Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050725.t1 | XP_003626098.1 | 97 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 1.40E-129 | 472.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050725.t1 | Q9ZSI1 | 76.1 | 230 | 54 | 1 | 1 | 229 | 1 | 230 | 2.7e-102 | 372.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050725.t1 | G7KVH3 | 97.0 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 9.8e-130 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene050725 | 0.947955 | 2.45E-106 | -1.69E-46 |
| MS.gene050722 | MS.gene050725 | 0.965838 | 3.97E-125 | -1.69E-46 |
| MS.gene050723 | MS.gene050725 | 0.878539 | 2.59E-69 | -1.69E-46 |
| MS.gene050725 | MS.gene050726 | 0.86561 | 5.21E-65 | -1.69E-46 |
| MS.gene050725 | MS.gene050822 | 0.860821 | 1.58E-63 | -1.69E-46 |
| MS.gene050725 | MS.gene050823 | 0.886878 | 2.33E-72 | -1.69E-46 |
| MS.gene050725 | MS.gene056680 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene050725 | MS.gene058603 | 0.806447 | 8.19E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene063912 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene066602 | 0.816522 | 5.30E-52 | -1.69E-46 |
| MS.gene050725 | MS.gene070947 | 0.804917 | 1.72E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene072622 | 0.935363 | 9.54E-97 | -1.69E-46 |
| MS.gene050725 | MS.gene072623 | 0.974383 | 4.65E-138 | -1.69E-46 |
| MS.gene050725 | MS.gene072625 | 0.933922 | 8.94E-96 | -1.69E-46 |
| MS.gene050725 | MS.gene072626 | 0.977206 | 2.55E-143 | -1.69E-46 |
| MS.gene050725 | MS.gene072628 | 0.930837 | 9.15E-94 | -1.69E-46 |
| MS.gene050725 | MS.gene072629 | 0.977233 | 2.26E-143 | -1.69E-46 |
| MS.gene050725 | MS.gene072664 | 0.806351 | 8.58E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene28619 | 0.86137 | 1.08E-63 | -1.69E-46 |
| MS.gene050725 | MS.gene28620 | 0.893462 | 6.15E-75 | -1.69E-46 |
| MS.gene050725 | MS.gene30918 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene050725 | MS.gene40846 | 0.807114 | 5.92E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene45038 | 0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene47437 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene55078 | 0.81606 | 6.72E-52 | -1.69E-46 |
| MS.gene050725 | MS.gene59920 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene60913 | 0.810038 | 1.41E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene65948 | 0.806801 | 6.89E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene67145 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene69635 | 0.812999 | 3.20E-51 | -1.69E-46 |
