Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82505.t1 | ABH10138.1 | 97.1 | 373 | 11 | 0 | 1 | 373 | 1 | 373 | 3.70E-206 | 727.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82505.t1 | Q39242 | 82.1 | 330 | 59 | 0 | 44 | 373 | 54 | 383 | 7.2e-158 | 558.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82505.t1 | A6XJ26 | 97.1 | 373 | 11 | 0 | 1 | 373 | 1 | 373 | 2.7e-206 | 727.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88347 | MS.gene82505 | PPI |
| MS.gene82505 | MS.gene86513 | PPI |
| MS.gene82505 | MS.gene65554 | PPI |
| MS.gene74672 | MS.gene82505 | PPI |
| MS.gene72691 | MS.gene82505 | PPI |
| MS.gene82505 | MS.gene019928 | PPI |
| MS.gene67036 | MS.gene82505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82505.t1 | MTR_5g024900 | 96.543 | 376 | 10 | 1 | 1 | 373 | 1 | 376 | 0.0 | 749 |
| MS.gene82505.t1 | MTR_1g053160 | 52.366 | 317 | 145 | 3 | 51 | 367 | 71 | 381 | 1.10e-113 | 341 |
| MS.gene82505.t1 | MTR_6g034475 | 77.358 | 53 | 12 | 0 | 155 | 207 | 2 | 54 | 5.12e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82505.t1 | AT2G17420 | 82.121 | 330 | 59 | 0 | 44 | 373 | 54 | 383 | 0.0 | 568 |
| MS.gene82505.t1 | AT4G35460 | 81.515 | 330 | 61 | 0 | 44 | 373 | 46 | 375 | 0.0 | 540 |
| MS.gene82505.t1 | AT2G17420 | 83.117 | 308 | 52 | 0 | 44 | 351 | 54 | 361 | 0.0 | 535 |
| MS.gene82505.t1 | AT2G41680 | 51.923 | 312 | 144 | 3 | 51 | 362 | 86 | 391 | 1.43e-114 | 343 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGATTTGAAGGTTTC+TGG | 0.081370 | 5.2:-15598028 | MS.gene82505:CDS |
| TCACCGAAGGGATACGTTTC+GGG | 0.179879 | 5.2:-15598191 | MS.gene82505:CDS |
| CGTCAACAGTCCGCTAAATT+TGG | 0.205219 | 5.2:-15598526 | MS.gene82505:CDS |
| TCTGGGTTGTTCTTTGCAAT+TGG | 0.250878 | 5.2:-15598010 | MS.gene82505:CDS |
| TTTGAGTAATGATAAGATTA+AGG | 0.284692 | 5.2:-15598143 | MS.gene82505:CDS |
| CTTCACCGAAACGGTTTCTA+AGG | 0.285123 | 5.2:-15598494 | MS.gene82505:CDS |
| TCAATGGTGGTTGAGGCTTT+TGG | 0.297880 | 5.2:-15598109 | MS.gene82505:CDS |
| TTCGGCACGGGCGGCGTATA+CGG | 0.300560 | 5.2:+15598684 | None:intergenic |
| TACGGCGGCGGTGTGGGCGG+CGG | 0.303675 | 5.2:+15598702 | None:intergenic |
| ATGATAAGATTAAGGTGATT+TGG | 0.304348 | 5.2:-15598135 | MS.gene82505:CDS |
| ACGGCGGCGGTGTGGGCGGC+GGG | 0.304944 | 5.2:+15598703 | None:intergenic |
| CTGGGTTGTTCTTTGCAATT+GGG | 0.312403 | 5.2:-15598009 | MS.gene82505:CDS |
| TGCAGGGTGCATGGCAGCTT+TGG | 0.342461 | 5.2:-15591146 | MS.gene82505:intron |
| GAATCAGTGAAAACCCTAAA+AGG | 0.351127 | 5.2:+15598454 | None:intergenic |
| GTTGTAAACCAACTCCTTGC+AGG | 0.353930 | 5.2:+15591110 | None:intergenic |
| GAGGATTCCGTCGGGGAAAC+CGG | 0.355019 | 5.2:+15598573 | None:intergenic |
| TTTCTGATTTGAAGGTTTCT+GGG | 0.369720 | 5.2:-15598027 | MS.gene82505:CDS |
| TTCACCGAAGGGATACGTTT+CGG | 0.374958 | 5.2:-15598192 | MS.gene82505:CDS |
