AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72910.t1 MTR_5g028190 93.769 337 21 0 286 622 199 535 0.0 653
MS.gene72910.t1 MTR_5g028190 80.829 193 36 1 1 192 8 200 1.63e-103 324
MS.gene72910.t1 MTR_5g028130 78.466 339 69 2 286 621 1 338 0.0 533
MS.gene72910.t1 MTR_5g028450 66.554 296 93 2 327 618 1 294 2.59e-128 380
MS.gene72910.t1 MTR_5g028930 50.852 352 164 5 274 619 268 616 1.83e-105 332
MS.gene72910.t1 MTR_5g028930 42.857 182 88 5 4 175 89 264 3.55e-24 107
MS.gene72910.t1 MTR_5g028110 77.202 193 26 1 430 622 2 176 7.57e-97 294
MS.gene72910.t1 MTR_3g055310 31.440 493 254 8 123 614 39 448 1.80e-69 233
MS.gene72910.t1 MTR_3g055310 31.440 493 254 8 123 614 67 476 3.32e-69 233
MS.gene72910.t1 MTR_3g055310 31.440 493 254 8 123 614 65 474 4.60e-69 233
MS.gene72910.t1 MTR_3g055310 31.440 493 254 8 123 614 92 501 1.03e-68 232
MS.gene72910.t1 MTR_3g055310 31.524 479 244 8 137 614 1 396 2.43e-67 226
MS.gene72910.t1 MTR_2g438740 31.414 573 318 18 66 621 55 569 4.17e-67 229
MS.gene72910.t1 MTR_2g438740 34.568 162 89 6 12 173 80 224 3.78e-12 69.7
MS.gene72910.t1 MTR_5g091220 41.071 336 192 4 285 618 270 601 4.26e-66 228
MS.gene72910.t1 MTR_3g055310 36.556 331 198 4 285 614 14 333 4.60e-65 218
MS.gene72910.t1 MTR_6g017215 57.143 182 78 0 432 613 8 189 1.50e-63 209
MS.gene72910.t1 MTR_2g438440 37.430 358 200 5 262 618 351 685 1.46e-60 214
MS.gene72910.t1 MTR_5g028690 48.515 202 99 1 423 619 34 235 5.16e-60 201
MS.gene72910.t1 MTR_2g020510 28.416 644 376 18 10 600 42 653 4.32e-59 210
MS.gene72910.t1 MTR_2g438400 39.465 299 173 4 327 622 255 548 5.15e-59 207
MS.gene72910.t1 MTR_3g455790 36.025 322 196 5 284 601 264 579 5.87e-55 197
MS.gene72910.t1 MTR_2g438700 39.590 293 172 4 327 617 399 688 1.11e-54 198
MS.gene72910.t1 MTR_2g438720 38.926 298 169 6 327 618 401 691 4.61e-54 196
MS.gene72910.t1 MTR_2g438640 38.567 293 176 3 327 618 401 690 2.99e-53 194
MS.gene72910.t1 MTR_2g438760 36.054 294 184 3 330 621 273 564 2.57e-52 189
MS.gene72910.t1 MTR_2g438760 30.978 184 108 6 10 191 84 250 9.27e-14 74.7
MS.gene72910.t1 MTR_2g020450 27.313 670 388 20 10 614 42 677 2.28e-51 189
MS.gene72910.t1 MTR_2g020470 26.382 633 385 19 10 600 42 635 7.48e-50 184
MS.gene72910.t1 MTR_5g028510 48.780 205 82 2 5 188 124 326 1.30e-49 176
MS.gene72910.t1 MTR_2g438640 36.860 293 155 3 327 618 401 664 4.07e-48 179
MS.gene72910.t1 MTR_3g452020 33.228 316 205 4 287 600 92 403 2.06e-46 169
MS.gene72910.t1 MTR_3g452020 33.030 330 211 5 287 610 268 593 3.61e-45 170
MS.gene72910.t1 MTR_2g017930 26.856 633 402 19 12 614 39 640 5.19e-44 167
MS.gene72910.t1 MTR_5g028900 49.080 163 67 3 432 590 4 154 6.80e-44 154
MS.gene72910.t1 MTR_3g051060 25.436 688 429 17 2 616 50 726 9.18e-44 167
MS.gene72910.t1 MTR_5g085360 25.612 695 405 22 5 611 52 722 2.95e-41 160
MS.gene72910.t1 MTR_5g028840 41.026 195 110 1 430 619 2 196 2.11e-39 144
MS.gene72910.t1 MTR_5g028830 38.267 277 142 10 156 429 38 288 4.58e-39 145
MS.gene72910.t1 MTR_3g058570 31.699 306 188 4 326 619 83 379 4.57e-37 142
MS.gene72910.t1 MTR_3g050500 24.633 682 421 21 8 614 56 719 3.77e-35 142
MS.gene72910.t1 MTR_2g438640 39.474 190 113 2 430 618 399 587 1.29e-31 130
MS.gene72910.t1 MTR_5g085350 31.959 291 192 4 328 614 425 713 8.67e-29 122
MS.gene72910.t1 MTR_5g085350 31.959 291 192 4 328 614 438 726 1.07e-28 122
MS.gene72910.t1 MTR_5g028920 41.975 162 87 4 273 432 71 227 1.41e-27 112
MS.gene72910.t1 MTR_5g085340 29.730 296 202 4 327 617 443 737 3.17e-27 117
MS.gene72910.t1 MTR_5g085340 29.744 195 116 7 5 191 52 233 5.36e-12 69.3
MS.gene72910.t1 MTR_1g113820 32.576 264 150 10 326 572 275 527 2.97e-22 101
MS.gene72910.t1 MTR_2g438470 42.222 135 75 2 372 506 366 497 5.80e-22 100
MS.gene72910.t1 MTR_1g113730 28.889 225 150 5 318 539 37 254 6.10e-19 89.4
MS.gene72910.t1 MTR_1g113760 31.050 219 139 5 326 539 239 450 1.98e-17 86.3
MS.gene72910.t1 MTR_3g058550 30.729 192 110 5 10 188 9 190 5.40e-15 75.1
MS.gene72910.t1 MTR_6g016185 28.141 199 125 6 355 552 16 197 1.35e-14 73.2
MS.gene72910.t1 MTR_3g055750 29.592 196 117 6 8 198 67 246 8.35e-13 70.9
MS.gene72910.t1 MTR_2g438580 39.759 83 49 1 444 526 2 83 8.36e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72910.t1 AT3G18670 36.160 625 321 16 5 618 81 638 2.09e-120 372
MS.gene72910.t1 AT3G18670 43.452 336 183 5 286 618 252 583 4.98e-86 280
MS.gene72910.t1 AT3G18670 34.536 194 103 8 5 190 81 258 3.27e-23 104
MS.gene72910.t1 AT5G04690 32.455 607 330 12 15 618 116 645 4.06e-85 280
MS.gene72910.t1 AT5G04690 32.072 608 317 14 15 618 116 631 2.60e-80 266
MS.gene72910.t1 AT5G04680 31.392 618 364 15 15 618 108 679 1.17e-75 255
MS.gene72910.t1 AT5G04730 30.229 612 331 14 22 618 58 588 1.35e-75 253
MS.gene72910.t1 AT5G04700 40.469 341 195 6 282 618 319 655 2.78e-66 229
MS.gene72910.t1 AT5G04700 31.868 182 111 3 15 194 121 291 3.96e-18 89.0
MS.gene72910.t1 AT5G35810 38.816 304 175 5 327 622 35 335 8.75e-64 214
MS.gene72910.t1 AT5G04690 38.757 338 200 5 282 618 280 611 2.03e-63 221
MS.gene72910.t1 AT5G04690 32.515 163 97 3 15 175 116 267 9.07e-14 75.1
MS.gene72910.t1 AT5G04680 35.920 348 209 5 282 618 183 527 2.57e-57 202
MS.gene72910.t1 AT5G04680 32.919 161 95 4 35 194 7 155 3.64e-14 75.9
MS.gene72910.t1 AT5G04680 35.920 348 209 5 282 618 292 636 2.07e-56 202