| MS.gene050725 | MS.gene73511 | 0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene050725 | MS.gene74565 | 0.805743 | 1.15E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene78663 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene88365 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene90407 | 0.806276 | 8.90E-50 | -1.69E-46 |
| MS.gene050725 | MS.gene91223 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene91226 | 0.805114 | 1.56E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene95804 | 0.800052 | 1.73E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050725.t1 | MTR_7g111010 | 96.957 | 230 | 7 | 0 | 1 | 230 | 1 | 230 | 4.05e-170 | 469 |
| MS.gene050725.t1 | MTR_7g110990 | 91.739 | 230 | 4 | 1 | 1 | 230 | 1 | 215 | 9.37e-156 | 432 |
| MS.gene050725.t1 | MTR_1g085460 | 87.500 | 216 | 27 | 0 | 15 | 230 | 18 | 233 | 1.58e-144 | 404 |
| MS.gene050725.t1 | MTR_1g026020 | 63.717 | 226 | 81 | 1 | 4 | 229 | 6 | 230 | 1.24e-107 | 310 |
| MS.gene050725.t1 | MTR_2g097030 | 58.333 | 240 | 92 | 4 | 1 | 235 | 4 | 240 | 1.23e-98 | 288 |
| MS.gene050725.t1 | MTR_5g075320 | 59.657 | 233 | 85 | 4 | 8 | 235 | 5 | 233 | 1.49e-98 | 287 |
| MS.gene050725.t1 | MTR_7g061720 | 58.750 | 240 | 90 | 5 | 1 | 234 | 1 | 237 | 1.57e-97 | 285 |
| MS.gene050725.t1 | MTR_5g079950 | 59.504 | 242 | 88 | 5 | 1 | 235 | 1 | 239 | 2.51e-97 | 285 |
| MS.gene050725.t1 | MTR_3g435430 | 66.667 | 204 | 64 | 3 | 27 | 230 | 25 | 224 | 2.03e-96 | 282 |
| MS.gene050725.t1 | MTR_3g094040 | 60.793 | 227 | 84 | 4 | 5 | 230 | 8 | 230 | 2.71e-96 | 282 |
| MS.gene050725.t1 | MTR_3g094060 | 65.686 | 204 | 66 | 3 | 27 | 230 | 31 | 230 | 3.48e-96 | 281 |
| MS.gene050725.t1 | MTR_5g041700 | 65.385 | 208 | 68 | 3 | 27 | 234 | 25 | 228 | 5.80e-96 | 281 |
| MS.gene050725.t1 | MTR_4g081950 | 65.385 | 208 | 68 | 3 | 27 | 234 | 61 | 264 | 1.90e-95 | 281 |
| MS.gene050725.t1 | MTR_7g011060 | 61.572 | 229 | 74 | 5 | 9 | 235 | 6 | 222 | 6.70e-94 | 275 |
| MS.gene050725.t1 | MTR_4g063975 | 58.667 | 225 | 85 | 4 | 1 | 220 | 2 | 223 | 1.93e-93 | 275 |
| MS.gene050725.t1 | MTR_3g466790 | 58.874 | 231 | 91 | 3 | 5 | 235 | 10 | 236 | 1.29e-91 | 270 |
| MS.gene050725.t1 | MTR_3g466760 | 58.442 | 231 | 92 | 3 | 5 | 235 | 16 | 242 | 7.05e-90 | 266 |
