Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73435.t1 | XP_013470128.1 | 94.2 | 344 | 20 | 0 | 1 | 344 | 1 | 344 | 5.70E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73435.t1 | Q9C9F4 | 31.7 | 347 | 169 | 8 | 1 | 339 | 10 | 296 | 4.5e-37 | 156.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73435.t1 | G8A287 | 94.2 | 344 | 20 | 0 | 1 | 344 | 1 | 344 | 4.1e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene73435 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene73435 | 0.809656 | 1.70E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene73435 | 0.807508 | 4.88E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene73435 | 0.816807 | 4.57E-52 | -1.69E-46 |
| MS.gene055896 | MS.gene73435 | 0.834312 | 3.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73435.t1 | MTR_1g109350 | 94.186 | 344 | 20 | 0 | 1 | 344 | 1 | 344 | 0.0 | 669 |
| MS.gene73435.t1 | MTR_5g069480 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 2.25e-31 | 120 |
| MS.gene73435.t1 | MTR_5g069480 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 3.91e-31 | 122 |
| MS.gene73435.t1 | MTR_3g082630 | 44.860 | 107 | 57 | 1 | 1 | 105 | 1 | 107 | 5.27e-25 | 104 |
| MS.gene73435.t1 | MTR_2g088900 | 46.154 | 104 | 55 | 1 | 1 | 103 | 97 | 200 | 3.83e-23 | 100 |
| MS.gene73435.t1 | MTR_7g108150 | 38.679 | 106 | 63 | 1 | 3 | 106 | 18 | 123 | 2.21e-20 | 91.3 |
| MS.gene73435.t1 | MTR_7g083540 | 33.333 | 117 | 69 | 1 | 1 | 108 | 1 | 117 | 3.11e-17 | 82.4 |
| MS.gene73435.t1 | MTR_1g013450 | 34.146 | 82 | 54 | 0 | 3 | 84 | 4 | 85 | 4.12e-13 | 69.7 |
| MS.gene73435.t1 | MTR_3g105710 | 34.783 | 92 | 57 | 1 | 3 | 91 | 4 | 95 | 5.03e-12 | 66.2 |
| MS.gene73435.t1 | MTR_7g018170 | 37.838 | 74 | 46 | 0 | 3 | 76 | 24 | 97 | 2.93e-11 | 64.3 |
| MS.gene73435.t1 | MTR_4g128930 | 34.146 | 82 | 54 | 0 | 3 | 84 | 20 | 101 | 4.99e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73435.t1 | AT1G68190 | 37.931 | 319 | 130 | 8 | 1 | 311 | 10 | 268 | 5.11e-65 | 209 |
| MS.gene73435.t1 | AT1G68190 | 37.931 | 319 | 130 | 8 | 1 | 311 | 10 | 268 | 5.11e-65 | 209 |
| MS.gene73435.t1 | AT1G68190 | 37.931 | 319 | 130 | 8 | 1 | 311 | 39 | 297 | 1.29e-64 | 209 |
| MS.gene73435.t1 | AT5G48250 | 45.455 | 110 | 55 | 1 | 1 | 105 | 1 | 110 | 1.17e-27 | 111 |
| MS.gene73435.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 8.03e-25 | 103 |
| MS.gene73435.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 8.03e-25 | 103 |
| MS.gene73435.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 8.03e-25 | 103 |
| MS.gene73435.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 8.03e-25 | 103 |
| MS.gene73435.t1 | AT2G33500 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.50e-22 | 97.8 |
| MS.gene73435.t1 | AT2G33500 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.54e-22 | 97.8 |
