Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65554.t1 | XP_013451659.1 | 99.6 | 498 | 2 | 0 | 1 | 498 | 1 | 498 | 4.40E-287 | 996.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65554.t1 | Q43621 | 90.8 | 498 | 46 | 0 | 1 | 498 | 1 | 498 | 1.8e-265 | 916.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65554.t1 | I3TAS1 | 99.6 | 498 | 2 | 0 | 1 | 498 | 1 | 498 | 3.2e-287 | 996.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049861 | MS.gene65554 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene65554 | 0.802065 | 6.69E-49 | -1.69E-46 |
| MS.gene050320 | MS.gene65554 | 0.81843 | 1.97E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene65554 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene65554 | 0.807098 | 5.97E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene65554 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene65554 | 0.805858 | 1.09E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene65554 | 0.812096 | 5.03E-51 | -1.69E-46 |
| MS.gene051987 | MS.gene65554 | 0.810757 | 9.84E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene65554 | -0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene65554 | 0.845749 | 3.34E-59 | -1.69E-46 |
| MS.gene05344 | MS.gene65554 | -0.813566 | 2.40E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene65554 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene65554 | 0.817614 | 3.01E-52 | -1.69E-46 |
| MS.gene056849 | MS.gene65554 | 0.836344 | 9.89E-57 | -1.69E-46 |
| MS.gene056975 | MS.gene65554 | 0.839099 | 1.94E-57 | -1.69E-46 |
| MS.gene056992 | MS.gene65554 | 0.847048 | 1.48E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene65554 | 0.806304 | 8.78E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene65554 | 0.828362 | 9.38E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene65554 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene65554 | 0.857482 | 1.58E-62 | -1.69E-46 |
| MS.gene058054 | MS.gene65554 | 0.836349 | 9.86E-57 | -1.69E-46 |
| MS.gene058055 | MS.gene65554 | 0.837293 | 5.66E-57 | -1.69E-46 |
| MS.gene058074 | MS.gene65554 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene65554 | 0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene65554 | 0.809291 | 2.04E-50 | -1.69E-46 |
| MS.gene06118 | MS.gene65554 | 0.800826 | 1.20E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68603 | MS.gene65554 | PPI |
| MS.gene65554 | MS.gene56014 | PPI |
| MS.gene70673 | MS.gene65554 | PPI |
| MS.gene88347 | MS.gene65554 | PPI |
| MS.gene65554 | MS.gene48333 | PPI |
| MS.gene65292 | MS.gene65554 | PPI |
| MS.gene022347 | MS.gene65554 | PPI |
| MS.gene82505 | MS.gene65554 | PPI |
