AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052326


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052326.t1 MTR_4g076600 98.916 369 4 0 1 369 1 369 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052326.t1 AT5G08280 80.352 341 56 2 37 369 45 382 0.0 561

Find 90 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATGAAGCACTCATAAA+TGG 0.266891 4.4:-33874411 MS.gene052326:CDS
CTACCGGCTGGAAGTGTTAT+TGG 0.289880 4.4:-33874252 MS.gene052326:CDS
AATTCTAATAATCGCAGTTT+TGG 0.297866 4.4:+33875344 None:intergenic
GGTTGTCAAAGCTACCTTAT+TGG 0.316380 4.4:-33873657 MS.gene052326:CDS
CTGATACGACATTTGGAAAA+AGG 0.322162 4.4:+33875402 None:intergenic
TCTTGCCGAACGCCTATTGC+AGG 0.323184 4.4:-33873084 MS.gene052326:CDS
GGCTATTCCAATTGCACCTT+GGG 0.335647 4.4:+33873553 None:intergenic
GATGGAAATTGCTTGTTTAG+AGG 0.343657 4.4:-33873042 MS.gene052326:CDS
GAAGGATTGGAAGGTGTAGA+AGG 0.351735 4.4:+33875474 None:intergenic
GTGCTTGAAACTTCCAGAAT+TGG 0.358982 4.4:-33872903 MS.gene052326:CDS
CAGTCCAGCTAGAGCCAATA+AGG 0.371368 4.4:+33873643 None:intergenic
TAGAAGTAATGATGATAAAA+TGG 0.372536 4.4:-33873528 MS.gene052326:intron
AAAACTGCGATTATTAGAAT+TGG 0.380075 4.4:-33875342 MS.gene052326:CDS
CTTCTTTCTCGAGCTGGACC+TGG 0.382803 4.4:-33872828 MS.gene052326:CDS
ATAAGCATAAGGACCAATTC+TGG 0.397488 4.4:+33872890 None:intergenic
GAGAAGGAAAGGGGAAGGAT+TGG 0.401621 4.4:+33875461 None:intergenic
TTAGAGCAGTCCACTAGCTT+TGG 0.407368 4.4:-33874589 MS.gene052326:intron
TTTATCATCATTACTTCTAC+AGG 0.410377 4.4:+33873532 None:intergenic
AAGAGCCTTCCTTACGACTT+TGG 0.415933 4.4:-33873112 MS.gene052326:CDS
GCTGTTGCCCAAGGTGCAAT+TGG 0.417047 4.4:-33873560 MS.gene052326:CDS
TAGATGAAGCACTCATAAAT+GGG 0.423935 4.4:-33874410 MS.gene052326:CDS
CTGCTAGCATACCCTGCAAT+AGG 0.427411 4.4:+33873072 None:intergenic
TTCATACCACGGGTTCCATC+GGG 0.433712 4.4:+33873006 None:intergenic
GGAAGCTCTGATACGACATT+TGG 0.445537 4.4:+33875395 None:intergenic
AGAATGCAGAAGAGGAAGAA+AGG 0.466442 4.4:+33875502 None:intergenic
AATCTGAATAGCCCCTTCTT+CGG 0.467642 4.4:+33874515 None:intergenic
GAGGAGCTTCTTTCTCGAGC+TGG 0.476446 4.4:-33872834 MS.gene052326:CDS
CATACAGAGTTAGCCGAAGA+AGG 0.479546 4.4:-33874528 MS.gene052326:CDS
ATCATATCTTCATAAGCATA+AGG 0.480067 4.4:+33872879 None:intergenic
GCCTTCCTTACGACTTTGGA+TGG 0.480690 4.4:-33873108 MS.gene052326:CDS
ATTGCACCTTGGGCAACAGC+TGG 0.489725 4.4:+33873563 None:intergenic
GTTCATACCACGGGTTCCAT+CGG 0.490215 4.4:+33873005 None:intergenic
GAATGCAGAAGAGGAAGAAA+GGG 0.492559 4.4:+33875503 None:intergenic
GATGGGTAAGGATGCGGGTG+AGG 0.498552 4.4:-33872853 MS.gene052326:CDS
GCTACCTTATTGGCTCTAGC+TGG 0.499498 4.4:-33873647 MS.gene052326:CDS
ATGAAGATGGGTAAGGATGC+GGG 0.500619 4.4:-33872858 MS.gene052326:CDS
CAAGAAGAACTGAGAAGGAA+AGG 0.502363 4.4:+33875450 None:intergenic
AAGAAGAACTGAGAAGGAAA+GGG 0.502979 4.4:+33875451 None:intergenic
AGGAAGAGAGAATGCAGAAG+AGG 0.515566 4.4:+33875494 None:intergenic
AGGAAAGGGGAAGGATTGGA+AGG 0.521629 4.4:+33875465 None:intergenic
TCCTCTCGTGGAAGGTTGCA+TGG 0.526187 4.4:+33874321 None:intergenic
AGGCTATTCCAATTGCACCT+TGG 0.526245 4.4:+33873552 None:intergenic