| GTGATGGTCCTAATGGTTAC+TGG | 0.379009 | 5.2:-15598357 | MS.gene82505:CDS |
| GGCGTATACGGCGGCGGTGT+GGG | 0.386511 | 5.2:+15598696 | None:intergenic |
| CTTTGCAATTGGGCATGAAC+CGG | 0.389279 | 5.2:-15597999 | MS.gene82505:CDS |
| CGGCGGCGGTGTGGGCGGCG+GGG | 0.394828 | 5.2:+15598704 | None:intergenic |
| ATGGGGAGAATAAGAAGCTT+GGG | 0.403667 | 5.2:-15598084 | MS.gene82505:CDS |
| CAAATTTAGCGGACTGTTGA+CGG | 0.417215 | 5.2:+15598527 | None:intergenic |
| GCTATTACTGCTGCTGGATC+TGG | 0.422298 | 5.2:-15597845 | MS.gene82505:intron |
| AGAGTGATCCAGTTGTGGTT+TGG | 0.425091 | 5.2:+15598856 | None:intergenic |
| AAAAGAGGTTTCTGATTTGA+AGG | 0.426432 | 5.2:-15598035 | MS.gene82505:CDS |
| TAAGGTGATTTGGAATTCAA+TGG | 0.429889 | 5.2:-15598125 | MS.gene82505:CDS |
| GATCTTTCGTAACAAACCTT+TGG | 0.430114 | 5.2:-15598290 | MS.gene82505:CDS |
| ACGTACTGTTGAAGCTGATT+CGG | 0.431276 | 5.2:-15598431 | MS.gene82505:CDS |
| AGGCGCGTTGAGTGGAGATT+AGG | 0.433276 | 5.2:+15598815 | None:intergenic |
| CCGTTCACCGGCTCCGGTGA+TGG | 0.440754 | 5.2:-15598373 | MS.gene82505:CDS |
| GAAGAGGATTGGTTTGAGTT+CGG | 0.442464 | 5.2:+15598666 | None:intergenic |
| GTGGTGGTGAGTTGGCCTCC+TGG | 0.444418 | 5.2:+15598616 | None:intergenic |
| CGGCGTATACGGCGGCGGTG+TGG | 0.452801 | 5.2:+15598695 | None:intergenic |
| GCAAGGAGTTGGTTTACAAC+AGG | 0.454221 | 5.2:-15591107 | MS.gene82505:CDS |
| CCACGGTTCCAGTAACCATT+AGG | 0.457528 | 5.2:+15598349 | None:intergenic |
| CGGTTACCGTTCACCGGCTC+CGG | 0.460678 | 5.2:-15598379 | MS.gene82505:CDS |
| GGCTCCGGTGATGGTCCTAA+TGG | 0.460947 | 5.2:-15598364 | MS.gene82505:CDS |
| AGGATTCCGTCGGGGAAACC+GGG | 0.463354 | 5.2:+15598574 | None:intergenic |
| AGTCATGGTGGCGGAGGATA+CGG | 0.467664 | 5.2:+15598780 | None:intergenic |
| GAGGGTGGTGTTGTCAGTCA+TGG | 0.470209 | 5.2:+15598765 | None:intergenic |
| ATCCATCCTTCGAAGAGGAT+TGG | 0.474710 | 5.2:+15598655 | None:intergenic |
| CCTAATGGTTACTGGAACCG+TGG | 0.480720 | 5.2:-15598349 | MS.gene82505:CDS |
| ATCAACCTTAGAAACCGTTT+CGG | 0.485663 | 5.2:+15598489 | None:intergenic |
| GGGTATGTTGTGACGAAGCC+GGG | 0.487150 | 5.2:-15597935 | MS.gene82505:CDS |
| AATCCTCGGCGGCGAACTCA+TGG | 0.487221 | 5.2:-15598557 | MS.gene82505:CDS |
| ATGGCCAACGACATCGCTCC+AGG | 0.490028 | 5.2:-15598634 | MS.gene82505:CDS |
| CAATTAGAGCTTGATTCTGA+TGG | 0.491874 | 5.2:-15597956 | MS.gene82505:CDS |
| AACCAATCCTCTTCGAAGGA+TGG | 0.495853 | 5.2:-15598657 | MS.gene82505:CDS |
| AACCGTTTCGGTGAAGATCT+CGG | 0.497670 | 5.2:+15598501 | None:intergenic |
| GGTTTCCCCGACGGAATCCT+CGG | 0.502701 | 5.2:-15598571 | MS.gene82505:CDS |
| TTGGAATTCAATGGTGGTTG+AGG | 0.502804 | 5.2:-15598116 | MS.gene82505:CDS |
| GATGGGGAGAATAAGAAGCT+TGG | 0.505336 | 5.2:-15598085 | MS.gene82505:CDS |
| ACGGGCGGCGTATACGGCGG+CGG | 0.506979 | 5.2:+15598690 | None:intergenic |
