Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72691.t1 | ABH10138.1 | 97.4 | 351 | 9 | 0 | 1 | 351 | 1 | 351 | 7.30E-194 | 686.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72691.t1 | Q39242 | 83.4 | 308 | 51 | 0 | 44 | 351 | 54 | 361 | 8.0e-149 | 528.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72691.t1 | A6XJ26 | 97.4 | 351 | 9 | 0 | 1 | 351 | 1 | 351 | 5.2e-194 | 686.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88347 | MS.gene72691 | PPI |
| MS.gene72691 | MS.gene74672 | PPI |
| MS.gene72691 | MS.gene019928 | PPI |
| MS.gene72691 | MS.gene86513 | PPI |
| MS.gene72691 | MS.gene67036 | PPI |
| MS.gene72691 | MS.gene82505 | PPI |
| MS.gene72691 | MS.gene88347 | PPI |
| MS.gene72691 | MS.gene65554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72691.t1 | MTR_5g024900 | 96.893 | 354 | 8 | 1 | 1 | 351 | 1 | 354 | 0.0 | 706 |
| MS.gene72691.t1 | MTR_1g053160 | 52.492 | 301 | 137 | 3 | 51 | 351 | 71 | 365 | 2.93e-107 | 324 |
| MS.gene72691.t1 | MTR_6g034475 | 77.358 | 53 | 12 | 0 | 155 | 207 | 2 | 54 | 8.19e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72691.t1 | AT2G17420 | 83.442 | 308 | 51 | 0 | 44 | 351 | 54 | 361 | 0.0 | 536 |
| MS.gene72691.t1 | AT2G17420 | 83.442 | 308 | 51 | 0 | 44 | 351 | 54 | 361 | 0.0 | 536 |
| MS.gene72691.t1 | AT4G35460 | 82.468 | 308 | 54 | 0 | 44 | 351 | 46 | 353 | 0.0 | 508 |
| MS.gene72691.t1 | AT2G41680 | 51.495 | 301 | 140 | 3 | 51 | 351 | 86 | 380 | 3.47e-108 | 327 |
Find 120 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGATTTGAAGGTTTC+TGG | 0.081370 | 5.4:-16101905 | MS.gene72691:CDS |
| TCACCGAAGGGATACGTTTC+GGG | 0.179879 | 5.4:-16102068 | MS.gene72691:CDS |
| CGTCAACAGTCCGCTAAATT+TGG | 0.205219 | 5.4:-16102403 | MS.gene72691:CDS |
| TCTGGGTTGTTCTTTGCAAT+TGG | 0.250878 | 5.4:-16101887 | MS.gene72691:CDS |
| TTTGAGTAATGATAAGATTA+AGG | 0.284692 | 5.4:-16102020 | MS.gene72691:CDS |
| CTTCACCGAAACGGTTTCTA+AGG | 0.285123 | 5.4:-16102371 | MS.gene72691:CDS |
| TCAATGGTGGTTGAGGCTTT+TGG | 0.297880 | 5.4:-16101986 | MS.gene72691:CDS |
| TTCGGCACGGGCGGCGTATA+CGG | 0.300560 | 5.4:+16102561 | None:intergenic |
| TACGGCGGCGGTGTGGGCGG+CGG | 0.303675 | 5.4:+16102579 | None:intergenic |
| ATGATAAGATTAAGGTGATT+TGG | 0.304348 | 5.4:-16102012 | MS.gene72691:CDS |
| ACGGCGGCGGTGTGGGCGGC+GGG | 0.304944 | 5.4:+16102580 | None:intergenic |
| CTGGGTTGTTCTTTGCAATT+GGG | 0.312403 | 5.4:-16101886 | MS.gene72691:CDS |
| GAATCAGTGAAAACCCTAAA+AGG | 0.351127 | 5.4:+16102331 | None:intergenic |
| GAGGATTCCGTCGGGGAAAC+CGG | 0.355019 | 5.4:+16102450 | None:intergenic |
| TTTCTGATTTGAAGGTTTCT+GGG | 0.369720 | 5.4:-16101904 | MS.gene72691:CDS |
| TTCACCGAAGGGATACGTTT+CGG | 0.374958 | 5.4:-16102069 | MS.gene72691:CDS |
| GTGATGGTCCTAATGGTTAC+TGG | 0.379009 | 5.4:-16102234 | MS.gene72691:CDS |
| GGCGTATACGGCGGCGGTGT+GGG | 0.386511 | 5.4:+16102573 | None:intergenic |
| CTTTGCAATTGGGCATGAAC+CGG | 0.389279 | 5.4:-16101876 | MS.gene72691:CDS |
| CGGCGGCGGTGTGGGCGGCG+GGG | 0.394828 | 5.4:+16102581 | None:intergenic |
| ATGGGGAGAATAAGAAGCTT+GGG | 0.403667 | 5.4:-16101961 | MS.gene72691:CDS |
| GTGGTGGTGAGTTGGCCTCC+TGG | 0.410776 | 5.4:+16102493 | None:intergenic |
| AAAAGAGGTTTCTGATTTGA+AGG | 0.417001 | 5.4:-16101912 | MS.gene72691:CDS |
