGG | + | chr6.4:61832239-61832258 | None:intergenic | 25.0% |
| ! | TTAGCAACAATCATCAAAAT+AGG | - | chr6.4:61830041-61830060 | MS.gene059561:intron | 25.0% |
| ! | TTATCCAAATCTTTACTCAA+TGG | - | chr6.4:61831405-61831424 | MS.gene059561:CDS | 25.0% |
| !! | ATTTCTTGTCTAAGAGTTTT+TGG | + | chr6.4:61829912-61829931 | None:intergenic | 25.0% |
| !! | CATAGTAAAACTTTTTACAC+CGG | + | chr6.4:61831279-61831298 | None:intergenic | 25.0% |
| !! | CTAATATTTGCTTGCATTTT+TGG | + | chr6.4:61832964-61832983 | None:intergenic | 25.0% |
| !! | GAAAATTGCCATAAGTTTTA+AGG | - | chr6.4:61830565-61830584 | MS.gene059561:intron | 25.0% |
| !! | TTTGGTTGAATCTTTTCTTA+AGG | - | chr6.4:61830211-61830230 | MS.gene059561:intron | 25.0% |
| !!! | TGTTGAGTTTTTTAAGTGAT+TGG | + | chr6.4:61832591-61832610 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGTTGAGAAATT+TGG | + | chr6.4:61829894-61829913 | None:intergenic | 25.0% |
| !!! | TTTTAGCTCAATCTAAAAGT+TGG | + | chr6.4:61830776-61830795 | None:intergenic | 25.0% |
| !!! | TTTTGAAATCAGGTTCAAAA+AGG | - | chr6.4:61831003-61831022 | MS.gene059561:intron | 25.0% |
| AAATAGCCTATATCTGATAG+CGG | + | chr6.4:61832666-61832685 | None:intergenic | 30.0% | |
| AAATCTTTACTCAATGGTGT+TGG | - | chr6.4:61831411-61831430 | MS.gene059561:CDS | 30.0% | |
| AACACCATTGAGTAAAGATT+TGG | + | chr6.4:61831412-61831431 | None:intergenic | 30.0% | |
| AATCAAATAGAAGACTGAAC+AGG | + | chr6.4:61831769-61831788 | None:intergenic | 30.0% | |
| AGATTATCAACTTTCACAAC+TGG | + | chr6.4:61830101-61830120 | None:intergenic | 30.0% | |
| AGGATGTAAAGTGTATCTAA+TGG | - | chr6.4:61829947-61829966 | MS.gene059561:CDS | 30.0% | |
| AGTCCTTCAGATAAGATAAA+TGG | - | chr6.4:61831045-61831064 | MS.gene059561:intron | 30.0% | |
| ATTAGATACACTTTACATCC+TGG | + | chr6.4:61829948-61829967 | None:intergenic | 30.0% | |
| ATTCATTCTGTTGTTCTTTG+TGG | + | chr6.4:61831121-61831140 | None:intergenic | 30.0% | |
| CAATCTAAAAGTTGGCTATT+TGG | + | chr6.4:61830768-61830787 | None:intergenic | 30.0% | |
| CAATTTCAACTACTAAAAGG+TGG | - | chr6.4:61831852-61831871 | MS.gene059561:intron | 30.0% | |
| CATGAAAAACTAGTTAGAGT+CGG | + | chr6.4:61831340-61831359 | None:intergenic | 30.0% | |
| GAATGAATGAAAACCTCATA+CGG | - | chr6.4:61831133-61831152 | MS.gene059561:intron | 30.0% | |
| TCTTATCTGAAGGACTATTT+AGG | + | chr6.4:61831041-61831060 | None:intergenic | 30.0% | |
| TGTCTTGGTTATATAGGTAT+GGG | - | chr6.4:61832808-61832827 | MS.gene059561:CDS | 30.0% | |
| TTCTTTAGCCAGTAAAACAT+CGG | - | chr6.4:61830719-61830738 | MS.gene059561:CDS | 30.0% | |