CGTAAGGAAGGCTCTTTCAC+AGG 0.530222 4.4:+33873119 None:intergenic
GAACTGAGAAGGAAAGGGGA+AGG 0.541355 4.4:+33875456 None:intergenic
TCCGTGGAAATGTGCAAACA+AGG 0.548138 4.4:-33873700 MS.gene052326:CDS
CTCTGACATCCTCTCGTGGA+AGG 0.548713 4.4:+33874313 None:intergenic
TCACTAGGTGATCTACCGGC+TGG 0.549656 4.4:-33874264 MS.gene052326:CDS
TCGCAACCGCTTGCAGACAT+AGG 0.549665 4.4:-33874459 MS.gene052326:CDS
GCCTTGTTTGCACATTTCCA+CGG 0.551589 4.4:+33873699 None:intergenic
TTAGAATTGGTACTAGAGGA+AGG 0.555106 4.4:-33875329 MS.gene052326:intron
ATACAGAGTTAGCCGAAGAA+GGG 0.556716 4.4:-33874527 MS.gene052326:CDS
AGCTTCACTAGGTGATCTAC+CGG 0.558112 4.4:-33874268 MS.gene052326:CDS
GATGAAGATGGGTAAGGATG+CGG 0.558385 4.4:-33872859 MS.gene052326:CDS
CATACCCTGCAATAGGCGTT+CGG 0.559656 4.4:+33873079 None:intergenic
CAGTCCACTAGCTTTGGCTC+AGG 0.560597 4.4:-33874583 MS.gene052326:CDS
CAACCGCTTGCAGACATAGG+TGG 0.565596 4.4:-33874456 MS.gene052326:CDS
TATGAAGATATGATGAAGAT+GGG 0.569266 4.4:-33872870 MS.gene052326:CDS
CACCAGCTTACACTTAGAGA+TGG 0.571883 4.4:+33874186 None:intergenic
GCCATGCAACCTTCCACGAG+AGG 0.571886 4.4:-33874322 MS.gene052326:CDS
TGTGCCTGAGCCAAAGCTAG+TGG 0.577115 4.4:+33874579 None:intergenic
ACCATCCAAAGTCGTAAGGA+AGG 0.584751 4.4:+33873107 None:intergenic
ATTATTAGAATTGGTACTAG+AGG 0.585168 4.4:-33875333 MS.gene052326:CDS
AACCGCTTGCAGACATAGGT+GGG 0.586462 4.4:-33874455 MS.gene052326:CDS
AAGAACCATCCAAAGTCGTA+AGG 0.589630 4.4:+33873103 None:intergenic
TTATGAAGATATGATGAAGA+TGG 0.590771 4.4:-33872871 MS.gene052326:CDS
GCTTGCAGACATAGGTGGGA+AGG 0.591309 4.4:-33874451 MS.gene052326:CDS
TCATTGAGTGCAGCTTCACT+AGG 0.592878 4.4:-33874279 MS.gene052326:CDS
CTTGCCGAACGCCTATTGCA+GGG 0.597053 4.4:-33873083 MS.gene052326:CDS
CGTCTGTTGCTCAACAGCAA+CGG 0.602185 4.4:+33875374 None:intergenic
AGGCTTAGAAAACTAAGTGA+GGG 0.602676 4.4:-33873680 MS.gene052326:CDS
ATGCTTCCAGCTGTTGCCCA+AGG 0.607443 4.4:-33873569 MS.gene052326:CDS
AGGGACAAGAAGAACTGAGA+AGG 0.608902 4.4:+33875445 None:intergenic
GGCTTAGAAAACTAAGTGAG+GGG 0.614093 4.4:-33873679 MS.gene052326:CDS
AGATATGATGAAGATGGGTA+AGG 0.614306 4.4:-33872865 MS.gene052326:CDS
GCATCTCTGACATCCTCTCG+TGG 0.614964 4.4:+33874309 None:intergenic
TTCCCACCTATGTCTGCAAG+CGG 0.617157 4.4:+33874453 None:intergenic
CACTTAGAGATGGATATCTG+TGG 0.621615 4.4:+33874196 None:intergenic
AGAAGAACTGAGAAGGAAAG+GGG 0.621960 4.4:+33875452 None:intergenic
TACAGAGTTAGCCGAAGAAG+GGG 0.622163 4.4:-33874526 MS.gene052326:CDS
CTTGCAGACATAGGTGGGAA+GGG 0.623209 4.4:-33874450 MS.gene052326:CDS
CATACCACGGGTTCCATCGG+GGG 0.623605 4.4:+33873008 None:intergenic
AAGGCTTAGAAAACTAAGTG+AGG 0.637139 4.4:-33873681 MS.gene052326:CDS
CAGGTGCAAGATAATTTCCG+TGG 0.647977 4.4:-33873716 MS.gene052326:CDS
AGGGTATGCTAGCAGAGACA+AGG 0.654347 4.4:-33873064 MS.gene052326:CDS
TATGCTAGCAGAGACAAGGA+TGG 0.659151 4.4:-33873060 MS.gene052326:CDS
AGATGAAGCACTCATAAATG+GGG 0.661644 4.4:-33874409 MS.gene052326:CDS
TTAGAGATGGATATCTGTGG+AGG 0.669578 4.4:+33874199 None:intergenic
TCATACCACGGGTTCCATCG+GGG 0.679110 4.4:+33873007 None:intergenic
GCTTAGAAAACTAAGTGAGG+GGG 0.696029 4.4:-33873678 MS.gene052326:CDS