| CAAATTTAGCGGACTGTTGA+CGG | 0.417215 | 5.4:+16102404 | None:intergenic |
| GCTATTACTGCTGCTGGATC+TGG | 0.422298 | 5.4:-16101722 | MS.gene72691:intron |
| AGAGTGATCCAGTTGTGGTT+TGG | 0.425091 | 5.4:+16102733 | None:intergenic |
| TAAGGTGATTTGGAATTCAA+TGG | 0.429889 | 5.4:-16102002 | MS.gene72691:CDS |
| GATCTTTCGTAACAAACCTT+TGG | 0.430114 | 5.4:-16102167 | MS.gene72691:CDS |
| ACGTACTGTTGAAGCTGATT+CGG | 0.431276 | 5.4:-16102308 | MS.gene72691:CDS |
| AGGCGCGTTGAGTGGAGATT+AGG | 0.433276 | 5.4:+16102692 | None:intergenic |
| CCGTTCACCGGCTCCGGTGA+TGG | 0.440754 | 5.4:-16102250 | MS.gene72691:CDS |
| GAAGAGGATTGGTTTGAGTT+CGG | 0.442464 | 5.4:+16102543 | None:intergenic |
| CGGCGTATACGGCGGCGGTG+TGG | 0.452801 | 5.4:+16102572 | None:intergenic |
| CCACGGTTCCAGTAACCATT+AGG | 0.457528 | 5.4:+16102226 | None:intergenic |
| CGGTTACCGTTCACCGGCTC+CGG | 0.460678 | 5.4:-16102256 | MS.gene72691:CDS |
| GGCTCCGGTGATGGTCCTAA+TGG | 0.460947 | 5.4:-16102241 | MS.gene72691:CDS |
| AGGATTCCGTCGGGGAAACC+GGG | 0.463354 | 5.4:+16102451 | None:intergenic |
| AGTCATGGTGGCGGAGGATA+CGG | 0.467664 | 5.4:+16102657 | None:intergenic |
| GAAATTCTCGACGTCGGTTG+TGG | 0.469174 | 5.4:+16102474 | None:intergenic |
| GAGGGTGGTGTTGTCAGTCA+TGG | 0.470209 | 5.4:+16102642 | None:intergenic |
| ATCCATCCTTCGAAGAGGAT+TGG | 0.474710 | 5.4:+16102532 | None:intergenic |
| CAGTTAGAGCTTGATTCTGA+TGG | 0.478897 | 5.4:-16101833 | MS.gene72691:CDS |
| CCTAATGGTTACTGGAACCG+TGG | 0.480720 | 5.4:-16102226 | MS.gene72691:CDS |
| ATCAACCTTAGAAACCGTTT+CGG | 0.485663 | 5.4:+16102366 | None:intergenic |
| GGGTATGTTGTGACGAAGCC+GGG | 0.487150 | 5.4:-16101812 | MS.gene72691:CDS |
| AATCCTCGGCGGCGAACTCA+TGG | 0.487221 | 5.4:-16102434 | MS.gene72691:CDS |
| ATGGCCAACGACATCGCTCC+AGG | 0.490028 | 5.4:-16102511 | MS.gene72691:CDS |
| AACCAATCCTCTTCGAAGGA+TGG | 0.495853 | 5.4:-16102534 | MS.gene72691:CDS |
| AACCGTTTCGGTGAAGATCT+CGG | 0.497670 | 5.4:+16102378 | None:intergenic |
| GGTTTCCCCGACGGAATCCT+CGG | 0.502701 | 5.4:-16102448 | MS.gene72691:CDS |
| TTGGAATTCAATGGTGGTTG+AGG | 0.502804 | 5.4:-16101993 | MS.gene72691:CDS |
| GATGGGGAGAATAAGAAGCT+TGG | 0.505336 | 5.4:-16101962 | MS.gene72691:CDS |
| ACCGACGTCGAGAATTTCCC+CGG | 0.505352 | 5.4:-16102469 | MS.gene72691:CDS |
| GGGTTTGAAGGTGGAGAATG+TGG | 0.506859 | 5.4:-16101939 | MS.gene72691:CDS |
| ACGGGCGGCGTATACGGCGG+CGG | 0.506979 | 5.4:+16102567 | None:intergenic |
| AGACAAGCTATTACTGCTGC+TGG | 0.508524 | 5.4:-16101728 | MS.gene72691:CDS |
| ATTCTCGACGTCGGTTGTGG+TGG | 0.510476 | 5.4:+16102477 | None:intergenic |
| GGAGGATACGGCGGAAGAGA+CGG | 0.513846 | 5.4:+16102669 | None:intergenic |
| AAAACTAAGCTCTGCATCAT+CGG | 0.514903 | 5.4:-16102610 | MS.gene72691:CDS |
| CCTTTGGCAGTGATCGGTGG+TGG | 0.516096 | 5.4:-16102151 | MS.gene72691:CDS |
| AACCGAGATCTTCACCGAAA+CGG | 0.516755 | 5.4:-16102380 | MS.gene72691:CDS |
| GCGAAACGGTTACCGTTCAC+CGG | 0.516776 | 5.4:-16102262 | MS.gene72691:CDS |
| GATTGGTTTGAGTTCGGCAC+GGG | 0.519127 | 5.4:+16102549 | None:intergenic |
| TCGCCGCCGAGGATTCCGTC+GGG | 0.521460 | 5.4:+16102442 | None:intergenic |
| TGGTTTGAGTTCGGCACGGG+CGG | 0.533615 | 5.4:+16102552 | None:intergenic |
| CTACCGGAGCTGTTGCGAAA+CGG | 0.536790 | 5.4:-16102276 | MS.gene72691:CDS |
| GCCTCCTGGAGCGATGTCGT+TGG | 0.537048 | 5.4:+16102507 | None:intergenic |