| ! | AAAGTGTATCTAATGGATGA+AGG | - | chr6.4:61829954-61829973 | MS.gene059561:CDS | 30.0% |
| ! | ACTTTTCCACATGAATTTTC+TGG | - | chr6.4:61830179-61830198 | MS.gene059561:intron | 30.0% |
| ! | ATCTTTTAATGTCACAGACA+AGG | - | chr6.4:61832002-61832021 | MS.gene059561:intron | 30.0% |
| !! | ACTGGTTCATCTTTTGTTAA+AGG | + | chr6.4:61830083-61830102 | None:intergenic | 30.0% |
| !! | GTATTTTTGAATACCGTATG+AGG | + | chr6.4:61831149-61831168 | None:intergenic | 30.0% |
| !! | TACTCTAAGATCTTCAACTT+TGG | + | chr6.4:61831568-61831587 | None:intergenic | 30.0% |
| !! | TGGTTGGTAAATAATTAACG+TGG | + | chr6.4:61832712-61832731 | None:intergenic | 30.0% |
| !!! | AACCACGATTTGTTTTAAGT+CGG | - | chr6.4:61831707-61831726 | MS.gene059561:CDS | 30.0% |
| !!! | ATAGGAATGGTTTTTTCCAT+TGG | + | chr6.4:61829864-61829883 | None:intergenic | 30.0% |
| AAAAGTCATGCAGTTTCATG+CGG | + | chr6.4:61830925-61830944 | None:intergenic | 35.0% | |
| AAAGTAACACCATAGCTTAG+AGG | + | chr6.4:61830164-61830183 | None:intergenic | 35.0% | |
| AGAAGAAGAGTGATCTTGAT+TGG | - | chr6.4:61830267-61830286 | MS.gene059561:intron | 35.0% | |
| AGTGTGTGTCTTGGTTATAT+AGG | - | chr6.4:61832802-61832821 | MS.gene059561:CDS | 35.0% | |
| ATGCTACCAGAAAATTCATG+TGG | + | chr6.4:61830188-61830207 | None:intergenic | 35.0% | |
| ATTTGGAGAAGCTATAGGAA+TGG | + | chr6.4:61829877-61829896 | None:intergenic | 35.0% | |
| CAACAAGAATGGTTTCTAAC+AGG | - | chr6.4:61832082-61832101 | MS.gene059561:intron | 35.0% | |
| CCACCATTTATCTTATCTGA+AGG | + | chr6.4:61831051-61831070 | None:intergenic | 35.0% | |
| CCTTCAGATAAGATAAATGG+TGG | - | chr6.4:61831048-61831067 | MS.gene059561:intron | 35.0% | |
| CTGAAAAGACATACGAATGA+TGG | - | chr6.4:61831239-61831258 | MS.gene059561:intron | 35.0% | |
| GAAGAAGAGTGATCTTGATT+GGG | - | chr6.4:61830268-61830287 | MS.gene059561:intron | 35.0% | |
| GACACACACTCTTGTTAATT+AGG | + | chr6.4:61832792-61832811 | None:intergenic | 35.0% | |
| GAGAAATTTGGAGAAGCTAT+AGG | + | chr6.4:61829882-61829901 | None:intergenic | 35.0% | |
| GATAAGATAAATGGTGGCAA+TGG | - | chr6.4:61831054-61831073 | MS.gene059561:intron | 35.0% | |
| GTCTTGGTTATATAGGTATG+GGG | - | chr6.4:61832809-61832828 | MS.gene059561:CDS | 35.0% | |
| GTGTCTTGGTTATATAGGTA+TGG | - | chr6.4:61832807-61832826 | MS.gene059561:CDS | 35.0% | |
| GTTGTATATCCAAACCTGAT+TGG | + | chr6.4:61830402-61830421 | None:intergenic | 35.0% | |
| TAGTAATGCTTACACCAATC+AGG | - | chr6.4:61830385-61830404 | MS.gene059561:intron | 35.0% | |
| TGAAATCAGGTTCAAAAAGG+AGG | - | chr6.4:61831006-61831025 | MS.gene059561:intron | 35.0% | |
| TGAGACAGTGTAAAATAGTC+AGG | + | chr6.4:61831171-61831190 | None:intergenic | 35.0% | |
