Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73511.t1 | RHN59934.1 | 97.3 | 371 | 10 | 0 | 1 | 371 | 69 | 439 | 1.50E-210 | 741.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73511.t1 | G7JUL4 | 97.3 | 371 | 10 | 0 | 1 | 371 | 1 | 371 | 1.1e-210 | 741.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene73511 | 0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene73511 | 0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene058416 | MS.gene73511 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene73511 | 0.835134 | 2.00E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60267 | MS.gene73511 | PPI |
| MS.gene015971 | MS.gene73511 | PPI |
| MS.gene51556 | MS.gene73511 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73511.t1 | MTR_4g039720 | 97.305 | 371 | 10 | 0 | 1 | 371 | 1 | 371 | 0.0 | 746 |
| MS.gene73511.t1 | MTR_4g039740 | 92.391 | 368 | 27 | 1 | 4 | 371 | 1 | 367 | 0.0 | 704 |
| MS.gene73511.t1 | MTR_4g039680 | 90.083 | 363 | 36 | 0 | 9 | 371 | 5 | 367 | 0.0 | 686 |
| MS.gene73511.t1 | MTR_0045s0110 | 77.174 | 368 | 83 | 1 | 4 | 371 | 1 | 367 | 0.0 | 606 |
| MS.gene73511.t1 | MTR_1g011800 | 54.848 | 330 | 147 | 2 | 38 | 365 | 39 | 368 | 1.07e-131 | 382 |
| MS.gene73511.t1 | MTR_2g103170 | 46.685 | 362 | 180 | 3 | 10 | 365 | 7 | 361 | 7.83e-115 | 339 |
| MS.gene73511.t1 | MTR_2g019600 | 41.390 | 331 | 193 | 1 | 38 | 367 | 35 | 365 | 8.28e-93 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73511.t1 | AT3G08030 | 68.529 | 340 | 106 | 1 | 33 | 371 | 26 | 365 | 7.57e-179 | 501 |
| MS.gene73511.t1 | AT3G08030 | 69.969 | 323 | 96 | 1 | 50 | 371 | 1 | 323 | 3.43e-173 | 485 |
| MS.gene73511.t1 | AT2G41810 | 60.218 | 367 | 142 | 3 | 4 | 367 | 1 | 366 | 1.52e-160 | 455 |
| MS.gene73511.t1 | AT2G41800 | 63.253 | 332 | 121 | 1 | 38 | 368 | 36 | 367 | 3.05e-158 | 449 |
| MS.gene73511.t1 | AT5G25460 | 53.073 | 358 | 166 | 2 | 10 | 365 | 4 | 361 | 3.19e-136 | 393 |
| MS.gene73511.t1 | AT5G11420 | 55.623 | 329 | 145 | 1 | 38 | 365 | 30 | 358 | 2.34e-135 | 391 |
| MS.gene73511.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 38 | 365 | 29 | 357 | 1.41e-132 | 384 |
| MS.gene73511.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 38 | 365 | 29 | 357 | 1.41e-132 | 384 |
| MS.gene73511.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 50 | 365 | 1 | 317 | 5.14e-130 | 375 |
| MS.gene73511.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 50 | 365 | 1 | 317 | 5.14e-130 | 375 |
| MS.gene73511.t1 | AT1G80240 | 51.672 | 329 | 158 | 1 | 38 | 365 | 32 | 360 | 6.39e-119 | 349 |
| MS.gene73511.t1 | AT1G29980 | 40.882 | 340 | 191 | 2 | 38 | 367 | 7 | 346 | 1.54e-93 | 284 |
| MS.gene73511.t1 | AT1G29980 | 40.882 | 340 | 191 | 2 | 38 | 367 | 43 | 382 | 4.07e-93 | 285 |
| MS.gene73511.t1 | AT2G34510 | 41.071 | 336 | 192 | 2 | 38 | 367 | 43 | 378 | 1.15e-92 | 283 |
| MS.gene73511.t1 | AT2G34510 | 42.466 | 292 | 162 | 2 | 82 | 367 | 1 | 292 | 3.32e-83 | 256 |
| MS.gene73511.t1 | AT5G14150 | 27.297 | 381 | 228 | 13 | 13 | 371 | 8 | 361 | 9.64e-32 | 124 |
| MS.gene73511.t1 | AT5G14150 | 27.297 | 381 | 228 | 13 | 13 | 371 | 8 | 361 | 9.64e-32 | 124 |