| GAACATTTCCTGCAAGGAGT+TGG | 0.506995 | 5.2:-15591118 | MS.gene82505:CDS |
| AGACAAGCTATTACTGCTGC+TGG | 0.508524 | 5.2:-15597851 | MS.gene82505:CDS |
| GGAGGATACGGCGGAAGAGA+CGG | 0.513846 | 5.2:+15598792 | None:intergenic |
| AAAACTAAGCTCTGCATCAT+CGG | 0.514903 | 5.2:-15598733 | MS.gene82505:CDS |
| GGGTTTGAAGGTGGAGAATG+TGG | 0.515585 | 5.2:-15598062 | MS.gene82505:CDS |
| CCTTTGGCAGTGATCGGTGG+TGG | 0.516096 | 5.2:-15598274 | MS.gene82505:CDS |
| AACCGAGATCTTCACCGAAA+CGG | 0.516755 | 5.2:-15598503 | MS.gene82505:CDS |
| GCGAAACGGTTACCGTTCAC+CGG | 0.516776 | 5.2:-15598385 | MS.gene82505:CDS |
| GATTGGTTTGAGTTCGGCAC+GGG | 0.519127 | 5.2:+15598672 | None:intergenic |
| TCGCCGCCGAGGATTCCGTC+GGG | 0.521460 | 5.2:+15598565 | None:intergenic |
| TGGTTTGAGTTCGGCACGGG+CGG | 0.533615 | 5.2:+15598675 | None:intergenic |
| CTACCGGAGCTGTTGCGAAA+CGG | 0.536790 | 5.2:-15598399 | MS.gene82505:CDS |
| ACTGACGTCGAGAATTTCCC+CGG | 0.536816 | 5.2:-15598592 | MS.gene82505:CDS |
| GCCTCCTGGAGCGATGTCGT+TGG | 0.537048 | 5.2:+15598630 | None:intergenic |
| CGTCAGTTGTGGTGGTGAGT+TGG | 0.540223 | 5.2:+15598608 | None:intergenic |
| TAACCGTTTCGCAACAGCTC+CGG | 0.541587 | 5.2:+15598396 | None:intergenic |
| GGTGTTGTCAGTCATGGTGG+CGG | 0.542438 | 5.2:+15598771 | None:intergenic |
| AACAAACCTTTGGCAGTGAT+CGG | 0.545138 | 5.2:-15598280 | MS.gene82505:CDS |
| GTATACGGCGGCGGTGTGGG+CGG | 0.546275 | 5.2:+15598699 | None:intergenic |
| AGAGACGGAGGCGCGTTGAG+TGG | 0.548569 | 5.2:+15598807 | None:intergenic |
| TGGGTATGTTGTGACGAAGC+CGG | 0.551891 | 5.2:-15597936 | MS.gene82505:CDS |
| GAAATTCTCGACGTCAGTTG+TGG | 0.552541 | 5.2:+15598597 | None:intergenic |
| AAAGGTTTGTTACGAAAGAT+CGG | 0.552657 | 5.2:+15598292 | None:intergenic |
| AATTAGAGCTTGATTCTGAT+GGG | 0.555648 | 5.2:-15597955 | MS.gene82505:CDS |
| AAGCCCGAAACGTATCCCTT+CGG | 0.556116 | 5.2:+15598188 | None:intergenic |
| ACACTAGTCTTCGTAGTCCC+CGG | 0.559275 | 5.2:+15597917 | None:intergenic |
| AATTTCCCCGGTTTCCCCGA+CGG | 0.559331 | 5.2:-15598580 | MS.gene82505:CDS |
| ATTAGGACCATCACCGGAGC+CGG | 0.560496 | 5.2:+15598366 | None:intergenic |
| AAGCTCTGCATCATCGGCAG+TGG | 0.560600 | 5.2:-15598727 | MS.gene82505:CDS |
| ACTACGAAGACTAGTGTTGA+GGG | 0.561326 | 5.2:-15597911 | MS.gene82505:CDS |
| GATTCGGTTATCGTCGCTAC+CGG | 0.565517 | 5.2:-15598415 | MS.gene82505:CDS |
| GGAGAATGTGGCGACAAAAG+AGG | 0.573760 | 5.2:-15598050 | MS.gene82505:CDS |
| AATCCTCTTCGAAGGATGGA+TGG | 0.574752 | 5.2:-15598653 | MS.gene82505:CDS |
| CTCAAACCAATCCTCTTCGA+AGG | 0.575038 | 5.2:-15598661 | MS.gene82505:CDS |
| GTTGTCAGTCATGGTGGCGG+AGG | 0.576782 | 5.2:+15598774 | None:intergenic |
| GATCTCGGTTCCAAATTTAG+CGG | 0.579270 | 5.2:+15598516 | None:intergenic |
| GATGCAGAACATTTCCTGCA+AGG | 0.584210 | 5.2:-15591124 | MS.gene82505:CDS |
| TTCGCCGCCGAGGATTCCGT+CGG | 0.585796 | 5.2:+15598564 | None:intergenic |