MS.gene72910.t1 AT5G04680 30.601 183 98 6 15 194 108 264 4.12e-11 66.6
MS.gene72910.t1 AT5G04680 35.920 348 209 5 282 618 306 650 2.64e-56 202
MS.gene72910.t1 AT5G04680 32.787 183 108 5 15 194 108 278 1.11e-15 81.3
MS.gene72910.t1 AT3G54065 45.930 172 87 1 416 581 8 179 1.29e-44 159
MS.gene72910.t1 AT5G04700 31.868 182 111 3 15 194 121 291 4.79e-18 87.8
MS.gene72910.t1 AT5G04700 32.667 150 97 3 282 430 319 465 1.55e-13 73.9
MS.gene72910.t1 AT4G03500 26.119 268 168 8 330 577 298 555 2.92e-11 67.0
MS.gene72910.t1 AT4G03500 26.119 268 168 8 330 577 298 555 2.92e-11 67.0
MS.gene72910.t1 AT4G03500 26.119 268 168 8 330 577 321 578 3.08e-11 67.0

Find 110 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATCTTGCTGGAAATTT+AGG 0.060971 5.1:-19042647 MS.gene72910:CDS
TACCATACACTTTGCTATTT+TGG 0.065585 5.1:+19045758 None:intergenic
TCATATTCACATGTTATTTC+AGG 0.196798 5.1:-19043476 MS.gene72910:CDS
TGTATCAATGCAGAAATATT+TGG 0.218464 5.1:-19045549 MS.gene72910:intron
TACATCTTGCTGGAAATTTA+GGG 0.275503 5.1:-19042646 MS.gene72910:CDS
TTCCCAAGTGGCAACAAATA+TGG 0.279529 5.1:-19045319 MS.gene72910:CDS
CACTAGCTCCTTGTGGCTTT+CGG 0.282604 5.1:+19041553 None:intergenic
ACTTAAGTGGCAAAGACTTT+AGG 0.288422 5.1:+19041276 None:intergenic
ATACATGATGCAAGTGTAAA+TGG 0.302746 5.1:-19042719 MS.gene72910:CDS
ATAAAATCTCTCTTTGCATT+TGG 0.303142 5.1:+19042585 None:intergenic
AAGCTAACCCCGACCTCTTA+TGG 0.304029 5.1:-19042814 MS.gene72910:CDS
TCTTCTTTAGGAAGGATCTT+TGG 0.321301 5.1:-19043688 MS.gene72910:intron
TCTTGTTCCTAAAACTCATT+TGG 0.331573 5.1:-19045622 MS.gene72910:CDS
TGTTGGTCTTCATAGATAAA+AGG 0.345983 5.1:+19045703 None:intergenic
AATAATCAGTAAGTTTCATT+TGG 0.357146 5.1:+19041058 None:intergenic
CGAAGAAATTGTGAAGAAAT+TGG 0.359125 5.1:-19045868 MS.gene72910:CDS
CGAAAAGTGCAAAACTTATA+CGG 0.363988 5.1:-19044331 MS.gene72910:CDS
AACTGGAATTTCACCATTGT+TGG 0.367823 5.1:+19045686 None:intergenic
ACTTCAATCCTACTCTTCAT+TGG 0.375650 5.1:-19041332 MS.gene72910:CDS
ATTCCGCAAGTACATCTCTT+AGG 0.378291 5.1:-19043643 MS.gene72910:intron
GAAGGTACTAGAACAATAAC+TGG 0.383908 5.1:+19041125 None:intergenic
TTCACTTGCTATGCTCTTGA+AGG 0.385311 5.1:-19041192 MS.gene72910:CDS
AATACCCTCTTACATCTTGC+TGG 0.391620 5.1:-19042656 MS.gene72910:CDS
CCAGGACCTATCGGTCTTGA+TGG 0.393800 5.1:+19044133 None:intergenic
AAAGTGTATGGTAGAAAAGA+AGG 0.397258 5.1:-19045748 MS.gene72910:CDS
CATAGCAAGTGAAGCACAAA+AGG 0.400124 5.1:+19041202 None:intergenic
AGTTCTTCTTGCTGCAGCTA+AGG 0.402235 5.1:-19045667 MS.gene72910:CDS
GCTGCAGCTTTCACTGTCCC+TGG 0.408383 5.1:-19041452 MS.gene72910:CDS
TTAGTAATATTAAAGTTGTC+TGG 0.412110 5.1:-19043451 MS.gene72910:intron
TTTGATCTTCACCGTAGATC+TGG 0.414607 5.1:-19042617 MS.gene72910:CDS
TCAATAGACCATAAGAGGTC+GGG 0.424370 5.1:+19042806 None:intergenic
TTTCTCTGTGGTGTCCATGA+TGG 0.430022 5.1:-19041228 MS.gene72910:CDS
GCTCTTGTTGCTGAGTTGAC+TGG 0.432007 5.1:-19045786 MS.gene72910:CDS
TTAGCTGCAGCAAGAAGAAC+TGG 0.432101 5.1:+19045669 None:intergenic
CTGTCTTGATTGTTTCCACC+AGG 0.436340 5.1:+19041434 None:intergenic
TCTCTTTGCATTTGGAGAGC+AGG 0.442521 5.1:+19042593 None:intergenic
CATGCGTGCTAATGCGTACA+AGG 0.443042 5.1:+19045351 None:intergenic
GAAGAGTAGGATTGAAGTTG+AGG 0.458968 5.1:+19041337 None:intergenic
CTCCGGTCTGAATGTCTGCC+AGG 0.465869 5.1:+19044115 None:intergenic
GGGAGGCCAGGTTATTGATC+AGG 0.467530 5.1:-19045727 MS.gene72910:CDS
AATCCATATTTGTTGCCACT+TGG 0.469531 5.1:+19045316 None:intergenic
AGTGAGAAGAAAATCAAAAC+AGG 0.471527 5.1:-19044092 MS.gene72910:intron
CTTCATGTTGCAGCGATAGC+TGG 0.474395 5.1:-19045894 MS.gene72910:CDS
CACTTGCATCATGTATGAGT+TGG 0.475670 5.1:+19042726 None:intergenic
TCAACTCAGCAACAAGAGCT+AGG 0.480624 5.1:+19045790 None:intergenic
CACCAAAATAGCAAAGTGTA+TGG 0.486181 5.1:-19045760 MS.gene72910:CDS
GTGAAGAAATTGGTGAAGGA+AGG 0.488215 5.1:-19045858 MS.gene72910:CDS
AATTTCCAGCAAGATGTAAG+AGG 0.488916 5.1:+19042651 None:intergenic
CTGACTTTGATTCTGATCTG+TGG 0.491841 5.1:+19045392 None:intergenic
ATCCATATTTGTTGCCACTT+GGG 0.493011 5.1:+19045317 None:intergenic
AATCGTGCACCCCAAGTGTA+AGG 0.493640 5.1:-19041618 MS.gene72910:CDS
TAACGGCGCGTTATGCAGAA+AGG 0.500456 5.1:-19041304 MS.gene72910:CDS
GTGGCAATTGTGGGAATCGT+TGG 0.501784 5.1:+19045419 None:intergenic
GGTAGAAAAGAAGGGAGGCC+AGG 0.502333 5.1:-19045739 MS.gene72910:CDS
GATTCTGATCTGTGGGTAAG+TGG 0.505508 5.1:+19045400 None:intergenic
TGTAACAAATGCTGTTCTAC+CGG 0.505604 5.1:-19044296 MS.gene72910:CDS
GTTCTTCTTGCTGCAGCTAA+GGG 0.506106 5.1:-19045666 MS.gene72910:CDS
AACATGAAGAATACTCCTTC+CGG 0.514614 5.1:+19045908 None:intergenic
CTTTAGGAAGGATCTTTGGA+TGG 0.516657 5.1:-19043684 MS.gene72910:intron
CACAAGGAGCTAGTGAAAGC+TGG 0.525545 5.1:-19041545 MS.gene72910:CDS
AACGGCGCGTTATGCAGAAA+GGG 0.526696 5.1:-19041303 MS.gene72910:CDS
GAATGTCTGCCAGGACCTAT+CGG 0.528039 5.1:+19044124 None:intergenic
ATCAATAGACCATAAGAGGT+CGG 0.531176 5.1:+19042805 None:intergenic
AAGTGTATGGTAGAAAAGAA+GGG 0.535226 5.1:-19045747 MS.gene72910:CDS
TGACTTTGATTCTGATCTGT+GGG 0.537591 5.1:+19045393 None:intergenic
AGAGCGAAAAGTAACTTAAG+TGG 0.544621 5.1:+19041263 None:intergenic
AAAGGTCCTGATCAATAACC+TGG 0.552467 5.1:+19045721 None:intergenic
CAGCTTTCACTAGCTCCTTG+TGG 0.553008 5.1:+19041546 None:intergenic
CCATCAAGACCGATAGGTCC+TGG 0.553888 5.1:-19044133 MS.gene72910:CDS
TTGCCACTTGGGAACACAGA+CGG 0.560181 5.1:+19045328 None:intergenic