| MS.gene26810 | MS.gene65554 | PPI |
| MS.gene39910 | MS.gene65554 | PPI |
| MS.gene058213 | MS.gene65554 | PPI |
| MS.gene56912 | MS.gene65554 | PPI |
| MS.gene033288 | MS.gene65554 | PPI |
| MS.gene24749 | MS.gene65554 | PPI |
| MS.gene061224 | MS.gene65554 | PPI |
| MS.gene65554 | MS.gene86513 | PPI |
| MS.gene011327 | MS.gene65554 | PPI |
| MS.gene72691 | MS.gene65554 | PPI |
| MS.gene65554 | MS.gene036155 | PPI |
| MS.gene50577 | MS.gene65554 | PPI |
| MS.gene49348 | MS.gene65554 | PPI |
| MS.gene030130 | MS.gene65554 | PPI |
| MS.gene042299 | MS.gene65554 | PPI |
| MS.gene00186 | MS.gene65554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65554.t1 | MTR_6g033515 | 99.598 | 498 | 2 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1020 |
| MS.gene65554.t1 | MTR_6g033515 | 97.255 | 510 | 2 | 1 | 1 | 498 | 1 | 510 | 0.0 | 1011 |
| MS.gene65554.t1 | MTR_1g070505 | 52.830 | 477 | 218 | 5 | 16 | 491 | 66 | 536 | 4.26e-173 | 499 |
| MS.gene65554.t1 | MTR_4g123070 | 30.787 | 445 | 281 | 9 | 48 | 476 | 53 | 486 | 2.68e-58 | 201 |
| MS.gene65554.t1 | MTR_2g034580 | 28.838 | 482 | 296 | 13 | 22 | 476 | 82 | 543 | 2.74e-41 | 156 |
| MS.gene65554.t1 | MTR_2g034580 | 28.838 | 482 | 296 | 13 | 22 | 476 | 82 | 543 | 8.56e-41 | 155 |
| MS.gene65554.t1 | MTR_0644s0030 | 30.890 | 382 | 245 | 9 | 16 | 392 | 296 | 663 | 3.77e-39 | 152 |
| MS.gene65554.t1 | MTR_4g121880 | 28.986 | 483 | 294 | 14 | 22 | 476 | 79 | 540 | 7.44e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65554.t1 | AT3G24170 | 78.758 | 499 | 105 | 1 | 1 | 498 | 1 | 499 | 0.0 | 832 |
| MS.gene65554.t1 | AT3G24170 | 78.758 | 499 | 105 | 1 | 1 | 498 | 1 | 499 | 0.0 | 832 |
| MS.gene65554.t1 | AT3G24170 | 78.758 | 499 | 105 | 1 | 1 | 498 | 1 | 499 | 0.0 | 832 |
| MS.gene65554.t1 | AT3G54660 | 53.053 | 475 | 216 | 4 | 14 | 487 | 77 | 545 | 1.63e-176 | 508 |
| MS.gene65554.t1 | AT1G48030 | 30.822 | 438 | 290 | 9 | 48 | 476 | 58 | 491 | 1.24e-54 | 191 |
| MS.gene65554.t1 | AT1G48030 | 30.822 | 438 | 290 | 9 | 48 | 476 | 58 | 491 | 1.24e-54 | 191 |
| MS.gene65554.t1 | AT1G48030 | 30.822 | 438 | 290 | 9 | 48 | 476 | 58 | 491 | 1.24e-54 | 191 |
| MS.gene65554.t1 | AT1G48030 | 30.822 | 438 | 290 | 9 | 48 | 476 | 58 | 491 | 1.24e-54 | 191 |
| MS.gene65554.t1 | AT1G48030 | 30.822 | 438 | 290 | 9 | 48 | 476 | 58 | 491 | 1.24e-54 | 191 |
| MS.gene65554.t1 | AT3G17240 | 30.543 | 442 | 286 | 9 | 48 | 476 | 58 | 491 | 9.11e-54 | 189 |
| MS.gene65554.t1 | AT3G17240 | 30.543 | 442 | 286 | 9 | 48 | 476 | 58 | 491 | 9.11e-54 | 189 |
| MS.gene65554.t1 | AT3G16950 | 29.297 | 512 | 302 | 16 | 22 | 497 | 84 | 571 | 5.08e-38 | 147 |
