Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73748.t1 | AES89596.2 | 71 | 62 | 18 | 0 | 100 | 161 | 145 | 206 | 3.90E-14 | 88.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73748.t1 | Q9XFH4 | 87.8 | 41 | 5 | 0 | 100 | 140 | 542 | 582 | 5.7e-14 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73748.t1 | G7JRR3 | 71.0 | 62 | 18 | 0 | 100 | 161 | 145 | 206 | 2.8e-14 | 88.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057451 | MS.gene73748 | -0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene057452 | MS.gene73748 | -0.828149 | 1.06E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene73748 | 0.803964 | 2.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73748.t1 | MTR_7g069610 | 86.000 | 50 | 7 | 0 | 30 | 79 | 153 | 202 | 7.03e-22 | 88.2 |
| MS.gene73748.t1 | MTR_4g077600 | 69.841 | 63 | 19 | 0 | 99 | 161 | 144 | 206 | 5.56e-21 | 86.3 |
| MS.gene73748.t1 | MTR_4g077600 | 67.213 | 61 | 16 | 1 | 98 | 158 | 102 | 158 | 2.25e-20 | 82.8 |
| MS.gene73748.t1 | MTR_5g020000 | 92.857 | 42 | 3 | 0 | 99 | 140 | 523 | 564 | 6.93e-20 | 85.9 |
| MS.gene73748.t1 | MTR_4g017810 | 62.000 | 50 | 19 | 0 | 30 | 79 | 137 | 186 | 2.64e-14 | 68.6 |
| MS.gene73748.t1 | MTR_2g032910 | 87.500 | 32 | 4 | 0 | 30 | 61 | 22 | 53 | 1.35e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73748.t1 | AT5G66750 | 85.714 | 42 | 6 | 0 | 99 | 140 | 541 | 582 | 1.64e-18 | 82.0 |
| MS.gene73748.t1 | AT3G51780 | 66.000 | 50 | 17 | 0 | 30 | 79 | 156 | 205 | 3.38e-15 | 71.2 |
Find 45 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTCGATTGCTCTATTT+CGG | 0.216670 | 7.3:-25295492 | MS.gene73748:CDS |
| GCTAAAGGTGGATGGTATTA+AGG | 0.298088 | 7.3:-25295984 | MS.gene73748:CDS |
| GCATTCGATTGCTCTATTTC+GGG | 0.299478 | 7.3:-25295491 | MS.gene73748:CDS |
| GGAGATAAGAAGGCTGTTAA+TGG | 0.336607 | 7.3:-25293110 | MS.gene73748:CDS |
| GGTGCAGGAAGTTGATTTCA+TGG | 0.366297 | 7.3:-25293089 | MS.gene73748:CDS |
| GACCAAAGTGCTAGATATAA+TGG | 0.367410 | 7.3:-25294963 | MS.gene73748:CDS |
| GTCTTGGATGTGGCTGTCAA+TGG | 0.409273 | 7.3:-25296067 | MS.gene73748:CDS |
| CGGGTTGACTTCGCAGGAAG+AGG | 0.421872 | 7.3:-25295472 | MS.gene73748:CDS |
| AAAAGGGTTTCGAAGTTTCC+AGG | 0.425046 | 7.3:-25294925 | MS.gene73748:CDS |
| AGTTTCCAGGATTGACGGTT+CGG | 0.445988 | 7.3:-25294912 | MS.gene73748:CDS |
| GTTCGGTGAAGCTGGATGAT+AGG | 0.450647 | 7.3:-25294895 | MS.gene73748:CDS |
| GATTGACGGTTCGGTGAAGC+TGG | 0.453321 | 7.3:-25294903 | MS.gene73748:CDS |
| CTATTTCGGGTTGACTTCGC+AGG | 0.456442 | 7.3:-25295478 | MS.gene73748:CDS |
| AAGTTGATTTCATGGCTTAG+AGG | 0.456666 | 7.3:-25293081 | None:intergenic |
| AAATTCTTTGTCAGAAACCT+TGG | 0.460069 | 7.3:+25296039 | None:intergenic |
| CTTCACCGAACCGTCAATCC+TGG | 0.462843 | 7.3:+25294907 | None:intergenic |
| TTAAATTTCTATAGGATCCA+TGG | 0.463306 | 7.3:-25293150 | MS.gene73748:intron |
| CTTCTTATCTCCATTGTTGA+GGG | 0.466551 | 7.3:+25293121 | None:intergenic |
| GCAGGTGTTGGTCTTGGATG+TGG | 0.467678 | 7.3:-25296077 | MS.gene73748:intron |