AAATGGGCAAAAGATACAGC+TGG 0.563052 5.1:-19041518 MS.gene72910:CDS
TTAGAATTCCAATGAAGAGT+AGG 0.566020 5.1:+19041324 None:intergenic
CTGTGGGTAAGTGGCAATTG+TGG 0.567316 5.1:+19045409 None:intergenic
AGCACAAAAGGAAACCATCA+TGG 0.568257 5.1:+19041214 None:intergenic
TAAGGAATCTGAACTGAGAG+AGG 0.568722 5.1:-19042906 MS.gene72910:CDS
TGTGGGTAAGTGGCAATTGT+GGG 0.569318 5.1:+19045410 None:intergenic
TGAAGAAATTGGTGAAGGAA+GGG 0.574748 5.1:-19045857 MS.gene72910:CDS
ATGCTCTTGAAGGGACATGA+AGG 0.576154 5.1:-19041182 MS.gene72910:CDS
CAATAGACCATAAGAGGTCG+GGG 0.579829 5.1:+19042807 None:intergenic
GGAGAGCAGGACCAGATCTA+CGG 0.583724 5.1:+19042606 None:intergenic
ACTCTTCATTGGAATTCTAA+CGG 0.586393 5.1:-19041321 MS.gene72910:CDS
AGATCTACGGTGAAGATCAA+AGG 0.590679 5.1:+19042619 None:intergenic
TCACTTGCTATGCTCTTGAA+GGG 0.593021 5.1:-19041191 MS.gene72910:CDS
CAACTCAGCAACAAGAGCTA+GGG 0.594380 5.1:+19045791 None:intergenic
GCAGCTTTCACTGTCCCTGG+TGG 0.601445 5.1:-19041449 MS.gene72910:CDS
TTTCCACGTCTTCATCCGGA+AGG 0.601903 5.1:-19045923 MS.gene72910:CDS
ATGTTGAAAGCAGCTAAGCA+TGG 0.602004 5.1:-19042866 MS.gene72910:CDS
TTATCTATGAAGACCAACAA+TGG 0.605556 5.1:-19045699 MS.gene72910:CDS
AATTGTGAAGAAATTGGTGA+AGG 0.605805 5.1:-19045862 MS.gene72910:CDS
CAACTCAAAACATCTTCCAC+AGG 0.607708 5.1:-19044268 MS.gene72910:intron
ATTTCCAGCAAGATGTAAGA+GGG 0.615523 5.1:+19042652 None:intergenic
ATGAAGAGTCGCAACTGTGA+AGG 0.615755 5.1:+19041107 None:intergenic
GAATCAAAGTCAGAATCAGA+TGG 0.618803 5.1:-19045382 MS.gene72910:CDS
ATGCCGTCTGTGTTCCCAAG+TGG 0.619107 5.1:-19045331 MS.gene72910:CDS
GTCCTGGCAGACATTCAGAC+CGG 0.619953 5.1:-19044117 MS.gene72910:CDS
GTGAAAATGAAAGACAATCG+TGG 0.626532 5.1:-19045822 MS.gene72910:CDS
GAACAGCATTTGTTACAATG+AGG 0.629284 5.1:+19044302 None:intergenic
ACTCCTTCCGGATGAAGACG+TGG 0.630969 5.1:+19045920 None:intergenic
TCTACGGTGAAGATCAAAGG+AGG 0.647119 5.1:+19042622 None:intergenic
GATATTTACCGAAAGCCACA+AGG 0.651211 5.1:-19041561 MS.gene72910:CDS
CTTTCGGTAAATATCTCACG+AGG 0.651762 5.1:+19041569 None:intergenic
GAAAGCTGCAGCAAACATGA+TGG 0.654889 5.1:+19041463 None:intergenic
TGTCTTGATTGTTTCCACCA+GGG 0.662086 5.1:+19041435 None:intergenic
CTACCTAAGAGATGTACTTG+CGG 0.662707 5.1:+19043640 None:intergenic
GGTGGAAACAATCAAGACAG+TGG 0.670462 5.1:-19041431 MS.gene72910:CDS
TATTATCAAATGCATCTACA+CGG 0.671415 5.1:+19042675 None:intergenic
CAAACACCATCAAGACCGAT+AGG 0.682312 5.1:-19044139 MS.gene72910:CDS
ATGCGTGCTAATGCGTACAA+GGG 0.686229 5.1:+19045352 None:intergenic
CTACGGTGAAGATCAAAGGA+GGG 0.699607 5.1:+19042623 None:intergenic
TGTATGGTAGAAAAGAAGGG+AGG 0.739911 5.1:-19045744 MS.gene72910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTTATAAATAGATAA+AGG - chr5.1:19042825-19042844 MS.gene72910:CDS 10.0%
!! ATTCAAATATATTATATTAG+GGG - chr5.1:19042284-19042303 MS.gene72910:intron 10.0%
!! TATAATAAAGTATATATGTT+TGG + chr5.1:19045283-19045302 None:intergenic 10.0%
!!! ATATATATATTTAAAGTTCA+TGG - chr5.1:19042605-19042624 MS.gene72910:CDS 10.0%
!!! TATTTTTTATTATGCATTTA+TGG + chr5.1:19041781-19041800 None:intergenic 10.0%
!! ATACAAAAGTGATAAAATAT+AGG + chr5.1:19042470-19042489 None:intergenic 15.0%
!! ATATATAGAAAATGAGAAAA+GGG + chr5.1:19043257-19043276 None:intergenic 15.0%
!! ATATATTAAATATATCCAAC+CGG + chr5.1:19042587-19042606 None:intergenic 15.0%
!! TAAAGTTATGTTAATGTTAA+TGG - chr5.1:19041501-19041520 MS.gene72910:CDS 15.0%
!! TACAAAAGTGATAAAATATA+GGG + chr5.1:19042469-19042488 None:intergenic 15.0%
!! TATACTTTATTATAGCAAAA+TGG - chr5.1:19045289-19045308 MS.gene72910:intron 15.0%
!! TATATATAGAAAATGAGAAA+AGG + chr5.1:19043258-19043277 None:intergenic 15.0%
!! TCTATTGATAAAAATAAAAG+AGG - chr5.1:19044209-19044228 MS.gene72910:intron 15.0%
!!! ACTAACTATATTTTATGAAA+TGG - chr5.1:19045338-19045357 MS.gene72910:CDS 15.0%
!!! CTTAAATTCTTGAATTTTTT+GGG + chr5.1:19044078-19044097 None:intergenic 15.0%
!!! GAAAAAAATGTTTTCAATTT+CGG + chr5.1:19043583-19043602 None:intergenic 15.0%
!!! TGTTAATGGATTTTTTTTTA+CGG - chr5.1:19041515-19041534 MS.gene72910:CDS 15.0%
!!! TTTTATCACTTTTGTATATT+TGG - chr5.1:19042473-19042492 MS.gene72910:intron 15.0%
!!! TTTTTATTTTTTAGTTCACA+GGG - chr5.1:19044674-19044693 MS.gene72910:intron 15.0%
!!! TTTTTTAAGTAATCAACAAA+TGG + chr5.1:19041817-19041836 None:intergenic 15.0%
!!! TTTTTTATTTTTTAGTTCAC+AGG - chr5.1:19044673-19044692 MS.gene72910:intron 15.0%
!! AATAACCTCATAAGAAATAA+AGG + chr5.1:19043605-19043624 None:intergenic 20.0%
!! CCAAAAAATTCAAGAATTTA+AGG - chr5.1:19044076-19044095 MS.gene72910:intron 20.0%
!! GTTCAAAATGCAAAATAAAT+AGG - chr5.1:19044639-19044658 MS.gene72910:intron 20.0%
!! TACAAAATACTTGATATGTT+GGG + chr5.1:19043860-19043879 None:intergenic 20.0%
!! TATATTTGAATAAACTCTGA+TGG + chr5.1:19042275-19042294 None:intergenic 20.0%
!! TTAAAGAAATAAGGTGAAAA+AGG + chr5.1:19045037-19045056 None:intergenic 20.0%
!! TTAGTAATATTAAAGTTGTC+TGG - chr5.1:19043549-19043568 MS.gene72910:intron 20.0%
!!! AAACTAGTCTATATTTACTT+TGG - chr5.1:19043913-19043932 MS.gene72910:intron 20.0%
!!! AAGTTTGAAACTCTAAAATA+AGG + chr5.1:19044569-19044588 None:intergenic 20.0%
!!! CCTTAAATTCTTGAATTTTT+TGG + chr5.1:19044079-19044098 None:intergenic 20.0%
!!! GTGTCTTTTTTTTATTACAA+CGG - chr5.1:19044825-19044844 MS.gene72910:intron 20.0%
!!! TATCATTTAAGTTGTACTAA+CGG - chr5.1:19043886-19043905 MS.gene72910:intron 20.0%