| MS.gene73435.t1 | AT1G28050 | 38.889 | 108 | 63 | 1 | 5 | 109 | 9 | 116 | 6.32e-22 | 96.3 |
| MS.gene73435.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 1.94e-21 | 94.4 |
| MS.gene73435.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 1.94e-21 | 94.4 |
| MS.gene73435.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 1 | 104 | 2.15e-21 | 94.4 |
| MS.gene73435.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 2.02e-20 | 90.5 |
| MS.gene73435.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 2.72e-20 | 90.5 |
| MS.gene73435.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 3.50e-20 | 88.6 |
| MS.gene73435.t1 | AT4G15250 | 37.500 | 104 | 64 | 1 | 1 | 103 | 1 | 104 | 1.41e-19 | 88.6 |
| MS.gene73435.t1 | AT5G24930 | 40.244 | 82 | 49 | 0 | 3 | 84 | 4 | 85 | 1.57e-14 | 74.3 |
| MS.gene73435.t1 | AT3G02380 | 39.024 | 82 | 50 | 0 | 3 | 84 | 14 | 95 | 2.14e-13 | 70.9 |
| MS.gene73435.t1 | AT5G15840 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 4.19e-13 | 70.1 |
| MS.gene73435.t1 | AT5G15850 | 41.463 | 82 | 48 | 0 | 3 | 84 | 10 | 91 | 6.20e-13 | 69.3 |
| MS.gene73435.t1 | AT5G15840 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 6.68e-13 | 68.6 |
| MS.gene73435.t1 | AT2G24790 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.09e-12 | 68.2 |
| MS.gene73435.t1 | AT2G24790 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.76e-12 | 66.2 |
Find 66 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATGGAGAGTTATTT+TGG | 0.172335 | 1.4:-83722761 | MS.gene73435:CDS |
| CCACCAAACATCACTCTAAT+TGG | 0.186429 | 1.4:+83721949 | None:intergenic |
| ACTATGGGGATTTGAATTTA+AGG | 0.203446 | 1.4:-83723754 | MS.gene73435:CDS |
| CAAAACTATGAGGAACTATT+TGG | 0.211793 | 1.4:-83721985 | MS.gene73435:CDS |
| AGCAGATTGTTGATTTAAAA+AGG | 0.229527 | 1.4:-83722992 | MS.gene73435:CDS |
| CAAATAGTTCCTCATAGTTT+TGG | 0.233633 | 1.4:+83721986 | None:intergenic |
| GATCATTCTACAAAGATAAC+TGG | 0.292316 | 1.4:-83722948 | MS.gene73435:CDS |
| CCATAGTGTTGCAAACTCTT+TGG | 0.316623 | 1.4:+83723770 | None:intergenic |
| CGATCTGTCAAATCTTTCAT+TGG | 0.318044 | 1.4:-83723804 | MS.gene73435:CDS |
| CCAAAGAGTTTGCAACACTA+TGG | 0.332185 | 1.4:-83723770 | MS.gene73435:CDS |
| AGACGTCTCTTATTCTTCAT+TGG | 0.353797 | 1.4:-83721923 | MS.gene73435:CDS |
| AATTGTCCGGCCGGCACCTC+CGG | 0.395024 | 1.4:-83723947 | MS.gene73435:CDS |
| TTTGTCTTCATCTTCAGTTA+TGG | 0.410820 | 1.4:-83722790 | MS.gene73435:CDS |
| AGTTAGACCTCCATTGTACT+TGG | 0.412154 | 1.4:+83721862 | None:intergenic |
| CCAATGGACCTTTGCATCAC+AGG | 0.442091 | 1.4:+83723977 | None:intergenic |
| TGGAATGTTAAGTCAACGTC+AGG | 0.452059 | 1.4:+83722006 | None:intergenic |
| GATCCAATTAGAGTGATGTT+TGG | 0.455146 | 1.4:-83721952 | MS.gene73435:CDS |
| GTCTGGTGACAATCATGATA+AGG | 0.459630 | 1.4:-83723622 | MS.gene73435:CDS |