| TAACCGTTTCGCAACAGCTC+CGG | 0.541587 | 5.4:+16102273 | None:intergenic |
| GGTGTTGTCAGTCATGGTGG+CGG | 0.542438 | 5.4:+16102648 | None:intergenic |
| AACAAACCTTTGGCAGTGAT+CGG | 0.545138 | 5.4:-16102157 | MS.gene72691:CDS |
| GTATACGGCGGCGGTGTGGG+CGG | 0.546275 | 5.4:+16102576 | None:intergenic |
| AGTTAGAGCTTGATTCTGAT+GGG | 0.548212 | 5.4:-16101832 | MS.gene72691:CDS |
| AGAGACGGAGGCGCGTTGAG+TGG | 0.548569 | 5.4:+16102684 | None:intergenic |
| TGGGTATGTTGTGACGAAGC+CGG | 0.551891 | 5.4:-16101813 | MS.gene72691:CDS |
| AAAGGTTTGTTACGAAAGAT+CGG | 0.552657 | 5.4:+16102169 | None:intergenic |
| CGTCGGTTGTGGTGGTGAGT+TGG | 0.552760 | 5.4:+16102485 | None:intergenic |
| AAGCCCGAAACGTATCCCTT+CGG | 0.556116 | 5.4:+16102065 | None:intergenic |
| ACACTAGTCTTCGTAGTCCC+CGG | 0.559275 | 5.4:+16101794 | None:intergenic |
| AATTTCCCCGGTTTCCCCGA+CGG | 0.559331 | 5.4:-16102457 | MS.gene72691:CDS |
| ATTAGGACCATCACCGGAGC+CGG | 0.560496 | 5.4:+16102243 | None:intergenic |
| AAGCTCTGCATCATCGGCAG+TGG | 0.560600 | 5.4:-16102604 | MS.gene72691:CDS |
| ACTACGAAGACTAGTGTTGA+GGG | 0.561326 | 5.4:-16101788 | MS.gene72691:CDS |
| GATTCGGTTATCGTCGCTAC+CGG | 0.565517 | 5.4:-16102292 | MS.gene72691:CDS |
| ATGAACTCACCTTCATGTCA+TGG | 0.573351 | 5.4:-16101263 | MS.gene72691:CDS |
| AATCCTCTTCGAAGGATGGA+TGG | 0.574752 | 5.4:-16102530 | MS.gene72691:CDS |
| CTCAAACCAATCCTCTTCGA+AGG | 0.575038 | 5.4:-16102538 | MS.gene72691:CDS |
| GTTGTCAGTCATGGTGGCGG+AGG | 0.576782 | 5.4:+16102651 | None:intergenic |
| GATCTCGGTTCCAAATTTAG+CGG | 0.579270 | 5.4:+16102393 | None:intergenic |
| TTCGCCGCCGAGGATTCCGT+CGG | 0.585796 | 5.4:+16102441 | None:intergenic |
| GGAGAATGTGGTGACAAAAG+AGG | 0.585967 | 5.4:-16101927 | MS.gene72691:CDS |
| CGGTGGTGGAGATTCAGCTA+TGG | 0.589556 | 5.4:-16102137 | MS.gene72691:CDS |
| GACTACGAAGACTAGTGTTG+AGG | 0.594010 | 5.4:-16101789 | MS.gene72691:CDS |
| AAGTTTACATCATTCACCGA+AGG | 0.594491 | 5.4:-16102081 | MS.gene72691:CDS |
| CCATCACCGGAGCCGGTGAA+CGG | 0.597742 | 5.4:+16102250 | None:intergenic |
| GGTGGTGTTGTCAGTCATGG+TGG | 0.598210 | 5.4:+16102645 | None:intergenic |
| GGCACGGGCGGCGTATACGG+CGG | 0.600378 | 5.4:+16102564 | None:intergenic |
| CAATACAGACCATGACATGA+AGG | 0.611476 | 5.4:+16101254 | None:intergenic |
| CCACCACCGATCACTGCCAA+AGG | 0.613847 | 5.4:+16102151 | None:intergenic |
| TGGTGGAGATTCAGCTATGG+AGG | 0.616555 | 5.4:-16102134 | MS.gene72691:CDS |
| TGGGGAGAATAAGAAGCTTG+GGG | 0.617354 | 5.4:-16101960 | MS.gene72691:CDS |
| CTAATGGTTACTGGAACCGT+GGG | 0.623174 | 5.4:-16102225 | MS.gene72691:CDS |
| AGTTTACATCATTCACCGAA+GGG | 0.627428 | 5.4:-16102080 | MS.gene72691:CDS |
| TCAGCTTGTGCTGTATGTGA+CGG | 0.630662 | 5.4:-16102199 | MS.gene72691:CDS |
| GGATTCCGTCGGGGAAACCG+GGG | 0.631914 | 5.4:+16102452 | None:intergenic |
| TGAAAAGAGTGATCCAGTTG+TGG | 0.634727 | 5.4:+16102728 | None:intergenic |
| GGTGATTTGGAATTCAATGG+TGG | 0.638272 | 5.4:-16101999 | MS.gene72691:CDS |
| GTTCCATGAGTTCGCCGCCG+AGG | 0.639562 | 5.4:+16102431 | None:intergenic |
| GGATACGGCGGAAGAGACGG+AGG | 0.641171 | 5.4:+16102672 | None:intergenic |
| TGGCCATCCATCCTTCGAAG+AGG | 0.649138 | 5.4:+16102527 | None:intergenic |
| CATGGTGGCGGAGGATACGG+CGG | 0.656296 | 5.4:+16102660 | None:intergenic |