| AGGAGAGCTTACTGAGCGCC+AGG | 0.470874 | 7.3:-25295452 | MS.gene73748:intron |
| ATCCATTATATCTAGCACTT+TGG | 0.479735 | 7.3:+25294961 | None:intergenic |
| TTCGAAGTTTCCAGGATTGA+CGG | 0.486372 | 7.3:-25294917 | MS.gene73748:CDS |
| ATACATGGAATTTGAAGAGC+TGG | 0.496783 | 7.3:-25296396 | MS.gene73748:CDS |
| TTGGATGTGGCTGTCAATGG+AGG | 0.505626 | 7.3:-25296064 | MS.gene73748:CDS |
| AAGAAGGCTGTTAATGGTGC+AGG | 0.505668 | 7.3:-25293104 | MS.gene73748:CDS |
| CCTCAACAATGGAGATAAGA+AGG | 0.520323 | 7.3:-25293120 | MS.gene73748:CDS |
| ATTGCAGCCGATGGTTCTAA+AGG | 0.523936 | 7.3:-25296424 | MS.gene73748:intron |
| ACTTATGAGGAAATTGCTAA+AGG | 0.525435 | 7.3:-25295999 | MS.gene73748:CDS |
| CCTTCTTATCTCCATTGTTG+AGG | 0.525925 | 7.3:+25293120 | None:intergenic |
| ATCAACTCCTTTAGAACCAT+CGG | 0.550206 | 7.3:+25296417 | None:intergenic |
| TGACTACAGAGTTACTTATG+AGG | 0.552070 | 7.3:-25296012 | MS.gene73748:CDS |
| AGGTTCTGATCTTCAGTCAG+TGG | 0.558860 | 7.3:-25294985 | MS.gene73748:CDS |
| GTTCTAAAGGAGTTGATACA+TGG | 0.564029 | 7.3:-25296411 | MS.gene73748:CDS |
| AGGAAATTGCTAAAGGTGGA+TGG | 0.567691 | 7.3:-25295992 | MS.gene73748:CDS |
| TGAAGCTGGATGATAGGAAA+CGG | 0.574761 | 7.3:-25294889 | MS.gene73748:CDS |
| ATTGTTGAGGGAAGATGCCA+TGG | 0.577218 | 7.3:+25293133 | None:intergenic |
| GCTGGATGATAGGAAACGGC+AGG | 0.584808 | 7.3:-25294885 | MS.gene73748:intron |
| TATGAGGAAATTGCTAAAGG+TGG | 0.588329 | 7.3:-25295996 | MS.gene73748:CDS |
| GAATTTGAAGAGCTGGCAGA+AGG | 0.589098 | 7.3:-25296389 | MS.gene73748:CDS |
| TTAAGGCTGAAGGTGATGCT+AGG | 0.608671 | 7.3:-25295967 | MS.gene73748:CDS |
| TGGATGTGGCTGTCAATGGA+GGG | 0.610730 | 7.3:-25296063 | MS.gene73748:CDS |
| GTGGATGGTATTAAGGCTGA+AGG | 0.610870 | 7.3:-25295977 | MS.gene73748:CDS |
| GGCTGTCAATGGAGGGACCA+AGG | 0.612660 | 7.3:-25296056 | MS.gene73748:CDS |
| ATGGCATCTTCCCTCAACAA+TGG | 0.621251 | 7.3:-25293131 | MS.gene73748:CDS |
| TAGGTTGCAGAGAAAAGCTG+AGG | 0.702198 | 7.3:-25295948 | MS.gene73748:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACATATATAATATAGA+AGG | + | chr7.3:25293971-25293990 | None:intergenic | 10.0% |
| !! | TTATGTAAAATAAAATGATT+AGG | - | chr7.3:25296065-25296084 | MS.gene73748:CDS | 10.0% |
| !!! | TTTTACATAAAAACATAATA+TGG | + | chr7.3:25296055-25296074 | None:intergenic | 10.0% |
| !! | AATATTGAGAATAATAGTAT+GGG | + | chr7.3:25296323-25296342 | None:intergenic | 15.0% |
| !! | ATTGATCAATATATTATAGT+AGG | + | chr7.3:25295179-25295198 | None:intergenic | 15.0% |
| !! | TAATATTGAGAATAATAGTA+TGG | + | chr7.3:25296324-25296343 | None:intergenic | 15.0% |
| !!! | AAAACAATTTTTTTTGAGAT+AGG | - | chr7.3:25293825-25293844 | MS.gene73748:intron | 15.0% |
| !!! | AATAGAAGTATAGAAAAAAT+GGG | + | chr7.3:25296234-25296253 | None:intergenic | 15.0% |
| !!! | AGGTTTTTATATTATGAAAT+AGG | - | chr7.3:25296085-25296104 | MS.gene73748:intron | 15.0% |
| !!! | ATTAGTGACAATTTATTTTT+AGG | - | chr7.3:25293395-25293414 | MS.gene73748:intron | 15.0% |