| TCAGTCACTTCAACGACGTC+TGG | 0.463294 | 1.4:-83723639 | MS.gene73435:CDS |
| CTCTTATTCTTCATTGGAGA+AGG | 0.464404 | 1.4:-83721917 | MS.gene73435:CDS |
| CATTGGGCAAATGAATTGTC+CGG | 0.481757 | 1.4:-83723960 | MS.gene73435:CDS |
| TACCTGACCTAGTTGACTGC+TGG | 0.483505 | 1.4:+83723596 | None:intergenic |
| ACACAAGGGTCCGGAGGTGC+CGG | 0.485126 | 1.4:+83723937 | None:intergenic |
| CAAAGAGTTTGCAACACTAT+GGG | 0.487640 | 1.4:-83723769 | MS.gene73435:CDS |
| TCTGGTGACAATCATGATAA+GGG | 0.492151 | 1.4:-83723621 | MS.gene73435:CDS |
| CTGTGATGCAAAGGTCCATT+GGG | 0.492787 | 1.4:-83723976 | MS.gene73435:CDS |
| CTTAACATTCCAAAACTATG+AGG | 0.496040 | 1.4:-83721995 | MS.gene73435:CDS |
| ATCCAGCAGTCAACTAGGTC+AGG | 0.498273 | 1.4:-83723598 | MS.gene73435:intron |
| GTTATGGACCTTCCCTTGCA+TGG | 0.501977 | 1.4:-83722774 | MS.gene73435:CDS |
| CCTGTGATGCAAAGGTCCAT+TGG | 0.506685 | 1.4:-83723977 | MS.gene73435:CDS |
| TGGGAGAAGACAATTCTATC+GGG | 0.510510 | 1.4:-83722860 | MS.gene73435:CDS |
| CTGGGAGAAGACAATTCTAT+CGG | 0.513285 | 1.4:-83722861 | MS.gene73435:CDS |
| TGCGATCAAAAGCTACATGA+TGG | 0.526346 | 1.4:-83723846 | MS.gene73435:CDS |
| CCAAAATAACTCTCCATGCA+AGG | 0.527678 | 1.4:+83722761 | None:intergenic |
| CCAATTAGAGTGATGTTTGG+TGG | 0.535280 | 1.4:-83721949 | MS.gene73435:CDS |
| TCTTGCGTATGTTCAGTGCT+TGG | 0.538169 | 1.4:-83723895 | MS.gene73435:CDS |
| ACGAGTTACACACAAGGGTC+CGG | 0.543558 | 1.4:+83723928 | None:intergenic |
| CAAGTTCTTCACATATTCCC+AGG | 0.546412 | 1.4:+83722052 | None:intergenic |
| TGAAAACAGTGTCGATCAGA+AGG | 0.550060 | 1.4:-83723727 | MS.gene73435:CDS |
| GTTTCAGCTAATAGAAGAGA+GGG | 0.550624 | 1.4:-83722970 | MS.gene73435:CDS |
| AACTATGAGGAACTATTTGG+AGG | 0.557150 | 1.4:-83721982 | MS.gene73435:CDS |
| CGGACAATTCATTTGCCCAA+TGG | 0.558043 | 1.4:+83723961 | None:intergenic |
| GTTGCAAACTCTTTGGCAGA+AGG | 0.563765 | 1.4:+83723777 | None:intergenic |
| AAGGGATCCAGCAGTCAACT+AGG | 0.570420 | 1.4:-83723603 | MS.gene73435:CDS |
| GCAGCAAAATATTCAAGACC+TGG | 0.572888 | 1.4:-83722070 | MS.gene73435:CDS |
| TTGTCTATCCTGTGATGCAA+AGG | 0.577128 | 1.4:-83723985 | MS.gene73435:CDS |
| CAAAATAACTCTCCATGCAA+GGG | 0.584415 | 1.4:+83722762 | None:intergenic |
| AAGGGTCCGGAGGTGCCGGC+CGG | 0.586330 | 1.4:+83723941 | None:intergenic |
| AAAGATAACTGGGCTACAAG+TGG | 0.592394 | 1.4:-83722937 | MS.gene73435:CDS |
| GGGCAAATGAATTGTCCGGC+CGG | 0.594066 | 1.4:-83723956 | MS.gene73435:CDS |
| ATAACTCTCCATGCAAGGGA+AGG | 0.600276 | 1.4:+83722766 | None:intergenic |
| CAGCAAAATATTCAAGACCT+GGG | 0.612414 | 1.4:-83722069 | MS.gene73435:CDS |
| ATCATTCTACAAAGATAACT+GGG | 0.615835 | 1.4:-83722947 | MS.gene73435:CDS |
| GCGATCAAAAGCTACATGAT+GGG | 0.617031 | 1.4:-83723845 | MS.gene73435:CDS |
| GGTTTCAGCTAATAGAAGAG+AGG | 0.617889 | 1.4:-83722971 | MS.gene73435:CDS |
| AAAGAGTTTGCAACACTATG+GGG | 0.619686 | 1.4:-83723768 | MS.gene73435:CDS |