| AAACCTTTGGCAGTGATCGG+TGG | 0.660900 | 5.4:-16102154 | MS.gene72691:CDS |
| GGATTGGTTTGAGTTCGGCA+CGG | 0.665823 | 5.4:+16102548 | None:intergenic |
| CGCCGCCGAGGATTCCGTCG+GGG | 0.669377 | 5.4:+16102443 | None:intergenic |
| GTAACCATTAGGACCATCAC+CGG | 0.674090 | 5.4:+16102237 | None:intergenic |
| GGTATGTTGTGACGAAGCCG+GGG | 0.674837 | 5.4:-16101811 | MS.gene72691:CDS |
| CAGCACAAGCTGAAATCCCA+CGG | 0.675347 | 5.4:+16102209 | None:intergenic |
| GGGGAGAATAAGAAGCTTGG+GGG | 0.680934 | 5.4:-16101959 | MS.gene72691:CDS |
| ACCGGGGAAATTCTCGACGT+CGG | 0.686945 | 5.4:+16102468 | None:intergenic |
| TTCCCCGACGGAATCCTCGG+CGG | 0.691557 | 5.4:-16102445 | MS.gene72691:CDS |
| GCCAACGACATCGCTCCAGG+AGG | 0.696880 | 5.4:-16102508 | MS.gene72691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATAACCAACAATA+AGG | + | chr5.4:16102617-16102636 | None:intergenic | 15.0% |
| !! | TGGTTATTATTTAAGAGAAT+TGG | - | chr5.4:16102623-16102642 | MS.gene72691:CDS | 20.0% |
| !! | TTTGAGTAATGATAAGATTA+AGG | - | chr5.4:16101973-16101992 | MS.gene72691:CDS | 20.0% |
| !!! | TAGTTCATTATTCATTTTAG+AGG | - | chr5.4:16102477-16102496 | MS.gene72691:CDS | 20.0% |
| ! | ATGATAAGATTAAGGTGATT+TGG | - | chr5.4:16101981-16102000 | MS.gene72691:CDS | 25.0% |
| ! | ATGTTATCTTAAATGTGGTA+GGG | - | chr5.4:16102688-16102707 | MS.gene72691:CDS | 25.0% |
| !!! | ATATAGCTATTTTATAACCC+AGG | + | chr5.4:16102531-16102550 | None:intergenic | 25.0% |
| GATGTTATCTTAAATGTGGT+AGG | - | chr5.4:16102687-16102706 | MS.gene72691:CDS | 30.0% | |
| TGCTTAGTTGTTATATCTGA+TGG | - | chr5.4:16102588-16102607 | MS.gene72691:CDS | 30.0% | |
| TGGAGATGTTATCTTAAATG+TGG | - | chr5.4:16102683-16102702 | MS.gene72691:CDS | 30.0% | |
| ! | AAAAGAGGTTTCTGATTTGA+AGG | - | chr5.4:16102081-16102100 | MS.gene72691:CDS | 30.0% |
| ! | ATAATTACATGTGTTGACAC+CGG | - | chr5.4:16102426-16102445 | MS.gene72691:CDS | 30.0% |
| ! | GCAACGTTTTTGACAAAATA+CGG | - | chr5.4:16101884-16101903 | MS.gene72691:CDS | 30.0% |
| ! | TAAGGTGATTTGGAATTCAA+TGG | - | chr5.4:16101991-16102010 | MS.gene72691:CDS | 30.0% |
| ! | TTTCTGATTTGAAGGTTTCT+GGG | - | chr5.4:16102089-16102108 | MS.gene72691:CDS | 30.0% |
| !! | AAAGGTTTGTTACGAAAGAT+CGG | + | chr5.4:16101827-16101846 | None:intergenic | 30.0% |
| AAAACTAAGCTCTGCATCAT+CGG | - | chr5.4:16101383-16101402 | MS.gene72691:intron | 35.0% | |
| AAGCTTGGTTTAACACTCAA+TGG | + | chr5.4:16102664-16102683 | None:intergenic | 35.0% | |
| AAGTTTACATCATTCACCGA+AGG | - | chr5.4:16101912-16101931 | MS.gene72691:CDS | 35.0% | |
| AGTTAGAGCTTGATTCTGAT+GGG | - | chr5.4:16102161-16102180 | MS.gene72691:CDS | 35.0% | |
| AGTTTACATCATTCACCGAA+GGG | - | chr5.4:16101913-16101932 | MS.gene72691:CDS | 35.0% | |
| ATCAACCTTAGAAACCGTTT+CGG | + | chr5.4:16101630-16101649 | None:intergenic | 35.0% | |
| ATTGAGTGTTAAACCAAGCT+TGG | - | chr5.4:16102663-16102682 | MS.gene72691:CDS | 35.0% | |
| GAATCAGTGAAAACCCTAAA+AGG | + | chr5.4:16101665-16101684 | None:intergenic | 35.0% | |
| GATCTTTCGTAACAAACCTT+TGG | - | chr5.4:16101826-16101845 | MS.gene72691:CDS | 35.0% | |
| TAAGATAACATCTCCAAGCT+TGG | + | chr5.4:16102679-16102698 | None:intergenic | 35.0% | |
| TATTGATGTTGACATGTCAG+TGG | + | chr5.4:16102378-16102397 | None:intergenic | 35.0% | |
| TCTGATGGAATCCTTATTGT+TGG | - | chr5.4:16102603-16102622 | MS.gene72691:CDS | 35.0% | |