| MS.gene050725.t1 | MTR_6g012520 | 64.593 | 209 | 62 | 4 | 27 | 235 | 28 | 224 | 3.93e-84 | 251 |
| MS.gene050725.t1 | MTR_5g011210 | 49.573 | 234 | 109 | 4 | 4 | 232 | 10 | 239 | 2.90e-80 | 241 |
| MS.gene050725.t1 | MTR_4g102450 | 50.862 | 232 | 107 | 3 | 5 | 232 | 10 | 238 | 3.98e-80 | 241 |
| MS.gene050725.t1 | MTR_7g013120 | 49.776 | 223 | 104 | 4 | 9 | 230 | 14 | 229 | 3.77e-78 | 236 |
| MS.gene050725.t1 | MTR_4g124340 | 52.195 | 205 | 93 | 3 | 27 | 230 | 61 | 261 | 9.86e-78 | 236 |
| MS.gene050725.t1 | MTR_7g013150 | 50.000 | 228 | 105 | 5 | 4 | 230 | 10 | 229 | 6.66e-75 | 228 |
| MS.gene050725.t1 | MTR_7g013140 | 51.570 | 223 | 102 | 4 | 9 | 230 | 10 | 227 | 1.36e-74 | 226 |
| MS.gene050725.t1 | MTR_8g464350 | 48.908 | 229 | 104 | 5 | 10 | 230 | 7 | 230 | 2.36e-72 | 221 |
| MS.gene050725.t1 | MTR_8g058990 | 50.732 | 205 | 95 | 4 | 27 | 230 | 30 | 229 | 5.03e-69 | 213 |
| MS.gene050725.t1 | MTR_0040s0140 | 45.339 | 236 | 125 | 3 | 1 | 235 | 6 | 238 | 8.67e-67 | 207 |
| MS.gene050725.t1 | MTR_2g090255 | 44.492 | 236 | 125 | 4 | 1 | 235 | 4 | 234 | 2.90e-64 | 200 |
| MS.gene050725.t1 | MTR_5g076950 | 46.919 | 211 | 105 | 3 | 27 | 235 | 41 | 246 | 9.57e-63 | 197 |
| MS.gene050725.t1 | MTR_3g064510 | 45.581 | 215 | 110 | 5 | 27 | 235 | 53 | 266 | 7.98e-59 | 187 |
| MS.gene050725.t1 | MTR_6g012500 | 57.831 | 83 | 34 | 1 | 153 | 235 | 181 | 262 | 3.96e-25 | 100 |
| MS.gene050725.t1 | MTR_2g090270 | 30.233 | 215 | 124 | 8 | 27 | 230 | 35 | 234 | 8.37e-24 | 96.3 |
| MS.gene050725.t1 | MTR_0008s0120 | 31.579 | 228 | 95 | 7 | 4 | 230 | 8 | 175 | 4.92e-23 | 92.8 |
| MS.gene050725.t1 | MTR_2g090265 | 29.508 | 244 | 142 | 10 | 2 | 230 | 4 | 232 | 1.13e-22 | 93.2 |
| MS.gene050725.t1 | MTR_0122s0020 | 32.474 | 194 | 105 | 9 | 27 | 209 | 41 | 219 | 8.87e-20 | 85.5 |
| MS.gene050725.t1 | MTR_4g028640 | 30.732 | 205 | 109 | 9 | 17 | 209 | 32 | 215 | 9.08e-19 | 82.8 |
| MS.gene050725.t1 | MTR_4g099370 | 27.426 | 237 | 143 | 10 | 5 | 233 | 11 | 226 | 2.62e-18 | 81.3 |
| MS.gene050725.t1 | MTR_0809s0010 | 30.457 | 197 | 105 | 9 | 27 | 210 | 47 | 224 | 2.60e-17 | 79.0 |
| MS.gene050725.t1 | MTR_0118s0070 | 31.250 | 192 | 104 | 8 | 32 | 210 | 53 | 229 | 2.97e-17 | 79.0 |
| MS.gene050725.t1 | MTR_5g013440 | 26.872 | 227 | 143 | 10 | 5 | 226 | 12 | 220 | 1.80e-16 | 76.3 |
| MS.gene050725.t1 | MTR_4g075790 | 31.280 | 211 | 121 | 10 | 28 | 231 | 24 | 217 | 2.78e-15 | 73.2 |