| MS.gene65554.t1 | AT3G16950 | 29.193 | 483 | 292 | 14 | 22 | 476 | 84 | 544 | 1.10e-37 | 145 |
| MS.gene65554.t1 | AT4G16155 | 27.349 | 479 | 305 | 13 | 22 | 476 | 82 | 541 | 4.53e-34 | 135 |
Find 132 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTGACTTGTTTATTAT+TGG | 0.132102 | 6.4:-5632063 | MS.gene65554:CDS |
| ACTTTGACTTGTTTATTATT+GGG | 0.203664 | 6.4:-5632062 | MS.gene65554:CDS |
| TGATAGGATGCTAGAAATTT+TGG | 0.205462 | 6.4:-5629975 | MS.gene65554:intron |
| CAAACCTGGCCAGGAATATT+TGG | 0.211690 | 6.4:+5628038 | None:intergenic |
| AAATTTAACCTCTTAGAATT+AGG | 0.230809 | 6.4:+5624809 | None:intergenic |
| GATGAAATTAACAGATTAAA+TGG | 0.233774 | 6.4:-5628221 | MS.gene65554:CDS |
| GCAAACAAACGGCGATTTAT+TGG | 0.239901 | 6.4:-5622838 | MS.gene65554:CDS |
| AATAGTACCTGAACAATTTC+AGG | 0.254273 | 6.4:+5621665 | None:intergenic |
| CAAAATATGCTTTGCCGAAT+AGG | 0.271504 | 6.4:+5628088 | None:intergenic |
| TATATGCAGAACACAGTATT+TGG | 0.297384 | 6.4:-5623115 | MS.gene65554:intron |
| CCTAAACGTGTTGTGATTCT+TGG | 0.305529 | 6.4:-5626318 | MS.gene65554:CDS |
| TTGGTCTATGGAGCATCTTA+TGG | 0.308485 | 6.4:-5631567 | MS.gene65554:CDS |
| TGGTCTATGGAGCATCTTAT+GGG | 0.314587 | 6.4:-5631566 | MS.gene65554:CDS |
| TCTGCACCTTTGTTCAAATC+AGG | 0.328073 | 6.4:+5632102 | None:intergenic |
| AAACACAGAAGCCAGATTAT+AGG | 0.330345 | 6.4:-5623087 | MS.gene65554:CDS |
| CAGTTGAGTTTGCATCTATA+TGG | 0.333704 | 6.4:-5626198 | MS.gene65554:CDS |
| AATTAATTCCCCTGCCTTCA+AGG | 0.347785 | 6.4:+5625585 | None:intergenic |
| CCAAGAATCACAACACGTTT+AGG | 0.350302 | 6.4:+5626318 | None:intergenic |
| TCTTACCCCGGTGGCCTTGA+TGG | 0.374242 | 6.4:-5623277 | MS.gene65554:CDS |
| GCTCAGACAGATAAAGTTCT+TGG | 0.374279 | 6.4:-5621713 | MS.gene65554:CDS |
| AACACAGAAGCCAGATTATA+GGG | 0.379325 | 6.4:-5623086 | MS.gene65554:CDS |
| TCAGTGACAAGGCGTGTTAC+CGG | 0.395787 | 6.4:-5619568 | MS.gene65554:CDS |
| GTGAGAATATTGACTTCAAT+TGG | 0.403072 | 6.4:-5629941 | MS.gene65554:CDS |
| TTTATTATTGGGGCTGGAAG+TGG | 0.403148 | 6.4:-5632051 | MS.gene65554:CDS |
| TGTGTTTACAAATTCGTCTT+GGG | 0.405610 | 6.4:+5619535 | None:intergenic |
| GCACCAACATCCCAAGCATA+TGG | 0.406887 | 6.4:-5623329 | MS.gene65554:CDS |
| ATATTCCATACGCAGTGTTC+AGG | 0.409922 | 6.4:-5623063 | MS.gene65554:intron |
| CGATGCACCTGAAATTGTTC+AGG | 0.411857 | 6.4:-5621672 | MS.gene65554:intron |
| TGGTACTAAATTGTCCTATT+CGG | 0.417841 | 6.4:-5628102 | MS.gene65554:CDS |
| TGATGAGGCTCTAAGTTTAG+AGG | 0.418556 | 6.4:-5626346 | MS.gene65554:CDS |
| GCTCAACGTCCAAATATTCC+TGG | 0.419464 | 6.4:-5628047 | MS.gene65554:CDS |
| ATTCCACCACTTTCAGTAGT+TGG | 0.422213 | 6.4:-5622885 | MS.gene65554:CDS |
| CTTTGACTTGTTTATTATTG+GGG | 0.447524 | 6.4:-5632061 | MS.gene65554:CDS |
