Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72405.t1 | XP_003590384.2 | 97.9 | 523 | 11 | 0 | 1 | 523 | 1 | 523 | 3.40E-298 | 1033.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72405.t1 | Q9LZR3 | 77.7 | 521 | 116 | 0 | 2 | 522 | 12 | 532 | 3.4e-246 | 852.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72405.t1 | G7I9A9 | 97.9 | 523 | 11 | 0 | 1 | 523 | 1 | 523 | 2.5e-298 | 1033.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene72405 | 0.806717 | 7.18E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene72405 | 0.805529 | 1.28E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene72405 | 0.800396 | 1.47E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72405.t1 | MTR_1g061510 | 97.897 | 523 | 11 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1064 |
| MS.gene72405.t1 | MTR_7g103590 | 85.577 | 520 | 75 | 0 | 3 | 522 | 12 | 531 | 0.0 | 961 |
| MS.gene72405.t1 | MTR_1g061270 | 85.277 | 523 | 76 | 1 | 1 | 523 | 1 | 522 | 0.0 | 948 |
| MS.gene72405.t1 | MTR_1g061280 | 84.895 | 523 | 79 | 0 | 1 | 523 | 1 | 523 | 0.0 | 942 |
| MS.gene72405.t1 | MTR_1g061340 | 82.983 | 523 | 89 | 0 | 1 | 523 | 1 | 523 | 0.0 | 927 |
| MS.gene72405.t1 | MTR_1g492700 | 75.432 | 521 | 127 | 1 | 4 | 523 | 10 | 530 | 0.0 | 829 |
| MS.gene72405.t1 | MTR_4g055520 | 66.731 | 520 | 160 | 2 | 14 | 520 | 23 | 542 | 0.0 | 763 |
| MS.gene72405.t1 | MTR_7g101950 | 63.725 | 510 | 182 | 2 | 15 | 522 | 21 | 529 | 0.0 | 720 |
| MS.gene72405.t1 | MTR_4g055520 | 69.481 | 462 | 136 | 1 | 14 | 470 | 23 | 484 | 0.0 | 711 |
| MS.gene72405.t1 | MTR_4g055520 | 68.664 | 434 | 123 | 2 | 100 | 520 | 29 | 462 | 0.0 | 655 |
| MS.gene72405.t1 | MTR_6g007807 | 47.564 | 431 | 220 | 2 | 18 | 448 | 139 | 563 | 6.11e-144 | 429 |
| MS.gene72405.t1 | MTR_3g103500 | 46.560 | 436 | 228 | 3 | 19 | 453 | 171 | 602 | 2.96e-140 | 421 |
| MS.gene72405.t1 | MTR_4g006010 | 46.485 | 441 | 233 | 2 | 10 | 450 | 162 | 599 | 7.96e-140 | 420 |
| MS.gene72405.t1 | MTR_3g109040 | 41.541 | 532 | 275 | 5 | 19 | 517 | 144 | 672 | 2.99e-138 | 415 |
| MS.gene72405.t1 | MTR_3g109040 | 41.541 | 532 | 275 | 5 | 19 | 517 | 155 | 683 | 6.06e-138 | 414 |
| MS.gene72405.t1 | MTR_8g012320 | 40.331 | 543 | 289 | 6 | 6 | 517 | 160 | 698 | 7.28e-132 | 399 |
| MS.gene72405.t1 | MTR_3g103500 | 49.221 | 321 | 159 | 2 | 19 | 338 | 171 | 488 | 3.75e-105 | 324 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72405.t1 | AT5G03760 | 77.735 | 521 | 116 | 0 | 2 | 522 | 12 | 532 | 0.0 | 884 |
| MS.gene72405.t1 | AT5G22740 | 69.790 | 523 | 156 | 1 | 2 | 522 | 12 | 534 | 0.0 | 806 |
| MS.gene72405.t1 | AT1G23480 | 67.366 | 524 | 169 | 2 | 1 | 522 | 32 | 555 | 0.0 | 772 |
| MS.gene72405.t1 | AT1G23480 | 67.366 | 524 | 169 | 2 | 1 | 522 | 32 | 555 | 0.0 | 772 |
| MS.gene72405.t1 | AT1G23480 | 70.600 | 483 | 141 | 1 | 41 | 522 | 1 | 483 | 0.0 | 748 |
| MS.gene72405.t1 | AT4G13410 | 61.896 | 517 | 192 | 1 | 2 | 518 | 26 | 537 | 0.0 | 728 |
| MS.gene72405.t1 | AT2G35650 | 66.535 | 505 | 166 | 2 | 19 | 523 | 51 | 552 | 0.0 | 723 |
| MS.gene72405.t1 | AT1G24070 | 61.850 | 519 | 196 | 2 | 1 | 518 | 35 | 552 | 0.0 | 710 |
| MS.gene72405.t1 | AT5G16190 | 64.600 | 500 | 176 | 1 | 19 | 518 | 6 | 504 | 0.0 | 706 |
| MS.gene72405.t1 | AT2G35650 | 67.702 | 483 | 153 | 2 | 41 | 523 | 1 | 480 | 0.0 | 702 |
| MS.gene72405.t1 | AT2G35650 | 67.702 | 483 | 153 | 2 | 41 | 523 | 1 | 480 | 0.0 | 702 |
| MS.gene72405.t1 | AT5G16190 | 60.600 | 533 | 176 | 2 | 19 | 518 | 6 | 537 | 0.0 | 689 |
| MS.gene72405.t1 | AT3G56000 | 59.375 | 512 | 201 | 5 | 17 | 523 | 20 | 529 | 0.0 | 659 |
| MS.gene72405.t1 | AT5G16190 | 68.349 | 436 | 138 | 0 | 19 | 454 | 6 | 441 | 0.0 | 659 |
| MS.gene72405.t1 | AT5G16190 | 65.991 | 444 | 150 | 1 | 75 | 518 | 1 | 443 | 0.0 | 646 |
| MS.gene72405.t1 | AT4G16590 | 56.480 | 517 | 190 | 2 | 2 | 518 | 39 | 520 | 0.0 | 632 |
| MS.gene72405.t1 | AT1G23480 | 70.769 | 390 | 114 | 0 | 133 | 522 | 21 | 410 | 0.0 | 611 |
| MS.gene72405.t1 | AT2G35650 | 67.089 | 395 | 126 | 3 | 130 | 523 | 3 | 394 | 0.0 | 563 |
| MS.gene72405.t1 | AT4G13410 | 63.255 | 381 | 135 | 1 | 138 | 518 | 1 | 376 | 0.0 | 548 |
| MS.gene72405.t1 | AT4G13410 | 63.215 | 367 | 127 | 2 | 2 | 367 | 26 | 385 | 0.0 | 525 |
| MS.gene72405.t1 | AT1G24070 | 63.342 | 371 | 129 | 3 | 1 | 367 | 35 | 402 | 3.70e-177 | 504 |
| MS.gene72405.t1 | AT4G31590 | 48.492 | 431 | 218 | 3 | 19 | 448 | 160 | 587 | 4.63e-144 | 431 |
| MS.gene72405.t1 | AT3G28180 | 48.037 | 433 | 219 | 4 | 18 | 450 | 135 | 561 | 1.10e-141 | 424 |
| MS.gene72405.t1 | AT2G24630 | 47.344 | 433 | 220 | 3 | 19 | 448 | 160 | 587 | 1.67e-140 | 421 |
| MS.gene72405.t1 | AT2G24630 | 47.344 | 433 | 220 | 3 | 19 | 448 | 160 | 587 | 1.67e-140 | 421 |
| MS.gene72405.t1 | AT3G07330 | 40.755 | 530 | 279 | 6 | 19 | 517 | 153 | 678 | 5.08e-139 | 417 |
| MS.gene72405.t1 | AT3G07330 | 40.755 | 530 | 279 | 6 | 19 | 517 | 153 | 678 | 5.08e-139 | 417 |
| MS.gene72405.t1 | AT4G07960 | 41.360 | 544 | 276 | 7 | 13 | 517 | 156 | 695 | 3.41e-135 | 408 |
| MS.gene72405.t1 | AT4G07960 | 41.360 | 544 | 276 | 7 | 13 | 517 | 156 | 695 | 3.41e-135 | 408 |
Find 119 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCATTTACTTGTCTTT+TGG | 0.164379 | 1.4:-50489078 | MS.gene72405:CDS |
| AACCAGAGAAACGTTATAAA+TGG | 0.223025 | 1.4:-50493422 | MS.gene72405:CDS |
| GAGTTCCAACAGCATTTAAA+AGG | 0.227638 | 1.4:+50489647 | None:intergenic |
| CAGTTGAATCATCAAGAATT+TGG | 0.232699 | 1.4:+50493149 | None:intergenic |
| CTTCTTGTTCAACTGTAAAA+TGG | 0.241342 | 1.4:+50490572 | None:intergenic |