GTACCAATAACACTTCCAGC+CGG 0.706296 4.4:+33874249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATCAATAATAAT+CGG + chr4.4:33874571-33874590 None:intergenic 10.0%
!! AATATAAATTCTCAGATATT+GGG + chr4.4:33875021-33875040 None:intergenic 15.0%
!! AATCATTTAACTAATAGTAT+GGG + chr4.4:33873672-33873691 None:intergenic 15.0%
!! ATTGTAATAATAAAAACAAC+CGG - chr4.4:33873830-33873849 MS.gene052326:intron 15.0%
!! TAAAACAAAATACTGATATA+TGG + chr4.4:33873428-33873447 None:intergenic 15.0%
!! TAATCATTTAACTAATAGTA+TGG + chr4.4:33873673-33873692 None:intergenic 15.0%
!!! AAATCATAATCATTTTCTAA+TGG - chr4.4:33874213-33874232 MS.gene052326:CDS 15.0%
!!! AATCATAATCATTTTCTAAT+GGG - chr4.4:33874214-33874233 MS.gene052326:CDS 15.0%
!!! TCAAATTTGCATTTTTTTTT+TGG - chr4.4:33873224-33873243 MS.gene052326:intron 15.0%
!!! TTAGAAGATAATTTTAGAAA+GGG - chr4.4:33873501-33873520 MS.gene052326:intron 15.0%
!!! TTTTTGGCATTTATTTTAAT+GGG - chr4.4:33873240-33873259 MS.gene052326:intron 15.0%
!!! TTTTTTGGCATTTATTTTAA+TGG - chr4.4:33873239-33873258 MS.gene052326:intron 15.0%
!! ATAACAAAAGAAACCAAATA+TGG + chr4.4:33873619-33873638 None:intergenic 20.0%
!! ATATAAATTCTCAGATATTG+GGG + chr4.4:33875020-33875039 None:intergenic 20.0%
!! CAACTTATAATTATAATCTC+AGG - chr4.4:33874590-33874609 MS.gene052326:intron 20.0%
!! CAATATAAATTCTCAGATAT+TGG + chr4.4:33875022-33875041 None:intergenic 20.0%
!! TAACAAAAGAAACCAAATAT+GGG + chr4.4:33873618-33873637 None:intergenic 20.0%
!! TAGAAGTAATGATGATAAAA+TGG - chr4.4:33874797-33874816 MS.gene052326:intron 20.0%
!! TAGACAATAGCTATATAAAA+AGG + chr4.4:33874432-33874451 None:intergenic 20.0%
!! TTGAGTTAATAAACAAACAT+TGG - chr4.4:33874283-33874302 MS.gene052326:CDS 20.0%
!!! ATATTTGGTTTCTTTTGTTA+TGG - chr4.4:33873618-33873637 MS.gene052326:CDS 20.0%
!!! ATCTGAAATATTTCAATTCA+AGG - chr4.4:33875057-33875076 MS.gene052326:intron 20.0%
!!! ATTGTTATTGTCAAAAGAAA+AGG - chr4.4:33873349-33873368 MS.gene052326:intron 20.0%
!!! CTTAGAAGATAATTTTAGAA+AGG - chr4.4:33873500-33873519 MS.gene052326:intron 20.0%
!!! TTGTTATTGTCAAAAGAAAA+GGG - chr4.4:33873350-33873369 MS.gene052326:intron 20.0%
! AAAACTGCGATTATTAGAAT+TGG - chr4.4:33872983-33873002 MS.gene052326:intron 25.0%
! AAGAAAATCAATCCCATATT+TGG - chr4.4:33873603-33873622 MS.gene052326:CDS 25.0%
! AGAAGAAAAATAACGAAAGA+AGG + chr4.4:33874470-33874489 None:intergenic 25.0%
! AGCATTTAATGCATTCATAA+TGG - chr4.4:33874256-33874275 MS.gene052326:CDS 25.0%
! ATCATATCTTCATAAGCATA+AGG + chr4.4:33875449-33875468 None:intergenic 25.0%
! ATTATGAATGCTTTCATTGT+TGG - chr4.4:33873689-33873708 MS.gene052326:CDS 25.0%
! ATTATTAGAATTGGTACTAG+AGG - chr4.4:33872992-33873011 MS.gene052326:intron 25.0%
! ATTTGACGAAAAAACCAATA+TGG + chr4.4:33874197-33874216 None:intergenic 25.0%
! TAGGCAAGTTCATAAAATAT+AGG + chr4.4:33874833-33874852 None:intergenic 25.0%
! TATGAAGATATGATGAAGAT+GGG - chr4.4:33875455-33875474 MS.gene052326:CDS 25.0%
! TGTTATTGTCAAAAGAAAAG+GGG - chr4.4:33873351-33873370 MS.gene052326:intron 25.0%
! TTATGAAGATATGATGAAGA+TGG - chr4.4:33875454-33875473 MS.gene052326:CDS 25.0%
! TTTATCATCATTACTTCTAC+AGG + chr4.4:33874796-33874815 None:intergenic 25.0%