Find 96 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGGTTGTGTTGAAAAT+AGG | 0.150119 | 4.4:+64443192 | None:intergenic |
| CTTTGAGTCAATGAATTTAA+TGG | 0.155305 | 4.4:+64443098 | None:intergenic |
| GTCTCTCTTTGCAGCTAATT+TGG | 0.160239 | 4.4:-64443247 | MS.gene73511:intron |
| CATACAAAGATCAATGATTT+TGG | 0.185284 | 4.4:-64442787 | MS.gene73511:CDS |
| TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4.4:-64443683 | MS.gene73511:CDS |
| CCCTTTCCAACAGATTTAAA+AGG | 0.279827 | 4.4:+64442886 | None:intergenic |
| ACAATGTATGCTCTAATATT+AGG | 0.284249 | 4.4:-64443880 | MS.gene73511:CDS |
| GACACAAGATCTTGTTGTTT+TGG | 0.296512 | 4.4:+64443156 | None:intergenic |
| TTCAAGTTGTAGACTTTGTT+TGG | 0.300419 | 4.4:+64442991 | None:intergenic |
| CATTGGTTGTGTTGAAAATA+GGG | 0.312212 | 4.4:+64443193 | None:intergenic |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4.4:+64444026 | None:intergenic |
| GCTGCTCAAAGTTCCCATTT+TGG | 0.321631 | 4.4:+64444103 | None:intergenic |
| GTTTCTGTTCATGGTGAAAA+TGG | 0.327542 | 4.4:-64444997 | None:intergenic |
| CTTCTTGAATACCAGGGTTA+TGG | 0.328613 | 4.4:+64443707 | None:intergenic |
| CTCCATTTCCATATGGTACT+TGG | 0.332485 | 4.4:+64443070 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.4:-64443767 | MS.gene73511:CDS |
| AGCATTACCTTCTGGTGACC+TGG | 0.358200 | 4.4:+64444902 | None:intergenic |
| GATCTTGTGTCACCACTTCC+TGG | 0.359851 | 4.4:-64443144 | MS.gene73511:CDS |
| TATGATTCATTACCTCTTGT+AGG | 0.362060 | 4.4:+64443625 | None:intergenic |
| TGTACCAGGTTTGACTTTGA+TGG | 0.379755 | 4.4:+64443900 | None:intergenic |
| AATGAATTTAATGGCTTTGA+GGG | 0.380586 | 4.4:+64443107 | None:intergenic |
| TTGTGTCACCACTTCCTGGC+TGG | 0.382793 | 4.4:-64443140 | MS.gene73511:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.402346 | 4.4:-64443051 | MS.gene73511:CDS |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.4:-64443784 | MS.gene73511:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.406784 | 4.4:-64442964 | MS.gene73511:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.4:-64443758 | MS.gene73511:CDS |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.4:-64443820 | MS.gene73511:CDS |
| ATAAAGAAAACAAGACTCAT+TGG | 0.436385 | 4.4:-64444063 | MS.gene73511:CDS |
| TACAACTTGAAATTCACAAT+TGG | 0.439360 | 4.4:-64442979 | MS.gene73511:CDS |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4.4:+64444027 | None:intergenic |
| CAATGAATTTAATGGCTTTG+AGG | 0.445583 | 4.4:+64443106 | None:intergenic |
| TGTAGAATGTGATTCTTGTT+CGG | 0.448271 | 4.4:+64442821 | None:intergenic |
| GGAAACATGCACTTCCCAAA+TGG | 0.453870 | 4.4:-64444041 | MS.gene73511:CDS |
| TTCCAAGTACCATATGGAAA+TGG | 0.458822 | 4.4:-64443072 | MS.gene73511:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.4:+64443982 | None:intergenic |
| AAGCATTTCCAAGTACCATA+TGG | 0.468946 | 4.4:-64443078 | MS.gene73511:CDS |
| ATCTTGAGCACAAGTTCTTG+TGG | 0.474361 | 4.4:+64443855 | None:intergenic |
| TTGAAATTCACAATTGGAGA+TGG | 0.477182 | 4.4:-64442973 | MS.gene73511:CDS |
| ATCTCTGGAGGGCCACAACC+TGG | 0.481932 | 4.4:-64443994 | MS.gene73511:CDS |