| !!! | CTTTAATTGTATTGATTTAT+TGG | - | chr7.3:25294440-25294459 | MS.gene73748:intron | 15.0% |
| !!! | GATTATTATTTTAGTGAAAA+GGG | - | chr7.3:25294653-25294672 | MS.gene73748:intron | 15.0% |
| !!! | GGTTTTTATATTATGAAATA+GGG | - | chr7.3:25296086-25296105 | MS.gene73748:intron | 15.0% |
| !!! | TCATTTTTTTTAACAAAACA+TGG | + | chr7.3:25295301-25295320 | None:intergenic | 15.0% |
| !!! | TTTGAAATTCAATAAATTAG+TGG | + | chr7.3:25294934-25294953 | None:intergenic | 15.0% |
| !! | AATTATAAGCATAATTCAGA+TGG | - | chr7.3:25294853-25294872 | MS.gene73748:intron | 20.0% |
| !! | ACACTTTGTTAAATTTCTAT+AGG | - | chr7.3:25296436-25296455 | MS.gene73748:intron | 20.0% |
| !! | ATATTGAGAATAATAGTATG+GGG | + | chr7.3:25296322-25296341 | None:intergenic | 20.0% |
| !! | ATTAGACCAGAAATAATTAA+CGG | + | chr7.3:25295124-25295143 | None:intergenic | 20.0% |
| !! | CTCTATCTATTGAAATATAA+AGG | - | chr7.3:25296162-25296181 | MS.gene73748:intron | 20.0% |
| !! | TATATGTTAGAATAGAAGTT+TGG | - | chr7.3:25293900-25293919 | MS.gene73748:intron | 20.0% |
| !! | TTTGAAGAAAAAAGAAAGAA+CGG | + | chr7.3:25296276-25296295 | None:intergenic | 20.0% |
| !!! | AAAAGTGCGTTATATAATTT+TGG | - | chr7.3:25295578-25295597 | MS.gene73748:intron | 20.0% |
| !!! | AACTTTTGCGATTAAAATAA+TGG | + | chr7.3:25294193-25294212 | None:intergenic | 20.0% |
| !!! | ACTTTTGCGATTAAAATAAT+GGG | + | chr7.3:25294192-25294211 | None:intergenic | 20.0% |
| !!! | ATTACTGATTTTAATTTTGC+AGG | - | chr7.3:25293499-25293518 | MS.gene73748:intron | 20.0% |
| !!! | CAATTTTTATAGTTTGAGTT+CGG | - | chr7.3:25295831-25295850 | MS.gene73748:intron | 20.0% |
| !!! | GAATAGAAGTATAGAAAAAA+TGG | + | chr7.3:25296235-25296254 | None:intergenic | 20.0% |
| !!! | GGATTATTATTTTAGTGAAA+AGG | - | chr7.3:25294652-25294671 | MS.gene73748:intron | 20.0% |
| !!! | GTTAATAGATAAAAAGTATG+TGG | - | chr7.3:25295343-25295362 | MS.gene73748:intron | 20.0% |
| !!! | TATGATTTGGTTTTATAGTT+GGG | - | chr7.3:25295926-25295945 | MS.gene73748:intron | 20.0% |
| !!! | TTAATTATTTCTGGTCTAAT+TGG | - | chr7.3:25295124-25295143 | MS.gene73748:intron | 20.0% |
| !!! | TTTAATACCATGATTTTGTT+TGG | + | chr7.3:25293768-25293787 | None:intergenic | 20.0% |
| !!! | TTTTTATTATTTCCTTCTCT+AGG | - | chr7.3:25294217-25294236 | MS.gene73748:intron | 20.0% |
| ! | AACACAGTAAGTAAAATCTA+AGG | + | chr7.3:25294290-25294309 | None:intergenic | 25.0% |
| ! | AGAATAGAAGCTACAAATAA+TGG | - | chr7.3:25293866-25293885 | MS.gene73748:intron | 25.0% |
| ! | GAGAAGGAAATAATAAAAAG+AGG | + | chr7.3:25294216-25294235 | None:intergenic | 25.0% |
| ! | TATATTTATGTTAGTAGCTG+TGG | + | chr7.3:25296192-25296211 | None:intergenic | 25.0% |
| ! | TGTAATAACTCGAGAAAAAA+AGG | + | chr7.3:25295620-25295639 | None:intergenic | 25.0% |
| ! | TTAAATTTCTATAGGATCCA+TGG | - | chr7.3:25296444-25296463 | MS.gene73748:intron | 25.0% |
| ! | TTAGACCAGAAATAATTAAC+GGG | + | chr7.3:25295123-25295142 | None:intergenic | 25.0% |