| TATGGAATATCCCTATAATC+TGG | 0.448617 | 6.4:+5623076 | None:intergenic |
| AAGCGGTTGTTATCCAATGC+TGG | 0.450658 | 6.4:-5628191 | MS.gene65554:CDS |
| CGTCTTGGGCTTCGCACTAC+CGG | 0.451109 | 6.4:+5619549 | None:intergenic |
| CCAATCGTTTCTGAGCTAAT+CGG | 0.458626 | 6.4:+5631730 | None:intergenic |
| TGCATCTATATGGCGCGGGA+TGG | 0.460255 | 6.4:-5626188 | MS.gene65554:CDS |
| ATGTGTTTACAAATTCGTCT+TGG | 0.463351 | 6.4:+5619534 | None:intergenic |
| ACGTCCAAATATTCCTGGCC+AGG | 0.467131 | 6.4:-5628042 | MS.gene65554:intron |
| GCTGGGGTTAAACTATTTGA+AGG | 0.468149 | 6.4:-5628173 | MS.gene65554:CDS |
| AAATAGTTTAACCCCAGCAT+TGG | 0.469001 | 6.4:+5628178 | None:intergenic |
| CTATACCTGAACACTGCGTA+TGG | 0.472477 | 6.4:+5623058 | None:intergenic |
| GCATCTATATGGCGCGGGAT+GGG | 0.473469 | 6.4:-5626187 | MS.gene65554:CDS |
| ATTATTGGGGCTGGAAGTGG+TGG | 0.473961 | 6.4:-5632048 | MS.gene65554:CDS |
| AGCCCATATGCTTGGGATGT+TGG | 0.474739 | 6.4:+5623326 | None:intergenic |
| GACGCTTCCATCAAGGCCAC+CGG | 0.478307 | 6.4:+5623270 | None:intergenic |
| TCACCCACAGCCCATATGCT+TGG | 0.479565 | 6.4:+5623318 | None:intergenic |
| TGAACAATTTCAGGTGCATC+GGG | 0.483749 | 6.4:+5621674 | None:intergenic |
| AGCGGTTGTTATCCAATGCT+GGG | 0.485898 | 6.4:-5628190 | MS.gene65554:CDS |
| CACCCACAGCCCATATGCTT+GGG | 0.486272 | 6.4:+5623319 | None:intergenic |
| TCTGAGCTAATCGGATGAAA+AGG | 0.487124 | 6.4:+5631739 | None:intergenic |
| GACTTGTTTATTATTGGGGC+TGG | 0.489300 | 6.4:-5632057 | MS.gene65554:CDS |
| ACCTGTGTCAAATTTGTCCT+TGG | 0.492284 | 6.4:+5625557 | None:intergenic |
| TTGAACAAAGGTGCAGAAGA+AGG | 0.495116 | 6.4:-5632096 | MS.gene65554:CDS |
| TTTCAAAGGTGTGTCATTCG+TGG | 0.497091 | 6.4:-5631609 | MS.gene65554:intron |
| GCTAGATTCTCATCTAATCA+TGG | 0.501677 | 6.4:-5632015 | MS.gene65554:CDS |
| CCACCGGGGTAAGATTCATT+CGG | 0.502568 | 6.4:+5623286 | None:intergenic |
| TGATAAGACAGGAGCAATAG+TGG | 0.502695 | 6.4:-5624765 | MS.gene65554:intron |
| TGCAAGAAACCTTGAAGGCA+GGG | 0.503594 | 6.4:-5625594 | MS.gene65554:CDS |
| GTAGTTGCAAGAAACCTTGA+AGG | 0.510124 | 6.4:-5625599 | MS.gene65554:CDS |
| CACCAACATCCCAAGCATAT+GGG | 0.511222 | 6.4:-5623328 | MS.gene65554:CDS |
| CATCCCAAGCATATGGGCTG+TGG | 0.512330 | 6.4:-5623322 | MS.gene65554:CDS |
| ACAAGAAAACAAACCTGGCC+AGG | 0.514533 | 6.4:+5628029 | None:intergenic |
| CTCATCTAATCATGGAGCTA+AGG | 0.514793 | 6.4:-5632007 | MS.gene65554:intron |
| CTGAACAATTTCAGGTGCAT+CGG | 0.517509 | 6.4:+5621673 | None:intergenic |
| TTGCAAGAAACCTTGAAGGC+AGG | 0.517629 | 6.4:-5625595 | MS.gene65554:CDS |
| ACGCTTCCATCAAGGCCACC+GGG | 0.517872 | 6.4:+5623271 | None:intergenic |
| AAACGTGTTGTGATTCTTGG+TGG | 0.520608 | 6.4:-5626315 | MS.gene65554:CDS |