| TATTGACAATCCAAGTACAA+TGG | 0.635806 | 1.4:-83721872 | MS.gene73435:CDS |
| TCAGCATTACAGTAAACAAG+TGG | 0.650082 | 1.4:+83724020 | None:intergenic |
| TTGACAGATCGTTTGCGATG+TGG | 0.663808 | 1.4:+83723816 | None:intergenic |
| TGACAATCCAAGTACAATGG+AGG | 0.672160 | 1.4:-83721869 | MS.gene73435:CDS |
| AGTTACACACAAGGGTCCGG+AGG | 0.682408 | 1.4:+83723931 | None:intergenic |
| AAGTTCACTACAAAGTAACC+AGG | 0.683289 | 1.4:-83722730 | MS.gene73435:intron |
| GGGAGAAGACAATTCTATCG+GGG | 0.687222 | 1.4:-83722859 | MS.gene73435:CDS |
| AACAGCACGAGTTACACACA+AGG | 0.692236 | 1.4:+83723922 | None:intergenic |
| TTGCATCACAGGATAGACAA+AGG | 0.703130 | 1.4:+83723988 | None:intergenic |
| ACAGCACGAGTTACACACAA+GGG | 0.726480 | 1.4:+83723923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATTCTTGATT+AGG | + | chr1.4:83723452-83723471 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGATTATTAGT+TGG | + | chr1.4:83723327-83723346 | None:intergenic | 10.0% |
| !! | AAAATCTAAATATATTTCCA+AGG | + | chr1.4:83723284-83723303 | None:intergenic | 15.0% |
| !! | AAATCTAAATATATTTCCAA+GGG | + | chr1.4:83723283-83723302 | None:intergenic | 15.0% |
| !! | ATAAAAATAAATTCATACTC+TGG | - | chr1.4:83723460-83723479 | MS.gene73435:intron | 15.0% |
| !! | ATATTAAAATATACCCTATA+TGG | - | chr1.4:83723365-83723384 | MS.gene73435:intron | 15.0% |
| !! | TATTAAAATATACCCTATAT+GGG | - | chr1.4:83723366-83723385 | MS.gene73435:intron | 15.0% |
| !!! | TTGGAAATATATTTAGATTT+TGG | - | chr1.4:83723283-83723302 | MS.gene73435:intron | 15.0% |
| !! | ATAAGATATCACAGAAATTA+AGG | - | chr1.4:83723489-83723508 | MS.gene73435:intron | 20.0% |
| !!! | ATTGTTTAGTATTGAACATT+AGG | - | chr1.4:83723767-83723786 | MS.gene73435:CDS | 20.0% |
| !!! | TGTGGTTTTGATAATTAATA+TGG | + | chr1.4:83722806-83722825 | None:intergenic | 20.0% |
| ! | AAAGGAAACATACATTATGT+GGG | - | chr1.4:83723251-83723270 | MS.gene73435:intron | 25.0% |
| ! | AAATGCAGAAGAAAAAGTTT+CGG | + | chr1.4:83723096-83723115 | None:intergenic | 25.0% |
| ! | AAGGGTTAAAGTATGTAATA+GGG | + | chr1.4:83723557-83723576 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAAATGTCTGC+TGG | + | chr1.4:83723687-83723706 | None:intergenic | 25.0% |
| ! | ATCATTCTACAAAGATAACT+GGG | - | chr1.4:83722973-83722992 | MS.gene73435:CDS | 25.0% |
| ! | ATCATTTGAATTTCCCATAT+AGG | + | chr1.4:83723382-83723401 | None:intergenic | 25.0% |
| ! | ATTATCTTCATCCAAAATCT+TGG | - | chr1.4:83722604-83722623 | MS.gene73435:intron | 25.0% |
| ! | CTTCCAATTCTGATAATAAA+AGG | - | chr1.4:83723403-83723422 | MS.gene73435:intron | 25.0% |
| ! | GAATGCATTAATCATTTCTT+CGG | + | chr1.4:83722635-83722654 | None:intergenic | 25.0% |
| ! | GATTAATGCATTCTTAACTA+AGG | - | chr1.4:83722642-83722661 | MS.gene73435:intron | 25.0% |
| ! | GTACTTTAACTAACACTTTA+AGG | + | chr1.4:83722709-83722728 | None:intergenic | 25.0% |