| ! | ATTTCTCTTCTCGTCCTTTT+AGG | - | chr5.4:16101648-16101667 | MS.gene72691:intron | 35.0% |
| ! | GTTTCTGATTTGAAGGTTTC+TGG | - | chr5.4:16102088-16102107 | MS.gene72691:CDS | 35.0% |
| ! | TTTCTCTTCTCGTCCTTTTA+GGG | - | chr5.4:16101649-16101668 | MS.gene72691:intron | 35.0% |
| AACAAACCTTTGGCAGTGAT+CGG | - | chr5.4:16101836-16101855 | MS.gene72691:CDS | 40.0% | |
| ACGTACTGTTGAAGCTGATT+CGG | - | chr5.4:16101685-16101704 | MS.gene72691:intron | 40.0% | |
| ATGAACTCACCTTCATGTCA+TGG | - | chr5.4:16102730-16102749 | MS.gene72691:CDS | 40.0% | |
| ATGGGGAGAATAAGAAGCTT+GGG | - | chr5.4:16102032-16102051 | MS.gene72691:CDS | 40.0% | |
| CAATACAGACCATGACATGA+AGG | + | chr5.4:16102742-16102761 | None:intergenic | 40.0% | |
| CAGTTAGAGCTTGATTCTGA+TGG | - | chr5.4:16102160-16102179 | MS.gene72691:CDS | 40.0% | |
| CTGGGTTGTTCTTTGCAATT+GGG | - | chr5.4:16102107-16102126 | MS.gene72691:CDS | 40.0% | |
| GATCTCGGTTCCAAATTTAG+CGG | + | chr5.4:16101603-16101622 | None:intergenic | 40.0% | |
| TCTGGGTTGTTCTTTGCAAT+TGG | - | chr5.4:16102106-16102125 | MS.gene72691:CDS | 40.0% | |
| TGAAAAGAGTGATCCAGTTG+TGG | + | chr5.4:16101268-16101287 | None:intergenic | 40.0% | |
| TGTGTGTGAATGTGATTCCT+GGG | - | chr5.4:16102511-16102530 | MS.gene72691:CDS | 40.0% | |
| TTGGAATTCAATGGTGGTTG+AGG | - | chr5.4:16102000-16102019 | MS.gene72691:CDS | 40.0% | |
| TTGTGTGTGAATGTGATTCC+TGG | - | chr5.4:16102510-16102529 | MS.gene72691:CDS | 40.0% | |
| ! | ACTACGAAGACTAGTGTTGA+GGG | - | chr5.4:16102205-16102224 | MS.gene72691:CDS | 40.0% |
| ! | ATGCCTTCGATTAGAAGTGT+CGG | - | chr5.4:16102451-16102470 | MS.gene72691:CDS | 40.0% |
| ! | GATTTTGTCCAAACCACAAC+TGG | - | chr5.4:16101252-16101271 | MS.gene72691:CDS | 40.0% |
| ! | GGTGATTTGGAATTCAATGG+TGG | - | chr5.4:16101994-16102013 | MS.gene72691:CDS | 40.0% |
| !! | CAAATTTAGCGGACTGTTGA+CGG | + | chr5.4:16101592-16101611 | None:intergenic | 40.0% |
| !! | GAAGAGGATTGGTTTGAGTT+CGG | + | chr5.4:16101453-16101472 | None:intergenic | 40.0% |
| !!! | GATGCAGAGCTTAGTTTTGA+CGG | + | chr5.4:16101381-16101400 | None:intergenic | 40.0% |
| AACCAATCCTCTTCGAAGGA+TGG | - | chr5.4:16101459-16101478 | MS.gene72691:intron | 45.0% | |
| AACCGAGATCTTCACCGAAA+CGG | - | chr5.4:16101613-16101632 | MS.gene72691:intron | 45.0% | |
| AACCGTTTCGGTGAAGATCT+CGG | + | chr5.4:16101618-16101637 | None:intergenic | 45.0% | |
| AATCCTCTTCGAAGGATGGA+TGG | - | chr5.4:16101463-16101482 | MS.gene72691:intron | 45.0% | |
| AGACAAGCTATTACTGCTGC+TGG | - | chr5.4:16102265-16102284 | MS.gene72691:CDS | 45.0% | |
| AGAGTGATCCAGTTGTGGTT+TGG | + | chr5.4:16101263-16101282 | None:intergenic | 45.0% | |
| ATCCATCCTTCGAAGAGGAT+TGG | + | chr5.4:16101464-16101483 | None:intergenic | 45.0% | |
| CCATCCAAAAACTTTGTCGC+CGG | + | chr5.4:16102139-16102158 | None:intergenic | 45.0% | |
| CGTCAACAGTCCGCTAAATT+TGG | - | chr5.4:16101590-16101609 | MS.gene72691:intron | 45.0% | |
| CTAATGGTTACTGGAACCGT+GGG | - | chr5.4:16101768-16101787 | MS.gene72691:CDS | 45.0% | |
| CTCAAACCAATCCTCTTCGA+AGG | - | chr5.4:16101455-16101474 | MS.gene72691:intron | 45.0% | |
| CTTCACCGAAACGGTTTCTA+AGG | - | chr5.4:16101622-16101641 | MS.gene72691:intron | 45.0% | |
| CTTTGCAATTGGGCATGAAC+CGG | - | chr5.4:16102117-16102136 | MS.gene72691:CDS | 45.0% | |