| GAAACATGCACTTCCCAAAT+GGG | 0.487880 | 4.4:-64444040 | MS.gene73511:CDS |
| GCATGAACTCCATGTGACAC+TGG | 0.490852 | 4.4:+64443958 | None:intergenic |
| TCCACTGCTCCATTTCCATA+TGG | 0.490864 | 4.4:+64443063 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4.4:-64444009 | MS.gene73511:CDS |
| TAAAGAAAACAAGACTCATT+GGG | 0.498826 | 4.4:-64444062 | MS.gene73511:CDS |
| TCAATAATCCAGCCAGGAAG+TGG | 0.503974 | 4.4:+64443132 | None:intergenic |
| GACTTTGATGGTTTGTGAGA+TGG | 0.505809 | 4.4:+64443912 | None:intergenic |
| TTACCTCTTGTAGGCATAGG+AGG | 0.508106 | 4.4:+64443634 | None:intergenic |
| GTAGGATCTTCTTGAATACC+AGG | 0.508723 | 4.4:+64443700 | None:intergenic |
| AATGGACCCTCTTCAAAGCC+GGG | 0.513053 | 4.4:+64443216 | None:intergenic |
| ATAAGACAAGTTTAAGCGAC+GGG | 0.516863 | 4.4:+64442724 | None:intergenic |
| GCATTACCTTCTGGTGACCT+GGG | 0.517202 | 4.4:+64444903 | None:intergenic |
| GAATGGACCCTCTTCAAAGC+CGG | 0.519609 | 4.4:+64443215 | None:intergenic |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4.4:-64443946 | MS.gene73511:CDS |
| TCATTACCTCTTGTAGGCAT+AGG | 0.528799 | 4.4:+64443631 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.4:-64443766 | MS.gene73511:CDS |
| CTTCCCAAATGGGAAATCAA+TGG | 0.539730 | 4.4:-64444030 | MS.gene73511:CDS |
| AGTGGAGCTTGTTGCAGGAA+GGG | 0.542398 | 4.4:-64443046 | MS.gene73511:CDS |
| CAGTGGAGCTTGTTGCAGGA+AGG | 0.550407 | 4.4:-64443047 | MS.gene73511:CDS |
| ATTAGAGCATACATTGTACC+AGG | 0.551088 | 4.4:+64443886 | None:intergenic |
| CTATAACTTGATCAAGGACC+GGG | 0.555898 | 4.4:+64442752 | None:intergenic |
| CAAACCATCAAAGTCAAACC+TGG | 0.562139 | 4.4:-64443904 | MS.gene73511:CDS |
| AGGGATTCAATAATCCAGCC+AGG | 0.562258 | 4.4:+64443126 | None:intergenic |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.4:+64443670 | None:intergenic |
| ACTATAACTTGATCAAGGAC+CGG | 0.565852 | 4.4:+64442751 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4.4:+64443976 | None:intergenic |
| GATGGAAGAAATGGATGTCA+TGG | 0.567802 | 4.4:-64442955 | MS.gene73511:CDS |
| CATGAACTCCATGTGACACT+GGG | 0.571284 | 4.4:+64443959 | None:intergenic |
| AAGAACCCCGGCTTTGAAGA+GGG | 0.580803 | 4.4:-64443222 | MS.gene73511:CDS |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.4:-64443768 | MS.gene73511:CDS |
| GGGATACTATAACTTGATCA+AGG | 0.584716 | 4.4:+64442746 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.586760 | 4.4:-64444006 | MS.gene73511:CDS |
| AAAGAACCCCGGCTTTGAAG+AGG | 0.587801 | 4.4:-64443223 | MS.gene73511:CDS |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.589619 | 4.4:+64443198 | None:intergenic |
| AAAGGAACTTCACCAGATTG+TGG | 0.591280 | 4.4:+64443808 | None:intergenic |
| GCTAATTTGGTAAAGAACCC+CGG | 0.592775 | 4.4:-64443234 | MS.gene73511:CDS |
| TGGTGGGAGTATGACACCAT+TGG | 0.597066 | 4.4:+64443176 | None:intergenic |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.4:+64443790 | None:intergenic |
| TGGATGTCATGGATCAATGA+TGG | 0.615968 | 4.4:-64442944 | MS.gene73511:CDS |
| CATTTGCTAATGTTCACCCC+AGG | 0.618831 | 4.4:-64444920 | MS.gene73511:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.4:+64443770 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4.4:-64443967 | MS.gene73511:CDS |