!!! TTTATTTCTTATGAGGTTAT+TGG - chr5.1:19043604-19043623 MS.gene72910:intron 20.0%
!!! TTTTACTTGAAAATGATTCT+TGG + chr5.1:19043106-19043125 None:intergenic 20.0%
!!! TTTTATTTTTTAGTTCACAG+GGG - chr5.1:19044675-19044694 MS.gene72910:intron 20.0%
!!! TTTTTCCTTTATTTCTTATG+AGG - chr5.1:19043597-19043616 MS.gene72910:intron 20.0%
! AAGAAAACACTGCTTTAATT+TGG + chr5.1:19042231-19042250 None:intergenic 25.0%
! ACAAAATACTTGATATGTTG+GGG + chr5.1:19043859-19043878 None:intergenic 25.0%
! ACAACAAAGAGTTGTTTAAA+CGG + chr5.1:19042032-19042051 None:intergenic 25.0%
! AGCATATAGAAAAGGATATT+AGG + chr5.1:19041965-19041984 None:intergenic 25.0%
! ATAAAATCTCTCTTTGCATT+TGG + chr5.1:19044418-19044437 None:intergenic 25.0%
! ATGCAGAAATATTTGGTAAA+TGG - chr5.1:19041458-19041477 MS.gene72910:CDS 25.0%
! ATTATATTAGGGGATTGATA+TGG - chr5.1:19042294-19042313 MS.gene72910:intron 25.0%
! CAAGATAAAATCAAGTCAAA+CGG + chr5.1:19044903-19044922 None:intergenic 25.0%
! CAATAACTATAACTACATTG+TGG + chr5.1:19042187-19042206 None:intergenic 25.0%
! CTACAAAATACTTGATATGT+TGG + chr5.1:19043861-19043880 None:intergenic 25.0%
! GGTGCAAAATTAATATCATA+AGG - chr5.1:19044617-19044636 MS.gene72910:intron 25.0%
! TATTATCAAATGCATCTACA+CGG + chr5.1:19044328-19044347 None:intergenic 25.0%
! TCTCAAAACTGAAAACAAAA+TGG + chr5.1:19042646-19042665 None:intergenic 25.0%
! TGTAGTTATAGTTATTGTCA+TGG - chr5.1:19042190-19042209 MS.gene72910:intron 25.0%
! TGTATCAATGCAGAAATATT+TGG - chr5.1:19041451-19041470 MS.gene72910:CDS 25.0%
! TTATTCTCTCTTTCTTCTTT+AGG - chr5.1:19043300-19043319 MS.gene72910:intron 25.0%
!! AAATGCAAAGAGAGATTTTA+TGG - chr5.1:19044417-19044436 MS.gene72910:intron 25.0%
!! AAGAGAGATTTTATGGTTTA+AGG - chr5.1:19044424-19044443 MS.gene72910:intron 25.0%
!! AATTCTTCCAAATGAGTTTT+AGG + chr5.1:19041388-19041407 None:intergenic 25.0%
!! CTTCTTATCTTCTACATTTT+TGG + chr5.1:19045411-19045430 None:intergenic 25.0%
!! TTTTATCAATAGACCATAAG+AGG + chr5.1:19044202-19044221 None:intergenic 25.0%
!!! ATCATTTAAGTTGTACTAAC+GGG - chr5.1:19043887-19043906 MS.gene72910:intron 25.0%
!!! ATTTTGATGACTTCTTTTTC+AGG - chr5.1:19043489-19043508 MS.gene72910:CDS 25.0%
!!! ATTTTTGGTATATACAATCG+AGG + chr5.1:19042953-19042972 None:intergenic 25.0%
!!! TCATATTCACATGTTATTTC+AGG - chr5.1:19043524-19043543 MS.gene72910:intron 25.0%
!!! TGGTTGACTATTATTTTAGA+GGG - chr5.1:19042493-19042512 MS.gene72910:intron 25.0%
!!! TTGGTTGACTATTATTTTAG+AGG - chr5.1:19042492-19042511 MS.gene72910:intron 25.0%
AAAGTGTATGGTAGAAAAGA+AGG - chr5.1:19041252-19041271 MS.gene72910:CDS 30.0%
AACCTAAGTGTGTATCATAT+AGG + chr5.1:19045235-19045254 None:intergenic 30.0%
AAGTGTATGGTAGAAAAGAA+GGG - chr5.1:19041253-19041272 MS.gene72910:CDS 30.0%
AATTGTGAAGAAATTGGTGA+AGG - chr5.1:19041138-19041157 MS.gene72910:CDS 30.0%
ACAACAAATGAAAACGTCAA+CGG + chr5.1:19042110-19042129 None:intergenic 30.0%
ACTCTTCATTGGAATTCTAA+CGG - chr5.1:19045679-19045698 MS.gene72910:CDS 30.0%
AGTGAGAAGAAAATCAAAAC+AGG - chr5.1:19042908-19042927 MS.gene72910:CDS 30.0%
ATACATGATGCAAGTGTAAA+TGG - chr5.1:19044281-19044300 MS.gene72910:CDS 30.0%
ATAGAAAAGGATATTAGGTG+TGG + chr5.1:19041960-19041979 None:intergenic 30.0%
ATATGTTGTCATACTAGATG+TGG - chr5.1:19041545-19041564 MS.gene72910:CDS 30.0%
CAGTCATGATTAAAAAAGTG+TGG + chr5.1:19041998-19042017 None:intergenic 30.0%
CGAAGAAATTGTGAAGAAAT+TGG - chr5.1:19041132-19041151 MS.gene72910:CDS 30.0%
CTAGAGAGCTTAAAGAAATA+AGG + chr5.1:19045046-19045065 None:intergenic 30.0%
GTGATGTGTTGTCTTAATAA+TGG - chr5.1:19043679-19043698 MS.gene72910:CDS 30.0%
TACATCTTGCTGGAAATTTA+GGG - chr5.1:19044354-19044373 MS.gene72910:intron 30.0%
TAGAAAAGGATATTAGGTGT+GGG + chr5.1:19041959-19041978 None:intergenic 30.0%
TAGGCACTTTGTATAAACTA+TGG + chr5.1:19045216-19045235 None:intergenic 30.0%
TCTTGTTCCTAAAACTCATT+TGG - chr5.1:19041378-19041397 MS.gene72910:CDS 30.0%
TGTTGTCTTAATAATGGCTA+TGG - chr5.1:19043685-19043704 MS.gene72910:intron 30.0%
TTACATCTTGCTGGAAATTT+AGG - chr5.1:19044353-19044372 MS.gene72910:intron 30.0%
TTAGAATTCCAATGAAGAGT+AGG + chr5.1:19045679-19045698 None:intergenic 30.0%
TTATCTATGAAGACCAACAA+TGG - chr5.1:19041301-19041320 MS.gene72910:CDS 30.0%
TTCACATGCACACAAAAATA+GGG - chr5.1:19044476-19044495 MS.gene72910:intron 30.0%
TTCTTGCTCTTACTATGATT+GGG + chr5.1:19043067-19043086 None:intergenic 30.0%
TTTATGAAATGGATGATTGC+AGG - chr5.1:19045349-19045368 MS.gene72910:CDS 30.0%
TTTCACATCCACAAATATGA+GGG - chr5.1:19043387-19043406 MS.gene72910:intron 30.0%
TTTCACATGCACACAAAAAT+AGG - chr5.1:19044475-19044494 MS.gene72910:intron 30.0%
! AAGGCTTGTGATATTTTCAT+TGG + chr5.1:19045018-19045037 None:intergenic 30.0%
! ACAGATGAAGATTTTCACAA+TGG - chr5.1:19041409-19041428 MS.gene72910:CDS 30.0%
! AGTCTTATACGTGCTTTAAT+AGG - chr5.1:19044506-19044525 MS.gene72910:intron 30.0%
! ATGTTTTGTCCTTCAAGAAA+AGG + chr5.1:19045601-19045620 None:intergenic 30.0%
! CGAAAAGTGCAAAACTTATA+CGG - chr5.1:19042669-19042688 MS.gene72910:CDS 30.0%
! TCGTATATTTCTTTTATCGC+TGG + chr5.1:19044008-19044027 None:intergenic 30.0%
! TGTTTTGTCCTTCAAGAAAA+GGG + chr5.1:19045600-19045619 None:intergenic 30.0%
! TTTTCACATCCACAAATATG+AGG - chr5.1:19043386-19043405 MS.gene72910:intron 30.0%
!! TGTTGGTCTTCATAGATAAA+AGG + chr5.1:19041300-19041319 None:intergenic 30.0%
!!! CATTATGCTTTTTTTCTCTG+TGG - chr5.1:19045760-19045779 MS.gene72910:CDS 30.0%