| GGCGTAGAGGTTGATAAGAC+AGG | 0.522960 | 6.4:-5624776 | MS.gene65554:CDS |
| GGGGAATTAATTTGCATCCA+AGG | 0.528009 | 6.4:-5625574 | MS.gene65554:CDS |
| GGTCTATGGAGCATCTTATG+GGG | 0.528009 | 6.4:-5631565 | MS.gene65554:CDS |
| ATTTCAAAGCCACACCTCAA+TGG | 0.533543 | 6.4:+5626130 | None:intergenic |
| AGTTGGTCTAAGTGAGGAGG+AGG | 0.534996 | 6.4:-5622868 | MS.gene65554:CDS |
| CGGGGTAAGATTCATTCGGT+TGG | 0.544946 | 6.4:+5623290 | None:intergenic |
| CCGATTAGCTCAGAAACGAT+TGG | 0.549146 | 6.4:-5631730 | MS.gene65554:CDS |
| CTTAGACCAACTACTGAAAG+TGG | 0.550462 | 6.4:+5622879 | None:intergenic |
| GTTAAACTATTTGAAGGTGA+GGG | 0.554309 | 6.4:-5628167 | MS.gene65554:CDS |
| TTCTTGGAGCATCTATGTGT+GGG | 0.554752 | 6.4:-5621697 | MS.gene65554:CDS |
| TCTGAAAACGAGATTGACAT+TGG | 0.554886 | 6.4:+5626162 | None:intergenic |
| GATGGCTAGAAAGATGCTTA+AGG | 0.555131 | 6.4:-5632133 | MS.gene65554:CDS |
| ACAAATTCTTCTGCAGCCGA+TGG | 0.561656 | 6.4:+5619601 | None:intergenic |
| GAAGGTGAGGGTAAGATAGC+GGG | 0.562962 | 6.4:-5628155 | MS.gene65554:CDS |
| TAGTTGGTCAAAACAGAGGA+TGG | 0.573245 | 6.4:-5625431 | MS.gene65554:CDS |
| GAAGGGCTCCTAATTCTAAG+AGG | 0.574025 | 6.4:-5624817 | MS.gene65554:CDS |
| GTTCTTGGAGCATCTATGTG+TGG | 0.574988 | 6.4:-5621698 | MS.gene65554:CDS |
| GAAGAAGCTCTTGCAAAAGA+AGG | 0.576475 | 6.4:-5629919 | MS.gene65554:intron |
| GTCTATGGAGCATCTTATGG+GGG | 0.576831 | 6.4:-5631564 | MS.gene65554:CDS |
| CGTGTTGTGATTCTTGGTGG+AGG | 0.578229 | 6.4:-5626312 | MS.gene65554:CDS |
| GATGTTGTGCTATTTGCCAC+TGG | 0.578774 | 6.4:-5625368 | MS.gene65554:intron |
| ATCCCAAGCATATGGGCTGT+GGG | 0.579689 | 6.4:-5623321 | MS.gene65554:CDS |
| GGTTAAACTATTTGAAGGTG+AGG | 0.581246 | 6.4:-5628168 | MS.gene65554:CDS |
| ATGCAGAACACAGTATTTGG+TGG | 0.584173 | 6.4:-5623112 | MS.gene65554:intron |
| TGAACAAAGGTGCAGAAGAA+GGG | 0.584787 | 6.4:-5632095 | MS.gene65554:CDS |
| TCAGAAAGGAACTTCCATTG+AGG | 0.585951 | 6.4:-5626144 | MS.gene65554:intron |
| ACGCCTTGTCACTGAGCGCA+TGG | 0.587436 | 6.4:+5619576 | None:intergenic |
| AGTTTGCATCTATATGGCGC+GGG | 0.587881 | 6.4:-5626192 | MS.gene65554:CDS |
| TGACCATGCGCTCAGTGACA+AGG | 0.588484 | 6.4:-5619579 | MS.gene65554:CDS |
| TGCAGAACACAGTATTTGGT+GGG | 0.592588 | 6.4:-5623111 | MS.gene65554:intron |
| TAAAGCACAGTTTGATAGCA+CGG | 0.594753 | 6.4:-5620296 | MS.gene65554:intron |
| TTTGATTGCAACTGGCAGCA+GGG | 0.595631 | 6.4:-5628069 | MS.gene65554:CDS |
| CTTCTAGTTGGTCAAAACAG+AGG | 0.596121 | 6.4:-5625435 | MS.gene65554:intron |
| ATTAAAGTTACTACAGATCA+CGG | 0.596617 | 6.4:-5625407 | MS.gene65554:CDS |
| AGCGGGTCCACATGAAGTTG+AGG | 0.599121 | 6.4:-5628138 | MS.gene65554:CDS |
| GAGGCAATAGAGCAAACAAA+CGG | 0.599903 | 6.4:-5622849 | MS.gene65554:CDS |