| !! | AAATTAGTGGTGTCAATAAT+GGG | + | chr7.3:25294921-25294940 | None:intergenic | 25.0% |
| !! | AATCTCTATGATGTCATTTA+AGG | - | chr7.3:25294375-25294394 | MS.gene73748:intron | 25.0% |
| !! | ATAGGGTAAGATGATTTTAT+TGG | - | chr7.3:25296103-25296122 | MS.gene73748:intron | 25.0% |
| !! | CTTTTCCAGAAAATTACTTT+AGG | - | chr7.3:25293255-25293274 | MS.gene73748:intron | 25.0% |
| !! | GTGATTTTACTTTCATGATT+TGG | - | chr7.3:25293294-25293313 | MS.gene73748:intron | 25.0% |
| !! | TAAATTAGTGGTGTCAATAA+TGG | + | chr7.3:25294922-25294941 | None:intergenic | 25.0% |
| !! | TATATAACGCACTTTTAATG+TGG | + | chr7.3:25295574-25295593 | None:intergenic | 25.0% |
| !! | TGAATCTTTTACATACATCT+TGG | - | chr7.3:25296371-25296390 | MS.gene73748:intron | 25.0% |
| !! | TTATGCATTTTCTTCTTATG+AGG | - | chr7.3:25294819-25294838 | MS.gene73748:intron | 25.0% |
| !!! | AAGAAAGAACGGTTTATTTT+TGG | + | chr7.3:25296265-25296284 | None:intergenic | 25.0% |
| !!! | CTTTTTAGTGTAGTATGATT+TGG | - | chr7.3:25295913-25295932 | MS.gene73748:intron | 25.0% |
| !!! | GTATGATTTGGTTTTATAGT+TGG | - | chr7.3:25295925-25295944 | MS.gene73748:intron | 25.0% |
| !!! | TCTCATGTTTGCTATTTTAT+CGG | + | chr7.3:25294034-25294053 | None:intergenic | 25.0% |
| AAAAGCTGAGGTAATGTTTA+TGG | - | chr7.3:25293658-25293677 | MS.gene73748:intron | 30.0% | |
| AAATTCTTTGTCAGAAACCT+TGG | + | chr7.3:25293558-25293577 | None:intergenic | 30.0% | |
| AACCTAATAGCATTTAGCAA+AGG | + | chr7.3:25294594-25294613 | None:intergenic | 30.0% | |
| AACTATCTTAGCAGTTAGTT+AGG | + | chr7.3:25295979-25295998 | None:intergenic | 30.0% | |
| AAGTAGAATCATGGACAATT+TGG | - | chr7.3:25295517-25295536 | MS.gene73748:intron | 30.0% | |
| ACATAAAACAAACCTAGAGA+AGG | + | chr7.3:25294232-25294251 | None:intergenic | 30.0% | |
| ACTTATGAGGAAATTGCTAA+AGG | - | chr7.3:25293595-25293614 | MS.gene73748:intron | 30.0% | |
| ACTTTCTTTCCTATTGCAAA+TGG | - | chr7.3:25294885-25294904 | MS.gene73748:intron | 30.0% | |
| AGAAAATGCATAACACCAAA+AGG | + | chr7.3:25294812-25294831 | None:intergenic | 30.0% | |
| AGTGAATCAAAAGTAAGTTG+AGG | + | chr7.3:25294775-25294794 | None:intergenic | 30.0% | |
| ATATGTGCCAAACAAAATCA+TGG | - | chr7.3:25293758-25293777 | MS.gene73748:intron | 30.0% | |
| ATCCATTATATCTAGCACTT+TGG | + | chr7.3:25294636-25294655 | None:intergenic | 30.0% | |
| ATCTAATAGGAACATGCAAA+TGG | + | chr7.3:25295246-25295265 | None:intergenic | 30.0% | |
| CATGAACAAATGCAAAAAAG+AGG | + | chr7.3:25295053-25295072 | None:intergenic | 30.0% | |
| CTTAATGCAAAGTAGAATCA+TGG | - | chr7.3:25295508-25295527 | MS.gene73748:intron | 30.0% | |
| GAGTGAAAGCTAATTATTCA+AGG | + | chr7.3:25296145-25296164 | None:intergenic | 30.0% | |
| GTTAGGACTGTTCAAATAAA+CGG | + | chr7.3:25295962-25295981 | None:intergenic | 30.0% | |
| TACAGTTTGTAATTGATGCA+AGG | - | chr7.3:25295750-25295769 | MS.gene73748:intron | 30.0% | |
| TAGACCAGAAATAATTAACG+GGG | + | chr7.3:25295122-25295141 | None:intergenic | 30.0% | |
| TCTTTGTCTTTACATGCATA+TGG | - | chr7.3:25295203-25295222 | MS.gene73748:intron | 30.0% | |