!!! GATGTTTTGAGTTGTTTTTC+CGG + chr5.1:19042726-19042745 None:intergenic 30.0%
!!! GATTTTCAAGTCTACAGTAT+TGG - chr5.1:19045919-19045938 MS.gene72910:CDS 30.0%
!!! TACCATACACTTTGCTATTT+TGG + chr5.1:19041245-19041264 None:intergenic 30.0%
!!! TTTTGAGTTCTTGAACTTCT+TGG - chr5.1:19044587-19044606 MS.gene72910:intron 30.0%
AACAAATGAAAACGTCAACG+GGG + chr5.1:19042108-19042127 None:intergenic 35.0%
AACATGAAGAATACTCCTTC+CGG + chr5.1:19041095-19041114 None:intergenic 35.0%
AACTGGAATTTCACCATTGT+TGG + chr5.1:19041317-19041336 None:intergenic 35.0%
AATGAGAAAAGGGTTAGACT+AGG + chr5.1:19043247-19043266 None:intergenic 35.0%
AATTTCCAGCAAGATGTAAG+AGG + chr5.1:19044352-19044371 None:intergenic 35.0%
ACTGTTGCAGCATATAGAAA+AGG + chr5.1:19041973-19041992 None:intergenic 35.0%
ACTTAAGTGGCAAAGACTTT+AGG + chr5.1:19045727-19045746 None:intergenic 35.0%
ACTTCAATCCTACTCTTCAT+TGG - chr5.1:19045668-19045687 MS.gene72910:CDS 35.0%
AGAGCGAAAAGTAACTTAAG+TGG + chr5.1:19045740-19045759 None:intergenic 35.0%
AGTGAAAGCTGGAGAAAAAT+GGG - chr5.1:19045466-19045485 MS.gene72910:intron 35.0%
ATATACAATCGAGGTGTGTT+TGG + chr5.1:19042944-19042963 None:intergenic 35.0%
ATCAATAGACCATAAGAGGT+CGG + chr5.1:19044198-19044217 None:intergenic 35.0%
ATGAGAAAAGGGTTAGACTA+GGG + chr5.1:19043246-19043265 None:intergenic 35.0%
ATGTTGTTGTGTGGTCTATA+GGG + chr5.1:19043207-19043226 None:intergenic 35.0%
ATTTCCAGCAAGATGTAAGA+GGG + chr5.1:19044351-19044370 None:intergenic 35.0%
CAACAAATGAAAACGTCAAC+GGG + chr5.1:19042109-19042128 None:intergenic 35.0%
CACCAAAATAGCAAAGTGTA+TGG - chr5.1:19041240-19041259 MS.gene72910:CDS 35.0%
CATCTAAGTTGTAGAGAAGT+AGG - chr5.1:19043812-19043831 MS.gene72910:intron 35.0%
CTACTTCTCTACAACTTAGA+TGG + chr5.1:19043814-19043833 None:intergenic 35.0%
CTTGAACTTCTTGGCTATAT+TGG - chr5.1:19044596-19044615 MS.gene72910:intron 35.0%
GAATCAAAGTCAGAATCAGA+TGG - chr5.1:19041618-19041637 MS.gene72910:CDS 35.0%
GTGAAAATGAAAGACAATCG+TGG - chr5.1:19041178-19041197 MS.gene72910:CDS 35.0%
GTTCTTGCTCTTACTATGAT+TGG + chr5.1:19043068-19043087 None:intergenic 35.0%
TACATTGTGGTAGCAACTAA+TGG + chr5.1:19042174-19042193 None:intergenic 35.0%
TAGTGAAAGCTGGAGAAAAA+TGG - chr5.1:19045465-19045484 MS.gene72910:intron 35.0%
TATACAATCGAGGTGTGTTT+GGG + chr5.1:19042943-19042962 None:intergenic 35.0%
TCATCATAGAATTGGAGAGA+GGG + chr5.1:19043985-19044004 None:intergenic 35.0%
TGAAGAAATTGGTGAAGGAA+GGG - chr5.1:19041143-19041162 MS.gene72910:CDS 35.0%
TGACTTTGATTCTGATCTGT+GGG + chr5.1:19041610-19041629 None:intergenic 35.0%
TGCCTATATGATACACACTT+AGG - chr5.1:19045230-19045249 MS.gene72910:intron 35.0%
TGGTAAATGGTGACATATCT+TGG - chr5.1:19041471-19041490 MS.gene72910:CDS 35.0%
TGTAACAAATGCTGTTCTAC+CGG - chr5.1:19042704-19042723 MS.gene72910:CDS 35.0%
TGTAGAGAAGTAGGAATTCA+CGG - chr5.1:19043821-19043840 MS.gene72910:intron 35.0%
TGTATTCACCCTCATATTTG+TGG + chr5.1:19043398-19043417 None:intergenic 35.0%
TTGGAAGACAACAAAGAAGA+CGG + chr5.1:19042067-19042086 None:intergenic 35.0%
! AATCCATATTTGTTGCCACT+TGG + chr5.1:19041687-19041706 None:intergenic 35.0%
! ATCCATATTTGTTGCCACTT+GGG + chr5.1:19041686-19041705 None:intergenic 35.0%
! GAACAGCATTTGTTACAATG+AGG + chr5.1:19042701-19042720 None:intergenic 35.0%
! GTTGGAAGACTTCTTTTCTA+CGG + chr5.1:19044259-19044278 None:intergenic 35.0%
! GTTTTGTCCTTCAAGAAAAG+GGG + chr5.1:19045599-19045618 None:intergenic 35.0%
! TAAATATATCCAACCGGTTC+AGG + chr5.1:19042581-19042600 None:intergenic 35.0%
! TACTAAAGTGTTTCCTGAAC+CGG - chr5.1:19042565-19042584 MS.gene72910:intron 35.0%
! TCTCTCTTTCTTCTTTAGGA+AGG - chr5.1:19043304-19043323 MS.gene72910:intron 35.0%
! TCTTCTTTAGGAAGGATCTT+TGG - chr5.1:19043312-19043331 MS.gene72910:intron 35.0%
! TGTTAAACCTTTGGTGGTTA+GGG + chr5.1:19043136-19043155 None:intergenic 35.0%
! TTGATTTTCTTCTCACTCTC+CGG + chr5.1:19042905-19042924 None:intergenic 35.0%
!! GAAGGTACTAGAACAATAAC+TGG + chr5.1:19045878-19045897 None:intergenic 35.0%
!!! ATTTTTGGCTTCCTTACACT+TGG + chr5.1:19045396-19045415 None:intergenic 35.0%
!!! TTTTTGGCTTCCTTACACTT+GGG + chr5.1:19045395-19045414 None:intergenic 35.0%
AAAGGTCCTGATCAATAACC+TGG + chr5.1:19041282-19041301 None:intergenic 40.0%
AAATGGATGATTGCAGGAAG+TGG - chr5.1:19045355-19045374 MS.gene72910:CDS 40.0%
AAATGGGCAAAAGATACAGC+TGG - chr5.1:19045482-19045501 MS.gene72910:intron 40.0%
AATACCCTCTTACATCTTGC+TGG - chr5.1:19044344-19044363 MS.gene72910:CDS 40.0%
AATACTTGATATGTTGGGGC+CGG + chr5.1:19043855-19043874 None:intergenic 40.0%
AGATCTACGGTGAAGATCAA+AGG + chr5.1:19044384-19044403 None:intergenic 40.0%
AGCACAAAAGGAAACCATCA+TGG + chr5.1:19045789-19045808 None:intergenic 40.0%
AGGATCTTGTCCATTTGAGT+AGG + chr5.1:19044710-19044729 None:intergenic 40.0%
ATCGCTGGTCATCATAGAAT+TGG + chr5.1:19043993-19044012 None:intergenic 40.0%
ATGTTGAAAGCAGCTAAGCA+TGG - chr5.1:19044134-19044153 MS.gene72910:CDS 40.0%
ATTCCGCAAGTACATCTCTT+AGG - chr5.1:19043357-19043376 MS.gene72910:intron 40.0%
ATTGTGGTAGCAACTAATGG+TGG + chr5.1:19042171-19042190 None:intergenic 40.0%
CAAAACATCTTCCACAGGTA+CGG - chr5.1:19042737-19042756 MS.gene72910:CDS 40.0%
CAACAACATGCCAAACTAAG+AGG - chr5.1:19043218-19043237 MS.gene72910:intron 40.0%
CAACTCAAAACATCTTCCAC+AGG - chr5.1:19042732-19042751 MS.gene72910:CDS 40.0%
CACTTGCATCATGTATGAGT+TGG + chr5.1:19044277-19044296 None:intergenic 40.0%
CATAGCAAGTGAAGCACAAA+AGG + chr5.1:19045801-19045820 None:intergenic 40.0%