| ! | ATTAACAAGAGTGTGTGTCT+TGG | - | chr6.4:61832793-61832812 | MS.gene059561:CDS | 35.0% |
| ! | GATGGTTTGTAAATGATTGC+CGG | - | chr6.4:61831257-61831276 | MS.gene059561:intron | 35.0% |
| ! | TATGCTAACCGATGTTTTAC+TGG | + | chr6.4:61830730-61830749 | None:intergenic | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | + | chr6.4:61831529-61831548 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | + | chr6.4:61831530-61831549 | None:intergenic | 35.0% |
| ! | TTTTCATTGCCTGTGAAAGA+TGG | - | chr6.4:61830131-61830150 | MS.gene059561:intron | 35.0% |
| !! | ACATGAATTTTCTGGTAGCA+TGG | - | chr6.4:61830187-61830206 | MS.gene059561:intron | 35.0% |
| !! | GATGTTTTACTGGCTAAAGA+AGG | + | chr6.4:61830720-61830739 | None:intergenic | 35.0% |
| !!! | TTGTTTTAAGTCGGTGACAA+CGG | - | chr6.4:61831716-61831735 | MS.gene059561:CDS | 35.0% |
| AAACCATTCTTGTTGCAGCT+TGG | + | chr6.4:61832077-61832096 | None:intergenic | 40.0% | |
| AACCATTCTTGTTGCAGCTT+GGG | + | chr6.4:61832076-61832095 | None:intergenic | 40.0% | |
| ATGCTTACACCAATCAGGTT+TGG | - | chr6.4:61830390-61830409 | MS.gene059561:intron | 40.0% | |
| CTGTGCTTAAATCTCAACCA+GGG | - | chr6.4:61831460-61831479 | MS.gene059561:intron | 40.0% | |
| CTTTCACAGGCAATGAAAAG+AGG | + | chr6.4:61830130-61830149 | None:intergenic | 40.0% | |
| GAAGCACATGAACTTACACA+AGG | - | chr6.4:61829978-61829997 | MS.gene059561:intron | 40.0% | |
| GGAACTGGTCAGATTGTTAA+GGG | - | chr6.4:61830350-61830369 | MS.gene059561:intron | 40.0% | |
| TAGTGTTTACAGAACCTGAC+CGG | - | chr6.4:61831639-61831658 | MS.gene059561:intron | 40.0% | |
| TGGAACTGGTCAGATTGTTA+AGG | - | chr6.4:61830349-61830368 | MS.gene059561:intron | 40.0% | |
| TTTCTTGCTAAGGCTATTGC+TGG | - | chr6.4:61830326-61830345 | MS.gene059561:intron | 40.0% | |
| ! | AATGGTGTTGGAATAGTGAG+TGG | - | chr6.4:61831423-61831442 | MS.gene059561:intron | 40.0% |
| ! | TGGTCGGTTCAATTAGGAAT+CGG | - | chr6.4:61831664-61831683 | MS.gene059561:CDS | 40.0% |
| !! | ATTTTCTGGTAGCATGGCTT+TGG | - | chr6.4:61830193-61830212 | MS.gene059561:intron | 40.0% |
| !! | CACCGACTTAAAACAAATCG+TGG | + | chr6.4:61831712-61831731 | None:intergenic | 40.0% |
| !! | TCATTTTGATCAAGCGATCG+TGG | + | chr6.4:61830821-61830840 | None:intergenic | 40.0% |
| !!! | GGAATGGTTTTTTCCATTGG+TGG | + | chr6.4:61829861-61829880 | None:intergenic | 40.0% |
| !!! | GGTTTTTTCCATTGGTGGTA+GGG | + | chr6.4:61829856-61829875 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTCCATTGGTGGT+AGG | + | chr6.4:61829857-61829876 | None:intergenic | 40.0% |