| TGATGTGGTTACAAAAGAAA+TGG | - | chr7.3:25295083-25295102 | MS.gene73748:intron | 30.0% | |
| ! | AGAAGCCTAAAGTAATTTTC+TGG | + | chr7.3:25293263-25293282 | None:intergenic | 30.0% |
| ! | TATGATGTTTTGCTTGATGA+TGG | - | chr7.3:25294261-25294280 | MS.gene73748:intron | 30.0% |
| ! | TGTGCTTTTAGTCAATTACA+TGG | + | chr7.3:25295695-25295714 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTATGAGGTATG+TGG | - | chr7.3:25294826-25294845 | MS.gene73748:intron | 30.0% |
| !! | GATTTTGTTTGGCACATATA+TGG | + | chr7.3:25293757-25293776 | None:intergenic | 30.0% |
| !! | TAAGAAAATGCTTTGGTTCT+GGG | + | chr7.3:25296011-25296030 | None:intergenic | 30.0% |
| !! | TTGGTGTTCAAGTTGAAATA+GGG | - | chr7.3:25295536-25295555 | MS.gene73748:intron | 30.0% |
| !! | TTTACATTGACTCTATTCCT+TGG | + | chr7.3:25295272-25295291 | None:intergenic | 30.0% |
| !! | TTTGGTGTTCAAGTTGAAAT+AGG | - | chr7.3:25295535-25295554 | MS.gene73748:intron | 30.0% |
| !! | TTTTACATACATCTTGGTGT+GGG | - | chr7.3:25296377-25296396 | MS.gene73748:CDS | 30.0% |
| !!! | CGTTGATTTGATTGAAGTTT+TGG | - | chr7.3:25295485-25295504 | MS.gene73748:CDS | 30.0% |
| !!! | GATTTTAATTTTGCAGGTGT+TGG | - | chr7.3:25293505-25293524 | MS.gene73748:intron | 30.0% |
| !!! | GGAGTATTGATCGTTTTTTA+GGG | - | chr7.3:25293315-25293334 | MS.gene73748:intron | 30.0% |
| !!! | TCTAGGTTTGTTTTATGTGA+AGG | - | chr7.3:25294234-25294253 | MS.gene73748:intron | 30.0% |
| !!! | TGGAGTATTGATCGTTTTTT+AGG | - | chr7.3:25293314-25293333 | MS.gene73748:intron | 30.0% |
| AATAATAGTATGGGGCAAGA+AGG | + | chr7.3:25296314-25296333 | None:intergenic | 35.0% | |
| ACGAACTGATGTTTCAAACA+TGG | + | chr7.3:25295870-25295889 | None:intergenic | 35.0% | |
| AGAGGACTAAGAAAATGCTT+TGG | + | chr7.3:25296018-25296037 | None:intergenic | 35.0% | |
| ATACATGGAATTTGAAGAGC+TGG | - | chr7.3:25293198-25293217 | MS.gene73748:intron | 35.0% | |
| CAATTACATGGTAAGCTTAC+AGG | + | chr7.3:25295683-25295702 | None:intergenic | 35.0% | |
| CATAACACCAAAAGGACAAA+AGG | + | chr7.3:25294804-25294823 | None:intergenic | 35.0% | |
| CATGAGACAATCATGTGATT+TGG | - | chr7.3:25294047-25294066 | MS.gene73748:intron | 35.0% | |
| CTTAGACATAGTAAGCTTAC+AGG | + | chr7.3:25295657-25295676 | None:intergenic | 35.0% | |
| CTTCTTATCTCCATTGTTGA+GGG | + | chr7.3:25296476-25296495 | None:intergenic | 35.0% | |
| GTCATATCAGAGAAACAGTT+TGG | - | chr7.3:25295888-25295907 | MS.gene73748:intron | 35.0% | |
| TAATAGCATTTAGCAAAGGC+AGG | + | chr7.3:25294590-25294609 | None:intergenic | 35.0% | |
| TAATGACTAATTCACAGACC+TGG | + | chr7.3:25294163-25294182 | None:intergenic | 35.0% | |
| TATGAGGAAATTGCTAAAGG+TGG | - | chr7.3:25293598-25293617 | MS.gene73748:intron | 35.0% | |
| TATTCCTTGGCTCATCTAAT+AGG | + | chr7.3:25295259-25295278 | None:intergenic | 35.0% | |
| TGACTACAGAGTTACTTATG+AGG | - | chr7.3:25293582-25293601 | MS.gene73748:intron | 35.0% | |
| TGCATTCGATTGCTCTATTT+CGG | - | chr7.3:25294102-25294121 | MS.gene73748:intron | 35.0% | |
