AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060297


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060297.t1 MTR_1g107045 98.264 288 5 0 1 288 1 288 0.0 586
MS.gene060297.t1 MTR_1g107045 95.437 263 12 0 1 263 1 263 0.0 518
MS.gene060297.t1 MTR_1g107045 97.642 212 5 0 1 212 1 212 3.72e-154 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060297.t1 AT4G34270 69.896 289 85 2 1 288 1 288 1.83e-147 415

Find 66 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCTTCTCTTGCAATTC+TGG 0.031355 1.2:+79705194 MS.gene060297:CDS
GTCTTCCCAATGGAGATTTC+CGG 0.291418 1.2:-79704583 None:intergenic
GTTTCTTCTCTTGCAATTCT+GGG 0.297974 1.2:+79705195 MS.gene060297:CDS
GACATCTCATTTACCAGAAA+TGG 0.306200 1.2:+79703921 MS.gene060297:CDS
GCTTGACAACGGGGAGCTTC+TGG 0.307643 1.2:-79706517 None:intergenic
TTGTACTTCGGGAGAGTTGC+TGG 0.338555 1.2:+79705483 MS.gene060297:CDS
CGTATGCATTGTATATTTGC+TGG 0.345472 1.2:+79705446 MS.gene060297:CDS
CACAAATCCTGTTGTACTTC+GGG 0.353319 1.2:+79705472 MS.gene060297:CDS
GAGGATGAACTCGCTGATAA+TGG 0.365438 1.2:+79705023 MS.gene060297:CDS
ATTCTAAAACATTTGAATAG+TGG 0.374855 1.2:+79703964 MS.gene060297:CDS
AGCTTCTGGCTGATGATGCT+TGG 0.388817 1.2:-79706503 None:intergenic
TGAGTAGTACGCTTGACAAC+GGG 0.397774 1.2:-79706527 None:intergenic
GCCGCAGCAGGAACTTCAAC+AGG 0.413392 1.2:-79704048 None:intergenic
ATAGCACCGCTTCCACAATA+AGG 0.414929 1.2:-79704349 None:intergenic
AAGTTCCTGCTGCGGCGAAA+TGG 0.423704 1.2:+79704055 MS.gene060297:CDS
AAAGAAGCAAACGATGGAAT+TGG 0.423986 1.2:+79703638 None:intergenic
AACTTCCATTTCGCCGCAGC+AGG 0.427787 1.2:-79704060 None:intergenic
CGGCGAAATGGAAGTTTAGA+AGG 0.438011 1.2:+79704067 MS.gene060297:CDS
AGAAATTGATTTAGTTGCAT+TGG 0.439296 1.2:+79704614 MS.gene060297:CDS
TGATTACTCTTGAACGGTTG+AGG 0.452835 1.2:-79703778 None:intergenic
CAACTCTCCCGAAGTACAAC+AGG 0.458548 1.2:-79705479 None:intergenic
TCTAATATCACTTCCTCAAA+GGG 0.462313 1.2:-79704304 None:intergenic
AACGGTTGAGGAGTTGAGAA+TGG 0.463074 1.2:-79703766 None:intergenic
TTATACGCTGCAGAATCAAA+AGG 0.466150 1.2:-79706476 None:intergenic
ATAGAAAAGTATAGGCTCCT+TGG 0.468051 1.2:-79704640 None:intergenic
CATGGATGCGAATGCCTCTC+CGG 0.468671 1.2:-79703716 None:intergenic
AGAGAGTCATGCCAAGCTCT+TGG 0.468773 1.2:+79705173 MS.gene060297:intron
GTCACTTCTTACTGTAAAAG+TGG 0.472430 1.2:+79705049 MS.gene060297:CDS
CTAATACAGCTTAGAGTTGA+CGG 0.476886 1.2:+79705398 MS.gene060297:intron