| AAATACTAACCAATGCCCGC+AGG | - | chr6.4:61830588-61830607 | MS.gene059561:intron | 45.0% | |
| AATACTAACCAATGCCCGCA+GGG | - | chr6.4:61830589-61830608 | MS.gene059561:intron | 45.0% | |
| ATAGGTATGGGGAAGAAGCA+GGG | - | chr6.4:61832820-61832839 | MS.gene059561:CDS | 45.0% | |
| CCTGGTTGAGATTTAAGCAC+AGG | + | chr6.4:61831462-61831481 | None:intergenic | 45.0% | |
| CCTGTGCTTAAATCTCAACC+AGG | - | chr6.4:61831459-61831478 | MS.gene059561:intron | 45.0% | |
| GAACAGCGATTCAACCTAGA+TGG | - | chr6.4:61831738-61831757 | MS.gene059561:CDS | 45.0% | |
| GACATGCTGCTAATACTGCT+TGG | - | chr6.4:61832874-61832893 | MS.gene059561:CDS | 45.0% | |
| GAGCATGTATTTGCAACTGC+AGG | - | chr6.4:61832852-61832871 | MS.gene059561:CDS | 45.0% | |
| GATAAATGGTGGCAATGGCA+TGG | - | chr6.4:61831059-61831078 | MS.gene059561:intron | 45.0% | |
| TATAGGTATGGGGAAGAAGC+AGG | - | chr6.4:61832819-61832838 | MS.gene059561:CDS | 45.0% | |
| TGCAGTAGAAGCTGGATTGA+TGG | + | chr6.4:61832922-61832941 | None:intergenic | 45.0% | |
| ! | CTGAACAGGTTGAACCATCT+AGG | + | chr6.4:61831755-61831774 | None:intergenic | 45.0% |
| !! | TTCCATTGGTGGTAGGGTTT+TGG | + | chr6.4:61829850-61829869 | None:intergenic | 45.0% |
| !!! | CAAGGTTTTTGAAGCAGCAG+AGG | - | chr6.4:61832020-61832039 | MS.gene059561:intron | 45.0% |
| AAGCCAACAAGACCTCTCCT+GGG | + | chr6.4:61831506-61831525 | None:intergenic | 50.0% | |
| AAGGCTATTGCTGGTGGAAC+TGG | - | chr6.4:61830335-61830354 | MS.gene059561:intron | 50.0% | |
| AGTGTAGCTGCAGTAGAAGC+TGG | + | chr6.4:61832930-61832949 | None:intergenic | 50.0% | |
| ATCTTAAGGAATGCCTGCCC+TGG | + | chr6.4:61831480-61831499 | None:intergenic | 50.0% | |
| CATTCTTGTTGCAGCTTGGG+AGG | + | chr6.4:61832073-61832092 | None:intergenic | 50.0% | |
| CCTAATTGAACCGACCAGTC+CGG | + | chr6.4:61831661-61831680 | None:intergenic | 50.0% | |
| CTCCAAAACCCTACCACCAA+TGG | - | chr6.4:61829845-61829864 | MS.gene059561:CDS | 50.0% | |
| CTCCCAAGCTGCAACAAGAA+TGG | - | chr6.4:61832071-61832090 | MS.gene059561:intron | 50.0% | |
| CTTGCTAAGGCTATTGCTGG+TGG | - | chr6.4:61830329-61830348 | MS.gene059561:intron | 50.0% | |
| GCACGTCCGCTATCAGATAT+AGG | - | chr6.4:61832657-61832676 | MS.gene059561:CDS | 50.0% | |
| GCATTCCTTAAGATGCTCCC+AGG | - | chr6.4:61831486-61831505 | MS.gene059561:intron | 50.0% | |
| GCTTAAATCTCAACCAGGGC+AGG | - | chr6.4:61831464-61831483 | MS.gene059561:intron | 50.0% | |
| GGCTCATGACCATCTTTCAC+AGG | + | chr6.4:61830143-61830162 | None:intergenic | 50.0% | |
| GGTCATGAGCCTCTAAGCTA+TGG | - | chr6.4:61830152-61830171 | MS.gene059561:intron | 50.0% | |