| TGCCTTTGCTAAATGCTATT+AGG | - | chr7.3:25294589-25294608 | MS.gene73748:intron | 35.0% | |
| TGGTTACAAAAGAAATGGCT+TGG | - | chr7.3:25295088-25295107 | MS.gene73748:intron | 35.0% | |
| TTTAGATCAATTGTCTCCCT+TGG | + | chr7.3:25294357-25294376 | None:intergenic | 35.0% | |
| ! | AAGCATTTTCTTAGTCCTCT+AGG | - | chr7.3:25296018-25296037 | MS.gene73748:CDS | 35.0% |
| ! | ATAACGCACTTTTAATGTGG+AGG | + | chr7.3:25295571-25295590 | None:intergenic | 35.0% |
| ! | ATGAATCTGCCATTTGCAAT+AGG | + | chr7.3:25294897-25294916 | None:intergenic | 35.0% |
| ! | ATTCACAAGCGTGATCTTTT+TGG | - | chr7.3:25293123-25293142 | MS.gene73748:CDS | 35.0% |
| ! | CTAAGAAAATGCTTTGGTTC+TGG | + | chr7.3:25296012-25296031 | None:intergenic | 35.0% |
| ! | CTTTTACATACATCTTGGTG+TGG | - | chr7.3:25296376-25296395 | MS.gene73748:CDS | 35.0% |
| ! | GACCAAAGTGCTAGATATAA+TGG | - | chr7.3:25294631-25294650 | MS.gene73748:intron | 35.0% |
| ! | TTATGATGTCTTTTCTGCTC+AGG | - | chr7.3:25296341-25296360 | MS.gene73748:intron | 35.0% |
| ! | TTGACTAAAAGCACATCACA+AGG | - | chr7.3:25295700-25295719 | MS.gene73748:intron | 35.0% |
| ! | TTTGACACCTTTTGTCCTTT+TGG | - | chr7.3:25294794-25294813 | MS.gene73748:intron | 35.0% |
| ! | TTTTGTAACCACATCACAGA+AGG | + | chr7.3:25295079-25295098 | None:intergenic | 35.0% |
| !! | ATCAACTCCTTTAGAACCAT+CGG | + | chr7.3:25293180-25293199 | None:intergenic | 35.0% |
| !! | GTTCTAAAGGAGTTGATACA+TGG | - | chr7.3:25293183-25293202 | MS.gene73748:intron | 35.0% |
| !! | TGGTGTTCAAGTTGAAATAG+GGG | - | chr7.3:25295537-25295556 | MS.gene73748:intron | 35.0% |
| AAAAGGGTTTCGAAGTTTCC+AGG | - | chr7.3:25294669-25294688 | MS.gene73748:intron | 40.0% | |
| AAAGCACATGCTCTTCTATC+TGG | - | chr7.3:25295407-25295426 | MS.gene73748:intron | 40.0% | |
| AGGAAATTGCTAAAGGTGGA+TGG | - | chr7.3:25293602-25293621 | MS.gene73748:intron | 40.0% | |
| ATGGAGTACAACATTCCTAG+AGG | + | chr7.3:25296036-25296055 | None:intergenic | 40.0% | |
| CCTCAACAATGGAGATAAGA+AGG | - | chr7.3:25296474-25296493 | MS.gene73748:intron | 40.0% | |
| CCTTCTTATCTCCATTGTTG+AGG | + | chr7.3:25296477-25296496 | None:intergenic | 40.0% | |
| GCATGAACACTGACATATCA+GGG | + | chr7.3:25295028-25295047 | None:intergenic | 40.0% | |
| GCATTCGATTGCTCTATTTC+GGG | - | chr7.3:25294103-25294122 | MS.gene73748:intron | 40.0% | |
| GCTAAAGGTGGATGGTATTA+AGG | - | chr7.3:25293610-25293629 | MS.gene73748:intron | 40.0% | |
| GGAGATAAGAAGGCTGTTAA+TGG | - | chr7.3:25296484-25296503 | MS.gene73748:intron | 40.0% | |
| TGAAGCTGGATGATAGGAAA+CGG | - | chr7.3:25294705-25294724 | MS.gene73748:intron | 40.0% | |
| TGCATGAACACTGACATATC+AGG | + | chr7.3:25295029-25295048 | None:intergenic | 40.0% | |
| TGTTCCTATTAGATGAGCCA+AGG | - | chr7.3:25295252-25295271 | MS.gene73748:intron | 40.0% | |
| TTCGAAGTTTCCAGGATTGA+CGG | - | chr7.3:25294677-25294696 | MS.gene73748:intron | 40.0% | |
| ! | GTGTTGTTGGTTGATGTTGT+AGG | + | chr7.3:25294325-25294344 | None:intergenic | 40.0% |