| CGGTGGTGGAGATTCAGCTA+TGG | 0.589556 | 5.2:-15598260 | MS.gene82505:CDS |
| ATTCTCGACGTCAGTTGTGG+TGG | 0.593260 | 5.2:+15598600 | None:intergenic |
| GACTACGAAGACTAGTGTTG+AGG | 0.594010 | 5.2:-15597912 | MS.gene82505:CDS |
| AAGTTTACATCATTCACCGA+AGG | 0.594491 | 5.2:-15598204 | MS.gene82505:CDS |
| CCATCACCGGAGCCGGTGAA+CGG | 0.597742 | 5.2:+15598373 | None:intergenic |
| GGTGGTGTTGTCAGTCATGG+TGG | 0.598210 | 5.2:+15598768 | None:intergenic |
| GGCACGGGCGGCGTATACGG+CGG | 0.600378 | 5.2:+15598687 | None:intergenic |
| CCACCACCGATCACTGCCAA+AGG | 0.613847 | 5.2:+15598274 | None:intergenic |
| TGGTGGAGATTCAGCTATGG+AGG | 0.616555 | 5.2:-15598257 | MS.gene82505:CDS |
| TGGGGAGAATAAGAAGCTTG+GGG | 0.617354 | 5.2:-15598083 | MS.gene82505:CDS |
| CTAATGGTTACTGGAACCGT+GGG | 0.623174 | 5.2:-15598348 | MS.gene82505:CDS |
| AGTTTACATCATTCACCGAA+GGG | 0.627428 | 5.2:-15598203 | MS.gene82505:CDS |
| TCAGCTTGTGCTGTATGTGA+CGG | 0.630662 | 5.2:-15598322 | MS.gene82505:CDS |
| GGATTCCGTCGGGGAAACCG+GGG | 0.631914 | 5.2:+15598575 | None:intergenic |
| TGAAAAGAGTGATCCAGTTG+TGG | 0.634727 | 5.2:+15598851 | None:intergenic |
| GGTGATTTGGAATTCAATGG+TGG | 0.638272 | 5.2:-15598122 | MS.gene82505:CDS |
| GTTCCATGAGTTCGCCGCCG+AGG | 0.639562 | 5.2:+15598554 | None:intergenic |
| GGATACGGCGGAAGAGACGG+AGG | 0.641171 | 5.2:+15598795 | None:intergenic |
| TGGCCATCCATCCTTCGAAG+AGG | 0.649138 | 5.2:+15598650 | None:intergenic |
| CATGGTGGCGGAGGATACGG+CGG | 0.656296 | 5.2:+15598783 | None:intergenic |
| AAACCTTTGGCAGTGATCGG+TGG | 0.660900 | 5.2:-15598277 | MS.gene82505:CDS |
| GGATTGGTTTGAGTTCGGCA+CGG | 0.665823 | 5.2:+15598671 | None:intergenic |
| CGCCGCCGAGGATTCCGTCG+GGG | 0.669377 | 5.2:+15598566 | None:intergenic |
| GTAACCATTAGGACCATCAC+CGG | 0.674090 | 5.2:+15598360 | None:intergenic |
| GGTATGTTGTGACGAAGCCG+GGG | 0.674837 | 5.2:-15597934 | MS.gene82505:CDS |
| CAGCACAAGCTGAAATCCCA+CGG | 0.675347 | 5.2:+15598332 | None:intergenic |
| GGGGAGAATAAGAAGCTTGG+GGG | 0.680934 | 5.2:-15598082 | MS.gene82505:CDS |
| TTCCCCGACGGAATCCTCGG+CGG | 0.691557 | 5.2:-15598568 | MS.gene82505:CDS |
| GCCAACGACATCGCTCCAGG+AGG | 0.696880 | 5.2:-15598631 | MS.gene82505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 15591093 | 15598896 | 15591093 | ID=MS.gene82505 |
| chr5.2 | mRNA | 15591093 | 15598896 | 15591093 | ID=MS.gene82505.t1;Parent=MS.gene82505 |
| chr5.2 | exon | 15597846 | 15598896 | 15597846 | ID=MS.gene82505.t1.exon1;Parent=MS.gene82505.t1 |
| chr5.2 | CDS | 15597846 | 15598896 | 15597846 | ID=cds.MS.gene82505.t1;Parent=MS.gene82505.t1 |
| chr5.2 | exon | 15591093 | 15591163 | 15591093 | ID=MS.gene82505.t1.exon2;Parent=MS.gene82505.t1 |
| chr5.2 | CDS | 15591093 | 15591163 | 15591093 | ID=cds.MS.gene82505.t1;Parent=MS.gene82505.t1 |
| Gene Sequence |
| Protein sequence |