| MS.gene050725.t1 | MTR_0122s0020 | 31.818 | 176 | 94 | 9 | 27 | 191 | 41 | 201 | 4.00e-14 | 69.3 |
| MS.gene050725.t1 | MTR_1g085365 | 84.848 | 33 | 5 | 0 | 198 | 230 | 4 | 36 | 3.37e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050725.t1 | AT4G01630 | 76.087 | 230 | 54 | 1 | 1 | 229 | 1 | 230 | 1.70e-132 | 374 |
| MS.gene050725.t1 | AT5G05290 | 59.052 | 232 | 86 | 3 | 10 | 235 | 9 | 237 | 9.62e-100 | 291 |
| MS.gene050725.t1 | AT1G20190 | 68.342 | 199 | 62 | 1 | 31 | 229 | 30 | 227 | 1.97e-99 | 290 |
| MS.gene050725.t1 | AT2G40610 | 60.538 | 223 | 85 | 2 | 8 | 230 | 11 | 230 | 9.37e-98 | 285 |
| MS.gene050725.t1 | AT1G69530 | 66.667 | 204 | 64 | 3 | 27 | 230 | 27 | 226 | 3.53e-97 | 285 |
| MS.gene050725.t1 | AT1G69530 | 66.667 | 204 | 64 | 3 | 27 | 230 | 27 | 226 | 4.56e-97 | 284 |
| MS.gene050725.t1 | AT1G69530 | 66.667 | 204 | 64 | 3 | 27 | 230 | 27 | 226 | 4.56e-97 | 284 |
| MS.gene050725.t1 | AT2G28950 | 60.262 | 229 | 81 | 5 | 1 | 224 | 3 | 226 | 2.73e-95 | 279 |
| MS.gene050725.t1 | AT2G03090 | 63.462 | 208 | 72 | 3 | 27 | 234 | 30 | 233 | 1.04e-94 | 278 |
| MS.gene050725.t1 | AT5G56320 | 57.826 | 230 | 93 | 3 | 5 | 234 | 7 | 232 | 3.40e-94 | 276 |
| MS.gene050725.t1 | AT5G56320 | 57.826 | 230 | 93 | 3 | 5 | 234 | 7 | 232 | 3.40e-94 | 276 |
| MS.gene050725.t1 | AT3G55500 | 57.384 | 237 | 93 | 4 | 4 | 235 | 7 | 240 | 3.85e-94 | 276 |
| MS.gene050725.t1 | AT5G02260 | 56.540 | 237 | 95 | 4 | 3 | 234 | 4 | 237 | 4.15e-94 | 276 |
| MS.gene050725.t1 | AT2G39700 | 63.033 | 211 | 74 | 3 | 26 | 235 | 30 | 237 | 7.24e-94 | 276 |
| MS.gene050725.t1 | AT5G56320 | 57.826 | 230 | 93 | 3 | 5 | 234 | 7 | 232 | 2.21e-93 | 276 |
| MS.gene050725.t1 | AT2G37640 | 63.333 | 210 | 73 | 3 | 27 | 235 | 36 | 242 | 2.63e-93 | 275 |
| MS.gene050725.t1 | AT3G29030 | 53.279 | 244 | 90 | 4 | 5 | 235 | 3 | 235 | 3.25e-90 | 266 |
| MS.gene050725.t1 | AT1G69530 | 63.547 | 203 | 68 | 4 | 27 | 229 | 27 | 223 | 2.24e-89 | 264 |
| MS.gene050725.t1 | AT1G69530 | 65.641 | 195 | 61 | 4 | 27 | 221 | 27 | 215 | 5.53e-89 | 262 |
| MS.gene050725.t1 | AT1G26770 | 59.649 | 228 | 88 | 3 | 8 | 235 | 7 | 230 | 2.56e-88 | 261 |
| MS.gene050725.t1 | AT1G26770 | 59.649 | 228 | 88 | 3 | 8 | 235 | 17 | 240 | 3.68e-88 | 261 |
| MS.gene050725.t1 | AT3G15370 | 52.381 | 231 | 102 | 3 | 1 | 230 | 3 | 226 | 2.36e-82 | 246 |
| MS.gene050725.t1 | AT2G37640 | 60.104 | 193 | 73 | 3 | 44 | 235 | 28 | 217 | 6.73e-80 | 239 |