| !! | GTGTGGGTTATGCAATTTTG+TGG | - | chr7.3:25296393-25296412 | MS.gene73748:CDS | 40.0% |
| !!! | AATTTTGCAGGTGTTGGTCT+TGG | - | chr7.3:25293511-25293530 | MS.gene73748:intron | 40.0% |
| !!! | TGATCGTTTTTTAGGGCTCA+TGG | - | chr7.3:25293322-25293341 | MS.gene73748:intron | 40.0% |
| AACAACACGAGATTGAGCCA+AGG | - | chr7.3:25294337-25294356 | MS.gene73748:intron | 45.0% | |
| AAGAAGGCTGTTAATGGTGC+AGG | - | chr7.3:25296490-25296509 | MS.gene73748:intron | 45.0% | |
| ACAACACGAGATTGAGCCAA+GGG | - | chr7.3:25294338-25294357 | MS.gene73748:intron | 45.0% | |
| AGCGAGAACAACAGTTTGTG+TGG | - | chr7.3:25295806-25295825 | MS.gene73748:intron | 45.0% | |
| AGTTTCCAGGATTGACGGTT+CGG | - | chr7.3:25294682-25294701 | MS.gene73748:intron | 45.0% | |
| ATAGTATGGGGCAAGAAGGA+AGG | + | chr7.3:25296310-25296329 | None:intergenic | 45.0% | |
| ATGGCATCTTCCCTCAACAA+TGG | - | chr7.3:25296463-25296482 | MS.gene73748:intron | 45.0% | |
| ATTGTTGAGGGAAGATGCCA+TGG | + | chr7.3:25296464-25296483 | None:intergenic | 45.0% | |
| CCAGAAATAATTAACGGGGC+AGG | + | chr7.3:25295118-25295137 | None:intergenic | 45.0% | |
| CCTGCCCCGTTAATTATTTC+TGG | - | chr7.3:25295115-25295134 | MS.gene73748:intron | 45.0% | |
| GAATTTGAAGAGCTGGCAGA+AGG | - | chr7.3:25293205-25293224 | MS.gene73748:intron | 45.0% | |
| GCCACAAAAAGGAAGCAGAA+AGG | + | chr7.3:25294547-25294566 | None:intergenic | 45.0% | |
| GCTATTTGCACGGAATCACA+AGG | - | chr7.3:25294496-25294515 | MS.gene73748:intron | 45.0% | |
| GTGGATGGTATTAAGGCTGA+AGG | - | chr7.3:25293617-25293636 | MS.gene73748:intron | 45.0% | |
| TAGGTTGCAGAGAAAAGCTG+AGG | - | chr7.3:25293646-25293665 | MS.gene73748:intron | 45.0% | |
| TCATGCATCCTTCTGTGATG+TGG | - | chr7.3:25295068-25295087 | MS.gene73748:intron | 45.0% | |
| TTAAGGCTGAAGGTGATGCT+AGG | - | chr7.3:25293627-25293646 | MS.gene73748:intron | 45.0% | |
| TTGGCTCAATCTCGTGTTGT+TGG | + | chr7.3:25294338-25294357 | None:intergenic | 45.0% | |
| ! | AGGTTCTGATCTTCAGTCAG+TGG | - | chr7.3:25294609-25294628 | MS.gene73748:intron | 45.0% |
| ! | GCCTTTCTGCTTCCTTTTTG+TGG | - | chr7.3:25294543-25294562 | MS.gene73748:intron | 45.0% |
| ! | GGTGCAGGAAGTTGATTTCA+TGG | - | chr7.3:25296505-25296524 | MS.gene73748:intron | 45.0% |
| !! | ATTGCAGCCGATGGTTCTAA+AGG | - | chr7.3:25293170-25293189 | MS.gene73748:intron | 45.0% |
| !!! | ATTTTATTAAAAAAATTGAT+TGG | - | chr7.3:25295462-25295481 | MS.gene73748:CDS | 5.0% |
| CAAATAGCCGCTCCAGGAAT+CGG | + | chr7.3:25294484-25294503 | None:intergenic | 50.0% | |
| GGCAGGTCTGTATCAATGCT+TGG | - | chr7.3:25294726-25294745 | MS.gene73748:intron | 50.0% | |
| GTAGCAGCTTGGCCACAAAA+AGG | + | chr7.3:25294558-25294577 | None:intergenic | 50.0% | |
| GTCTTGGATGTGGCTGTCAA+TGG | - | chr7.3:25293527-25293546 | MS.gene73748:intron | 50.0% | |
| TGGATGTGGCTGTCAATGGA+GGG | - | chr7.3:25293531-25293550 | MS.gene73748:intron | 50.0% | |
| TTGGATGTGGCTGTCAATGG+AGG | - | chr7.3:25293530-25293549 | MS.gene73748:intron | 50.0% | |