CATGTTGTTGTGTGGTCTAT+AGG + chr5.1:19043208-19043227 None:intergenic 40.0%
CGCAAGAGATATGTATATGC+TGG - chr5.1:19042341-19042360 MS.gene72910:intron 40.0%
CTAACCACCAAAGGTTTAAC+AGG - chr5.1:19043135-19043154 MS.gene72910:intron 40.0%
CTACCTAAGAGATGTACTTG+CGG + chr5.1:19043363-19043382 None:intergenic 40.0%
CTGACTTTGATTCTGATCTG+TGG + chr5.1:19041611-19041630 None:intergenic 40.0%
CTTTCGGTAAATATCTCACG+AGG + chr5.1:19045434-19045453 None:intergenic 40.0%
GAAGAGTAGGATTGAAGTTG+AGG + chr5.1:19045666-19045685 None:intergenic 40.0%
GATATTTACCGAAAGCCACA+AGG - chr5.1:19045439-19045458 MS.gene72910:CDS 40.0%
GATGATGAACGCAACTACAT+TGG + chr5.1:19042086-19042105 None:intergenic 40.0%
GTAGAGAAGTAGGAATTCAC+GGG - chr5.1:19043822-19043841 MS.gene72910:intron 40.0%
GTCAGCTAAACCTACTCAAA+TGG - chr5.1:19044697-19044716 MS.gene72910:intron 40.0%
GTCATCATAGAATTGGAGAG+AGG + chr5.1:19043986-19044005 None:intergenic 40.0%
GTGAAGAAATTGGTGAAGGA+AGG - chr5.1:19041142-19041161 MS.gene72910:CDS 40.0%
TAAGGAATCTGAACTGAGAG+AGG - chr5.1:19044094-19044113 MS.gene72910:CDS 40.0%
TAGTTTGGCATGTTGTTGTG+TGG + chr5.1:19043216-19043235 None:intergenic 40.0%
TATAGAAGATCTGCTTGCAG+TGG - chr5.1:19044532-19044551 MS.gene72910:intron 40.0%
TCAATAGACCATAAGAGGTC+GGG + chr5.1:19044197-19044216 None:intergenic 40.0%
TGTATGGTAGAAAAGAAGGG+AGG - chr5.1:19041256-19041275 MS.gene72910:CDS 40.0%
TGTCTTGATTGTTTCCACCA+GGG + chr5.1:19045568-19045587 None:intergenic 40.0%
TGTTGCCAATTATGTCCTTG+CGG - chr5.1:19041860-19041879 MS.gene72910:intron 40.0%
TTCCCAAGTGGCAACAAATA+TGG - chr5.1:19041681-19041700 MS.gene72910:intron 40.0%
TTGTTTAAACGGTGAGTGCA+TGG + chr5.1:19042021-19042040 None:intergenic 40.0%
TTTGATCTTCACCGTAGATC+TGG - chr5.1:19044383-19044402 MS.gene72910:intron 40.0%
! AATACACACTGTGTTGCTCT+TGG - chr5.1:19043412-19043431 MS.gene72910:intron 40.0%
! ATGTTTTCCACGTCTTCATC+CGG - chr5.1:19041073-19041092 MS.gene72910:CDS 40.0%
! CTGTTAAACCTTTGGTGGTT+AGG + chr5.1:19043137-19043156 None:intergenic 40.0%
! CTTTAGGAAGGATCTTTGGA+TGG - chr5.1:19043316-19043335 MS.gene72910:intron 40.0%
! GCAAAATGGATTTCAGTAGC+TGG - chr5.1:19045303-19045322 MS.gene72910:CDS 40.0%
! TCTCGCTCTCTTCAGATTTT+TGG + chr5.1:19042968-19042987 None:intergenic 40.0%
! TGGAATTCCCCTTTTCTTGA+AGG - chr5.1:19045589-19045608 MS.gene72910:CDS 40.0%
!! GGAATTCACGGGTTTTAATC+CGG - chr5.1:19043833-19043852 MS.gene72910:intron 40.0%
!! TCACTTGCTATGCTCTTGAA+GGG - chr5.1:19045809-19045828 MS.gene72910:CDS 40.0%
!! TTCACTTGCTATGCTCTTGA+AGG - chr5.1:19045808-19045827 MS.gene72910:CDS 40.0%
!!! TTTTGGCTTCCTTACACTTG+GGG + chr5.1:19045394-19045413 None:intergenic 40.0%
AAATGGACAAGATCCTCCCT+TGG - chr5.1:19044714-19044733 MS.gene72910:intron 45.0%
AACTTCTCCCTAACCACCAA+AGG - chr5.1:19043126-19043145 MS.gene72910:intron 45.0%
AAGTCAATACCAGCAGCCAA+GGG + chr5.1:19044733-19044752 None:intergenic 45.0%
AGTAAGAGCAAGAACTCGCA+TGG - chr5.1:19043073-19043092 MS.gene72910:intron 45.0%
AGTTCTTCTTGCTGCAGCTA+AGG - chr5.1:19041333-19041352 MS.gene72910:CDS 45.0%
ATGAAGAGTCGCAACTGTGA+AGG + chr5.1:19045896-19045915 None:intergenic 45.0%
ATGCGTGCTAATGCGTACAA+GGG + chr5.1:19041651-19041670 None:intergenic 45.0%
ATGCTCTTGAAGGGACATGA+AGG - chr5.1:19045818-19045837 MS.gene72910:CDS 45.0%
CAAACACCATCAAGACCGAT+AGG - chr5.1:19042861-19042880 MS.gene72910:CDS 45.0%
CAACTCAGCAACAAGAGCTA+GGG + chr5.1:19041212-19041231 None:intergenic 45.0%
CAATAGACCATAAGAGGTCG+GGG + chr5.1:19044196-19044215 None:intergenic 45.0%
CGCAAGTACATCTCTTAGGT+AGG - chr5.1:19043361-19043380 MS.gene72910:intron 45.0%
CTACGGTGAAGATCAAAGGA+GGG + chr5.1:19044380-19044399 None:intergenic 45.0%
CTGTCTTGATTGTTTCCACC+AGG + chr5.1:19045569-19045588 None:intergenic 45.0%
GAAAGCTGCAGCAAACATGA+TGG + chr5.1:19045540-19045559 None:intergenic 45.0%
GACAACAAAGAAGACGGTGA+CGG + chr5.1:19042061-19042080 None:intergenic 45.0%
GATTCTGATCTGTGGGTAAG+TGG + chr5.1:19041603-19041622 None:intergenic 45.0%
GGTGGAAACAATCAAGACAG+TGG - chr5.1:19045569-19045588 MS.gene72910:CDS 45.0%
GTTCTTCTTGCTGCAGCTAA+GGG - chr5.1:19041334-19041353 MS.gene72910:CDS 45.0%
TCAACTCAGCAACAAGAGCT+AGG + chr5.1:19041213-19041232 None:intergenic 45.0%
TCTACGGTGAAGATCAAAGG+AGG + chr5.1:19044381-19044400 None:intergenic 45.0%
TCTCTTTGCATTTGGAGAGC+AGG + chr5.1:19044410-19044429 None:intergenic 45.0%
TGACGCTCCTGTTAAACCTT+TGG + chr5.1:19043145-19043164 None:intergenic 45.0%
TGTGGGTAAGTGGCAATTGT+GGG + chr5.1:19041593-19041612 None:intergenic 45.0%
TGTGGTCTATAGGGATCTCT+CGG + chr5.1:19043198-19043217 None:intergenic 45.0%
TTAGCTGCAGCAAGAAGAAC+TGG + chr5.1:19041334-19041353 None:intergenic 45.0%
TTTCTCTGTGGTGTCCATGA+TGG - chr5.1:19045772-19045791 MS.gene72910:CDS 45.0%
! AAAGTGTTTCCTGAACCGGT+TGG - chr5.1:19042569-19042588 MS.gene72910:intron 45.0%
!! CTGAAACTTGCTAGCATGAG+CGG + chr5.1:19043766-19043785 None:intergenic 45.0%
!! TGAAACTTGCTAGCATGAGC+GGG + chr5.1:19043765-19043784 None:intergenic 45.0%
!! TATTCAAATATATTATATTA+GGG - chr5.1:19042283-19042302 MS.gene72910:intron 5.0%
!! TTATTCAAATATATTATATT+AGG - chr5.1:19042282-19042301 MS.gene72910:intron 5.0%
!!! GTTTTTTTTTTTTTTATTAT+CGG - chr5.1:19041741-19041760 MS.gene72910:intron 5.0%
AACATGCATGTCGTGGTCTG+TGG + chr5.1:19043021-19043040 None:intergenic 50.0%
AACGGCGCGTTATGCAGAAA+GGG - chr5.1:19045697-19045716 MS.gene72910:CDS 50.0%