| ! | TATAGATTTCATCAGTGATA+AGG | + | chr1.4:83722375-83722394 | None:intergenic | 25.0% |
| ! | TCATTTGAATTTCCCATATA+GGG | + | chr1.4:83723381-83723400 | None:intergenic | 25.0% |
| ! | TTATCTTCATCCAAAATCTT+GGG | - | chr1.4:83722605-83722624 | MS.gene73435:intron | 25.0% |
| ! | TTTACCTTCTCATAAATGAT+TGG | - | chr1.4:83722436-83722455 | MS.gene73435:intron | 25.0% |
| !! | CTTTTATTATCAGAATTGGA+AGG | + | chr1.4:83723405-83723424 | None:intergenic | 25.0% |
| !! | GTTCCTTTTATTATCAGAAT+TGG | + | chr1.4:83723409-83723428 | None:intergenic | 25.0% |
| !!! | AGCAGATTGTTGATTTAAAA+AGG | - | chr1.4:83722928-83722947 | MS.gene73435:CDS | 25.0% |
| !!! | TTTAGATTTTGGTGTAGAAT+AGG | - | chr1.4:83723294-83723313 | MS.gene73435:intron | 25.0% |
| AAGGAAACATACATTATGTG+GGG | - | chr1.4:83723252-83723271 | MS.gene73435:intron | 30.0% | |
| AAGGAGTTCGTAACAATTAT+AGG | - | chr1.4:83722661-83722680 | MS.gene73435:intron | 30.0% | |
| AATGCAGAAGAAAAAGTTTC+GGG | + | chr1.4:83723095-83723114 | None:intergenic | 30.0% | |
| ACTATGGGGATTTGAATTTA+AGG | - | chr1.4:83722166-83722185 | MS.gene73435:intron | 30.0% | |
| AGAGGGATTGATCAAAATAA+TGG | + | chr1.4:83723531-83723550 | None:intergenic | 30.0% | |
| AGGGTTAAAGTATGTAATAG+GGG | + | chr1.4:83723556-83723575 | None:intergenic | 30.0% | |
| AGTACCAATCATTTATGAGA+AGG | + | chr1.4:83722443-83722462 | None:intergenic | 30.0% | |
| AGTTCGTAACAATTATAGGA+AGG | - | chr1.4:83722665-83722684 | MS.gene73435:intron | 30.0% | |
| CAAAACTATGAGGAACTATT+TGG | - | chr1.4:83723935-83723954 | MS.gene73435:CDS | 30.0% | |
| CAAGGGTTAAAGTATGTAAT+AGG | + | chr1.4:83723558-83723577 | None:intergenic | 30.0% | |
| CTTAACATTCCAAAACTATG+AGG | - | chr1.4:83723925-83723944 | MS.gene73435:CDS | 30.0% | |
| GAAAGGAAACATACATTATG+TGG | - | chr1.4:83723250-83723269 | MS.gene73435:intron | 30.0% | |
| GATCATTCTACAAAGATAAC+TGG | - | chr1.4:83722972-83722991 | MS.gene73435:CDS | 30.0% | |
| TATCAAAACCACAAGTACAA+TGG | - | chr1.4:83722813-83722832 | MS.gene73435:CDS | 30.0% | |
| TATTGACAATCCAAGTACAA+TGG | - | chr1.4:83724048-83724067 | MS.gene73435:CDS | 30.0% | |
| TGTATGTTTCCTTTCAATTG+TGG | + | chr1.4:83723245-83723264 | None:intergenic | 30.0% | |
| TTTGTCTTCATCTTCAGTTA+TGG | - | chr1.4:83723130-83723149 | MS.gene73435:intron | 30.0% | |
| TTTGTTGATGTTTGCAGTTA+TGG | - | chr1.4:83723828-83723847 | MS.gene73435:CDS | 30.0% | |
| ! | AATGATTCACACTTTTATGC+TGG | - | chr1.4:83722533-83722552 | MS.gene73435:intron | 30.0% |
| ! | CAAATAGTTCCTCATAGTTT+TGG | + | chr1.4:83723937-83723956 | None:intergenic | 30.0% |
| ! | GATTTTGGATGAAGATAATG+TGG | + | chr1.4:83722603-83722622 | None:intergenic | 30.0% |
| ! | GTTTTACTTCTAGTCAAAAG+TGG | - | chr1.4:83723796-83723815 | MS.gene73435:CDS | 30.0% |
| ! | TATTTTGCTACTAATCTGCT+GGG | - | chr1.4:83723041-83723060 | MS.gene73435:intron | 30.0% |