| GACTACGAAGACTAGTGTTG+AGG | - | chr5.4:16102204-16102223 | MS.gene72691:CDS | 45.0% | |
| GATGGGGAGAATAAGAAGCT+TGG | - | chr5.4:16102031-16102050 | MS.gene72691:CDS | 45.0% | |
| GGAGAATGTGGTGACAAAAG+AGG | - | chr5.4:16102066-16102085 | MS.gene72691:CDS | 45.0% | |
| GTAACCATTAGGACCATCAC+CGG | + | chr5.4:16101759-16101778 | None:intergenic | 45.0% | |
| GTGATGGTCCTAATGGTTAC+TGG | - | chr5.4:16101759-16101778 | MS.gene72691:CDS | 45.0% | |
| TAAGAAGCTTGGGGGTTTGA+AGG | - | chr5.4:16102042-16102061 | MS.gene72691:CDS | 45.0% | |
| TCAGCTTGTGCTGTATGTGA+CGG | - | chr5.4:16101794-16101813 | MS.gene72691:CDS | 45.0% | |
| TGATGTTGACATGTCAGTGG+CGG | + | chr5.4:16102375-16102394 | None:intergenic | 45.0% | |
| TGGGGAGAATAAGAAGCTTG+GGG | - | chr5.4:16102033-16102052 | MS.gene72691:CDS | 45.0% | |
| TTCACCGAAGGGATACGTTT+CGG | - | chr5.4:16101924-16101943 | MS.gene72691:CDS | 45.0% | |
| ! | CTTCTAATCGAAGGCATGAC+CGG | + | chr5.4:16102448-16102467 | None:intergenic | 45.0% |
| ! | TCAATGGTGGTTGAGGCTTT+TGG | - | chr5.4:16102007-16102026 | MS.gene72691:CDS | 45.0% |
| ! | TGAACCGGCGACAAAGTTTT+TGG | - | chr5.4:16102132-16102151 | MS.gene72691:CDS | 45.0% |
| !! | TGCCTTCGATTAGAAGTGTC+GGG | - | chr5.4:16102452-16102471 | MS.gene72691:CDS | 45.0% |
| !! | TGGTTGAGGCTTTTGGAGAT+GGG | - | chr5.4:16102014-16102033 | MS.gene72691:CDS | 45.0% |
| !!! | AGAGCTTAGTTTTGACGGTG+GGG | + | chr5.4:16101376-16101395 | None:intergenic | 45.0% |
| !!! | CAGAGCTTAGTTTTGACGGT+GGG | + | chr5.4:16101377-16101396 | None:intergenic | 45.0% |
| !!! | TTGAGGGTGTTTTTGCTGCT+GGG | - | chr5.4:16102221-16102240 | MS.gene72691:CDS | 45.0% |
| AAACCTTTGGCAGTGATCGG+TGG | - | chr5.4:16101839-16101858 | MS.gene72691:CDS | 50.0% | |
| AAGCCCGAAACGTATCCCTT+CGG | + | chr5.4:16101931-16101950 | None:intergenic | 50.0% | |
| CAGCACAAGCTGAAATCCCA+CGG | + | chr5.4:16101787-16101806 | None:intergenic | 50.0% | |
| CCACGGTTCCAGTAACCATT+AGG | + | chr5.4:16101770-16101789 | None:intergenic | 50.0% | |
| CCTAATGGTTACTGGAACCG+TGG | - | chr5.4:16101767-16101786 | MS.gene72691:CDS | 50.0% | |
| GCTATTACTGCTGCTGGATC+TGG | - | chr5.4:16102271-16102290 | MS.gene72691:CDS | 50.0% | |
| GGGGAGAATAAGAAGCTTGG+GGG | - | chr5.4:16102034-16102053 | MS.gene72691:CDS | 50.0% | |
| GGGTTTGAAGGTGGAGAATG+TGG | - | chr5.4:16102054-16102073 | MS.gene72691:CDS | 50.0% | |
| TAACCGTTTCGCAACAGCTC+CGG | + | chr5.4:16101723-16101742 | None:intergenic | 50.0% | |
| TCACCGAAGGGATACGTTTC+GGG | - | chr5.4:16101925-16101944 | MS.gene72691:CDS | 50.0% | |
| TGGGTATGTTGTGACGAAGC+CGG | - | chr5.4:16102180-16102199 | MS.gene72691:CDS | 50.0% | |
| TGGTGGAGATTCAGCTATGG+AGG | - | chr5.4:16101859-16101878 | MS.gene72691:CDS | 50.0% | |
| ! | GAAATTCTCGACGTCGGTTG+TGG | + | chr5.4:16101522-16101541 | None:intergenic | 50.0% |
| ! | GATTCGGTTATCGTCGCTAC+CGG | - | chr5.4:16101701-16101720 | MS.gene72691:intron | 50.0% |
| ! | TTTTGCTGCTGGGGATGTTC+AGG | - | chr5.4:16102231-16102250 | MS.gene72691:CDS | 50.0% |
| !! | ACACTAGTCTTCGTAGTCCC+CGG | + | chr5.4:16102202-16102221 | None:intergenic | 50.0% |
| !! | CCGGCGACAAAGTTTTTGGA+TGG | - | chr5.4:16102136-16102155 | MS.gene72691:CDS | 50.0% |
| !! | GATTGGTTTGAGTTCGGCAC+GGG | + | chr5.4:16101447-16101466 | None:intergenic | 50.0% |