| CATTACCTTCTGGTGACCTG+GGG | 0.628076 | 4.4:+64444904 | None:intergenic |
| AAAGTTACATTCCATAACCC+TGG | 0.629174 | 4.4:-64443718 | MS.gene73511:CDS |
| ATTCAAGAAGATCCTACTTG+TGG | 0.631810 | 4.4:-64443694 | MS.gene73511:CDS |
| AATAAGACAAGTTTAAGCGA+CGG | 0.632333 | 4.4:+64442723 | None:intergenic |
| ACCATATGGAAATGGAGCAG+TGG | 0.640638 | 4.4:-64443064 | MS.gene73511:CDS |
| TATCCTCCTATGCCTACAAG+AGG | 0.642129 | 4.4:-64443637 | MS.gene73511:intron |
| TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4.4:+64443682 | None:intergenic |
| TAGGATCTTCTTGAATACCA+GGG | 0.651918 | 4.4:+64443701 | None:intergenic |
| ATGGACCCTCTTCAAAGCCG+GGG | 0.654789 | 4.4:+64443217 | None:intergenic |
| TAGTAGAATATATCTCTGGA+GGG | 0.660581 | 4.4:-64444005 | MS.gene73511:CDS |
| GTTCACCCCAGGTCACCAGA+AGG | 0.680013 | 4.4:-64444909 | MS.gene73511:intron |
| TCTGGAGGGCCACAACCTGG+AGG | 0.701197 | 4.4:-64443991 | MS.gene73511:CDS |
| GGAACTTCACCAGATTGTGG+AGG | 0.701281 | 4.4:+64443811 | None:intergenic |
| AAGACAAGTTTAAGCGACGG+GGG | 0.710310 | 4.4:+64442726 | None:intergenic |
| TAAGACAAGTTTAAGCGACG+GGG | 0.727938 | 4.4:+64442725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAAAAATAATGTTT+CGG | - | chr4.4:64443083-64443102 | MS.gene73511:CDS | 10.0% |
| !!! | ACATTTTTTTATTAATAACT+TGG | - | chr4.4:64443545-64443564 | MS.gene73511:intron | 10.0% |
| !!! | ATTTTTAATTTTTTCGAAAA+TGG | - | chr4.4:64443107-64443126 | MS.gene73511:CDS | 10.0% |
| !!! | TTTTTATTGTTTAAAAAATG+TGG | + | chr4.4:64443072-64443091 | None:intergenic | 10.0% |
| !! | TATCAAATTATTAACAATGT+TGG | - | chr4.4:64444278-64444297 | MS.gene73511:intron | 15.0% |
| !!! | TTGTTTTCTTTATGTATTTT+GGG | + | chr4.4:64443652-64443671 | None:intergenic | 15.0% |
| !!! | TTTTCAAAAATTGGAAAATA+TGG | - | chr4.4:64443138-64443157 | MS.gene73511:CDS | 15.0% |
| !! | AATAAAAAAATGTAGAGCAT+AGG | + | chr4.4:64443538-64443557 | None:intergenic | 20.0% |
| !! | TCATAATCATATTATTAGCA+CGG | + | chr4.4:64444339-64444358 | None:intergenic | 20.0% |
| !! | TGTTTAATAAGACTAAAACA+TGG | - | chr4.4:64444453-64444472 | MS.gene73511:intron | 20.0% |
| !!! | CTTGTTTTCTTTATGTATTT+TGG | + | chr4.4:64443653-64443672 | None:intergenic | 20.0% |
| !!! | GTAGATCTATTTTCAAAAAT+TGG | - | chr4.4:64443129-64443148 | MS.gene73511:CDS | 20.0% |
| !!! | TTCATTTTAAATTGCTAACA+AGG | - | chr4.4:64442983-64443002 | MS.gene73511:CDS | 20.0% |
| !!! | TTCGTTTTTTGATTCAAATA+GGG | - | chr4.4:64444418-64444437 | MS.gene73511:intron | 20.0% |
| !!! | TTTCGTTTTTTGATTCAAAT+AGG | - | chr4.4:64444417-64444436 | MS.gene73511:intron | 20.0% |
| ! | AAAATATGGAGGAAAAATGT+TGG | - | chr4.4:64443152-64443171 | MS.gene73511:CDS | 25.0% |
| ! | ACAATGTATGCTCTAATATT+AGG | - | chr4.4:64443842-64443861 | MS.gene73511:CDS | 25.0% |
| ! | ATAAAGAAAACAAGACTCAT+TGG | - | chr4.4:64443659-64443678 | MS.gene73511:CDS | 25.0% |
| ! | CCACTTCAACTAATAAATAT+AGG | + | chr4.4:64443189-64443208 | None:intergenic | 25.0% |
| ! | CCTATATTTATTAGTTGAAG+TGG | - | chr4.4:64443186-64443205 | MS.gene73511:CDS | 25.0% |