| MS.gene050725.t1 | AT1G20190 | 65.476 | 168 | 57 | 1 | 62 | 229 | 2 | 168 | 9.81e-79 | 235 |
| MS.gene050725.t1 | AT1G12560 | 56.061 | 198 | 83 | 3 | 27 | 224 | 37 | 230 | 3.01e-77 | 234 |
| MS.gene050725.t1 | AT3G15370 | 46.360 | 261 | 102 | 4 | 1 | 230 | 3 | 256 | 1.40e-75 | 230 |
| MS.gene050725.t1 | AT1G62980 | 49.333 | 225 | 109 | 4 | 1 | 224 | 5 | 225 | 2.28e-74 | 226 |
| MS.gene050725.t1 | AT5G39310 | 51.675 | 209 | 95 | 4 | 21 | 229 | 84 | 286 | 5.75e-73 | 224 |
| MS.gene050725.t1 | AT5G39270 | 53.202 | 203 | 89 | 4 | 27 | 229 | 58 | 254 | 2.00e-72 | 222 |
| MS.gene050725.t1 | AT5G39290 | 52.709 | 203 | 90 | 4 | 27 | 229 | 58 | 254 | 6.78e-71 | 218 |
| MS.gene050725.t1 | AT5G39300 | 51.724 | 203 | 92 | 4 | 27 | 229 | 55 | 251 | 1.14e-70 | 218 |
| MS.gene050725.t1 | AT5G39280 | 51.232 | 203 | 93 | 4 | 27 | 229 | 54 | 250 | 3.65e-70 | 216 |
| MS.gene050725.t1 | AT4G38210 | 44.538 | 238 | 123 | 5 | 1 | 235 | 5 | 236 | 1.20e-63 | 199 |
| MS.gene050725.t1 | AT3G03220 | 45.024 | 211 | 109 | 3 | 27 | 235 | 40 | 245 | 4.87e-61 | 192 |
| MS.gene050725.t1 | AT5G39260 | 47.087 | 206 | 97 | 5 | 25 | 229 | 43 | 237 | 6.33e-55 | 177 |
| MS.gene050725.t1 | AT4G28250 | 31.839 | 223 | 123 | 8 | 1 | 209 | 7 | 214 | 7.09e-26 | 102 |
| MS.gene050725.t1 | AT2G20750 | 33.184 | 223 | 118 | 9 | 6 | 209 | 11 | 221 | 3.06e-25 | 100 |
| MS.gene050725.t1 | AT4G28250 | 30.631 | 222 | 121 | 8 | 1 | 209 | 7 | 208 | 1.50e-22 | 92.8 |
| MS.gene050725.t1 | AT1G65680 | 32.110 | 218 | 119 | 11 | 27 | 230 | 47 | 249 | 5.78e-20 | 86.3 |
| MS.gene050725.t1 | AT2G20750 | 32.683 | 205 | 107 | 9 | 6 | 191 | 11 | 203 | 1.24e-19 | 84.3 |
| MS.gene050725.t1 | AT2G45110 | 33.180 | 217 | 111 | 10 | 30 | 231 | 36 | 233 | 7.24e-18 | 80.5 |
| MS.gene050725.t1 | AT4G28250 | 29.665 | 209 | 114 | 8 | 1 | 196 | 7 | 195 | 1.56e-17 | 78.6 |
| MS.gene050725.t1 | AT4G28250 | 29.902 | 204 | 110 | 8 | 1 | 191 | 7 | 190 | 9.04e-17 | 76.3 |
| MS.gene050725.t1 | AT4G17030 | 25.118 | 211 | 143 | 6 | 1 | 207 | 1 | 200 | 1.05e-13 | 68.9 |
| MS.gene050725.t1 | AT3G60570 | 28.191 | 188 | 106 | 7 | 27 | 201 | 34 | 205 | 2.23e-12 | 65.1 |
Find 0 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTAAAGTAACAC+CGG | - | 50571:6161-6180 | MS.gene050725:CDS | 15.0% |
| !! | AACATAAGATTTACCATAAA+TGG | - | 50571:6389-6408 | MS.gene050725:intron | 20.0% |