| ! | TGTGAATCATTTTCTAACTC+TGG | + | chr1.4:83722524-83722543 | None:intergenic | 30.0% |
| !! | AAGTACGATGATTCTTGTTT+TGG | - | chr1.4:83722723-83722742 | MS.gene73435:intron | 30.0% |
| !!! | GATTCTTGTTTTGGTTTCTA+AGG | - | chr1.4:83722732-83722751 | MS.gene73435:CDS | 30.0% |
| AAAGAGTTTGCAACACTATG+GGG | - | chr1.4:83722152-83722171 | MS.gene73435:intron | 35.0% | |
| AACTATGAGGAACTATTTGG+AGG | - | chr1.4:83723938-83723957 | MS.gene73435:CDS | 35.0% | |
| AAGTTCACTACAAAGTAACC+AGG | - | chr1.4:83723190-83723209 | MS.gene73435:intron | 35.0% | |
| AGACGTCTCTTATTCTTCAT+TGG | - | chr1.4:83723997-83724016 | MS.gene73435:CDS | 35.0% | |
| AGATTTCATCAGTGATAAGG+AGG | + | chr1.4:83722372-83722391 | None:intergenic | 35.0% | |
| ATGCAGAAGAAAAAGTTTCG+GGG | + | chr1.4:83723094-83723113 | None:intergenic | 35.0% | |
| CAAAATAACTCTCCATGCAA+GGG | + | chr1.4:83723161-83723180 | None:intergenic | 35.0% | |
| CAAAGAGTTTGCAACACTAT+GGG | - | chr1.4:83722151-83722170 | MS.gene73435:intron | 35.0% | |
| CAGCAAAATATTCAAGACCT+GGG | - | chr1.4:83723851-83723870 | MS.gene73435:CDS | 35.0% | |
| CGATCTGTCAAATCTTTCAT+TGG | - | chr1.4:83722116-83722135 | MS.gene73435:intron | 35.0% | |
| CTCTTATTCTTCATTGGAGA+AGG | - | chr1.4:83724003-83724022 | MS.gene73435:CDS | 35.0% | |
| CTGTTTGATTAATGTGTGCA+AGG | + | chr1.4:83723638-83723657 | None:intergenic | 35.0% | |
| GAAATCATCTCGACAAACAA+GGG | + | chr1.4:83723575-83723594 | None:intergenic | 35.0% | |
| GACTATTGAAGTCAAATGTC+AGG | + | chr1.4:83723604-83723623 | None:intergenic | 35.0% | |
| GATCCAATTAGAGTGATGTT+TGG | - | chr1.4:83723968-83723987 | MS.gene73435:CDS | 35.0% | |
| GGGTTAAAGTATGTAATAGG+GGG | + | chr1.4:83723555-83723574 | None:intergenic | 35.0% | |
| GTTTCAGCTAATAGAAGAGA+GGG | - | chr1.4:83722950-83722969 | MS.gene73435:CDS | 35.0% | |
| TCAGCATTACAGTAAACAAG+TGG | + | chr1.4:83721903-83721922 | None:intergenic | 35.0% | |
| TCTGGTGACAATCATGATAA+GGG | - | chr1.4:83722299-83722318 | MS.gene73435:intron | 35.0% | |
| TGAAATCATCTCGACAAACA+AGG | + | chr1.4:83723576-83723595 | None:intergenic | 35.0% | |
| TTAGGATTACTTGACGCTTA+AGG | + | chr1.4:83723434-83723453 | None:intergenic | 35.0% | |
| TTTGGATGAAGATAATGTGG+AGG | + | chr1.4:83722600-83722619 | None:intergenic | 35.0% | |
| ! | GACATTTGACTTCAATAGTC+TGG | - | chr1.4:83723604-83723623 | MS.gene73435:CDS | 35.0% |
| ! | GTATTTTGCTACTAATCTGC+TGG | - | chr1.4:83723040-83723059 | MS.gene73435:intron | 35.0% |
| AAAGATAACTGGGCTACAAG+TGG | - | chr1.4:83722983-83723002 | MS.gene73435:CDS | 40.0% | |
| ATGAAGCGATGAATCTTGTG+AGG | - | chr1.4:83722464-83722483 | MS.gene73435:intron | 40.0% | |
| CAAAACCACAAGTACAATGG+AGG | - | chr1.4:83722816-83722835 | MS.gene73435:CDS | 40.0% | |
| CAAGTTCTTCACATATTCCC+AGG | + | chr1.4:83723871-83723890 | None:intergenic | 40.0% | |