| ! | CTTTGAGTCAATGAATTTAA+TGG | + | chr4.4:64444627-64444646 | None:intergenic | 25.0% |
| ! | TAAAGAAAACAAGACTCATT+GGG | - | chr4.4:64443660-64443679 | MS.gene73511:CDS | 25.0% |
| ! | TACAACTTGAAATTCACAAT+TGG | - | chr4.4:64444743-64444762 | MS.gene73511:intron | 25.0% |
| ! | TATATATTAAGAAGTCACAC+TGG | + | chr4.4:64443376-64443395 | None:intergenic | 25.0% |
| ! | TCAAAAATTGGAAAATATGG+AGG | - | chr4.4:64443141-64443160 | MS.gene73511:CDS | 25.0% |
| ! | TTAACTATGATATGCTTAAG+TGG | - | chr4.4:64443495-64443514 | MS.gene73511:intron | 25.0% |
| !! | AAAGTTCCTTTTAAATCTGT+TGG | - | chr4.4:64444830-64444849 | MS.gene73511:intron | 25.0% |
| !! | ATCAAAGTTTTCTTCCAAAA+TGG | - | chr4.4:64443605-64443624 | MS.gene73511:intron | 25.0% |
| !! | CATACAAAGATCAATGATTT+TGG | - | chr4.4:64444935-64444954 | MS.gene73511:CDS | 25.0% |
| !! | GTTTGAAACAAATATGTGTT+AGG | + | chr4.4:64443253-64443272 | None:intergenic | 25.0% |
| !! | TCAAAGTTTTCTTCCAAAAT+GGG | - | chr4.4:64443606-64443625 | MS.gene73511:intron | 25.0% |
| !!! | AATGAATTTAATGGCTTTGA+GGG | + | chr4.4:64444618-64444637 | None:intergenic | 25.0% |
| !!! | TTCTTTATGTATTTTGGGTT+TGG | + | chr4.4:64443647-64443666 | None:intergenic | 25.0% |
| ATGTAGAGAATCTAGATTCA+TGG | + | chr4.4:64444126-64444145 | None:intergenic | 30.0% | |
| ATTCTCTACATTACAGTCAT+AGG | - | chr4.4:64444135-64444154 | MS.gene73511:intron | 30.0% | |
| CACATAAGTCACTGTAATTA+TGG | + | chr4.4:64444254-64444273 | None:intergenic | 30.0% | |
| GAAATTCTGATCCTAAATGT+TGG | - | chr4.4:64443574-64443593 | MS.gene73511:intron | 30.0% | |
| GATGAAGAAAACCAACATTT+AGG | + | chr4.4:64443588-64443607 | None:intergenic | 30.0% | |
| TAGTAGAATATATCTCTGGA+GGG | - | chr4.4:64443717-64443736 | MS.gene73511:CDS | 30.0% | |
| TATGATTCATTACCTCTTGT+AGG | + | chr4.4:64444100-64444119 | None:intergenic | 30.0% | |
| TCATATTATTAGCACGGATA+CGG | + | chr4.4:64444333-64444352 | None:intergenic | 30.0% | |
| TGTAGAATGTGATTCTTGTT+CGG | + | chr4.4:64444904-64444923 | None:intergenic | 30.0% | |
| TTGAAATTCACAATTGGAGA+TGG | - | chr4.4:64444749-64444768 | MS.gene73511:intron | 30.0% | |
| ! | AAAGTTTGTTTCGTTGAGAT+TGG | + | chr4.4:64444167-64444186 | None:intergenic | 30.0% |
| ! | AATGATTTTGGACATATGTG+CGG | - | chr4.4:64444947-64444966 | MS.gene73511:CDS | 30.0% |
| ! | CAATGAATTTAATGGCTTTG+AGG | + | chr4.4:64444619-64444638 | None:intergenic | 30.0% |
| ! | CATTGGTTGTGTTGAAAATA+GGG | + | chr4.4:64444532-64444551 | None:intergenic | 30.0% |
| ! | CCTTTTAAATCTGTTGGAAA+GGG | - | chr4.4:64444836-64444855 | MS.gene73511:intron | 30.0% |
| ! | TCCTTTTAAATCTGTTGGAA+AGG | - | chr4.4:64444835-64444854 | MS.gene73511:intron | 30.0% |
| !! | TTCAAGTTGTAGACTTTGTT+TGG | + | chr4.4:64444734-64444753 | None:intergenic | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.4:64444004-64444023 | MS.gene73511:CDS | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.4:64443955-64443974 | None:intergenic | 35.0% | |
| AAGCATTTCCAAGTACCATA+TGG | - | chr4.4:64444644-64444663 | MS.gene73511:intron | 35.0% | |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.4:64444758-64444777 | MS.gene73511:intron | 35.0% | |