| !! | ACATAAGATTTACCATAAAT+GGG | - | 50571:6390-6409 | MS.gene050725:intron | 20.0% |
| !! | TTAGAATTCAACTCAAAAAT+GGG | - | 50571:6576-6595 | MS.gene050725:CDS | 20.0% |
| !!! | ATTTCTAAAGTTTGGATAAA+AGG | - | 50571:6464-6483 | MS.gene050725:intron | 20.0% |
| !!! | CTTTATTTTGATTAACTTGT+AGG | - | 50571:5696-5715 | MS.gene050725:CDS | 20.0% |
| !!! | TTTAGAATTCAACTCAAAAA+TGG | - | 50571:6575-6594 | MS.gene050725:CDS | 20.0% |
| !!! | TTTCTAAAGTTTGGATAAAA+GGG | - | 50571:6465-6484 | MS.gene050725:intron | 20.0% |
| ! | AAGGGTCAAAAAAGAATAAA+TGG | - | 50571:6483-6502 | MS.gene050725:intron | 25.0% |
| ! | AGGGTCAAAAAAGAATAAAT+GGG | - | 50571:6484-6503 | MS.gene050725:intron | 25.0% |
| ! | GTATTTATATATGCAGAGTT+GGG | - | 50571:6351-6370 | MS.gene050725:CDS | 25.0% |
| ! | TGTATTTATATATGCAGAGT+TGG | - | 50571:6350-6369 | MS.gene050725:CDS | 25.0% |
| !!! | TATTTTGATTAACTTGTAGG+TGG | - | 50571:5699-5718 | MS.gene050725:CDS | 25.0% |
| AAAATAGTCTCTCCCATTTA+TGG | + | 50571:6405-6424 | None:intergenic | 30.0% | |
| AATTCAACTCAAAAATGGGA+AGG | - | 50571:6580-6599 | MS.gene050725:CDS | 30.0% | |
| ACTAAAAATACTTGTTCGCT+AGG | + | 50571:6270-6289 | None:intergenic | 30.0% | |
| AGTTTGACAATGAAACATCA+AGG | + | 50571:6221-6240 | None:intergenic | 30.0% | |
| ATTAATTAAAGTAACACCGG+TGG | - | 50571:6164-6183 | MS.gene050725:CDS | 30.0% | |
| GTTTGACAATGAAACATCAA+GGG | + | 50571:6220-6239 | None:intergenic | 30.0% | |
| !!! | TAGCGAACAAGTATTTTTAG+TGG | - | 50571:6269-6288 | MS.gene050725:CDS | 30.0% |
| AATCTGTACACAGATGGATA+TGG | - | 50571:5738-5757 | MS.gene050725:intron | 35.0% | |
| ACATACCTCCTGTACAAAAT+GGG | + | 50571:6026-6045 | None:intergenic | 35.0% | |
| ACATATCAAAGTGAGGTCTA+GGG | + | 50571:5956-5975 | None:intergenic | 35.0% | |
| AGTACTGCTCTCTTTAATGA+TGG | - | 50571:5780-5799 | MS.gene050725:intron | 35.0% | |
| ATTTGTGGCAGTAATAGTGA+TGG | + | 50571:5880-5899 | None:intergenic | 35.0% | |
| CAAAGCCTAAGCTATCTTAA+TGG | - | 50571:6539-6558 | MS.gene050725:CDS | 35.0% | |
| GTACTGCTCTCTTTAATGAT+GGG | - | 50571:5781-5800 | MS.gene050725:intron | 35.0% | |
| GTACTTAGCTATAGTCTGAA+AGG | + | 50571:5988-6007 | None:intergenic | 35.0% | |
| TATGGAAATCTGTACACAGA+TGG | - | 50571:5732-5751 | MS.gene050725:intron | 35.0% | |
| TCAGAGTAGAATCTGTTGTT+TGG | - | 50571:5533-5552 | MS.gene050725:CDS | 35.0% | |
| TCTGACCATTAAGATAGCTT+AGG | + | 50571:6547-6566 | None:intergenic | 35.0% | |