| !! | GCCTTCGATTAGAAGTGTCG+GGG | - | chr5.4:16102453-16102472 | MS.gene72691:CDS | 50.0% |
| !! | GGATTGGTTTGAGTTCGGCA+CGG | + | chr5.4:16101448-16101467 | None:intergenic | 50.0% |
| !! | GGTTGAGGCTTTTGGAGATG+GGG | - | chr5.4:16102015-16102034 | MS.gene72691:CDS | 50.0% |
| !! | GTGGTTGAGGCTTTTGGAGA+TGG | - | chr5.4:16102013-16102032 | MS.gene72691:CDS | 50.0% |
| !!! | CTTAGTTTTGACGGTGGGGA+GGG | + | chr5.4:16101372-16101391 | None:intergenic | 50.0% |
| !!! | GCAGAGCTTAGTTTTGACGG+TGG | + | chr5.4:16101378-16101397 | None:intergenic | 50.0% |
| !!! | GTTGAGGGTGTTTTTGCTGC+TGG | - | chr5.4:16102220-16102239 | MS.gene72691:CDS | 50.0% |
| !!! | TGAGGGTGTTTTTGCTGCTG+GGG | - | chr5.4:16102222-16102241 | MS.gene72691:CDS | 50.0% |
| AAGCTCTGCATCATCGGCAG+TGG | - | chr5.4:16101389-16101408 | MS.gene72691:intron | 55.0% | |
| AATTTCCCCGGTTTCCCCGA+CGG | - | chr5.4:16101536-16101555 | MS.gene72691:intron | 55.0% | |
| ACCGACGTCGAGAATTTCCC+CGG | - | chr5.4:16101524-16101543 | MS.gene72691:intron | 55.0% | |
| ACCGGGGAAATTCTCGACGT+CGG | + | chr5.4:16101528-16101547 | None:intergenic | 55.0% | |
| AGGCGCGTTGAGTGGAGATT+AGG | + | chr5.4:16101304-16101323 | None:intergenic | 55.0% | |
| ATTAGGACCATCACCGGAGC+CGG | + | chr5.4:16101753-16101772 | None:intergenic | 55.0% | |
| CTACCGGAGCTGTTGCGAAA+CGG | - | chr5.4:16101717-16101736 | MS.gene72691:intron | 55.0% | |
| GAAGCTTGGGGGTTTGAAGG+TGG | - | chr5.4:16102045-16102064 | MS.gene72691:CDS | 55.0% | |
| GCCCCGACACTTCTAATCGA+AGG | + | chr5.4:16102457-16102476 | None:intergenic | 55.0% | |
| GCGAAACGGTTACCGTTCAC+CGG | - | chr5.4:16101731-16101750 | MS.gene72691:CDS | 55.0% | |
| GGGTATGTTGTGACGAAGCC+GGG | - | chr5.4:16102181-16102200 | MS.gene72691:CDS | 55.0% | |
| GGTATGTTGTGACGAAGCCG+GGG | - | chr5.4:16102182-16102201 | MS.gene72691:CDS | 55.0% | |
| TGGCCATCCATCCTTCGAAG+AGG | + | chr5.4:16101469-16101488 | None:intergenic | 55.0% | |
| ! | ATTCTCGACGTCGGTTGTGG+TGG | + | chr5.4:16101519-16101538 | None:intergenic | 55.0% |
| ! | GGTGTTGTCAGTCATGGTGG+CGG | + | chr5.4:16101348-16101367 | None:intergenic | 55.0% |
| !! | AGTCATGGTGGCGGAGGATA+CGG | + | chr5.4:16101339-16101358 | None:intergenic | 55.0% |
| !! | CGGTGGTGGAGATTCAGCTA+TGG | - | chr5.4:16101856-16101875 | MS.gene72691:CDS | 55.0% |
| !! | GAGGGTGGTGTTGTCAGTCA+TGG | + | chr5.4:16101354-16101373 | None:intergenic | 55.0% |
| !! | GGTGGTGTTGTCAGTCATGG+TGG | + | chr5.4:16101351-16101370 | None:intergenic | 55.0% |
| !!! | GCTTAGTTTTGACGGTGGGG+AGG | + | chr5.4:16101373-16101392 | None:intergenic | 55.0% |
| AATCCTCGGCGGCGAACTCA+TGG | - | chr5.4:16101559-16101578 | MS.gene72691:intron | 60.0% | |
| AGGATTCCGTCGGGGAAACC+GGG | + | chr5.4:16101545-16101564 | None:intergenic | 60.0% | |
| ATGGCCAACGACATCGCTCC+AGG | - | chr5.4:16101482-16101501 | MS.gene72691:intron | 60.0% | |
| CCACCACCGATCACTGCCAA+AGG | + | chr5.4:16101845-16101864 | None:intergenic | 60.0% | |
| CCTTTGGCAGTGATCGGTGG+TGG | - | chr5.4:16101842-16101861 | MS.gene72691:CDS | 60.0% | |
| GAGGATTCCGTCGGGGAAAC+CGG | + | chr5.4:16101546-16101565 | None:intergenic | 60.0% | |
| GGAGGATACGGCGGAAGAGA+CGG | + | chr5.4:16101327-16101346 | None:intergenic | 60.0% | |
| GGTTTCCCCGACGGAATCCT+CGG | - | chr5.4:16101545-16101564 | MS.gene72691:intron | 60.0% | |