| CATTGGGCAAATGAATTGTC+CGG | - | chr1.4:83721960-83721979 | MS.gene73435:CDS | 40.0% | |
| CCAAAATAACTCTCCATGCA+AGG | + | chr1.4:83723162-83723181 | None:intergenic | 40.0% | |
| CCAAAGAGTTTGCAACACTA+TGG | - | chr1.4:83722150-83722169 | MS.gene73435:intron | 40.0% | |
| CCAATTAGAGTGATGTTTGG+TGG | - | chr1.4:83723971-83723990 | MS.gene73435:CDS | 40.0% | |
| CCACCAAACATCACTCTAAT+TGG | + | chr1.4:83723974-83723993 | None:intergenic | 40.0% | |
| CCATAGTGTTGCAAACTCTT+TGG | + | chr1.4:83722153-83722172 | None:intergenic | 40.0% | |
| CTGGGAGAAGACAATTCTAT+CGG | - | chr1.4:83723059-83723078 | MS.gene73435:intron | 40.0% | |
| GCAGCAAAATATTCAAGACC+TGG | - | chr1.4:83723850-83723869 | MS.gene73435:CDS | 40.0% | |
| GCGATCAAAAGCTACATGAT+GGG | - | chr1.4:83722075-83722094 | MS.gene73435:CDS | 40.0% | |
| GGATAGATAAGTATCTGACC+TGG | + | chr1.4:83723211-83723230 | None:intergenic | 40.0% | |
| GGTTTCAGCTAATAGAAGAG+AGG | - | chr1.4:83722949-83722968 | MS.gene73435:CDS | 40.0% | |
| GTCTGGTGACAATCATGATA+AGG | - | chr1.4:83722298-83722317 | MS.gene73435:intron | 40.0% | |
| TGACAATCCAAGTACAATGG+AGG | - | chr1.4:83724051-83724070 | MS.gene73435:CDS | 40.0% | |
| TGCGATCAAAAGCTACATGA+TGG | - | chr1.4:83722074-83722093 | MS.gene73435:CDS | 40.0% | |
| TGGAATGTTAAGTCAACGTC+AGG | + | chr1.4:83723917-83723936 | None:intergenic | 40.0% | |
| TGGGAGAAGACAATTCTATC+GGG | - | chr1.4:83723060-83723079 | MS.gene73435:intron | 40.0% | |
| TGTTGTGAGCCACAATTGAA+AGG | - | chr1.4:83723233-83723252 | MS.gene73435:intron | 40.0% | |
| TTGCATCACAGGATAGACAA+AGG | + | chr1.4:83721935-83721954 | None:intergenic | 40.0% | |
| TTGTCTATCCTGTGATGCAA+AGG | - | chr1.4:83721935-83721954 | MS.gene73435:CDS | 40.0% | |
| ! | AATGTGGAGGCTCACATTTT+AGG | + | chr1.4:83722587-83722606 | None:intergenic | 40.0% |
| ! | CCTTGCATGGAGAGTTATTT+TGG | - | chr1.4:83723159-83723178 | MS.gene73435:intron | 40.0% |
| ! | CTTCGGTTTTCCCAAGATTT+TGG | + | chr1.4:83722618-83722637 | None:intergenic | 40.0% |
| ! | GTGAATTTTGCACAGCATTG+AGG | - | chr1.4:83721877-83721896 | MS.gene73435:CDS | 40.0% |
| ! | TTTTATGCTGGTCACAGCAT+TGG | - | chr1.4:83722545-83722564 | MS.gene73435:intron | 40.0% |
| !! | TGAAAACAGTGTCGATCAGA+AGG | - | chr1.4:83722193-83722212 | MS.gene73435:intron | 40.0% |
| AACAGCACGAGTTACACACA+AGG | + | chr1.4:83722001-83722020 | None:intergenic | 45.0% | |
| AAGCGATGAATCTTGTGAGG+AGG | - | chr1.4:83722467-83722486 | MS.gene73435:intron | 45.0% | |
| AAGTATGTAATAGGGGGCAG+AGG | + | chr1.4:83723549-83723568 | None:intergenic | 45.0% | |
| ACAGCACGAGTTACACACAA+GGG | + | chr1.4:83722000-83722019 | None:intergenic | 45.0% | |
| AGTATGTAATAGGGGGCAGA+GGG | + | chr1.4:83723548-83723567 | None:intergenic | 45.0% | |
| ATAACTCTCCATGCAAGGGA+AGG | + | chr1.4:83723157-83723176 | None:intergenic | 45.0% | |
| ATTATGTGGGGTACATCCCT+TGG | - | chr1.4:83723264-83723283 | MS.gene73435:intron | 45.0% | |