!! AATTCTAATAATCGCAGTTT+TGG + chr4.4:33872984-33873003 None:intergenic 25.0%
!!! CACTTTTGGTGTTTAAATTT+TGG - chr4.4:33874872-33874891 MS.gene052326:intron 25.0%
!!! CAGTTTAGTTTTACCATATT+TGG - chr4.4:33875117-33875136 MS.gene052326:intron 25.0%
!!! TGACTTTTTTTTATGCTTCT+GGG - chr4.4:33873094-33873113 MS.gene052326:CDS 25.0%
!!! TTAGTTTTACCATATTTGGT+CGG - chr4.4:33875121-33875140 MS.gene052326:intron 25.0%
!!! TTGACTTTTTTTTATGCTTC+TGG - chr4.4:33873093-33873112 MS.gene052326:CDS 25.0%
!!! TTTTCTGTCATTTAGCTTTA+TGG - chr4.4:33874537-33874556 MS.gene052326:CDS 25.0%
AAAAATAACGAAAGAAGGCA+TGG + chr4.4:33874465-33874484 None:intergenic 30.0%
AAGGTTAACTCTTAAAACAC+AGG + chr4.4:33874413-33874432 None:intergenic 30.0%
ACCATTAACAACATGGATAA+TGG - chr4.4:33874325-33874344 MS.gene052326:CDS 30.0%
ACCATTATCCATGTTGTTAA+TGG + chr4.4:33874329-33874348 None:intergenic 30.0%
ATGCAAATTTGAGCTAAAGT+TGG + chr4.4:33873216-33873235 None:intergenic 30.0%
GTTTGATGTTTCATCATTCA+AGG - chr4.4:33873396-33873415 MS.gene052326:intron 30.0%
TCTGAGAATTTATATTGACG+AGG - chr4.4:33875025-33875044 MS.gene052326:intron 30.0%
TTAAATGCTTGCAATCATCT+TGG - chr4.4:33873541-33873560 MS.gene052326:CDS 30.0%
TTGACTATATTGTGAGCTAT+TGG - chr4.4:33874906-33874925 MS.gene052326:intron 30.0%
! AAAATAACGAAAGAAGGCAT+GGG + chr4.4:33874464-33874483 None:intergenic 30.0%
! ACTGCTCTAAATGTAAACAT+AGG + chr4.4:33873726-33873745 None:intergenic 30.0%
! ATAGATGAAGCACTCATAAA+TGG - chr4.4:33873914-33873933 MS.gene052326:intron 30.0%
! ATTTCATTCTTTTCTGCTTC+TGG - chr4.4:33873164-33873183 MS.gene052326:CDS 30.0%
! CAATCAAAAGTTAGAAGCAT+AGG - chr4.4:33874936-33874955 MS.gene052326:intron 30.0%
! CTTCTGGGTTCTTTTTATAT+TGG - chr4.4:33873109-33873128 MS.gene052326:CDS 30.0%
! TAGATGAAGCACTCATAAAT+GGG - chr4.4:33873915-33873934 MS.gene052326:intron 30.0%
! TTTCATTCTTTTCTGCTTCT+GGG - chr4.4:33873165-33873184 MS.gene052326:CDS 30.0%
! TTTTCAACAAGTCAGACAAT+AGG + chr4.4:33874852-33874871 None:intergenic 30.0%
!! ATAATCATTTTCTAATGGGC+TGG - chr4.4:33874218-33874237 MS.gene052326:CDS 30.0%
!!! AATTCACTCTTTTTTGCTTC+TGG - chr4.4:33873020-33873039 MS.gene052326:CDS 30.0%
!!! ATTCACTCTTTTTTGCTTCT+GGG - chr4.4:33873021-33873040 MS.gene052326:CDS 30.0%
!!! TGACTTGTTGAAAACACTTT+TGG - chr4.4:33874858-33874877 MS.gene052326:intron 30.0%
!!! TGGCATTTATTTTAATGGGT+TGG - chr4.4:33873244-33873263 MS.gene052326:intron 30.0%
AAGAAGAACTGAGAAGGAAA+GGG + chr4.4:33872877-33872896 None:intergenic 35.0%
AAGGCTTAGAAAACTAAGTG+AGG - chr4.4:33874644-33874663 MS.gene052326:intron 35.0%
AATTCTCAGATATTGGGGAA+AGG + chr4.4:33875015-33875034 None:intergenic 35.0%
AGATATGATGAAGATGGGTA+AGG - chr4.4:33875460-33875479 MS.gene052326:CDS 35.0%
AGGCTTAGAAAACTAAGTGA+GGG - chr4.4:33874645-33874664 MS.gene052326:intron 35.0%
ATAAGCATAAGGACCAATTC+TGG + chr4.4:33875438-33875457 None:intergenic 35.0%
ATACGACATTTGGAAAAAGG+TGG + chr4.4:33872923-33872942 None:intergenic 35.0%
ATTCTCAGATATTGGGGAAA+GGG + chr4.4:33875014-33875033 None:intergenic 35.0%
CTGATACGACATTTGGAAAA+AGG + chr4.4:33872926-33872945 None:intergenic 35.0%
GATGGAAATTGCTTGTTTAG+AGG - chr4.4:33875283-33875302 MS.gene052326:intron 35.0%