AAGTCTTCGACGACGGTGGC+CGG 0.477533 1.2:+79703697 MS.gene060297:CDS
AGAATCTACATTTCAAGCTC+TGG 0.478818 1.2:+79705508 MS.gene060297:CDS
ACAAAGATTTCTGAGGAAAC+CGG 0.482719 1.2:+79704564 MS.gene060297:CDS
CATTTGATGCTTTATGTGGT+TGG 0.485832 1.2:+79704007 MS.gene060297:CDS
ATCTAATATCACTTCCTCAA+AGG 0.487831 1.2:-79704305 None:intergenic
CGGAGAGGCATTCGCATCCA+TGG 0.489412 1.2:+79703717 MS.gene060297:CDS
GGCGCTGAAGTCTTCGACGA+CGG 0.491989 1.2:+79703690 MS.gene060297:CDS
GCACAAATCCTGTTGTACTT+CGG 0.507906 1.2:+79705471 MS.gene060297:CDS
AGGAAACCGGAAATCTCCAT+TGG 0.511936 1.2:+79704577 MS.gene060297:CDS
AAAGCATTTGATGCTTTATG+TGG 0.512477 1.2:+79704003 MS.gene060297:CDS
TACAGCCTTATAACTTCAAG+AGG 0.516728 1.2:-79706564 None:intergenic
ACAACGCCTTATTGTGGAAG+CGG 0.520421 1.2:+79704343 MS.gene060297:CDS
AATGTGCAGCAAGCCCTTTG+AGG 0.520495 1.2:+79704291 MS.gene060297:intron
ACCTCATCATAGAAAAGTAT+AGG 0.526447 1.2:-79704648 None:intergenic
CTTCCTTGCAGTCTTCCCAA+TGG 0.528278 1.2:-79704593 None:intergenic
TTTAGTTGCATTGGCATCCA+AGG 0.540509 1.2:+79704623 MS.gene060297:CDS
AAGAGAAGAAACCAAGAGCT+TGG 0.554191 1.2:-79705184 None:intergenic
GTCGAAGACTTCAGCGCCGG+CGG 0.562344 1.2:-79703685 None:intergenic
TACATTTCAAGCTCTGGCTG+CGG 0.563110 1.2:+79705514 MS.gene060297:CDS
GAGGCATTCGCATCCATGGT+TGG 0.565923 1.2:+79703721 MS.gene060297:CDS
TCTCCATTGGGAAGACTGCA+AGG 0.572211 1.2:+79704590 MS.gene060297:CDS
GGAAACCGGAAATCTCCATT+GGG 0.574133 1.2:+79704578 MS.gene060297:CDS
TGAACAGGTGGTGCTATATG+AGG 0.576020 1.2:+79705004 MS.gene060297:intron
TATACGCTGCAGAATCAAAA+GGG 0.580871 1.2:-79706475 None:intergenic
ACATTTACAACGCCTTATTG+TGG 0.581460 1.2:+79704337 MS.gene060297:CDS
TGGAATTGATTACTCTTGAA+CGG 0.589845 1.2:-79703784 None:intergenic
GTCGTCGAAGACTTCAGCGC+CGG 0.601946 1.2:-79703688 None:intergenic
TTCGACGACGGTGGCCGGAG+AGG 0.613847 1.2:+79703702 MS.gene060297:CDS
TTGAGTAGTACGCTTGACAA+CGG 0.615166 1.2:-79706528 None:intergenic
GAGAACGACTTGAAAGCCGC+CGG 0.625524 1.2:+79703669 MS.gene060297:CDS
ACCTGTTGAAGTTCCTGCTG+CGG 0.630692 1.2:+79704047 MS.gene060297:CDS
GCAGCAGGAACTTCAACAGG+TGG 0.641693 1.2:-79704045 None:intergenic
GCTGAAGTCTTCGACGACGG+TGG 0.644989 1.2:+79703693 MS.gene060297:CDS
GAATGGGACAAAGATTTCTG+AGG 0.645664 1.2:+79704557 MS.gene060297:intron
GAGACTCGATCAACCAACCA+TGG 0.651642 1.2:-79703734 None:intergenic
GAGTAGTACGCTTGACAACG+GGG 0.687708 1.2:-79706526 None:intergenic