| CTGAGGTTGTGGTCCCTAAA+TGG | 0.249551 | 1.4:-50489699 | MS.gene72405:CDS |
| CGAACAAAGGCAACAATTAT+TGG | 0.279571 | 1.4:-50489025 | MS.gene72405:CDS |
| TCTTCCTCTTACGCCTTCTT+TGG | 0.280026 | 1.4:-50490544 | MS.gene72405:CDS |
| TTCAACTGATCCAACAATTA+AGG | 0.316021 | 1.4:-50493134 | MS.gene72405:intron |
| TTATAAAGCAGGTGCATTAA+AGG | 0.318148 | 1.4:-50492628 | MS.gene72405:CDS |
| TTTATACCTCTCCAATTTGC+AGG | 0.325609 | 1.4:-50490196 | MS.gene72405:intron |
| TGAGGTTGTGGTCCCTAAAT+GGG | 0.330901 | 1.4:-50489698 | MS.gene72405:CDS |
| AGAAAATGGAACCTGCAAAT+TGG | 0.339704 | 1.4:+50490185 | None:intergenic |
| GTTTACAACTTGAGTTTGTT+TGG | 0.341848 | 1.4:-50493581 | MS.gene72405:CDS |
| AAATCCAAAAGACAAGTAAA+TGG | 0.343396 | 1.4:+50489074 | None:intergenic |
| ATTAAGGATGATGTTGAGTT+AGG | 0.351396 | 1.4:-50493393 | MS.gene72405:CDS |
| CGCCATAGAAAATCAGGTTC+TGG | 0.352319 | 1.4:+50492540 | None:intergenic |
| GCTTTCTTCATCATGGCATT+TGG | 0.357233 | 1.4:-50488589 | MS.gene72405:CDS |
| GTTCAAGCTCGCTGGAAGTT+TGG | 0.359127 | 1.4:-50492477 | MS.gene72405:intron |
| TGAACATAAAGTATGAAGTT+AGG | 0.363190 | 1.4:-50492665 | MS.gene72405:CDS |
| AGATTAGATACCTTAATTGT+TGG | 0.367872 | 1.4:+50493124 | None:intergenic |
| TTATAAATGGGAGACTATTA+AGG | 0.376031 | 1.4:-50493409 | MS.gene72405:CDS |
| CTTGTTAATAATCCTGATAT+TGG | 0.385746 | 1.4:-50492504 | MS.gene72405:CDS |
| CACCTTTGCTTCTCCATCTA+CGG | 0.394457 | 1.4:+50492688 | None:intergenic |
| CAGGTTTATCAGTTATCAAT+TGG | 0.395004 | 1.4:-50493214 | MS.gene72405:CDS |
| CACCGTTGAAGACATGGATT+TGG | 0.395380 | 1.4:-50490250 | MS.gene72405:CDS |
| TACGCCTTCTTTGGCTTCAA+TGG | 0.400112 | 1.4:-50490535 | MS.gene72405:intron |
| AAGCAAATGCTTGGATGTAT+AGG | 0.407575 | 1.4:+50488608 | None:intergenic |
| TCTATGTTGTTGGTACCTAT+AGG | 0.413453 | 1.4:+50489996 | None:intergenic |
| CAAGGAGCAAGGAATGGACT+TGG | 0.416869 | 1.4:-50493603 | MS.gene72405:CDS |
| TCCCATTTATAACGTTTCTC+TGG | 0.416994 | 1.4:+50493420 | None:intergenic |
| TCAGGTAGCATAACAGTTGC+AGG | 0.421024 | 1.4:+50489718 | None:intergenic |
| TACAAGTAGAATGCCGTAGA+TGG | 0.422350 | 1.4:-50492701 | MS.gene72405:CDS |
| CAAGTACTTTAAAAGCCTAT+AGG | 0.423182 | 1.4:-50490011 | MS.gene72405:CDS |
| ATCATGGCATTTGGATATGT+TGG | 0.427874 | 1.4:-50488580 | MS.gene72405:CDS |
| AAAACTTGGAGATGCTTTCA+AGG | 0.431283 | 1.4:-50488960 | MS.gene72405:CDS |
| AGCATTTGCTTTCTTCATCA+TGG | 0.437492 | 1.4:-50488596 | MS.gene72405:CDS |
| CACATGTTAGAACTTGTTGT+TGG | 0.439021 | 1.4:-50488694 | MS.gene72405:CDS |
| ACACAGGGACTGCGGGTGTA+TGG | 0.443842 | 1.4:-50490317 | MS.gene72405:intron |
| GCCAAGCTCTTCTAGGAGTT+GGG | 0.443905 | 1.4:+50488547 | None:intergenic |
| GCTTGAACAAGACCAATATC+AGG | 0.448353 | 1.4:+50492492 | None:intergenic |
| AGCATTTAAAAGGGTGATGA+TGG | 0.449189 | 1.4:+50489657 | None:intergenic |
| ATGCTTCGCCATAGAAAATC+AGG | 0.451340 | 1.4:+50492534 | None:intergenic |
| GACTCTCATGGCCTTCTGAT+AGG | 0.452108 | 1.4:-50493180 | MS.gene72405:CDS |
| TGCCAAGCTCTTCTAGGAGT+TGG | 0.455907 | 1.4:+50488546 | None:intergenic |
| TGCGGGTGTATGGAGAATTT+CGG | 0.459704 | 1.4:-50490307 | MS.gene72405:CDS |
| CTCAGCAATGGTACGATCAA+TGG | 0.460806 | 1.4:+50493543 | None:intergenic |
| GAAGTTAGGGACAATAGAAA+TGG | 0.465563 | 1.4:-50492651 | MS.gene72405:CDS |
| TTGGTCTTGTTCAAGCTCGC+TGG | 0.467480 | 1.4:-50492485 | MS.gene72405:CDS |
| GGTTGCTATGATCTTATGTA+TGG | 0.470728 | 1.4:-50488652 | MS.gene72405:CDS |
| GAGGTTGTGGTCCCTAAATG+GGG | 0.471099 | 1.4:-50489697 | MS.gene72405:CDS |
| ACCAGAGAAACGTTATAAAT+GGG | 0.471627 | 1.4:-50493421 | MS.gene72405:CDS |
| GGATTCTACCTCCTCTTATG+TGG | 0.472268 | 1.4:-50488673 | MS.gene72405:CDS |
| ACCTCTCTTTCATTATACAT+TGG | 0.479636 | 1.4:+50493336 | None:intergenic |
| TCAGGATTATTAACAAGGAA+AGG | 0.482430 | 1.4:+50492510 | None:intergenic |
| AGGAAACTCTAATTATCCTA+TGG | 0.482864 | 1.4:-50493373 | MS.gene72405:CDS |
| GAACATAAAGTATGAAGTTA+GGG | 0.483548 | 1.4:-50492664 | MS.gene72405:CDS |
| AAGGGTAAAGCCAGTGGTAA+AGG | 0.484276 | 1.4:-50488941 | MS.gene72405:CDS |
| GAAGCCAAAGAAGGCGTAAG+AGG | 0.484790 | 1.4:+50490540 | None:intergenic |
| TGTTATGCTACCTGAGGTTG+TGG | 0.485022 | 1.4:-50489710 | MS.gene72405:CDS |
| AAATTTCCATCCTTTGAGAC+TGG | 0.493376 | 1.4:+50490218 | None:intergenic |
| AATAGAAATGGTTATAAAGC+AGG | 0.495561 | 1.4:-50492639 | MS.gene72405:CDS |
| TTTACCATTGAAGCCAAAGA+AGG | 0.495858 | 1.4:+50490531 | None:intergenic |
| GATCATAGCAACCACATAAG+AGG | 0.496648 | 1.4:+50488662 | None:intergenic |
| CACATGACCATCTATGTTGT+TGG | 0.498138 | 1.4:+50489986 | None:intergenic |
| CATTGCAGAAAGTGTCTTTG+TGG | 0.498896 | 1.4:-50489828 | MS.gene72405:intron |
| CAGGATTATTAACAAGGAAA+GGG | 0.514946 | 1.4:+50492511 | None:intergenic |
| AGACTAGTAGAGTGAATGAA+TGG | 0.515266 | 1.4:-50488994 | MS.gene72405:CDS |
| TTCGATTTAGGATTGGAGAC+AGG | 0.515430 | 1.4:-50488907 | MS.gene72405:intron |
| ATTTCGGCGTTGAATGAAGC+TGG | 0.519277 | 1.4:-50490291 | MS.gene72405:CDS |
| GTTGCAGTGTTTCTTTGCCT+AGG | 0.519340 | 1.4:-50493519 | MS.gene72405:CDS |
| CATTTAGGGACCACAACCTC+AGG | 0.523346 | 1.4:+50489700 | None:intergenic |
| TTTAAAAGGGTGATGATGGA+AGG | 0.524608 | 1.4:+50489661 | None:intergenic |
| GTGCTGCATGTGGACTCTCA+TGG | 0.525755 | 1.4:-50493192 | MS.gene72405:CDS |
| ATAGGTACCAACAACATAGA+TGG | 0.528325 | 1.4:-50489993 | MS.gene72405:CDS |
| TGATGAAGAAAGCAAATGCT+TGG | 0.537639 | 1.4:+50488599 | None:intergenic |
| AGGCATGTCATTGATGATGT+TGG | 0.543816 | 1.4:-50493499 | MS.gene72405:CDS |
| AGGTTGTGGTCCCTAAATGG+GGG | 0.547705 | 1.4:-50489696 | MS.gene72405:CDS |
| AGTTCCAACAGCATTTAAAA+GGG | 0.548858 | 1.4:+50489648 | None:intergenic |