| CGGACAATTCATTTGCCCAA+TGG | + | chr1.4:83721962-83721981 | None:intergenic | 45.0% | |
| CTGTGATGCAAAGGTCCATT+GGG | - | chr1.4:83721944-83721963 | MS.gene73435:CDS | 45.0% | |
| GGGAGAAGACAATTCTATCG+GGG | - | chr1.4:83723061-83723080 | MS.gene73435:intron | 45.0% | |
| GTTGCAAACTCTTTGGCAGA+AGG | + | chr1.4:83722146-83722165 | None:intergenic | 45.0% | |
| TCAATTGTGGCTCACAACAG+TGG | + | chr1.4:83723232-83723251 | None:intergenic | 45.0% | |
| TCAGACCTCCATTGTACTTG+TGG | + | chr1.4:83722824-83722843 | None:intergenic | 45.0% | |
| TCTTGCGTATGTTCAGTGCT+TGG | - | chr1.4:83722025-83722044 | MS.gene73435:CDS | 45.0% | |
| TTGACAGATCGTTTGCGATG+TGG | + | chr1.4:83722107-83722126 | None:intergenic | 45.0% | |
| AAGGGATCCAGCAGTCAACT+AGG | - | chr1.4:83722317-83722336 | MS.gene73435:intron | 50.0% | |
| ACGAGTTACACACAAGGGTC+CGG | + | chr1.4:83721995-83722014 | None:intergenic | 50.0% | |
| ATCCAGCAGTCAACTAGGTC+AGG | - | chr1.4:83722322-83722341 | MS.gene73435:intron | 50.0% | |
| CCAATGGACCTTTGCATCAC+AGG | + | chr1.4:83721946-83721965 | None:intergenic | 50.0% | |
| CCTGTGATGCAAAGGTCCAT+TGG | - | chr1.4:83721943-83721962 | MS.gene73435:CDS | 50.0% | |
| GTTATGGACCTTCCCTTGCA+TGG | - | chr1.4:83723146-83723165 | MS.gene73435:intron | 50.0% | |
| TACCTGACCTAGTTGACTGC+TGG | + | chr1.4:83722327-83722346 | None:intergenic | 50.0% | |
| TCAGTCACTTCAACGACGTC+TGG | - | chr1.4:83722281-83722300 | MS.gene73435:intron | 50.0% | |
| ! | GTGGAGGCTCACATTTTAGG+AGG | + | chr1.4:83722584-83722603 | None:intergenic | 50.0% |
| AGTTACACACAAGGGTCCGG+AGG | + | chr1.4:83721992-83722011 | None:intergenic | 55.0% | |
| GGGCAAATGAATTGTCCGGC+CGG | - | chr1.4:83721964-83721983 | MS.gene73435:CDS | 55.0% | |
| AATTGTCCGGCCGGCACCTC+CGG | - | chr1.4:83721973-83721992 | MS.gene73435:CDS | 65.0% | |
| ! | ACACAAGGGTCCGGAGGTGC+CGG | + | chr1.4:83721986-83722005 | None:intergenic | 65.0% |
| !! | AAGGGTCCGGAGGTGCCGGC+CGG | + | chr1.4:83721982-83722001 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 83721864 | 83724078 | 83721864 | ID=MS.gene73435 |
| chr1.4 | mRNA | 83721864 | 83724078 | 83721864 | ID=MS.gene73435.t1;Parent=MS.gene73435 |
| chr1.4 | exon | 83723599 | 83724078 | 83723599 | ID=MS.gene73435.t1.exon1;Parent=MS.gene73435.t1 |
| chr1.4 | CDS | 83723599 | 83724078 | 83723599 | ID=cds.MS.gene73435.t1;Parent=MS.gene73435.t1 |
| chr1.4 | exon | 83722731 | 83723051 | 83722731 | ID=MS.gene73435.t1.exon2;Parent=MS.gene73435.t1 |
| chr1.4 | CDS | 83722731 | 83723051 | 83722731 | ID=cds.MS.gene73435.t1;Parent=MS.gene73435.t1 |
| chr1.4 | exon | 83721864 | 83722097 | 83721864 | ID=MS.gene73435.t1.exon3;Parent=MS.gene73435.t1 |
| chr1.4 | CDS | 83721864 | 83722097 | 83721864 | ID=cds.MS.gene73435.t1;Parent=MS.gene73435.t1 |
| Gene Sequence |
| Protein sequence |