| ACTATAACTTGATCAAGGAC+CGG | + | chr4.4:64444974-64444993 | None:intergenic | 35.0% | |
| ATTAGAGCATACATTGTACC+AGG | + | chr4.4:64443839-64443858 | None:intergenic | 35.0% | |
| ATTCAAGAAGATCCTACTTG+TGG | - | chr4.4:64444028-64444047 | MS.gene73511:CDS | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.4:64443938-64443957 | MS.gene73511:CDS | 35.0% | |
| CCCTTTCCAACAGATTTAAA+AGG | + | chr4.4:64444839-64444858 | None:intergenic | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | - | chr4.4:64443716-64443735 | MS.gene73511:CDS | 35.0% | |
| CTATAGGTGAGGTAATCTAT+AGG | + | chr4.4:64443327-64443346 | None:intergenic | 35.0% | |
| CTGTAATTATGGAATGTCTG+AGG | + | chr4.4:64444243-64444262 | None:intergenic | 35.0% | |
| GGGATACTATAACTTGATCA+AGG | + | chr4.4:64444979-64444998 | None:intergenic | 35.0% | |
| GGTCTAGTAGAATATATCTC+TGG | - | chr4.4:64443713-64443732 | MS.gene73511:CDS | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | + | chr4.4:64444527-64444546 | None:intergenic | 35.0% | |
| TAGGATCTTCTTGAATACCA+GGG | + | chr4.4:64444024-64444043 | None:intergenic | 35.0% | |
| TCGACATGTCAATATAATGG+CGG | - | chr4.4:64443439-64443458 | MS.gene73511:intron | 35.0% | |
| TTACCTCACCTATAGATTGA+AGG | - | chr4.4:64443332-64443351 | MS.gene73511:intron | 35.0% | |
| TTCCAAGTACCATATGGAAA+TGG | - | chr4.4:64444650-64444669 | MS.gene73511:intron | 35.0% | |
| ! | AAATATGTGTTAGGTTGCGT+AGG | + | chr4.4:64443244-64443263 | None:intergenic | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.4:64443956-64443975 | MS.gene73511:CDS | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.4:64443935-64443954 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.4:64443955-64443974 | MS.gene73511:CDS | 35.0% |
| ! | CCATTGGTTGTGTTGAAAAT+AGG | + | chr4.4:64444533-64444552 | None:intergenic | 35.0% |
| ! | CCTATTTTCAACACAACCAA+TGG | - | chr4.4:64444530-64444549 | MS.gene73511:intron | 35.0% |
| ! | GTGTCGACATGTCAATATAA+TGG | - | chr4.4:64443436-64443455 | MS.gene73511:intron | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.4:64443954-64443973 | MS.gene73511:CDS | 35.0% |
| !! | AGACCATTGATTTCCCATTT+GGG | + | chr4.4:64443698-64443717 | None:intergenic | 35.0% |
| !! | CTATAGATTGAAGGTGTCTA+CGG | - | chr4.4:64443341-64443360 | MS.gene73511:intron | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | + | chr4.4:64443699-64443718 | None:intergenic | 35.0% |
| !!! | ACAAGATCTTGTTGTTTTGG+TGG | + | chr4.4:64444566-64444585 | None:intergenic | 35.0% |
| !!! | CAAGATCTTGTTGTTTTGGT+GGG | + | chr4.4:64444565-64444584 | None:intergenic | 35.0% |
| !!! | GACACAAGATCTTGTTGTTT+TGG | + | chr4.4:64444569-64444588 | None:intergenic | 35.0% |
| AAAGGAACTTCACCAGATTG+TGG | + | chr4.4:64443917-64443936 | None:intergenic | 40.0% | |
| AACAGACACAACACGGATAT+TGG | + | chr4.4:64444308-64444327 | None:intergenic | 40.0% | |
| ACACCTTCAATCTATAGGTG+AGG | + | chr4.4:64443338-64443357 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.4:64444055-64444074 | None:intergenic | 40.0% | |
| ATCTTGAGCACAAGTTCTTG+TGG | + | chr4.4:64443870-64443889 | None:intergenic | 40.0% | |