| GTTGGTTGAGAGAGTTTACA+TGG | 0.549566 | 1.4:-50493481 | MS.gene72405:CDS |
| GCTGTACGTGCCAGTCTCAA+AGG | 0.561858 | 1.4:-50490228 | MS.gene72405:CDS |
| CAATATCAGGATTATTAACA+AGG | 0.562297 | 1.4:+50492505 | None:intergenic |
| TAGAACCACCGTTGAAGACA+TGG | 0.566782 | 1.4:-50490256 | MS.gene72405:CDS |
| TTTACAGTTGAACAAGAAGT+GGG | 0.567042 | 1.4:-50490568 | MS.gene72405:CDS |
| CGTTGAATGAAGCTGGTGGA+TGG | 0.568883 | 1.4:-50490284 | MS.gene72405:CDS |
| ACATCATCAATGACATGCCT+AGG | 0.569766 | 1.4:+50493502 | None:intergenic |
| AGAAAACAAATGTGTTGATG+TGG | 0.571210 | 1.4:+50489755 | None:intergenic |
| TGTATAGGAATATGAAGAAG+TGG | 0.574836 | 1.4:+50488623 | None:intergenic |
| TGCCGTAGATGGAGAAGCAA+AGG | 0.578627 | 1.4:-50492690 | MS.gene72405:CDS |
| GGAACTTGAACAAGAACCAT+AGG | 0.581475 | 1.4:+50493357 | None:intergenic |
| TAAAGCAGGTGCATTAAAGG+AGG | 0.583658 | 1.4:-50492625 | MS.gene72405:CDS |
| AAACTTGGAGATGCTTTCAA+GGG | 0.583798 | 1.4:-50488959 | MS.gene72405:CDS |
| GTGCATGACACAGGGACTGC+GGG | 0.585429 | 1.4:-50490324 | MS.gene72405:intron |
| CTTTGTTCGATGAAGAGACA+TGG | 0.586812 | 1.4:+50489039 | None:intergenic |
| CAAATCCATGTCTTCAACGG+TGG | 0.589928 | 1.4:+50490251 | None:intergenic |
| TACGTGCCAGTCTCAAAGGA+TGG | 0.590155 | 1.4:-50490224 | MS.gene72405:CDS |
| TTATCAATTGGTGCTGCATG+TGG | 0.591381 | 1.4:-50493202 | MS.gene72405:CDS |
| TCCAATGTATAATGAAAGAG+AGG | 0.595576 | 1.4:-50493337 | MS.gene72405:intron |
| TTAAAAGGGTGATGATGGAA+GGG | 0.598070 | 1.4:+50489662 | None:intergenic |
| TAAATGCTGTTGGAACTCCA+AGG | 0.614918 | 1.4:-50489642 | MS.gene72405:intron |
| AGCCAAATCCATGTCTTCAA+CGG | 0.615167 | 1.4:+50490248 | None:intergenic |
| AACACTGCAACTCTCAGCAA+TGG | 0.618489 | 1.4:+50493531 | None:intergenic |
| CATAGCAACCACATAAGAGG+AGG | 0.619939 | 1.4:+50488665 | None:intergenic |
| AAAGCAGGTGCATTAAAGGA+GGG | 0.623735 | 1.4:-50492624 | MS.gene72405:CDS |
| CGGATGAATGTTTAATGACG+AGG | 0.624815 | 1.4:-50490618 | MS.gene72405:CDS |
| GAAAACAAATGTGTTGATGT+GGG | 0.631833 | 1.4:+50489756 | None:intergenic |
| ATGGAACCTGCAAATTGGAG+AGG | 0.632115 | 1.4:+50490190 | None:intergenic |
| AATGGAGATTGTCACAAACA+AGG | 0.635783 | 1.4:-50489935 | MS.gene72405:intron |
| CAACAACATAGATGGTCATG+TGG | 0.639998 | 1.4:-50489985 | MS.gene72405:CDS |
| TGGATGATGATCCTATCAGA+AGG | 0.643074 | 1.4:+50493169 | None:intergenic |
| TTGGTTGAGAGAGTTTACAT+GGG | 0.648583 | 1.4:-50493480 | MS.gene72405:CDS |
| AACAACATAGATGGTCATGT+GGG | 0.651980 | 1.4:-50489984 | MS.gene72405:CDS |
| GTTGCTATGATCTTATGTAT+GGG | 0.655525 | 1.4:-50488651 | MS.gene72405:CDS |
| CATGTCTCTTCATCGAACAA+AGG | 0.665625 | 1.4:-50489038 | MS.gene72405:CDS |
| GGTTGTGGTCCCTAAATGGG+GGG | 0.670300 | 1.4:-50489695 | MS.gene72405:CDS |
| TCGGCGTTGAATGAAGCTGG+TGG | 0.678886 | 1.4:-50490288 | MS.gene72405:CDS |
| GCTTTCAAGGGTAAAGCCAG+TGG | 0.687356 | 1.4:-50488947 | MS.gene72405:CDS |
| TGCAACTGTTATGCTACCTG+AGG | 0.691261 | 1.4:-50489716 | MS.gene72405:CDS |
| TGTGCATGACACAGGGACTG+CGG | 0.711800 | 1.4:-50490325 | MS.gene72405:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATTTATTGCTTAA+TGG | - | chr1.4:50492797-50492816 | MS.gene72405:intron | 10.0% |
| !! | AATTATTAATATTAAGTCAA+AGG | - | chr1.4:50489367-50489386 | MS.gene72405:intron | 10.0% |
| !! | TATATAAAAGTCATAATTAA+TGG | + | chr1.4:50491823-50491842 | None:intergenic | 10.0% |
| !!! | AATCTAAAATGTTTTATAAT+TGG | + | chr1.4:50490099-50490118 | None:intergenic | 10.0% |
| !!! | CTATTTTAAAAAATATTTGA+TGG | + | chr1.4:50489175-50489194 | None:intergenic | 10.0% |
| !!! | TTCTTTTCTTTTTTTTTTTT+TGG | - | chr1.4:50491276-50491295 | MS.gene72405:intron | 10.0% |
| !! | AATTGGTTAGAATTTATATA+AGG | - | chr1.4:50492923-50492942 | MS.gene72405:intron | 15.0% |
| !! | TAAACAATTCTATTTACATA+AGG | + | chr1.4:50492639-50492658 | None:intergenic | 15.0% |
| !! | TTATACAAATACATGAATTT+AGG | + | chr1.4:50492319-50492338 | None:intergenic | 15.0% |
| !! | TTTAAATAACATATCTTTGA+TGG | - | chr1.4:50490875-50490894 | MS.gene72405:intron | 15.0% |
| !!! | AAATATACTCTCTTTAATTT+TGG | + | chr1.4:50489904-50489923 | None:intergenic | 15.0% |
| !!! | AATATACTCTCTTTAATTTT+GGG | + | chr1.4:50489903-50489922 | None:intergenic | 15.0% |
| !!! | ATAAAACATTTTAGATTTTG+AGG | - | chr1.4:50490102-50490121 | MS.gene72405:intron | 15.0% |
| !!! | TTTACAGTTTTTTTTTTGTT+CGG | - | chr1.4:50492384-50492403 | MS.gene72405:intron | 15.0% |
| !!! | TTTTTTTCATCATCTTAATT+AGG | - | chr1.4:50491228-50491247 | MS.gene72405:intron | 15.0% |
| !! | AAGAAAACCATATGTTAAAA+TGG | + | chr1.4:50492100-50492119 | None:intergenic | 20.0% |
| !! | AATAGAATTGTTTATCTGTT+AGG | - | chr1.4:50492645-50492664 | MS.gene72405:CDS | 20.0% |
| !! | AATGAAATTCGTCTTTAATT+TGG | - | chr1.4:50489265-50489284 | MS.gene72405:intron | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr1.4:50490467-50490486 | MS.gene72405:intron | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | + | chr1.4:50490486-50490467 | None:intergenic | 20.0% |
| !! | AGAAGATGATTAAACAATAA+TGG | - | chr1.4:50491032-50491051 | MS.gene72405:intron | 20.0% |
| !! | ATAGAATTGTTTATCTGTTA+GGG | - | chr1.4:50492646-50492665 | MS.gene72405:CDS | 20.0% |
| !! | ATATAAAGTCACACTTTAAT+AGG | - | chr1.4:50490330-50490349 | MS.gene72405:intron | 20.0% |
| !! | CATTCAATTAATAATGTATG+TGG | + | chr1.4:50490456-50490475 | None:intergenic | 20.0% |
| !! | CTTATATTGTAAGGTTAAAT+TGG | - | chr1.4:50492906-50492925 | MS.gene72405:intron | 20.0% |
| !! | TACTATATATACATGTCTAA+AGG | + | chr1.4:50492755-50492774 | None:intergenic | 20.0% |
| !! | TATTTATTGCTTAATGGTTA+AGG | - | chr1.4:50492803-50492822 | MS.gene72405:intron | 20.0% |