| ! | ATCAGATAGTTTGTGATGCA+AGG | - | 50571:5823-5842 | MS.gene050725:intron | 35.0% |
| ! | GAATTGTTCCCATTTTGTAC+AGG | - | 50571:6015-6034 | MS.gene050725:intron | 35.0% |
| ! | GTTTGGTGGACAAAAATTTG+TGG | + | 50571:5895-5914 | None:intergenic | 35.0% |
| ! | TTGGTGCTTATAAGCAATGT+AGG | - | 50571:6428-6447 | MS.gene050725:intron | 35.0% |
| ! | TTTAATGATGGGAAGTCATG+TGG | - | 50571:5792-5811 | MS.gene050725:intron | 35.0% |
| !! | GTGGAGAGATTTCTAAAGTT+TGG | - | 50571:6456-6475 | MS.gene050725:intron | 35.0% |
| ACCAACCACCATTGTCATTA+GGG | + | 50571:5926-5945 | None:intergenic | 40.0% | |
| ACTATAGCTAAGTACAGAGC+TGG | - | 50571:5993-6012 | MS.gene050725:intron | 40.0% | |
| ATATCAAAGTGAGGTCTAGG+GGG | + | 50571:5954-5973 | None:intergenic | 40.0% | |
| CAAGCTCATGCAACTTTCTA+TGG | - | 50571:5559-5578 | MS.gene050725:CDS | 40.0% | |
| CAATTTACCCATTGTTCCTG+AGG | + | 50571:5596-5615 | None:intergenic | 40.0% | |
| CATATCAAAGTGAGGTCTAG+GGG | + | 50571:5955-5974 | None:intergenic | 40.0% | |
| CTTATAAGCAATGTAGGTGG+AGG | - | 50571:6434-6453 | MS.gene050725:intron | 40.0% | |
| GAACCGATGTCAATGAATTG+GGG | - | 50571:6506-6525 | MS.gene050725:CDS | 40.0% | |
| GACAATGAAACATCAAGGGA+CGG | + | 50571:6216-6235 | None:intergenic | 40.0% | |
| GACATACCTCCTGTACAAAA+TGG | + | 50571:6027-6046 | None:intergenic | 40.0% | |
| GACATATCAAAGTGAGGTCT+AGG | + | 50571:5957-5976 | None:intergenic | 40.0% | |
| GATTTGATTGATATGCAGCG+TGG | + | 50571:6300-6319 | None:intergenic | 40.0% | |
| GGAACCGATGTCAATGAATT+GGG | - | 50571:6505-6524 | MS.gene050725:CDS | 40.0% | |
| GGTTGAGACATATCAAAGTG+AGG | + | 50571:5963-5982 | None:intergenic | 40.0% | |
| GTGCTTATAAGCAATGTAGG+TGG | - | 50571:6431-6450 | MS.gene050725:intron | 40.0% | |
| GTGTCAAACTATCAGTTCAG+TGG | + | 50571:6248-6267 | None:intergenic | 40.0% | |
| TTAGCTATAGTCTGAAAGGC+AGG | + | 50571:5984-6003 | None:intergenic | 40.0% | |
| TTTGCACTCCCTAATGACAA+TGG | - | 50571:5915-5934 | MS.gene050725:intron | 40.0% | |
| ! | CAATGAATTGGGGTGCTAAT+TGG | - | 50571:6516-6535 | MS.gene050725:CDS | 40.0% |
| ! | TCATTAGGGAGTGCAAAGTT+TGG | + | 50571:5912-5931 | None:intergenic | 40.0% |
| ! | TTGTTCCCATTTTGTACAGG+AGG | - | 50571:6018-6037 | MS.gene050725:intron | 40.0% |
| !! | TGGGAGAGACTATTTTGAGT+TGG | - | 50571:6409-6428 | MS.gene050725:intron | 40.0% |
| AACTTGTAGGTGGTGCATGT+GGG | - | 50571:5709-5728 | MS.gene050725:intron | 45.0% | |
| AAGTGATGCCTCAGGAACAA+TGG | - | 50571:5585-5604 | MS.gene050725:CDS | 45.0% | |