| GCAAGAAACCTTGAAGGCAG+GGG | 0.599907 | 6.4:-5625593 | MS.gene65554:CDS |
| TGTGTCACCTCAACTTCATG+TGG | 0.600483 | 6.4:+5628131 | None:intergenic |
| GAGTTTGCATCTATATGGCG+CGG | 0.600824 | 6.4:-5626193 | MS.gene65554:CDS |
| TTCAGTAGTTGGTCTAAGTG+AGG | 0.600847 | 6.4:-5622874 | MS.gene65554:CDS |
| AAAGTGTGACGCTTCCATCA+AGG | 0.603206 | 6.4:+5623263 | None:intergenic |
| TCAGAAACGATTGGAGGAGT+CGG | 0.606991 | 6.4:-5631721 | MS.gene65554:CDS |
| GAAACGATTGGAGGAGTCGG+TGG | 0.611745 | 6.4:-5631718 | MS.gene65554:CDS |
| AGTAGTTGGTCTAAGTGAGG+AGG | 0.616299 | 6.4:-5622871 | MS.gene65554:CDS |
| CAACCGAATGAATCTTACCC+CGG | 0.621840 | 6.4:-5623289 | MS.gene65554:CDS |
| ATTAGCTCAGAAACGATTGG+AGG | 0.635464 | 6.4:-5631727 | MS.gene65554:CDS |
| GATTAAATGGAATTTACAAG+CGG | 0.641435 | 6.4:-5628208 | MS.gene65554:CDS |
| GTTGGGTATAACATCTGATG+AGG | 0.641780 | 6.4:-5626361 | MS.gene65554:CDS |
| GCGGTTGTTATCCAATGCTG+GGG | 0.642376 | 6.4:-5628189 | MS.gene65554:CDS |
| TGAAGTTGAGGTGACACAGT+TGG | 0.642411 | 6.4:-5628126 | MS.gene65554:CDS |
| GGTGAACCTGATTTGAACAA+AGG | 0.648232 | 6.4:-5632108 | MS.gene65554:CDS |
| GTGTTGTGATTCTTGGTGGA+GGG | 0.649427 | 6.4:-5626311 | MS.gene65554:intron |
| ATTGCTATTGCATTGAAGTG+TGG | 0.651076 | 6.4:-5620325 | MS.gene65554:CDS |
| TCACGGTGAGGAGTTGATTG+CGG | 0.658352 | 6.4:-5625390 | MS.gene65554:CDS |
| GTAGGTGGGAATACATCCAT+CGG | 0.660503 | 6.4:-5619617 | MS.gene65554:intron |
| TGAAGGTGAGGGTAAGATAG+CGG | 0.661127 | 6.4:-5628156 | MS.gene65554:CDS |
| TCCAAGGACAAATTTGACAC+AGG | 0.672447 | 6.4:-5625558 | MS.gene65554:intron |
| GCTAGAAAGATGCTTAAGGA+CGG | 0.674786 | 6.4:-5632129 | MS.gene65554:CDS |
| GTTGAGGTGACACAGTTGGA+TGG | 0.675416 | 6.4:-5628122 | MS.gene65554:CDS |
| AGACCAACTACTGAAAGTGG+TGG | 0.682450 | 6.4:+5622882 | None:intergenic |
| CGCTTCCATCAAGGCCACCG+GGG | 0.707640 | 6.4:+5623272 | None:intergenic |
| CCGAATGAATCTTACCCCGG+TGG | 0.721442 | 6.4:-5623286 | MS.gene65554:CDS |
| AGTTACTACAGATCACGGTG+AGG | 0.773233 | 6.4:-5625402 | MS.gene65554:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 5619540 | 5632154 | 5619540 | ID=MS.gene65554 |
| chr6.4 | mRNA | 5619540 | 5632154 | 5619540 | ID=MS.gene65554.t1;Parent=MS.gene65554 |
| chr6.4 | exon | 5632008 | 5632154 | 5632008 | ID=MS.gene65554.t1.exon1;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5632008 | 5632154 | 5632008 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5631715 | 5631779 | 5631715 | ID=MS.gene65554.t1.exon2;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5631715 | 5631779 | 5631715 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5631554 | 5631623 | 5631554 | ID=MS.gene65554.t1.exon3;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5631554 | 5631623 | 5631554 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5629920 | 5629991 | 5629920 | ID=MS.gene65554.t1.exon4;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5629920 | 5629991 | 5629920 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5628043 | 5628246 | 5628043 | ID=MS.gene65554.t1.exon5;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5628043 | 5628246 | 5628043 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5626312 | 5626385 | 5626312 | ID=MS.gene65554.t1.exon6;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5626312 | 5626385 | 5626312 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5626145 | 5626228 | 5626145 | ID=MS.gene65554.t1.exon7;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5626145 | 5626228 | 5626145 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5625559 | 5625646 | 5625559 | ID=MS.gene65554.t1.exon8;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5625559 | 5625646 | 5625559 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5625369 | 5625450 | 5625369 | ID=MS.gene65554.t1.exon9;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5625369 | 5625450 | 5625369 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5624766 | 5624839 | 5624766 | ID=MS.gene65554.t1.exon10;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5624766 | 5624839 | 5624766 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5623260 | 5623367 | 5623260 | ID=MS.gene65554.t1.exon11;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5623260 | 5623367 | 5623260 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5623064 | 5623128 | 5623064 | ID=MS.gene65554.t1.exon12;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5623064 | 5623128 | 5623064 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5622795 | 5622908 | 5622795 | ID=MS.gene65554.t1.exon13;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5622795 | 5622908 | 5622795 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5621673 | 5621772 | 5621673 | ID=MS.gene65554.t1.exon14;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5621673 | 5621772 | 5621673 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5620297 | 5620350 | 5620297 | ID=MS.gene65554.t1.exon15;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5620297 | 5620350 | 5620297 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| chr6.4 | exon | 5619540 | 5619635 | 5619540 | ID=MS.gene65554.t1.exon16;Parent=MS.gene65554.t1 |
| chr6.4 | CDS | 5619540 | 5619635 | 5619540 | ID=cds.MS.gene65554.t1;Parent=MS.gene65554.t1 |
| Gene Sequence |
| Protein sequence |