| !! | TGATATATGAAACTTGTAAT+TGG | + | chr1.4:50490707-50490726 | None:intergenic | 20.0% |
| !! | TGATTAAACAATAATGGTAT+AGG | - | chr1.4:50491038-50491057 | MS.gene72405:intron | 20.0% |
| !! | TTAACCTTACAATATAAGTA+AGG | + | chr1.4:50492904-50492923 | None:intergenic | 20.0% |
| !! | TTCACTATAGTCATTTATAT+CGG | - | chr1.4:50489135-50489154 | MS.gene72405:intron | 20.0% |
| !! | TTGAGATTGAATTAAGAAAA+TGG | + | chr1.4:50492005-50492024 | None:intergenic | 20.0% |
| !! | TTTATTGTAATCAAACTCTA+TGG | + | chr1.4:50493061-50493080 | None:intergenic | 20.0% |
| !!! | ATATACTCTCTTTAATTTTG+GGG | + | chr1.4:50489902-50489921 | None:intergenic | 20.0% |
| !!! | ATATGTTATTTAAAGTGTGT+CGG | + | chr1.4:50490869-50490888 | None:intergenic | 20.0% |
| !!! | CATGTGCAATTTTAATTTAA+TGG | - | chr1.4:50491338-50491357 | MS.gene72405:intron | 20.0% |
| !!! | CTTTGAAATCAACATATAAA+TGG | - | chr1.4:50488927-50488946 | MS.gene72405:CDS | 20.0% |
| !!! | TGTGACTTTATATTTAACTT+TGG | + | chr1.4:50490323-50490342 | None:intergenic | 20.0% |
| !!! | TTAGTTTTCTCTTTATCTAA+AGG | - | chr1.4:50490729-50490748 | MS.gene72405:intron | 20.0% |
| !!! | TTTATATCGGTTTTTCATTT+CGG | - | chr1.4:50489148-50489167 | MS.gene72405:intron | 20.0% |
| !!! | TTTGACTTGAAGTTAAAATT+TGG | - | chr1.4:50489995-50490014 | MS.gene72405:CDS | 20.0% |
| ! | AAACAACAAAATCAAACTGT+CGG | - | chr1.4:50490923-50490942 | MS.gene72405:intron | 25.0% |
| ! | AAACTGTTTATTACTAGCAT+CGG | + | chr1.4:50492990-50493009 | None:intergenic | 25.0% |
| ! | AAATCCAAAAGACAAGTAAA+TGG | + | chr1.4:50493102-50493121 | None:intergenic | 25.0% |
| ! | AACTTGACTAATGTATTGAA+GGG | + | chr1.4:50492279-50492298 | None:intergenic | 25.0% |
| ! | AATAACATATCTTTGATGGA+AGG | - | chr1.4:50490879-50490898 | MS.gene72405:intron | 25.0% |
| ! | AATAGAAATGGTTATAAAGC+AGG | - | chr1.4:50489534-50489553 | MS.gene72405:intron | 25.0% |
| ! | AATTAAATTGCATCTAAGCA+AGG | - | chr1.4:50491474-50491493 | MS.gene72405:intron | 25.0% |
| ! | ACAAACAAACACAACAAAAT+AGG | + | chr1.4:50493442-50493461 | None:intergenic | 25.0% |
| ! | AGATTAGATACCTTAATTGT+TGG | + | chr1.4:50489052-50489071 | None:intergenic | 25.0% |
| ! | ATAAACAGTTACTGGAAAAT+AGG | + | chr1.4:50491369-50491388 | None:intergenic | 25.0% |
| ! | ATAATTAATGGTTTCTGCTA+CGG | + | chr1.4:50491811-50491830 | None:intergenic | 25.0% |
| ! | ATAGATACATAAACAGTTAC+TGG | + | chr1.4:50491377-50491396 | None:intergenic | 25.0% |
| ! | ATATGAAACTTGTAATTGGT+TGG | + | chr1.4:50490703-50490722 | None:intergenic | 25.0% |
| ! | ATCACAAATTAGAAGGAAAA+TGG | + | chr1.4:50491709-50491728 | None:intergenic | 25.0% |
| ! | CAATATCAGGATTATTAACA+AGG | + | chr1.4:50489671-50489690 | None:intergenic | 25.0% |
| ! | CTTGTTAATAATCCTGATAT+TGG | - | chr1.4:50489669-50489688 | MS.gene72405:CDS | 25.0% |
| ! | GAACATAAAGTATGAAGTTA+GGG | - | chr1.4:50489509-50489528 | MS.gene72405:intron | 25.0% |
| ! | GACTATAATCACAAATTAGA+AGG | + | chr1.4:50491716-50491735 | None:intergenic | 25.0% |
| ! | GATGCAATTTAATTGCTAAA+TGG | + | chr1.4:50491468-50491487 | None:intergenic | 25.0% |
| ! | GTAGTTGGAAATTTATCTAA+AGG | + | chr1.4:50491175-50491194 | None:intergenic | 25.0% |
| ! | TAAAAAGCTTGAATTAGAGA+CGG | + | chr1.4:50489335-50489354 | None:intergenic | 25.0% |
| ! | TAAACAGTTACTGGAAAATA+GGG | + | chr1.4:50491368-50491387 | None:intergenic | 25.0% |
| ! | TAACTTGACTAATGTATTGA+AGG | + | chr1.4:50492280-50492299 | None:intergenic | 25.0% |
| ! | TACATAAGGTTACATAAATG+TGG | + | chr1.4:50492625-50492644 | None:intergenic | 25.0% |
| ! | TAGATAAATTTCCAACTACT+AGG | - | chr1.4:50491176-50491195 | MS.gene72405:intron | 25.0% |
| ! | TATATACATGTCTAAAGGTT+AGG | + | chr1.4:50492750-50492769 | None:intergenic | 25.0% |
| ! | TATTAACTTCAGTACATGTT+TGG | - | chr1.4:50489792-50489811 | MS.gene72405:CDS | 25.0% |
| ! | TCTTCCTTACTTATATTGTA+AGG | - | chr1.4:50492897-50492916 | MS.gene72405:intron | 25.0% |
| ! | TCTTGATATATGATGTGAAT+TGG | - | chr1.4:50492116-50492135 | MS.gene72405:intron | 25.0% |
| ! | TGAACATAAAGTATGAAGTT+AGG | - | chr1.4:50489508-50489527 | MS.gene72405:intron | 25.0% |
| ! | TGATTTAAGAGATGTAGAAT+TGG | - | chr1.4:50489952-50489971 | MS.gene72405:CDS | 25.0% |
| ! | TGTGATTATAGTCATAGTTA+TGG | - | chr1.4:50491723-50491742 | MS.gene72405:intron | 25.0% |
| ! | TGTGTTAATTTAATGTGTGT+TGG | + | chr1.4:50490645-50490664 | None:intergenic | 25.0% |
| ! | TTAATGTGTGTTGGAAAATA+TGG | + | chr1.4:50490636-50490655 | None:intergenic | 25.0% |
| ! | TTATAAATGGGAGACTATTA+AGG | - | chr1.4:50488764-50488783 | MS.gene72405:intron | 25.0% |
| ! | TTTGTTTGTGTTCAATCATT+AGG | - | chr1.4:50493453-50493472 | MS.gene72405:CDS | 25.0% |
| !! | AAGTTAATGTGATTCTAAGA+AGG | + | chr1.4:50489739-50489758 | None:intergenic | 25.0% |
| !! | ATTTCTTTTGTGAAGTTGTT+TGG | - | chr1.4:50488723-50488742 | MS.gene72405:intron | 25.0% |
| !! | TAGACCAAAAGTGTAATTTA+AGG | + | chr1.4:50489105-50489124 | None:intergenic | 25.0% |
| !! | TCTTTTCAGAAAAATGGTAA+TGG | - | chr1.4:50492220-50492239 | MS.gene72405:intron | 25.0% |
| !! | TGGTTTATCATATACTGATT+AGG | + | chr1.4:50491448-50491467 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr1.4:50490491-50490510 | MS.gene72405:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr1.4:50490510-50490491 | None:intergenic | 25.0% |
| !!! | ATTGGTTCCATTTTAACATA+TGG | - | chr1.4:50492090-50492109 | MS.gene72405:intron | 25.0% |
| !!! | ATTTTTTTTTACCTCACAGT+TGG | - | chr1.4:50490018-50490037 | MS.gene72405:CDS | 25.0% |
| !!! | GTGCAATTTTAATTTAATGG+TGG | - | chr1.4:50491341-50491360 | MS.gene72405:intron | 25.0% |