| AGAGTTGGGTGCAAAAGAAG+TGG | - | 50571:6365-6384 | MS.gene050725:intron | 45.0% | |
| AGTGATGCCTCAGGAACAAT+GGG | - | 50571:5586-5605 | MS.gene050725:CDS | 45.0% | |
| ATAAGCAATGTAGGTGGAGG+TGG | - | 50571:6437-6456 | MS.gene050725:intron | 45.0% | |
| ATGCAAGGCAAGTTCCTCAA+TGG | - | 50571:5838-5857 | MS.gene050725:intron | 45.0% | |
| CACCAACCACCATTGTCATT+AGG | + | 50571:5927-5946 | None:intergenic | 45.0% | |
| CCACGTTGTAAAATGACCAC+CGG | + | 50571:6183-6202 | None:intergenic | 45.0% | |
| GCACCCCAATTCATTGACAT+CGG | + | 50571:6512-6531 | None:intergenic | 45.0% | |
| GCTCATGCAACTTTCTATGG+TGG | - | 50571:5562-5581 | MS.gene050725:CDS | 45.0% | |
| GGGAACCGATGTCAATGAAT+TGG | - | 50571:6504-6523 | MS.gene050725:CDS | 45.0% | |
| TCCCTAATGACAATGGTGGT+TGG | - | 50571:5922-5941 | MS.gene050725:intron | 45.0% | |
| ! | AATGATGGGAAGTCATGTGG+TGG | - | 50571:5795-5814 | MS.gene050725:intron | 45.0% |
| ! | TAACTTGTAGGTGGTGCATG+TGG | - | 50571:5708-5727 | MS.gene050725:CDS | 45.0% |
| ! | TTAGGGAGTGCAAAGTTTGG+TGG | + | 50571:5909-5928 | None:intergenic | 45.0% |
| !! | CGGTGGTCATTTTACAACGT+GGG | - | 50571:6181-6200 | MS.gene050725:CDS | 45.0% |
| GCACTCCCTAATGACAATGG+TGG | - | 50571:5918-5937 | MS.gene050725:intron | 50.0% | |
| GTTCCTCAATGGTGTCTCAG+AGG | - | 50571:5849-5868 | MS.gene050725:intron | 50.0% | |
| ! | TATGGTGGAAGTGATGCCTC+AGG | - | 50571:5577-5596 | MS.gene050725:CDS | 50.0% |
| !! | CCGGTGGTCATTTTACAACG+TGG | - | 50571:6180-6199 | MS.gene050725:CDS | 50.0% |
| GTAGGTGGTGCATGTGGGTA+TGG | - | 50571:5714-5733 | MS.gene050725:intron | 55.0% | |
| !! | GTGCCTCTGAGACACCATTG+AGG | + | 50571:5855-5874 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50571 | gene | 5475 | 6619 | 5475 | ID=MS.gene050725 |
| 50571 | mRNA | 5475 | 6619 | 5475 | ID=MS.gene050725.t1;Parent=MS.gene050725 |
| 50571 | exon | 6487 | 6619 | 6487 | ID=MS.gene050725.t1.exon1;Parent=MS.gene050725.t1 |
| 50571 | CDS | 6487 | 6619 | 6487 | ID=cds.MS.gene050725.t1;Parent=MS.gene050725.t1 |
| 50571 | exon | 6055 | 6376 | 6055 | ID=MS.gene050725.t1.exon2;Parent=MS.gene050725.t1 |
| 50571 | CDS | 6055 | 6376 | 6055 | ID=cds.MS.gene050725.t1;Parent=MS.gene050725.t1 |
| 50571 | exon | 5475 | 5727 | 5475 | ID=MS.gene050725.t1.exon3;Parent=MS.gene050725.t1 |
| 50571 | CDS | 5475 | 5727 | 5475 | ID=cds.MS.gene050725.t1;Parent=MS.gene050725.t1 |
| Gene Sequence |
| Protein sequence |