| ! | GTTCGGTGAAGCTGGATGAT+AGG | - | chr7.3:25294699-25294718 | MS.gene73748:intron | 50.0% |
| ! | TCAATTGCTCGACCGATTCC+TGG | - | chr7.3:25294469-25294488 | MS.gene73748:intron | 50.0% |
| !! | CTATTTCGGGTTGACTTCGC+AGG | - | chr7.3:25294116-25294135 | MS.gene73748:intron | 50.0% |
| CTTCACCGAACCGTCAATCC+TGG | + | chr7.3:25294690-25294709 | None:intergenic | 55.0% | |
| CTTGTGCACATTGCAGCCGA+TGG | - | chr7.3:25293161-25293180 | MS.gene73748:intron | 55.0% | |
| GCTGGATGATAGGAAACGGC+AGG | - | chr7.3:25294709-25294728 | MS.gene73748:intron | 55.0% | |
| GGTGCAGATGAGTAGCAGCT+TGG | + | chr7.3:25294569-25294588 | None:intergenic | 55.0% | |
| GTATGGGGCAAGAAGGAAGG+TGG | + | chr7.3:25296307-25296326 | None:intergenic | 55.0% | |
| TCCTGGAGCGGCTATTTGCA+CGG | - | chr7.3:25294486-25294505 | MS.gene73748:intron | 55.0% | |
| !! | GATTGACGGTTCGGTGAAGC+TGG | - | chr7.3:25294691-25294710 | MS.gene73748:intron | 55.0% |
| !! | GCAGGTGTTGGTCTTGGATG+TGG | - | chr7.3:25293517-25293536 | MS.gene73748:intron | 55.0% |
| AGGAGAGCTTACTGAGCGCC+AGG | - | chr7.3:25294142-25294161 | MS.gene73748:intron | 60.0% | |
| GGCTGTCAATGGAGGGACCA+AGG | - | chr7.3:25293538-25293557 | MS.gene73748:intron | 60.0% | |
| TCCGTGCAAATAGCCGCTCC+AGG | + | chr7.3:25294490-25294509 | None:intergenic | 60.0% | |
| ! | CGGGTTGACTTCGCAGGAAG+AGG | - | chr7.3:25294122-25294141 | MS.gene73748:intron | 60.0% |
| ! | TGCTCGACCGATTCCTGGAG+CGG | - | chr7.3:25294474-25294493 | MS.gene73748:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 25293084 | 25296532 | 25293084 | ID=MS.gene73748 |
| chr7.3 | mRNA | 25293084 | 25296532 | 25293084 | ID=MS.gene73748.t1;Parent=MS.gene73748 |
| chr7.3 | exon | 25296514 | 25296532 | 25296514 | ID=MS.gene73748.t1.exon1;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25296514 | 25296532 | 25296514 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| chr7.3 | exon | 25296372 | 25296439 | 25296372 | ID=MS.gene73748.t1.exon2;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25296372 | 25296439 | 25296372 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| chr7.3 | exon | 25295949 | 25296095 | 25295949 | ID=MS.gene73748.t1.exon3;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25295949 | 25296095 | 25295949 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| chr7.3 | exon | 25295453 | 25295518 | 25295453 | ID=MS.gene73748.t1.exon4;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25295453 | 25295518 | 25295453 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| chr7.3 | exon | 25294886 | 25295005 | 25294886 | ID=MS.gene73748.t1.exon5;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25294886 | 25295005 | 25294886 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| chr7.3 | exon | 25293084 | 25293158 | 25293084 | ID=MS.gene73748.t1.exon6;Parent=MS.gene73748.t1 |
| chr7.3 | CDS | 25293084 | 25293158 | 25293084 | ID=cds.MS.gene73748.t1;Parent=MS.gene73748.t1 |
| Gene Sequence |
| Protein sequence |