| !!! | TACCATTTTTCTGAAAAGAT+TGG | + | chr1.4:50492219-50492238 | None:intergenic | 25.0% |
| !!! | TCTCATTGATTTAAAAAGCA+GGG | - | chr1.4:50492720-50492739 | MS.gene72405:intron | 25.0% |
| !!! | TTACAATAAACTTGTTTTGC+AGG | - | chr1.4:50493071-50493090 | MS.gene72405:intron | 25.0% |
| !!! | TTCTAATGCGACTTTTTTTT+TGG | + | chr1.4:50489224-50489243 | None:intergenic | 25.0% |
| !!! | TTTGAAGCTTCTTTTAATCA+CGG | - | chr1.4:50490233-50490252 | MS.gene72405:CDS | 25.0% |
| AAAATTACAAACCAACTGTG+AGG | + | chr1.4:50490032-50490051 | None:intergenic | 30.0% | |
| AAACAAATGTGGCTAATATG+CGG | - | chr1.4:50491785-50491804 | MS.gene72405:intron | 30.0% | |
| AACCAGAGAAACGTTATAAA+TGG | - | chr1.4:50488751-50488770 | MS.gene72405:intron | 30.0% | |
| AAGAAGAATATGAAGCTTCA+AGG | + | chr1.4:50492863-50492882 | None:intergenic | 30.0% | |
| AAGTCAAAGGACTAATGATA+GGG | - | chr1.4:50489380-50489399 | MS.gene72405:intron | 30.0% | |
| ACCAGAGAAACGTTATAAAT+GGG | - | chr1.4:50488752-50488771 | MS.gene72405:intron | 30.0% | |
| ACCTCTCTTTCATTATACAT+TGG | + | chr1.4:50488840-50488859 | None:intergenic | 30.0% | |
| AGAATGTTAGAGTTTAGTTG+TGG | - | chr1.4:50490964-50490983 | MS.gene72405:intron | 30.0% | |
| AGGAAACTCTAATTATCCTA+TGG | - | chr1.4:50488800-50488819 | MS.gene72405:intron | 30.0% | |
| AGGGCTAAGTTTGTATTAAA+AGG | - | chr1.4:50489399-50489418 | MS.gene72405:intron | 30.0% | |
| AGTGAACAAACAAAAAATGC+AGG | - | chr1.4:50489443-50489462 | MS.gene72405:intron | 30.0% | |
| AGTTCCAACAGCATTTAAAA+GGG | + | chr1.4:50492528-50492547 | None:intergenic | 30.0% | |
| ATAAATTATGTGCATGACAC+AGG | - | chr1.4:50491840-50491859 | MS.gene72405:intron | 30.0% | |
| ATATAAATGGTTCGAAATGC+AGG | - | chr1.4:50488940-50488959 | MS.gene72405:CDS | 30.0% | |
| ATTAAGGATGATGTTGAGTT+AGG | - | chr1.4:50488780-50488799 | MS.gene72405:intron | 30.0% | |
| ATTGGAGACAGGTATAAAAT+TGG | - | chr1.4:50493277-50493296 | MS.gene72405:intron | 30.0% | |
| CACACGTTAATATTTGCTTT+AGG | - | chr1.4:50492947-50492966 | MS.gene72405:intron | 30.0% | |
| CAGGATTATTAACAAGGAAA+GGG | + | chr1.4:50489665-50489684 | None:intergenic | 30.0% | |
| CAGGTTTATCAGTTATCAAT+TGG | - | chr1.4:50488959-50488978 | MS.gene72405:CDS | 30.0% | |
| CAGTTGAATCATCAAGAATT+TGG | + | chr1.4:50489027-50489046 | None:intergenic | 30.0% | |
| CTTCTTGTTCAACTGTAAAA+TGG | + | chr1.4:50491604-50491623 | None:intergenic | 30.0% | |
| GAATGCTAAGACTTCATTTA+TGG | - | chr1.4:50491069-50491088 | MS.gene72405:intron | 30.0% | |
| GAATTGATAAATCAACTGCT+TGG | + | chr1.4:50490178-50490197 | None:intergenic | 30.0% | |
| GTTGCTATGATCTTATGTAT+GGG | - | chr1.4:50493522-50493541 | MS.gene72405:CDS | 30.0% | |
| TAAATTATGTGCATGACACA+GGG | - | chr1.4:50491841-50491860 | MS.gene72405:intron | 30.0% | |
| TAAGTCAAAGGACTAATGAT+AGG | - | chr1.4:50489379-50489398 | MS.gene72405:intron | 30.0% | |
| TACGATAATGCAAACAAATG+TGG | - | chr1.4:50491774-50491793 | MS.gene72405:intron | 30.0% | |
| TCAGGATTATTAACAAGGAA+AGG | + | chr1.4:50489666-50489685 | None:intergenic | 30.0% | |
| TCCAATGTATAATGAAAGAG+AGG | - | chr1.4:50488836-50488855 | MS.gene72405:intron | 30.0% | |
| TGTATAGGAATATGAAGAAG+TGG | + | chr1.4:50493553-50493572 | None:intergenic | 30.0% | |
| TTACAGTGAACCATTAGATA+TGG | + | chr1.4:50492581-50492600 | None:intergenic | 30.0% | |
| TTATAAAGCAGGTGCATTAA+AGG | - | chr1.4:50489545-50489564 | MS.gene72405:intron | 30.0% | |
| TTCAACTGATCCAACAATTA+AGG | - | chr1.4:50489039-50489058 | MS.gene72405:CDS | 30.0% | |
| TTTACAGTTGAACAAGAAGT+GGG | - | chr1.4:50491605-50491624 | MS.gene72405:intron | 30.0% | |
| ! | AAAAAGCTTCGATTTAGGAT+TGG | - | chr1.4:50493259-50493278 | MS.gene72405:intron | 30.0% |
| ! | AGAAAACAAATGTGTTGATG+TGG | + | chr1.4:50492421-50492440 | None:intergenic | 30.0% |
| ! | AGCCAATCTTTTCAGAAAAA+TGG | - | chr1.4:50492214-50492233 | MS.gene72405:intron | 30.0% |
| ! | ATTCTAAGAAGGAGAAGAAA+AGG | + | chr1.4:50489728-50489747 | None:intergenic | 30.0% |
| ! | CAAGTACTTTAAAAGCCTAT+AGG | - | chr1.4:50492162-50492181 | MS.gene72405:intron | 30.0% |
| ! | CAGTTGATTTATCAATTCAG+CGG | - | chr1.4:50490180-50490199 | MS.gene72405:intron | 30.0% |
| ! | CTTCTTCTCACATTGAATTT+TGG | + | chr1.4:50492057-50492076 | None:intergenic | 30.0% |
| ! | GAAAACAAATGTGTTGATGT+GGG | + | chr1.4:50492420-50492439 | None:intergenic | 30.0% |
| ! | GTCACCTTAAATTACACTTT+TGG | - | chr1.4:50489098-50489117 | MS.gene72405:intron | 30.0% |
| ! | GTTTACAACTTGAGTTTGTT+TGG | - | chr1.4:50488592-50488611 | MS.gene72405:CDS | 30.0% |
| ! | TATAAGCACCCTTTTATTAG+AGG | + | chr1.4:50490569-50490588 | None:intergenic | 30.0% |
| ! | TATGATGTGAATTGGTCTAT+AGG | - | chr1.4:50492124-50492143 | MS.gene72405:intron | 30.0% |
| ! | TTTTACAGTTGAACAAGAAG+TGG | - | chr1.4:50491604-50491623 | MS.gene72405:intron | 30.0% |
| !! | AGAAGAGTGTTACATTACAT+TGG | - | chr1.4:50492072-50492091 | MS.gene72405:intron | 30.0% |
| !! | ATTCGTCTTTAATTTGGTCA+AGG | - | chr1.4:50489271-50489290 | MS.gene72405:intron | 30.0% |
| !! | ATTTTTCTGAAAAGATTGGC+TGG | + | chr1.4:50492215-50492234 | None:intergenic | 30.0% |
| !! | CTGATTAGGAATTGTTTTAC+AGG | + | chr1.4:50491434-50491453 | None:intergenic | 30.0% |
| !! | GTCTCATTGATTTAAAAAGC+AGG | - | chr1.4:50492719-50492738 | MS.gene72405:intron | 30.0% |
| !!! | AAAAGTGCACATTAGTTTTG+TGG | + | chr1.4:50489078-50489097 | None:intergenic | 30.0% |
| !!! | CTATAGGCTTTTAAAGTACT+TGG | + | chr1.4:50492164-50492183 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTCGGAAGATTG+TGG | - | chr1.4:50492394-50492413 | MS.gene72405:intron | 30.0% |