TACGACATTTGGAAAAAGGT+GGG + chr4.4:33872922-33872941 None:intergenic 35.0%
TATTTCAATTCAAGGAGCGA+AGG - chr4.4:33875065-33875084 MS.gene052326:intron 35.0%
TCTTGTCACCATTAACAACA+TGG - chr4.4:33874318-33874337 MS.gene052326:CDS 35.0%
TTAGAATTGGTACTAGAGGA+AGG - chr4.4:33872996-33873015 MS.gene052326:intron 35.0%
! AGATGAAGCACTCATAAATG+GGG - chr4.4:33873916-33873935 MS.gene052326:intron 35.0%
! CATGGCAAAATTGTTTTCTC+GGG + chr4.4:33873989-33874008 None:intergenic 35.0%
! GATAGTGTGTTGTTGACATT+TGG - chr4.4:33873324-33873343 MS.gene052326:intron 35.0%
! GCATGGCAAAATTGTTTTCT+CGG + chr4.4:33873990-33874009 None:intergenic 35.0%
! TGATTTTCGTCTAAGTGATG+CGG + chr4.4:33874101-33874120 None:intergenic 35.0%
! TTGCGACAGTATTTTATCAC+CGG + chr4.4:33873852-33873871 None:intergenic 35.0%
AAGAACCATCCAAAGTCGTA+AGG + chr4.4:33875225-33875244 None:intergenic 40.0%
AATCTGAATAGCCCCTTCTT+CGG + chr4.4:33873813-33873832 None:intergenic 40.0%
AGAAATCAGCCGACCAAATA+TGG + chr4.4:33875133-33875152 None:intergenic 40.0%
AGAAGAACTGAGAAGGAAAG+GGG + chr4.4:33872876-33872895 None:intergenic 40.0%
AGAATGCAGAAGAGGAAGAA+AGG + chr4.4:33872826-33872845 None:intergenic 40.0%
ATACAGAGTTAGCCGAAGAA+GGG - chr4.4:33873798-33873817 MS.gene052326:intron 40.0%
ATCCATCTCTAAGTGTAAGC+TGG - chr4.4:33874137-33874156 MS.gene052326:intron 40.0%
CAAGAAGAACTGAGAAGGAA+AGG + chr4.4:33872878-33872897 None:intergenic 40.0%
CACTTAGAGATGGATATCTG+TGG + chr4.4:33874132-33874151 None:intergenic 40.0%
CTGCAAAGATGTTCATACCA+CGG + chr4.4:33875333-33875352 None:intergenic 40.0%
GAATGCAGAAGAGGAAGAAA+GGG + chr4.4:33872825-33872844 None:intergenic 40.0%
GCTTAGAAAACTAAGTGAGG+GGG - chr4.4:33874647-33874666 MS.gene052326:intron 40.0%
GGCTTAGAAAACTAAGTGAG+GGG - chr4.4:33874646-33874665 MS.gene052326:intron 40.0%
GGTTGTCAAAGCTACCTTAT+TGG - chr4.4:33874668-33874687 MS.gene052326:intron 40.0%
GTCATTGCATGGTTCGAATA+AGG + chr4.4:33874990-33875009 None:intergenic 40.0%
GTGCTTGAAACTTCCAGAAT+TGG - chr4.4:33875422-33875441 MS.gene052326:CDS 40.0%
TGCAAAGATGTTCATACCAC+GGG + chr4.4:33875332-33875351 None:intergenic 40.0%
TTAGAGATGGATATCTGTGG+AGG + chr4.4:33874129-33874148 None:intergenic 40.0%
TTCTCAGATATTGGGGAAAG+GGG + chr4.4:33875013-33875032 None:intergenic 40.0%
! AGCTGTTTCACATGTTGACT+TGG - chr4.4:33873299-33873318 MS.gene052326:intron 40.0%
! AGTTTCAAGCACTGCACAAA+CGG + chr4.4:33875414-33875433 None:intergenic 40.0%
! GTTTTCTCGGGCAAATAAGT+AGG + chr4.4:33873977-33873996 None:intergenic 40.0%
!! ATGGGTTGGTGCTATATGTT+AGG - chr4.4:33873258-33873277 MS.gene052326:intron 40.0%
!! TGTTTCACATGTTGACTTGG+TGG - chr4.4:33873302-33873321 MS.gene052326:intron 40.0%
AAGAGCCTTCCTTACGACTT+TGG - chr4.4:33875213-33875232 MS.gene052326:intron 45.0%
ACCATCCAAAGTCGTAAGGA+AGG + chr4.4:33875221-33875240 None:intergenic 45.0%
AGAGTCATACTCGAGGATAC+TGG - chr4.4:33874381-33874400 MS.gene052326:CDS 45.0%
AGCTTCACTAGGTGATCTAC+CGG - chr4.4:33874057-33874076 MS.gene052326:intron 45.0%
AGGAAGAGAGAATGCAGAAG+AGG + chr4.4:33872834-33872853 None:intergenic 45.0%
AGGCTATTCCAATTGCACCT+TGG + chr4.4:33874776-33874795 None:intergenic 45.0%