| CAAACCATCAAAGTCAAACC+TGG | - | chr4.4:64443818-64443837 | MS.gene73511:CDS | 40.0% | |
| CGACATGTCAATATAATGGC+GGG | - | chr4.4:64443440-64443459 | MS.gene73511:intron | 40.0% | |
| CGTAGACACCTTCAATCTAT+AGG | + | chr4.4:64443343-64443362 | None:intergenic | 40.0% | |
| CTATAACTTGATCAAGGACC+GGG | + | chr4.4:64444973-64444992 | None:intergenic | 40.0% | |
| CTCCATTTCCATATGGTACT+TGG | + | chr4.4:64444655-64444674 | None:intergenic | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | - | chr4.4:64443692-64443711 | MS.gene73511:CDS | 40.0% | |
| CTTCTTGAATACCAGGGTTA+TGG | + | chr4.4:64444018-64444037 | None:intergenic | 40.0% | |
| GAAACATGCACTTCCCAAAT+GGG | - | chr4.4:64443682-64443701 | MS.gene73511:CDS | 40.0% | |
| GATGGAAGAAATGGATGTCA+TGG | - | chr4.4:64444767-64444786 | MS.gene73511:intron | 40.0% | |
| GCTAATTTGGTAAAGAACCC+CGG | - | chr4.4:64444488-64444507 | MS.gene73511:intron | 40.0% | |
| GTAGGATCTTCTTGAATACC+AGG | + | chr4.4:64444025-64444044 | None:intergenic | 40.0% | |
| GTCTCTCTTTGCAGCTAATT+TGG | - | chr4.4:64444475-64444494 | MS.gene73511:intron | 40.0% | |
| TAGAGTTGAGCATTACCTTC+TGG | + | chr4.4:64442831-64442850 | None:intergenic | 40.0% | |
| TCATTACCTCTTGTAGGCAT+AGG | + | chr4.4:64444094-64444113 | None:intergenic | 40.0% | |
| TGGATGTCATGGATCAATGA+TGG | - | chr4.4:64444778-64444797 | MS.gene73511:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.4:64443964-64443983 | MS.gene73511:CDS | 40.0% | |
| TTAAGAAGTCACACTGGTGT+CGG | + | chr4.4:64443370-64443389 | None:intergenic | 40.0% | |
| ! | GACTTTGATGGTTTGTGAGA+TGG | + | chr4.4:64443813-64443832 | None:intergenic | 40.0% |
| ! | TGTACCAGGTTTGACTTTGA+TGG | + | chr4.4:64443825-64443844 | None:intergenic | 40.0% |
| ACCATATGGAAATGGAGCAG+TGG | - | chr4.4:64444658-64444677 | MS.gene73511:intron | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | + | chr4.4:64444599-64444618 | None:intergenic | 45.0% | |
| ATGTTCTTCCCAGTGTCACA+TGG | - | chr4.4:64443755-64443774 | MS.gene73511:CDS | 45.0% | |
| CATGAACTCCATGTGACACT+GGG | + | chr4.4:64443766-64443785 | None:intergenic | 45.0% | |
| GGAAACATGCACTTCCCAAA+TGG | - | chr4.4:64443681-64443700 | MS.gene73511:CDS | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4.4:64443776-64443795 | MS.gene73511:CDS | 45.0% | |
| GGTGAGGTAATCTATAGGTG+AGG | + | chr4.4:64443322-64443341 | None:intergenic | 45.0% | |
| TACGGACAACAGACACAACA+CGG | + | chr4.4:64444315-64444334 | None:intergenic | 45.0% | |
| TATCCTCCTATGCCTACAAG+AGG | - | chr4.4:64444085-64444104 | MS.gene73511:CDS | 45.0% | |
| TCAATAATCCAGCCAGGAAG+TGG | + | chr4.4:64444593-64444612 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.4:64444043-64444062 | None:intergenic | 45.0% | |
| TCCACTGCTCCATTTCCATA+TGG | + | chr4.4:64444662-64444681 | None:intergenic | 45.0% | |
| TTACCTCTTGTAGGCATAGG+AGG | + | chr4.4:64444091-64444110 | None:intergenic | 45.0% | |
| ! | CATTTGCTAATGTTCACCCC+AGG | - | chr4.4:64442802-64442821 | MS.gene73511:CDS | 45.0% |
| ! | GCTGCTCAAAGTTCCCATTT+TGG | + | chr4.4:64443622-64443641 | None:intergenic | 45.0% |