| AAAACTTGGAGATGCTTTCA+AGG | - | chr1.4:50493213-50493232 | MS.gene72405:CDS | 35.0% | |
| AAACTTGGAGATGCTTTCAA+GGG | - | chr1.4:50493214-50493233 | MS.gene72405:CDS | 35.0% | |
| AACAAAATCAAACTGTCGGT+AGG | - | chr1.4:50490927-50490946 | MS.gene72405:intron | 35.0% | |
| AACAACATAGATGGTCATGT+GGG | - | chr1.4:50492189-50492208 | MS.gene72405:intron | 35.0% | |
| AAGCAAATGCTTGGATGTAT+AGG | + | chr1.4:50493568-50493587 | None:intergenic | 35.0% | |
| AATGGAGATTGTCACAAACA+AGG | - | chr1.4:50492238-50492257 | MS.gene72405:intron | 35.0% | |
| ACCCTTTGCCTCTAATAAAA+GGG | - | chr1.4:50490558-50490577 | MS.gene72405:CDS | 35.0% | |
| ACTTCAGTACATGTTTGGAA+TGG | - | chr1.4:50489797-50489816 | MS.gene72405:CDS | 35.0% | |
| AGAAAATGGAACCTGCAAAT+TGG | + | chr1.4:50491991-50492010 | None:intergenic | 35.0% | |
| AGACTAGTAGAGTGAATGAA+TGG | - | chr1.4:50493179-50493198 | MS.gene72405:CDS | 35.0% | |
| AGATTGTCACAAACAAGGTA+AGG | - | chr1.4:50492243-50492262 | MS.gene72405:intron | 35.0% | |
| AGCATTTAAAAGGGTGATGA+TGG | + | chr1.4:50492519-50492538 | None:intergenic | 35.0% | |
| AGCATTTGCTTTCTTCATCA+TGG | - | chr1.4:50493577-50493596 | MS.gene72405:CDS | 35.0% | |
| AGGGCTCCTTTATAAAATGT+AGG | + | chr1.4:50490781-50490800 | None:intergenic | 35.0% | |
| ATAGGTACCAACAACATAGA+TGG | - | chr1.4:50492180-50492199 | MS.gene72405:intron | 35.0% | |
| ATCATGGCATTTGGATATGT+TGG | - | chr1.4:50493593-50493612 | MS.gene72405:CDS | 35.0% | |
| CAAACAAAAAATGCAGGAGT+TGG | - | chr1.4:50489449-50489468 | MS.gene72405:intron | 35.0% | |
| CACACTTTAATAGGTTGTGA+TGG | - | chr1.4:50490339-50490358 | MS.gene72405:intron | 35.0% | |
| CATGCGATGAGATTAGATTA+GGG | + | chr1.4:50491670-50491689 | None:intergenic | 35.0% | |
| CCGCATTCACTAAAAACAAA+GGG | + | chr1.4:50491538-50491557 | None:intergenic | 35.0% | |
| CGAACAAAGGCAACAATTAT+TGG | - | chr1.4:50493148-50493167 | MS.gene72405:CDS | 35.0% | |
| CTTTAGGCCTACAAATATGT+CGG | - | chr1.4:50492963-50492982 | MS.gene72405:intron | 35.0% | |
| GAACCATTAGATATGGTCTA+AGG | + | chr1.4:50492574-50492593 | None:intergenic | 35.0% | |
| GAAGTTAGGGACAATAGAAA+TGG | - | chr1.4:50489522-50489541 | MS.gene72405:intron | 35.0% | |
| GACTCAAAAAGCTTCGATTT+AGG | - | chr1.4:50493254-50493273 | MS.gene72405:intron | 35.0% | |
| GAGTTCCAACAGCATTTAAA+AGG | + | chr1.4:50492529-50492548 | None:intergenic | 35.0% | |
| GGATTGATTACTAGTGTGTT+TGG | + | chr1.4:50490302-50490321 | None:intergenic | 35.0% | |
| GGGCTCCTTTATAAAATGTA+GGG | + | chr1.4:50490780-50490799 | None:intergenic | 35.0% | |
| GGTTGCTATGATCTTATGTA+TGG | - | chr1.4:50493521-50493540 | MS.gene72405:CDS | 35.0% | |
| TACTAGTGTGTTTGGATTCA+AGG | + | chr1.4:50490294-50490313 | None:intergenic | 35.0% | |
| TCCCATTTATAACGTTTCTC+TGG | + | chr1.4:50488756-50488775 | None:intergenic | 35.0% | |
| TCCGCATTCACTAAAAACAA+AGG | + | chr1.4:50491539-50491558 | None:intergenic | 35.0% | |
| TCTATGTTGTTGGTACCTAT+AGG | + | chr1.4:50492180-50492199 | None:intergenic | 35.0% | |
| TGAAACTTGTAATTGGTTGG+TGG | + | chr1.4:50490700-50490719 | None:intergenic | 35.0% | |
| TGATGAAGAAAGCAAATGCT+TGG | + | chr1.4:50493577-50493596 | None:intergenic | 35.0% | |
| TGCTTATATATAGAGACGGA+GGG | - | chr1.4:50490581-50490600 | MS.gene72405:CDS | 35.0% | |
| TGGATTGTCACTGAAAAACT+TGG | - | chr1.4:50493199-50493218 | MS.gene72405:CDS | 35.0% | |
| TGTGTGTTGGAAAATATGGA+AGG | + | chr1.4:50490632-50490651 | None:intergenic | 35.0% | |
| TTGCCTTAGACCATATCTAA+TGG | - | chr1.4:50492568-50492587 | MS.gene72405:CDS | 35.0% | |
| TTGGTTGAGAGAGTTTACAT+GGG | - | chr1.4:50488693-50488712 | MS.gene72405:CDS | 35.0% | |
| TTTACCATTGAAGCCAAAGA+AGG | + | chr1.4:50491645-50491664 | None:intergenic | 35.0% | |
| TTTATACCTCTCCAATTTGC+AGG | - | chr1.4:50491977-50491996 | MS.gene72405:intron | 35.0% | |
| ! | AACCAGAACCTGATTTTCTA+TGG | - | chr1.4:50489631-50489650 | MS.gene72405:intron | 35.0% |
| ! | AAGCTTCTTTTAATCACGGT+GGG | - | chr1.4:50490237-50490256 | MS.gene72405:CDS | 35.0% |
| ! | ACCCTTTTATTAGAGGCAAA+GGG | + | chr1.4:50490562-50490581 | None:intergenic | 35.0% |
| ! | AGGGTGCTTATATATAGAGA+CGG | - | chr1.4:50490577-50490596 | MS.gene72405:CDS | 35.0% |
| ! | ATCACCCTTTTAAATGCTGT+TGG | - | chr1.4:50492521-50492540 | MS.gene72405:CDS | 35.0% |
| ! | CACTCCATTTACTTGTCTTT+TGG | - | chr1.4:50493095-50493114 | MS.gene72405:intron | 35.0% |
| ! | GAGAGGTGAATTTTCAATTC+TGG | - | chr1.4:50488853-50488872 | MS.gene72405:intron | 35.0% |
| ! | GTACGCCCTACATTTTATAA+AGG | - | chr1.4:50490772-50490791 | MS.gene72405:intron | 35.0% |
| !! | AAATTTCCATCCTTTGAGAC+TGG | + | chr1.4:50491958-50491977 | None:intergenic | 35.0% |
| !! | AAGCTCTAAAGTACCTGATT+AGG | - | chr1.4:50489867-50489886 | MS.gene72405:intron | 35.0% |
| !! | AATTGGTTGGTGGTTTGATA+GGG | + | chr1.4:50490690-50490709 | None:intergenic | 35.0% |
| !! | CACATGTTAGAACTTGTTGT+TGG | - | chr1.4:50493479-50493498 | MS.gene72405:CDS | 35.0% |
| !! | GCAAAGGGTGCTTATATATA+GGG | + | chr1.4:50490547-50490566 | None:intergenic | 35.0% |
| !! | TAATTGGTTGGTGGTTTGAT+AGG | + | chr1.4:50490691-50490710 | None:intergenic | 35.0% |
| !! | TTAAAAGGGTGATGATGGAA+GGG | + | chr1.4:50492514-50492533 | None:intergenic | 35.0% |
| !! | TTTAAAAGGGTGATGATGGA+AGG | + | chr1.4:50492515-50492534 | None:intergenic | 35.0% |
| !!! | CCCTTTGTTTTTAGTGAATG+CGG | - | chr1.4:50491535-50491554 | MS.gene72405:intron | 35.0% |
| AAAGCAGGTGCATTAAAGGA+GGG | - | chr1.4:50489549-50489568 | MS.gene72405:intron | 40.0% | |
| ACATCATCAATGACATGCCT+AGG | + | chr1.4:50488674-50488693 | None:intergenic | 40.0% | |