AAGCTAACCCCGACCTCTTA+TGG - chr5.1:19044186-19044205 MS.gene72910:intron 50.0%
AATCGTGCACCCCAAGTGTA+AGG - chr5.1:19045382-19045401 MS.gene72910:CDS 50.0%
AGTTGTGCAATCCGTACCTG+TGG + chr5.1:19042751-19042770 None:intergenic 50.0%
CAAGTCAATACCAGCAGCCA+AGG + chr5.1:19044734-19044753 None:intergenic 50.0%
CACAAGGAGCTAGTGAAAGC+TGG - chr5.1:19045455-19045474 MS.gene72910:intron 50.0%
CACTAGCTCCTTGTGGCTTT+CGG + chr5.1:19045450-19045469 None:intergenic 50.0%
CAGCTTTCACTAGCTCCTTG+TGG + chr5.1:19045457-19045476 None:intergenic 50.0%
CATGCGTGCTAATGCGTACA+AGG + chr5.1:19041652-19041671 None:intergenic 50.0%
CCAAACGCATGACTCTTGCA+CGG - chr5.1:19041915-19041934 MS.gene72910:intron 50.0%
CGCTCCTGTTAAACCTTTGG+TGG + chr5.1:19043142-19043161 None:intergenic 50.0%
CTGTGGGTAAGTGGCAATTG+TGG + chr5.1:19041594-19041613 None:intergenic 50.0%
CTTCATGTTGCAGCGATAGC+TGG - chr5.1:19041106-19041125 MS.gene72910:CDS 50.0%
GAATGTCTGCCAGGACCTAT+CGG + chr5.1:19042879-19042898 None:intergenic 50.0%
GACTAGGGCTCCTCTTAGTT+TGG + chr5.1:19043231-19043250 None:intergenic 50.0%
GTGAGAGAGAGACTCACCAT+AGG - chr5.1:19042990-19043009 MS.gene72910:CDS 50.0%
GTGGCAATTGTGGGAATCGT+TGG + chr5.1:19041584-19041603 None:intergenic 50.0%
GTGGTCTGTGGTAGTACCTA+TGG + chr5.1:19043009-19043028 None:intergenic 50.0%
TAACGGCGCGTTATGCAGAA+AGG - chr5.1:19045696-19045715 MS.gene72910:CDS 50.0%
TGCATGTTCCAGCACATGAG+AGG - chr5.1:19043033-19043052 MS.gene72910:intron 50.0%
TTGAGCTGCGACAATGGCAA+AGG + chr5.1:19042147-19042166 None:intergenic 50.0%
TTTCCACGTCTTCATCCGGA+AGG - chr5.1:19041077-19041096 MS.gene72910:CDS 50.0%
! GCTCTTGTTGCTGAGTTGAC+TGG - chr5.1:19041214-19041233 MS.gene72910:CDS 50.0%
! TTGCCACTTGGGAACACAGA+CGG + chr5.1:19041675-19041694 None:intergenic 50.0%
AATGGCTATGGTGCGTGACC+TGG - chr5.1:19043697-19043716 MS.gene72910:intron 55.0%
ACACAACATGCGCGATGACC+AGG + chr5.1:19043718-19043737 None:intergenic 55.0%
ACTCCTTCCGGATGAAGACG+TGG + chr5.1:19041083-19041102 None:intergenic 55.0%
ATGCCGTCTGTGTTCCCAAG+TGG - chr5.1:19041669-19041688 MS.gene72910:intron 55.0%
ATGTGCAGCCTCTCATGTGC+TGG + chr5.1:19043044-19043063 None:intergenic 55.0%
CCAGGACCTATCGGTCTTGA+TGG + chr5.1:19042870-19042889 None:intergenic 55.0%
CCATCAAGACCGATAGGTCC+TGG - chr5.1:19042867-19042886 MS.gene72910:CDS 55.0%
CCGTGCAAGAGTCATGCGTT+TGG + chr5.1:19041918-19041937 None:intergenic 55.0%
CGCGACCGCAAGGACATAAT+TGG + chr5.1:19041868-19041887 None:intergenic 55.0%
CGCGAGCACGTAGTGCTAAA+TGG - chr5.1:19041884-19041903 MS.gene72910:intron 55.0%
GGAGAGCAGGACCAGATCTA+CGG + chr5.1:19044397-19044416 None:intergenic 55.0%
GGGAGGCCAGGTTATTGATC+AGG - chr5.1:19041273-19041292 MS.gene72910:CDS 55.0%
GGTAGAAAAGAAGGGAGGCC+AGG - chr5.1:19041261-19041280 MS.gene72910:CDS 55.0%
GGTGGTTTGAGCTGCGACAA+TGG + chr5.1:19042153-19042172 None:intergenic 55.0%
GTCCTGGCAGACATTCAGAC+CGG - chr5.1:19042883-19042902 MS.gene72910:CDS 55.0%
GTGCTGGAACATGCATGTCG+TGG + chr5.1:19043028-19043047 None:intergenic 55.0%
TCAATACCAGCAGCCAAGGG+AGG + chr5.1:19044730-19044749 None:intergenic 55.0%
CAAGATCCTCCCTTGGCTGC+TGG - chr5.1:19044721-19044740 MS.gene72910:intron 60.0%
CTCCGGTCTGAATGTCTGCC+AGG + chr5.1:19042888-19042907 None:intergenic 60.0%
GCAGCTTTCACTGTCCCTGG+TGG - chr5.1:19045551-19045570 MS.gene72910:CDS 60.0%
GCTGCAGCTTTCACTGTCCC+TGG - chr5.1:19045548-19045567 MS.gene72910:intron 60.0%
ACTACGTGCTCGCGACCGCA+AGG + chr5.1:19041878-19041897 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 19041073 19045949 19041073 ID=MS.gene72910
chr5.1 mRNA 19041073 19045949 19041073 ID=MS.gene72910.t1;Parent=MS.gene72910
chr5.1 exon 19045550 19045949 19045550 ID=MS.gene72910.t1.exon1;Parent=MS.gene72910.t1
chr5.1 CDS 19045550 19045949 19045550 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19045293 19045460 19045293 ID=MS.gene72910.t1.exon2;Parent=MS.gene72910.t1
chr5.1 CDS 19045293 19045460 19045293 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19044269 19044364 19044269 ID=MS.gene72910.t1.exon3;Parent=MS.gene72910.t1
chr5.1 CDS 19044269 19044364 19044269 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19044093 19044164 19044093 ID=MS.gene72910.t1.exon4;Parent=MS.gene72910.t1
chr5.1 CDS 19044093 19044164 19044093 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19043644 19043700 19043644 ID=MS.gene72910.t1.exon5;Parent=MS.gene72910.t1
chr5.1 CDS 19043644 19043700 19043644 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19043452 19043511 19043452 ID=MS.gene72910.t1.exon6;Parent=MS.gene72910.t1
chr5.1 CDS 19043452 19043511 19043452 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19042577 19043013 19042577 ID=MS.gene72910.t1.exon7;Parent=MS.gene72910.t1
chr5.1 CDS 19042577 19043013 19042577 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
chr5.1 exon 19041073 19041651 19041073 ID=MS.gene72910.t1.exon8;Parent=MS.gene72910.t1
chr5.1 CDS 19041073 19041651 19041073 ID=cds.MS.gene72910.t1;Parent=MS.gene72910.t1
Gene Sequence

>MS.gene72910