AGGGACAAGAAGAACTGAGA+AGG + chr4.4:33872883-33872902 None:intergenic 45.0%
ATATGGCAGACACTGAACAG+TGG + chr4.4:33874180-33874199 None:intergenic 45.0%
ATGAAGATGGGTAAGGATGC+GGG - chr4.4:33875467-33875486 MS.gene052326:CDS 45.0%
CACCAGCTTACACTTAGAGA+TGG + chr4.4:33874142-33874161 None:intergenic 45.0%
CAGGTGCAAGATAATTTCCG+TGG - chr4.4:33874609-33874628 MS.gene052326:intron 45.0%
CATACAGAGTTAGCCGAAGA+AGG - chr4.4:33873797-33873816 MS.gene052326:intron 45.0%
CTGTTCAGTGTCTGCCATAT+TGG - chr4.4:33874180-33874199 MS.gene052326:intron 45.0%
GAGTCATACTCGAGGATACT+GGG - chr4.4:33874382-33874401 MS.gene052326:CDS 45.0%
GATGAAGATGGGTAAGGATG+CGG - chr4.4:33875466-33875485 MS.gene052326:CDS 45.0%
GGCTATTCCAATTGCACCTT+GGG + chr4.4:33874775-33874794 None:intergenic 45.0%
GTACCAATAACACTTCCAGC+CGG + chr4.4:33874079-33874098 None:intergenic 45.0%
TACAGAGTTAGCCGAAGAAG+GGG - chr4.4:33873799-33873818 MS.gene052326:intron 45.0%
TATGCTAGCAGAGACAAGGA+TGG - chr4.4:33875265-33875284 MS.gene052326:intron 45.0%
TCATTGAGTGCAGCTTCACT+AGG - chr4.4:33874046-33874065 MS.gene052326:intron 45.0%
TCCGTGGAAATGTGCAAACA+AGG - chr4.4:33874625-33874644 MS.gene052326:intron 45.0%
TCTCAGATATTGGGGAAAGG+GGG + chr4.4:33875012-33875031 None:intergenic 45.0%
! CACTGCACAAACGGAGTTTT+GGG + chr4.4:33875405-33875424 None:intergenic 45.0%
! GAAGGATTGGAAGGTGTAGA+AGG + chr4.4:33872854-33872873 None:intergenic 45.0%
! GGAAGCTCTGATACGACATT+TGG + chr4.4:33872933-33872952 None:intergenic 45.0%
! TTAGAGCAGTCCACTAGCTT+TGG - chr4.4:33873736-33873755 MS.gene052326:intron 45.0%
!! GCCTTGTTTGCACATTTCCA+CGG + chr4.4:33874629-33874648 None:intergenic 45.0%
!! GGGATTTTGAAAGACGCGAA+GGG + chr4.4:33872902-33872921 None:intergenic 45.0%
!! TGGGATTTTGAAAGACGCGA+AGG + chr4.4:33872903-33872922 None:intergenic 45.0%
AACCGCTTGCAGACATAGGT+GGG - chr4.4:33873870-33873889 MS.gene052326:intron 50.0%
ACGCTTGAGAGTCATACTCG+AGG - chr4.4:33874374-33874393 MS.gene052326:CDS 50.0%
AGGAAAGGGGAAGGATTGGA+AGG + chr4.4:33872863-33872882 None:intergenic 50.0%
AGGGTATGCTAGCAGAGACA+AGG - chr4.4:33875261-33875280 MS.gene052326:intron 50.0%
CAGTCCAGCTAGAGCCAATA+AGG + chr4.4:33874685-33874704 None:intergenic 50.0%
CATACCCTGCAATAGGCGTT+CGG + chr4.4:33875249-33875268 None:intergenic 50.0%
CGTAAGGAAGGCTCTTTCAC+AGG + chr4.4:33875209-33875228 None:intergenic 50.0%
CGTCTGTTGCTCAACAGCAA+CGG + chr4.4:33872954-33872973 None:intergenic 50.0%
CTGCTAGCATACCCTGCAAT+AGG + chr4.4:33875256-33875275 None:intergenic 50.0%
CTTGCAGACATAGGTGGGAA+GGG - chr4.4:33873875-33873894 MS.gene052326:intron 50.0%
GAACTGAGAAGGAAAGGGGA+AGG + chr4.4:33872872-33872891 None:intergenic 50.0%
GAGAAGGAAAGGGGAAGGAT+TGG + chr4.4:33872867-33872886 None:intergenic 50.0%
GCCTTCCTTACGACTTTGGA+TGG - chr4.4:33875217-33875236 MS.gene052326:intron 50.0%
GTTCATACCACGGGTTCCAT+CGG + chr4.4:33875323-33875342 None:intergenic 50.0%
TTCATACCACGGGTTCCATC+GGG + chr4.4:33875322-33875341 None:intergenic 50.0%
TTCCCACCTATGTCTGCAAG+CGG + chr4.4:33873875-33873894 None:intergenic 50.0%
! GCACTGCACAAACGGAGTTT+TGG + chr4.4:33875406-33875425 None:intergenic 50.0%