| AGCCAAATCCATGTCTTCAA+CGG | + | chr1.4:50491928-50491947 | None:intergenic | 40.0% | |
| ATATAAACAGCCCCCCATTT+AGG | + | chr1.4:50492491-50492510 | None:intergenic | 40.0% | |
| ATGACTATTACTACACCCTC+CGG | + | chr1.4:50490513-50490532 | None:intergenic | 40.0% | |
| ATGCTTCGCCATAGAAAATC+AGG | + | chr1.4:50489642-50489661 | None:intergenic | 40.0% | |
| CAACAACATAGATGGTCATG+TGG | - | chr1.4:50492188-50492207 | MS.gene72405:intron | 40.0% | |
| CACATGACCATCTATGTTGT+TGG | + | chr1.4:50492190-50492209 | None:intergenic | 40.0% | |
| CACCCTTTGCCTCTAATAAA+AGG | - | chr1.4:50490557-50490576 | MS.gene72405:CDS | 40.0% | |
| CACTATATCAGCCTAGTAGT+TGG | + | chr1.4:50491190-50491209 | None:intergenic | 40.0% | |
| CATGTCTCTTCATCGAACAA+AGG | - | chr1.4:50493135-50493154 | MS.gene72405:CDS | 40.0% | |
| CATTTATGGCTGCATTGAGT+TGG | - | chr1.4:50491083-50491102 | MS.gene72405:intron | 40.0% | |
| CCATGCGATGAGATTAGATT+AGG | + | chr1.4:50491671-50491690 | None:intergenic | 40.0% | |
| CCTAATCTAATCTCATCGCA+TGG | - | chr1.4:50491668-50491687 | MS.gene72405:intron | 40.0% | |
| CGCTACATTGCAGAAATCTA+GGG | + | chr1.4:50490800-50490819 | None:intergenic | 40.0% | |
| CGGATGAATGTTTAATGACG+AGG | - | chr1.4:50491555-50491574 | MS.gene72405:intron | 40.0% | |
| CTTTGTTCGATGAAGAGACA+TGG | + | chr1.4:50493137-50493156 | None:intergenic | 40.0% | |
| GATCATAGCAACCACATAAG+AGG | + | chr1.4:50493514-50493533 | None:intergenic | 40.0% | |
| GCTTGAACAAGACCAATATC+AGG | + | chr1.4:50489684-50489703 | None:intergenic | 40.0% | |
| GCTTTCTTCATCATGGCATT+TGG | - | chr1.4:50493584-50493603 | MS.gene72405:CDS | 40.0% | |
| GGAACTTGAACAAGAACCAT+AGG | + | chr1.4:50488819-50488838 | None:intergenic | 40.0% | |
| GGCTTAAATAGTATACCCTC+CGG | - | chr1.4:50490360-50490379 | MS.gene72405:intron | 40.0% | |
| GTGCTTATATATAGAGACGG+AGG | - | chr1.4:50490580-50490599 | MS.gene72405:CDS | 40.0% | |
| GTTGGTTGAGAGAGTTTACA+TGG | - | chr1.4:50488692-50488711 | MS.gene72405:CDS | 40.0% | |
| TAAAGCAGGTGCATTAAAGG+AGG | - | chr1.4:50489548-50489567 | MS.gene72405:intron | 40.0% | |
| TAAATGCTGTTGGAACTCCA+AGG | - | chr1.4:50492531-50492550 | MS.gene72405:CDS | 40.0% | |
| TACAAGTAGAATGCCGTAGA+TGG | - | chr1.4:50489472-50489491 | MS.gene72405:intron | 40.0% | |
| TACATGTCTAAAGGTTAGGC+TGG | + | chr1.4:50492746-50492765 | None:intergenic | 40.0% | |
| TATAAACAGCCCCCCATTTA+GGG | + | chr1.4:50492490-50492509 | None:intergenic | 40.0% | |
| TCGCTACATTGCAGAAATCT+AGG | + | chr1.4:50490801-50490820 | None:intergenic | 40.0% | |
| TGCTTATATATAGGGACGGA+GGG | + | chr1.4:50490539-50490558 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr1.4:50490495-50490514 | MS.gene72405:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1.4:50490514-50490495 | None:intergenic | 40.0% | |
| TGGATGATGATCCTATCAGA+AGG | + | chr1.4:50489007-50489026 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr1.4:50490494-50490513 | MS.gene72405:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1.4:50490513-50490494 | None:intergenic | 40.0% | |
| ! | AGGGTGCTTATATATAGGGA+CGG | + | chr1.4:50490543-50490562 | None:intergenic | 40.0% |
| ! | CACCCTTTTATTAGAGGCAA+AGG | + | chr1.4:50490563-50490582 | None:intergenic | 40.0% |
| ! | GAAGCTTCTTTTAATCACGG+TGG | - | chr1.4:50490236-50490255 | MS.gene72405:CDS | 40.0% |
| ! | TTCGATTTAGGATTGGAGAC+AGG | - | chr1.4:50493266-50493285 | MS.gene72405:intron | 40.0% |
| !! | AGGCATGTCATTGATGATGT+TGG | - | chr1.4:50488674-50488693 | MS.gene72405:CDS | 40.0% |
| !! | CATTGCAGAAAGTGTCTTTG+TGG | - | chr1.4:50492345-50492364 | MS.gene72405:intron | 40.0% |
| !! | GGCAAAGGGTGCTTATATAT+AGG | + | chr1.4:50490548-50490567 | None:intergenic | 40.0% |
| !! | TTATCAATTGGTGCTGCATG+TGG | - | chr1.4:50488971-50488990 | MS.gene72405:CDS | 40.0% |
| !!! | CTTTTTGAGTCCTTTACCAC+TGG | + | chr1.4:50493245-50493264 | None:intergenic | 40.0% |
| AACACTGCAACTCTCAGCAA+TGG | + | chr1.4:50488645-50488664 | None:intergenic | 45.0% | |
| AAGGGTAAAGCCAGTGGTAA+AGG | - | chr1.4:50493232-50493251 | MS.gene72405:intron | 45.0% | |
| AGGATCGTTGATGCTAGCAT+TGG | - | chr1.4:50489291-50489310 | MS.gene72405:intron | 45.0% | |
| ATGGAACCTGCAAATTGGAG+AGG | + | chr1.4:50491986-50492005 | None:intergenic | 45.0% | |
| CAAACGTTCGCAATATGCAG+GGG | - | chr1.4:50491115-50491134 | MS.gene72405:intron | 45.0% | |
| CAAATCCATGTCTTCAACGG+TGG | + | chr1.4:50491925-50491944 | None:intergenic | 45.0% | |
| CACCGTTGAAGACATGGATT+TGG | - | chr1.4:50491923-50491942 | MS.gene72405:intron | 45.0% | |
| CACCTTTGCTTCTCCATCTA+CGG | + | chr1.4:50489488-50489507 | None:intergenic | 45.0% | |
| CATAGCAACCACATAAGAGG+AGG | + | chr1.4:50493511-50493530 | None:intergenic | 45.0% | |
| CATCGGTCCGACATATTTGT+AGG | + | chr1.4:50492973-50492992 | None:intergenic | 45.0% | |
| CCAAACGTTCGCAATATGCA+GGG | - | chr1.4:50491114-50491133 | MS.gene72405:intron | 45.0% | |
| CGCCATAGAAAATCAGGTTC+TGG | + | chr1.4:50489636-50489655 | None:intergenic | 45.0% | |
| CTCAGCAATGGTACGATCAA+TGG | + | chr1.4:50488633-50488652 | None:intergenic | 45.0% | |
| GGATTCTACCTCCTCTTATG+TGG | - | chr1.4:50493500-50493519 | MS.gene72405:CDS | 45.0% | |
| GGGGTGAGATTAACCTAATC+AGG | + | chr1.4:50489883-50489902 | None:intergenic | 45.0% | |
| GTGCTTATATATAGGGACGG+AGG | + | chr1.4:50490540-50490559 | None:intergenic | 45.0% | |
| GTTGCAGTGTTTCTTTGCCT+AGG | - | chr1.4:50488654-50488673 | MS.gene72405:CDS | 45.0% | |
| TAGAACCACCGTTGAAGACA+TGG | - | chr1.4:50491917-50491936 | MS.gene72405:intron | 45.0% | |
| TCAGGTAGCATAACAGTTGC+AGG | + | chr1.4:50492458-50492477 | None:intergenic | 45.0% | |