| ! | TCCTACTTGTGGTCCACTTT+TGG | - | chr4.4:64444039-64444058 | MS.gene73511:CDS | 45.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.4:64443743-64443762 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+GGG | + | chr4.4:64444509-64444528 | None:intergenic | 50.0% | |
| AGCATTACCTTCTGGTGACC+TGG | + | chr4.4:64442823-64442842 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.4:64443902-64443921 | MS.gene73511:CDS | 50.0% | |
| CATTACCTTCTGGTGACCTG+GGG | + | chr4.4:64442821-64442840 | None:intergenic | 50.0% | |
| GAATGGACCCTCTTCAAAGC+CGG | + | chr4.4:64444510-64444529 | None:intergenic | 50.0% | |
| GATCTTGTGTCACCACTTCC+TGG | - | chr4.4:64444578-64444597 | MS.gene73511:intron | 50.0% | |
| GCATGAACTCCATGTGACAC+TGG | + | chr4.4:64443767-64443786 | None:intergenic | 50.0% | |
| GCATTACCTTCTGGTGACCT+GGG | + | chr4.4:64442822-64442841 | None:intergenic | 50.0% | |
| GGAACTTCACCAGATTGTGG+AGG | + | chr4.4:64443914-64443933 | None:intergenic | 50.0% | |
| ! | TGGTGGGAGTATGACACCAT+TGG | + | chr4.4:64444549-64444568 | None:intergenic | 50.0% |
| ! | TTTTGGACATATGTGCGGCC+CGG | - | chr4.4:64444952-64444971 | MS.gene73511:CDS | 50.0% |
| !! | AAAGAACCCCGGCTTTGAAG+AGG | - | chr4.4:64444499-64444518 | MS.gene73511:intron | 50.0% |
| !! | AAGAACCCCGGCTTTGAAGA+GGG | - | chr4.4:64444500-64444519 | MS.gene73511:intron | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGAA+GGG | - | chr4.4:64444676-64444695 | MS.gene73511:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.4:64443749-64443768 | None:intergenic | 55.0% | |
| ATGGACCCTCTTCAAAGCCG+GGG | + | chr4.4:64444508-64444527 | None:intergenic | 55.0% | |
| TTGTGTCACCACTTCCTGGC+TGG | - | chr4.4:64444582-64444601 | MS.gene73511:intron | 55.0% | |
| !! | CAGTGGAGCTTGTTGCAGGA+AGG | - | chr4.4:64444675-64444694 | MS.gene73511:intron | 55.0% |
| !! | GTCTGAGGAGTGTCTGTGAG+TGG | + | chr4.4:64444228-64444247 | None:intergenic | 55.0% |
| GTTCACCCCAGGTCACCAGA+AGG | - | chr4.4:64442813-64442832 | MS.gene73511:CDS | 60.0% | |
| ! | ATCTCTGGAGGGCCACAACC+TGG | - | chr4.4:64443728-64443747 | MS.gene73511:CDS | 60.0% |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.4:64444671-64444690 | MS.gene73511:intron | 60.0% |
| TCTGGAGGGCCACAACCTGG+AGG | - | chr4.4:64443731-64443750 | MS.gene73511:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 64442735 | 64445009 | 64442735 | ID=MS.gene73511 |
| chr4.4 | mRNA | 64442735 | 64445009 | 64442735 | ID=MS.gene73511.t1;Parent=MS.gene73511 |
| chr4.4 | exon | 64444910 | 64445009 | 64444910 | ID=MS.gene73511.t1.exon1;Parent=MS.gene73511.t1 |
| chr4.4 | CDS | 64444910 | 64445009 | 64444910 | ID=cds.MS.gene73511.t1;Parent=MS.gene73511.t1 |
| chr4.4 | exon | 64443638 | 64444132 | 64443638 | ID=MS.gene73511.t1.exon2;Parent=MS.gene73511.t1 |
| chr4.4 | CDS | 64443638 | 64444132 | 64443638 | ID=cds.MS.gene73511.t1;Parent=MS.gene73511.t1 |
| chr4.4 | exon | 64442735 | 64443255 | 64442735 | ID=MS.gene73511.t1.exon3;Parent=MS.gene73511.t1 |
| chr4.4 | CDS | 64442735 | 64443255 | 64442735 | ID=cds.MS.gene73511.t1;Parent=MS.gene73511.t1 |
| Gene Sequence |
| Protein sequence |