| ! | CGTCGGTTGTGGTGGTGAGT+TGG | + | chr5.4:16101511-16101530 | None:intergenic | 60.0% |
| ! | GGCTCCGGTGATGGTCCTAA+TGG | - | chr5.4:16101752-16101771 | MS.gene72691:CDS | 60.0% |
| ! | TGGTTTGAGTTCGGCACGGG+CGG | + | chr5.4:16101444-16101463 | None:intergenic | 60.0% |
| !! | AGTTTTGACGGTGGGGAGGG+TGG | + | chr5.4:16101369-16101388 | None:intergenic | 60.0% |
| !! | GTTGTCAGTCATGGTGGCGG+AGG | + | chr5.4:16101345-16101364 | None:intergenic | 60.0% |
| CCATCACCGGAGCCGGTGAA+CGG | + | chr5.4:16101746-16101765 | None:intergenic | 65.0% | |
| GCCAACGACATCGCTCCAGG+AGG | - | chr5.4:16101485-16101504 | MS.gene72691:intron | 65.0% | |
| GCCTCCTGGAGCGATGTCGT+TGG | + | chr5.4:16101489-16101508 | None:intergenic | 65.0% | |
| GGATACGGCGGAAGAGACGG+AGG | + | chr5.4:16101324-16101343 | None:intergenic | 65.0% | |
| GGATTCCGTCGGGGAAACCG+GGG | + | chr5.4:16101544-16101563 | None:intergenic | 65.0% | |
| GTTCCATGAGTTCGCCGCCG+AGG | + | chr5.4:16101565-16101584 | None:intergenic | 65.0% | |
| TTCCCCGACGGAATCCTCGG+CGG | - | chr5.4:16101548-16101567 | MS.gene72691:intron | 65.0% | |
| TTCGCCGCCGAGGATTCCGT+CGG | + | chr5.4:16101555-16101574 | None:intergenic | 65.0% | |
| TTCGGCACGGGCGGCGTATA+CGG | + | chr5.4:16101435-16101454 | None:intergenic | 65.0% | |
| ! | AGAGACGGAGGCGCGTTGAG+TGG | + | chr5.4:16101312-16101331 | None:intergenic | 65.0% |
| ! | GTGGTGGTGAGTTGGCCTCC+TGG | + | chr5.4:16101503-16101522 | None:intergenic | 65.0% |
| !! | CATGGTGGCGGAGGATACGG+CGG | + | chr5.4:16101336-16101355 | None:intergenic | 65.0% |
| !! | CGGTTACCGTTCACCGGCTC+CGG | - | chr5.4:16101737-16101756 | MS.gene72691:CDS | 65.0% |
| GGCGTATACGGCGGCGGTGT+GGG | + | chr5.4:16101423-16101442 | None:intergenic | 70.0% | |
| GTATACGGCGGCGGTGTGGG+CGG | + | chr5.4:16101420-16101439 | None:intergenic | 70.0% | |
| TCGCCGCCGAGGATTCCGTC+GGG | + | chr5.4:16101554-16101573 | None:intergenic | 70.0% | |
| !! | CCGTTCACCGGCTCCGGTGA+TGG | - | chr5.4:16101743-16101762 | MS.gene72691:CDS | 70.0% |
| ACGGGCGGCGTATACGGCGG+CGG | + | chr5.4:16101429-16101448 | None:intergenic | 75.0% | |
| CGCCGCCGAGGATTCCGTCG+GGG | + | chr5.4:16101553-16101572 | None:intergenic | 75.0% | |
| CGGCGTATACGGCGGCGGTG+TGG | + | chr5.4:16101424-16101443 | None:intergenic | 75.0% | |
| GGCACGGGCGGCGTATACGG+CGG | + | chr5.4:16101432-16101451 | None:intergenic | 75.0% | |
| ! | TACGGCGGCGGTGTGGGCGG+CGG | + | chr5.4:16101417-16101436 | None:intergenic | 80.0% |
| ! | ACGGCGGCGGTGTGGGCGGC+GGG | + | chr5.4:16101416-16101435 | None:intergenic | 85.0% |
| ! | CGGCGGCGGTGTGGGCGGCG+GGG | + | chr5.4:16101415-16101434 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 16101242 | 16102773 | 16101242 | ID=MS.gene72691 |
| chr5.4 | mRNA | 16101242 | 16102773 | 16101242 | ID=MS.gene72691.t1;Parent=MS.gene72691 |
| chr5.4 | exon | 16101723 | 16102773 | 16101723 | ID=MS.gene72691.t1.exon1;Parent=MS.gene72691.t1 |
| chr5.4 | CDS | 16101723 | 16102773 | 16101723 | ID=cds.MS.gene72691.t1;Parent=MS.gene72691.t1 |
| chr5.4 | exon | 16101242 | 16101306 | 16101242 | ID=MS.gene72691.t1.exon2;Parent=MS.gene72691.t1 |
| chr5.4 | CDS | 16101242 | 16101306 | 16101242 | ID=cds.MS.gene72691.t1;Parent=MS.gene72691.t1 |
| Gene Sequence |
| Protein sequence |