! TTTGGTCGGCTGATTTCTGC+AGG - chr4.4:33875135-33875154 MS.gene052326:intron 50.0%
!! CTACCGGCTGGAAGTGTTAT+TGG - chr4.4:33874073-33874092 MS.gene052326:intron 50.0%
!! GCTACCTTATTGGCTCTAGC+TGG - chr4.4:33874678-33874697 MS.gene052326:intron 50.0%
ATGCTTCCAGCTGTTGCCCA+AGG - chr4.4:33874756-33874775 MS.gene052326:intron 55.0%
ATTGCACCTTGGGCAACAGC+TGG + chr4.4:33874765-33874784 None:intergenic 55.0%
CAACCGCTTGCAGACATAGG+TGG - chr4.4:33873869-33873888 MS.gene052326:intron 55.0%
CTCTGACATCCTCTCGTGGA+AGG + chr4.4:33874015-33874034 None:intergenic 55.0%
CTTCTTTCTCGAGCTGGACC+TGG - chr4.4:33875497-33875516 MS.gene052326:CDS 55.0%
CTTGCCGAACGCCTATTGCA+GGG - chr4.4:33875242-33875261 MS.gene052326:intron 55.0%
GAGGAGCTTCTTTCTCGAGC+TGG - chr4.4:33875491-33875510 MS.gene052326:CDS 55.0%
GCATCTCTGACATCCTCTCG+TGG + chr4.4:33874019-33874038 None:intergenic 55.0%
GCTGTTGCCCAAGGTGCAAT+TGG - chr4.4:33874765-33874784 MS.gene052326:intron 55.0%
GCTTGCAGACATAGGTGGGA+AGG - chr4.4:33873874-33873893 MS.gene052326:intron 55.0%
TCACTAGGTGATCTACCGGC+TGG - chr4.4:33874061-33874080 MS.gene052326:intron 55.0%
TCATACCACGGGTTCCATCG+GGG + chr4.4:33875321-33875340 None:intergenic 55.0%
TCCTCTCGTGGAAGGTTGCA+TGG + chr4.4:33874007-33874026 None:intergenic 55.0%
TCGCAACCGCTTGCAGACAT+AGG - chr4.4:33873866-33873885 MS.gene052326:intron 55.0%
TCTTGCCGAACGCCTATTGC+AGG - chr4.4:33875241-33875260 MS.gene052326:intron 55.0%
TGTGCCTGAGCCAAAGCTAG+TGG + chr4.4:33873749-33873768 None:intergenic 55.0%
!! CAGTCCACTAGCTTTGGCTC+AGG - chr4.4:33873742-33873761 MS.gene052326:intron 55.0%
!! GGATTAGTTGCTTCCCCCGA+TGG - chr4.4:33875304-33875323 MS.gene052326:intron 55.0%
CATACCACGGGTTCCATCGG+GGG + chr4.4:33875320-33875339 None:intergenic 60.0%
GATGGGTAAGGATGCGGGTG+AGG - chr4.4:33875472-33875491 MS.gene052326:CDS 60.0%
GCCATGCAACCTTCCACGAG+AGG - chr4.4:33874003-33874022 MS.gene052326:intron 60.0%
GGGGAAAGGGGGTCATTGCA+TGG + chr4.4:33875001-33875020 None:intergenic 60.0%
GCTTCCCCCGATGGAACCCG+TGG - chr4.4:33875313-33875332 MS.gene052326:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33872812 33875535 33872812 ID=MS.gene052326
chr4.4 mRNA 33872812 33875535 33872812 ID=MS.gene052326.t1;Parent=MS.gene052326
chr4.4 exon 33875330 33875535 33875330 ID=MS.gene052326.t1.exon1;Parent=MS.gene052326.t1
chr4.4 CDS 33875330 33875535 33875330 ID=cds.MS.gene052326.t1;Parent=MS.gene052326.t1
chr4.4 exon 33874197 33874602 33874197 ID=MS.gene052326.t1.exon2;Parent=MS.gene052326.t1
chr4.4 CDS 33874197 33874602 33874197 ID=cds.MS.gene052326.t1;Parent=MS.gene052326.t1
chr4.4 exon 33873529 33873735 33873529 ID=MS.gene052326.t1.exon3;Parent=MS.gene052326.t1
chr4.4 CDS 33873529 33873735 33873529 ID=cds.MS.gene052326.t1;Parent=MS.gene052326.t1
chr4.4 exon 33873013 33873190 33873013 ID=MS.gene052326.t1.exon4;Parent=MS.gene052326.t1
chr4.4 CDS 33873013 33873190 33873013 ID=cds.MS.gene052326.t1;Parent=MS.gene052326.t1
chr4.4 exon 33872812 33872924 33872812 ID=MS.gene052326.t1.exon5;Parent=MS.gene052326.t1
chr4.4 CDS 33872812 33872924 33872812 ID=cds.MS.gene052326.t1;Parent=MS.gene052326.t1
Gene Sequence

>MS.gene052326