| TAGGTATGGGGAAGAAGCAG+GGG | - | chr6.4:61832821-61832840 | MS.gene059561:CDS | 50.0% | |
| TTTACAGAACCTGACCGGAC+TGG | - | chr6.4:61831644-61831663 | MS.gene059561:intron | 50.0% | |
| CCTTAAGATGCTCCCAGGAG+AGG | - | chr6.4:61831491-61831510 | MS.gene059561:intron | 55.0% | |
| CTTCTTTAACCGGTGCCCTG+CGG | + | chr6.4:61830607-61830626 | None:intergenic | 55.0% | |
| GAAGCCAACAAGACCTCTCC+TGG | + | chr6.4:61831507-61831526 | None:intergenic | 55.0% | |
| TCTTGTTGCAGCTTGGGAGG+TGG | + | chr6.4:61832070-61832089 | None:intergenic | 55.0% | |
| TTCTTTAACCGGTGCCCTGC+GGG | + | chr6.4:61830606-61830625 | None:intergenic | 55.0% | |
| !! | CCGGACTGGTCGGTTCAATT+AGG | - | chr6.4:61831658-61831677 | MS.gene059561:intron | 55.0% |
| !! | CCTCTCCTGGGAGCATCTTA+AGG | + | chr6.4:61831494-61831513 | None:intergenic | 55.0% |
| !! | GATAGCGGACGTGCCTATAG+TGG | + | chr6.4:61832651-61832670 | None:intergenic | 55.0% |
| TTGAACCGACCAGTCCGGTC+AGG | + | chr6.4:61831656-61831675 | None:intergenic | 60.0% | |
| ! | GCTCCCAGGAGAGGTCTTGT+TGG | - | chr6.4:61831500-61831519 | MS.gene059561:intron | 60.0% |
| !! | CAGAACCTGACCGGACTGGT+CGG | - | chr6.4:61831648-61831667 | MS.gene059561:intron | 60.0% |
| AACCAATGCCCGCAGGGCAC+CGG | - | chr6.4:61830595-61830614 | MS.gene059561:intron | 65.0% | |
| AACCGGTGCCCTGCGGGCAT+TGG | + | chr6.4:61830600-61830619 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 61829831 | 61832983 | 61829831 | ID=MS.gene059561 |
| chr6.4 | mRNA | 61829831 | 61832983 | 61829831 | ID=MS.gene059561.t1;Parent=MS.gene059561 |
| chr6.4 | exon | 61832450 | 61832983 | 61832450 | ID=MS.gene059561.t1.exon1;Parent=MS.gene059561.t1 |
| chr6.4 | CDS | 61832450 | 61832983 | 61832450 | ID=cds.MS.gene059561.t1;Parent=MS.gene059561.t1 |
| chr6.4 | exon | 61831660 | 61831799 | 61831660 | ID=MS.gene059561.t1.exon2;Parent=MS.gene059561.t1 |
| chr6.4 | CDS | 61831660 | 61831799 | 61831660 | ID=cds.MS.gene059561.t1;Parent=MS.gene059561.t1 |
| chr6.4 | exon | 61831274 | 61831440 | 61831274 | ID=MS.gene059561.t1.exon3;Parent=MS.gene059561.t1 |
| chr6.4 | CDS | 61831274 | 61831440 | 61831274 | ID=cds.MS.gene059561.t1;Parent=MS.gene059561.t1 |
| chr6.4 | exon | 61830711 | 61830795 | 61830711 | ID=MS.gene059561.t1.exon4;Parent=MS.gene059561.t1 |
| chr6.4 | CDS | 61830711 | 61830795 | 61830711 | ID=cds.MS.gene059561.t1;Parent=MS.gene059561.t1 |
| chr6.4 | exon | 61829831 | 61829990 | 61829831 | ID=MS.gene059561.t1.exon5;Parent=MS.gene059561.t1 |
| chr6.4 | CDS | 61829831 | 61829990 | 61829831 | ID=cds.MS.gene059561.t1;Parent=MS.gene059561.t1 |
| Gene Sequence |
| Protein sequence |