ATGTTTTCCACGTCTTCATCCGGAAGGAGTATTCTTCATGTTGCAGCGATAGCTGGTCACGAAGAAATTGTGAAGAAATTGGTGAAGGAAGGGAAAGATAAGTTAGTGAAAATGAAAGACAATCGTGGATACACAGCCCTAGCTCTTGTTGCTGAGTTGACTGGAAACACCAAAATAGCAAAGTGTATGGTAGAAAAGAAGGGAGGCCAGGTTATTGATCAGGACCTTTTATCTATGAAGACCAACAATGGTGAAATTCCAGTTCTTCTTGCTGCAGCTAAGGGACACAAAGAAATGACTAGTTATCTTGTTCCTAAAACTCATTTGGAAGAATTAACAGATGAAGATTTTCACAATGGTGTTTTGCTTCTAACGCGTTGTATCAATGCAGAAATATTTGGTAAATGGTGACATATCTTGGATTAAATTAAAGTTATGTTAATGTTAATGGATTTTTTTTTACGGAATGCTAATATGTTGTCATACTAGATGTGGCTTTGAGTTTACTCCAACGATTCCCACAATTGCCACTTACCCACAGATCAGAATCAAAGTCAGAATCAGATGGCGTGCAACCCTTGTACGCATTAGCACGCATGCCGTCTGTGTTCCCAAGTGGCAACAAATATGGATTCATAAGAAGATTTCTTTACAAAAGTAAGTCAATAGTTTTTTTTTTTTTTATTATCGGTGTATTGACTACTACCATAAATGCATAATAAAAAATATTGACAACTAAAACCATTTGTTGATTACTTAAAAAAAAAAAATATTTGTTGATTGACAATGTTGCCAATTATGTCCTTGCGGTCGCGAGCACGTAGTGCTAAATGGCACGAGAACCAAACGCATGACTCTTGCACGGACGCTTTTTAAAGCTTAACCCACACCTAATATCCTTTTCTATATGCTGCAACAGTTGCCACACTTTTTTAATCATGACTGCCATGCACTCACCGTTTAAACAACTCTTTGTTGTCTCTTGCCGTCACCGTCTTCTTTGTTGTCTTCCAATGTAGTTGCGTTCATCATCCCCGTTGACGTTTTCATTTGTTGTTGTCTTCATCGTCACCTTTGCCATTGTCGCAGCTCAAACCACCATTAGTTGCTACCACAATGTAGTTATAGTTATTGTCATGGTCATATCACTGCAGTCCAAATTAAAGCAGTGTTTTCTTCACTATTATAAAGTATATAAACCATCAGAGTTTATTCAAATATATTATATTAGGGGATTGATATGGAGTAGCAATATACTATCACAACTTCGCAAGAGATATGTATATGCTGGTACAACACTAGCAGTCTAGCACAACACTATCATCAAATAAGAGAGAGAAACATGTTGTCGTGTAACATGCACGAAAAATTTTGTCGCGCATTTTATCATTATCCCTATATTTTATCACTTTTGTATATTTGGTTGACTATTATTTTAGAGGGAATATTTGTTTGACTATTATTATTACATCAATTTATGTATGAAAAATTATACTAAAGTGTTTCCTGAACCGGTTGGATATATTTAATATATATATATATTTAAAGTTCATGGAGAATCATGACTAATCCATTTTGTTTTCAGTTTTGAGATTACGAAAAGTGCAAAACTTATACGGTATGTGCCTCATTGTAACAAATGCTGTTCTACCGGAAAAACAACTCAAAACATCTTCCACAGGTACGGATTGCACAACTTATCTAAGTTGATGACAAATAATTTATTAAATTTATGTTTTTTTAATTGCAAAGATAATGTTATAAATAGATAAAGGATAAGTATAGATACAAACACCATCAAGACCGATAGGTCCTGGCAGACATTCAGACCGGAGAGTGAGAAGAAAATCAAAACAGGTAACAAGAACCCAAACACACCTCGATTGTATATACCAAAAATCTGAAGAGAGCGAGAGAGTGAGAGAGAGACTCACCATAGGTACTACCACAGACCACGACATGCATGTTCCAGCACATGAGAGGCTGCACATCCCAATCATAGTAAGAGCAAGAACTCGCATGGCATTTAGCCAAGAATCATTTTCAAGTAAAAAACTTCTCCCTAACCACCAAAGGTTTAACAGGAGCGTCAACTCAAGCAAATATTGAATCATTGCGAGAGCCGAGAGATCCCTATAGACCACACAACAACATGCCAAACTAAGAGGAGCCCTAGTCTAACCCTTTTCTCATTTTCTATATATACTTGCATGAAATTTTCAAAATCTTATTCTCTCTTTCTTCTTTAGGAAGGATCTTTGGATGGATGTTCGATATTTTGAAAATTCCGCAAGTACATCTCTTAGGTAGGTATTTTCACATCCACAAATATGAGGGTGAATACACACTGTGTTGCTCTTGGTTCATTCATAGATGACGAAGTCTTTATATATATTGATCATATCTGTCTTTTTCAATTTTGATGACTTCTTTTTCAGGTCGAATACTTATTCATATTCACATGTTATTTCAGGATTTAGTAATATTAAAGTTGTCTGGTAAGTCAGCCGAAATTGAAAACATTTTTTTCCTTTATTTCTTATGAGGTTATTGGAAATTATTCATATTGAAAAATTATTAAAGTTAGTTAGTATAAGAATAGTATAGTGATGTGTTGTCTTAATAATGGCTATGGTGCGTGACCTGGTCATCGCGCATGTTGTGTTAAGACAACACATCAAGTATTTTTCCCGCTCATGCTAGCAAGTTTCAGATGCAACAAAAATTAAGTGCTTTTACCATCTAAGTTGTAGAGAAGTAGGAATTCACGGGTTTTAATCCGGCCCCAACATATCAAGTATTTTGTAGTCTTTTATCATTTAAGTTGTACTAACGGGAACAAACTAGTCTATATTTACTTTGGTGTTGTTGTATTAATTAAAATATATTGAGTTGATCACTAATTAATTCCCTCTCTCCAATTCTATGATGACCAGCGATAAAAGAAATATACGATCAGAAAATGACGCATCGTCTAGTGCTTGAAATATTGAATTGCTTGTCCCAAAAAATTCAAGAATTTAAGGAATCTGAACTGAGAGAGGCTTCAGCATACGATGCAATGTTGAAAGCAGCTAAGCATGGAAATATTGAGTTCATAGTTTCAATGAGAAAAGCTAACCCCGACCTCTTATGGTCTATTGATAAAAATAAAAGAGGCATATTTTCGCATGCAATTTTGAACCGTAGAAAAGAAGTCTTCCAACTCATACATGATGCAAGTGTAAATGGACGAAAAGAAATTGTTAGATGCCGTGTAGATGCATTTGATAATACCCTCTTACATCTTGCTGGAAATTTAGGGCCCTCCTTTGATCTTCACCGTAGATCTGGTCCTGCTCTCCAAATGCAAAGAGAGATTTTATGGTTTAAGGTAAGTAATACATGTTTCATAGTATCTATTTTCACATGCACACAAAAATAGGGTAGTTTGAGTCTTATACGTGCTTTAATAGGTGATATAGAAGATCTGCTTGCAGTGGAGTATCTATGACCTTATTTTAGAGTTTCAAACTTTTGAGTTCTTGAACTTCTTGGCTATATTGGTGCAAAATTAATATCATAAGGTTCAAAATGCAAAATAAATAGGAGTATACATGCTTTTTTATTTTTTAGTTCACAGGGGTCAGCTAAACCTACTCAAATGGACAAGATCCTCCCTTGGCTGCTGGTATTGACTTGTTTGAATTTATCTATTTATACAATTCTTTGTGAGAAAGTTTGAGAGAGCTTGTAGAAACAGTTTATGACATGTGTCTTTTTTTTATTACAACGGCGTTCATGACACGTGTCTATAAATTTCTTATGAAAACAGTTTATTGTGAAAACCGTTTGACTTGATTTTATCTTGTATTATAGAAATATGATATGTTTAGATTGACTTATTTTAGCTTATTTATTGACATAAGTAGTGAGACTATTTGAGAAAATAAATATAAACAACCAATGAAAATATCACAAGCCTTTTTCACCTTATTTCTTTAAGCTCTCTAGTTTAACCTATGAAAATAGGTTATAACTTAAACGAAAACAATTTAACTTTATTTTATCTTTTGTTATAAAAATTGTTTATACATAAACACTTATCATGTTAAGCGTTTATGTTATTAATTGCAAAATAAATTGTTTATATAGACATGACCATAGTTTATACAAAGTGCCTATATGATACACACTTAGGTTATAAACGTTTAATTAAGCTATTTATCCAAACATATATACTTTATTATAGCAAAATGGATTTCAGTAGCTGGCTGCATCATAAAACTAACTATATTTTATGAAATGGATGATTGCAGGAAGTGGAGAAAATCGTGCACCCCAAGTGTAAGGAAGCCAAAAATGTAGAAGATAAGAAGCCTCGTGAGATATTTACCGAAAGCCACAAGGAGCTAGTGAAAGCTGGAGAAAAATGGGCAAAAGATACAGCTGGTTCATTTACTCTTGTTGCTACTCTCATCACAACCATCATGTTTGCTGCAGCTTTCACTGTCCCTGGTGGAAACAATCAAGACAGTGGAATTCCCCTTTTCTTGAAGGACAAAACATTTAATGTGTTTATAATAGCAGATGCAATATCTCTTTTTACTTCCTCAACTTCAATCCTACTCTTCATTGGAATTCTAACGGCGCGTTATGCAGAAAGGGATTTCCTAAAGTCTTTGCCACTTAAGTTACTTTTCGCTCTCATTATGCTTTTTTTCTCTGTGGTGTCCATGATGGTTTCCTTTTGTGCTTCACTTGCTATGCTCTTGAAGGGACATGAAGGAGTCATAATAACAGCTATGTCGTTCGCAAGTATTCCAGTTATTGTTCTAGTACCTTCACAGTTGCGACTCTTCATTGAGATTTTCAAGTCTACAGTATTGGCCAAATGA
Protein sequence

>MS.gene72910.t1

MFSTSSSGRSILHVAAIAGHEEIVKKLVKEGKDKLVKMKDNRGYTALALVAELTGNTKIAKCMVEKKGGQVIDQDLLSMKTNNGEIPVLLAAAKGHKEMTSYLVPKTHLEELTDEDFHNGVLLLTRCINAEIFDVALSLLQRFPQLPLTHRSESKSESDGVQPLYALARMPSVFPSGNKYGFIRRFLYKILRLRKVQNLYGMCLIVTNAVLPEKQLKTSSTDTNTIKTDRSWQTFRPESEKKIKTGRIFGWMFDILKIPQVHLLGRILIHIHMLFQDLVILKLSAIKEIYDQKMTHRLVLEILNCLSQKIQEFKESELREASAYDAMLKAAKHGNIEFIVSMRKANPDLLWSIDKNKRGIFSHAILNRRKEVFQLIHDASVNGRKEIVRCRVDAFDNTLLHLAGNLGPSFDLHRRSGPALQMQREILWFKEVEKIVHPKCKEAKNVEDKKPREIFTESHKELVKAGEKWAKDTAGSFTLVATLITTIMFAAAFTVPGGNNQDSGIPLFLKDKTFNVFIIADAISLFTSSTSILLFIGILTARYAERDFLKSLPLKLLFALIMLFFSVVSMMVSFCASLAMLLKGHEGVIITAMSFASIPVIVLVPSQLRLFIEIFKSTVLAK