ATGGAGATGACCCTTTCTTCCTCTTCTGCATTCTCTCTTCCTTCTACACCTTCCAATCCTTCCCCTTTCCTTCTCAGTTCTTCTTGTCCCTTCGCGTCTTTCAAAATCCCACCTTTTTCCAAATGTCGTATCAGAGCTTCCGTTGCTGTTGAGCAACAGACGCAACAAACCAAAACTGCGATTATTAGAATTGGTACTAGAGGAAGGTAATTCACTCTTTTTTGCTTCTGGGTTCTTTTTATTTTCGCTTAAAGTGTTCAACTTTAAGCTTAATTTTGCATTTGACTTTTTTTTATGCTTCTGGGTTCTTTTTATATTGGCTTAAAGTGTTCAACTTTTAGCTTAATTTTGCATTTCATTCTTTTCTGCTTCTGGGTTCTTGTTATTTTAGCTTAAATTGACCAACTTTAGCTCAAATTTGCATTTTTTTTTTGGCATTTATTTTAATGGGTTGGTGCTATATGTTAGGTTAAATTGTGTTTGATAAAGCTGTTTCACATGTTGACTTGGTGGATAGTGTGTTGTTGACATTTGGTGATTGTTATTGTCAAAAGAAAAGGGGTTTTGTTTTATGCAAGACACATGTTTGATGTTTCATCATTCAAGGATTTTGCCATATATCAGTATTTTGTTTTACAGTTTTTTGTTTAATGCATGTATAGAATCTCAACAGATCTCAATACACTTACTTAGAAGATAATTTTAGAAAGGGATAATTGAAATAATGAATTAAATGCTTGCAATCATCTTGGTAGATATAAGTGATTTTTTAGATACAATTGAATGTTTAAAAGAAAATCAATCCCATATTTGGTTTCTTTTGTTATGGATTTTTTTTATTTTTTGTTTTTATTTAGCCCATACTATTAGTTAAATGATTATGAATGCTTTCATTGTTGGTTTAACAAATTCCTATGTTTACATTTAGAGCAGTCCACTAGCTTTGGCTCAGGCACACGAGACTAGAGACAAACTCATAGCATCGCATACAGAGTTAGCCGAAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACCGGTGATAAAATACTGTCGCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTTACTAAAGAAATAGATGAAGCACTCATAAATGGGGACATTGACATTGCAGTTCACTCAATGAAAGATGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCATGCAACCTTCCACGAGAGGATGTCAGAGATGCGTTTATATCATTGAGTGCAGCTTCACTAGGTGATCTACCGGCTGGAAGTGTTATTGGTACCGCATCACTTAGACGAAAATCACAAATCCTCCACAGATATCCATCTCTAAGTGTAAGCTGGTGTATTCTTGATTTTTTCCACTGTTCAGTGTCTGCCATATTGGTTTTTTCGTCAAATCATAATCATTTTCTAATGGGCTGGTTTAGTTCTGATCAAAGCATTTAATGCATTCATAATGGATGTTTGAGTTAATAAACAAACATTGGTTTGTATAATTGTCTTGTCACCATTAACAACATGGATAATGGTTGAGTGTAGAGTAACAGAAAATGTCACGCTTGAGAGTCATACTCGAGGATACTGGGCACTACCTGTGTTTTAAGAGTTAACCTTTTTATATAGCTATTGTCTATAGCAATTTCCCATGCCTTCTTTCGTTATTTTTCTTCTACATTTTTGCTTTGTCTAATGTCATTTAATTGTTCTTTCATTACTTTTTTTCTGTCATTTAGCTTTATGGAAAATTGACCGATTATTATTGATTTTTATTCAACTTATAATTATAATCTCAGGTGCAAGATAATTTCCGTGGAAATGTGCAAACAAGGCTTAGAAAACTAAGTGAGGGGGTTGTCAAAGCTACCTTATTGGCTCTAGCTGGACTGAAACGATTAAATATGACAGAAAATGTTACTTCGACACTTTCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAAGTAATGATGATAAAATGGTGAGTGTTTACCTATATTTTATGAACTTGCCTATTGTCTGACTTGTTGAAAACACTTTTGGTGTTTAAATTTTGGTTGTATAATAATTGACTATATTGTGAGCTATTGGCTGTTGTCAATCAAAAGTTAGAAGCATAGGTAGAGATACAACTCATTTTGATATAAAACCTTATTCGAACCATGCAATGACCCCCTTTCCCCAATATCTGAGAATTTATATTGACGAGGAGCTATTGCATCTGAAATATTTCAATTCAAGGAGCGAAGGATTTTGTACTTGATAATGATATACTTGCGCAGTTTAGTTTTACCATATTTGGTCGGCTGATTTCTGCAGGCAGAATATCTTGCTTTGCTGAATCATGAAGAAACAAGATTAGCAATTTCCTGTGAAAGAGCCTTCCTTACGACTTTGGATGGTTCTTGCCGAACGCCTATTGCAGGGTATGCTAGCAGAGACAAGGATGGAAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCCGATGGAACCCGTGGTATGAACATCTTTGCAGTAAATTTGTTTAATTTGTGATTCATTGAAAGTTATCATTCTTAAGCTTGCCCAAAACTCCGTTTGTGCAGTGCTTGAAACTTCCAGAATTGGTCCTTATGCTTATGAAGATATGATGAAGATGGGTAAGGATGCGGGTGAGGAGCTTCTTTCTCGAGCTGGACCTGGTTTTTTCAATAGTTAA

Protein sequence

>MS.gene052326.t1

MEMTLSSSSAFSLPSTPSNPSPFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLGDLPAGSVIGTASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEYLALLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCLFRGLVASPDGTRVLETSRIGPYAYEDMMKMGKDAGEELLSRAGPGFFNS