| TCTTCCTCTTACGCCTTCTT+TGG | - | chr1.4:50491629-50491648 | MS.gene72405:intron | 45.0% | |
| TGAGGTTGTGGTCCCTAAAT+GGG | - | chr1.4:50492475-50492494 | MS.gene72405:intron | 45.0% | |
| TGCAACTGTTATGCTACCTG+AGG | - | chr1.4:50492457-50492476 | MS.gene72405:intron | 45.0% | |
| TGCGGGTGTATGGAGAATTT+CGG | - | chr1.4:50491866-50491885 | MS.gene72405:intron | 45.0% | |
| TGTTATGCTACCTGAGGTTG+TGG | - | chr1.4:50492463-50492482 | MS.gene72405:intron | 45.0% | |
| ! | ATTTCGGCGTTGAATGAAGC+TGG | - | chr1.4:50491882-50491901 | MS.gene72405:intron | 45.0% |
| ! | TACGCCTTCTTTGGCTTCAA+TGG | - | chr1.4:50491638-50491657 | MS.gene72405:intron | 45.0% |
| !! | GCTTTTCAAGGAGCAAGGAA+TGG | - | chr1.4:50488564-50488583 | MS.gene72405:CDS | 45.0% |
| !! | TGGATGCTTTTCAAGGAGCA+AGG | - | chr1.4:50488559-50488578 | MS.gene72405:CDS | 45.0% |
| !! | TTATTTATTTATTTATTAAG+TGG | + | chr1.4:50492686-50492705 | None:intergenic | 5.0% |
| AATCACGGTGGGAAATGCCT+GGG | - | chr1.4:50490248-50490267 | MS.gene72405:CDS | 50.0% | |
| AGGTTGTGGTCCCTAAATGG+GGG | - | chr1.4:50492477-50492496 | MS.gene72405:intron | 50.0% | |
| CATTTAGGGACCACAACCTC+AGG | + | chr1.4:50492476-50492495 | None:intergenic | 50.0% | |
| CCCTGCATATTGCGAACGTT+TGG | + | chr1.4:50491117-50491136 | None:intergenic | 50.0% | |
| CGTTGAATGAAGCTGGTGGA+TGG | - | chr1.4:50491889-50491908 | MS.gene72405:intron | 50.0% | |
| CTGAGGTTGTGGTCCCTAAA+TGG | - | chr1.4:50492474-50492493 | MS.gene72405:intron | 50.0% | |
| GACTCTCATGGCCTTCTGAT+AGG | - | chr1.4:50488993-50489012 | MS.gene72405:CDS | 50.0% | |
| GAGGTTGTGGTCCCTAAATG+GGG | - | chr1.4:50492476-50492495 | MS.gene72405:intron | 50.0% | |
| GCCAAACGTTCGCAATATGC+AGG | - | chr1.4:50491113-50491132 | MS.gene72405:intron | 50.0% | |
| GCTTTCAAGGGTAAAGCCAG+TGG | - | chr1.4:50493226-50493245 | MS.gene72405:intron | 50.0% | |
| GTTCAAGCTCGCTGGAAGTT+TGG | - | chr1.4:50489696-50489715 | MS.gene72405:CDS | 50.0% | |
| TAATCACGGTGGGAAATGCC+TGG | - | chr1.4:50490247-50490266 | MS.gene72405:CDS | 50.0% | |
| TACGTGCCAGTCTCAAAGGA+TGG | - | chr1.4:50491949-50491968 | MS.gene72405:intron | 50.0% | |
| TGCCGTAGATGGAGAAGCAA+AGG | - | chr1.4:50489483-50489502 | MS.gene72405:intron | 50.0% | |
| ! | AGCTAGCTTCTCCTCAAACG+TGG | + | chr1.4:50490213-50490232 | None:intergenic | 50.0% |
| ! | CAAGGAGCAAGGAATGGACT+TGG | - | chr1.4:50488570-50488589 | MS.gene72405:CDS | 50.0% |
| ! | GAAGCCAAAGAAGGCGTAAG+AGG | + | chr1.4:50491636-50491655 | None:intergenic | 50.0% |
| ! | GCTAGCTTCTCCTCAAACGT+GGG | + | chr1.4:50490212-50490231 | None:intergenic | 50.0% |
| !! | TTGGTCTTGTTCAAGCTCGC+TGG | - | chr1.4:50489688-50489707 | MS.gene72405:CDS | 50.0% |
| AAACACCTTTGCGCGTTCCC+AGG | + | chr1.4:50490268-50490287 | None:intergenic | 55.0% | |
| AAATGCCTGGGAACGCGCAA+AGG | - | chr1.4:50490260-50490279 | MS.gene72405:CDS | 55.0% | |
| GCGGCAAAAACCCACGTTTG+AGG | - | chr1.4:50490199-50490218 | MS.gene72405:CDS | 55.0% | |
| GCTGTACGTGCCAGTCTCAA+AGG | - | chr1.4:50491945-50491964 | MS.gene72405:intron | 55.0% | |
| GGTTGTGGTCCCTAAATGGG+GGG | - | chr1.4:50492478-50492497 | MS.gene72405:CDS | 55.0% | |
| GTGCTGCATGTGGACTCTCA+TGG | - | chr1.4:50488981-50489000 | MS.gene72405:CDS | 55.0% | |
| TGTGCATGACACAGGGACTG+CGG | - | chr1.4:50491848-50491867 | MS.gene72405:intron | 55.0% | |
| ! | TCGGCGTTGAATGAAGCTGG+TGG | - | chr1.4:50491885-50491904 | MS.gene72405:intron | 55.0% |
| ACACAGGGACTGCGGGTGTA+TGG | - | chr1.4:50491856-50491875 | MS.gene72405:intron | 60.0% | |
| GTGCATGACACAGGGACTGC+GGG | - | chr1.4:50491849-50491868 | MS.gene72405:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50488558 | 50493637 | 50488558 | ID=MS.gene72405 |
| chr1.4 | mRNA | 50488558 | 50493637 | 50488558 | ID=MS.gene72405.t1;Parent=MS.gene72405 |
| chr1.4 | exon | 50493338 | 50493637 | 50493338 | ID=MS.gene72405.t1.exon1;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50493338 | 50493637 | 50493338 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50493135 | 50493233 | 50493135 | ID=MS.gene72405.t1.exon2;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50493135 | 50493233 | 50493135 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50492478 | 50492730 | 50492478 | ID=MS.gene72405.t1.exon3;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50492478 | 50492730 | 50492478 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50490536 | 50490646 | 50490536 | ID=MS.gene72405.t1.exon4;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50490536 | 50490646 | 50490536 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50490197 | 50490333 | 50490197 | ID=MS.gene72405.t1.exon5;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50490197 | 50490333 | 50490197 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50489936 | 50490049 | 50489936 | ID=MS.gene72405.t1.exon6;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50489936 | 50490049 | 50489936 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50489643 | 50489842 | 50489643 | ID=MS.gene72405.t1.exon7;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50489643 | 50489842 | 50489643 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50488908 | 50489102 | 50488908 | ID=MS.gene72405.t1.exon8;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50488908 | 50489102 | 50488908 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| chr1.4 | exon | 50488558 | 50488720 | 50488558 | ID=MS.gene72405.t1.exon9;Parent=MS.gene72405.t1 |
| chr1.4 | CDS | 50488558 | 50488720 | 50488558 | ID=cds.MS.gene72405.t1;Parent=MS.gene72405.t1 |
| Gene Sequence |
| Protein sequence |