ACGCTGCAGAATCAAAAGGG+TGG 0.704813 1.2:-79706472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGGTATTTAATTTTTTA+TGG + chr1.2:79704532-79704551 MS.gene060297:intron 10.0%
!! ATTCAACATTAAATTTCAAT+GGG - chr1.2:79706145-79706164 None:intergenic 15.0%
!! TATTCAACATTAAATTTCAA+TGG - chr1.2:79706146-79706165 None:intergenic 15.0%
!!! TTAATTTTTTATGGTAGAAT+GGG + chr1.2:79704541-79704560 MS.gene060297:intron 15.0%
!!! TTTAATTTTTTATGGTAGAA+TGG + chr1.2:79704540-79704559 MS.gene060297:intron 15.0%
!! AATATAATATGAGTCTATCA+AGG - chr1.2:79706298-79706317 None:intergenic 20.0%
!! AGAAAAAAAAATGCAAGTTT+AGG - chr1.2:79705362-79705381 None:intergenic 20.0%
!! ATGACTCAAATAAATGAAAA+AGG - chr1.2:79704403-79704422 None:intergenic 20.0%
!! ATTAAAATGAAAACATAGTG+AGG - chr1.2:79706328-79706347 None:intergenic 20.0%
!! CATACTTCCAATTAAATTAA+TGG - chr1.2:79706110-79706129 None:intergenic 20.0%
!! GAGCATAAACTAAATAATTT+GGG - chr1.2:79706067-79706086 None:intergenic 20.0%
!! GTATCTACCATTAATTTAAT+TGG + chr1.2:79706100-79706119 MS.gene060297:intron 20.0%
!! TACTACAAAAAACATTATCA+GGG - chr1.2:79704428-79704447 None:intergenic 20.0%
!! TGAGCATAAACTAAATAATT+TGG - chr1.2:79706068-79706087 None:intergenic 20.0%
!! TTACTACAAAAAACATTATC+AGG - chr1.2:79704429-79704448 None:intergenic 20.0%
!!! ATAATGTTTTTTGTAGTAAG+AGG + chr1.2:79704430-79704449 MS.gene060297:intron 20.0%
!!! ATACATTTTCAGATTTAGTT+TGG - chr1.2:79705959-79705978 None:intergenic 20.0%
!!! ATTCTAAAACATTTGAATAG+TGG + chr1.2:79703964-79703983 MS.gene060297:CDS 20.0%
!!! ATTTATATTTTCTTCCTTGA+TGG + chr1.2:79704949-79704968 MS.gene060297:intron 20.0%
!!! ATTTTTTCCAAGATAACATA+AGG - chr1.2:79704274-79704293 None:intergenic 20.0%
!!! CAAATTAGTGTTACTTTTTT+AGG + chr1.2:79704149-79704168 MS.gene060297:intron 20.0%
!!! TACTATTTTAGTATATGAAG+AGG - chr1.2:79705231-79705250 None:intergenic 20.0%
! AGTTTATGCTCATATCATAA+GGG + chr1.2:79706076-79706095 MS.gene060297:intron 25.0%
! ATAGTTTCATTGTCAACTAT+TGG + chr1.2:79705588-79705607 MS.gene060297:intron 25.0%
! ATGAAATGTAAATACCATCA+AGG - chr1.2:79704966-79704985 None:intergenic 25.0%
! CAATAATTTAGAGATCTCAA+GGG - chr1.2:79706200-79706219 None:intergenic 25.0%
! GGAAAATTTAGTTAGATTAG+TGG - chr1.2:79705938-79705957 None:intergenic 25.0%
! TAGTTTATGCTCATATCATA+AGG + chr1.2:79706075-79706094 MS.gene060297:intron 25.0%
! TAGTTTCATTGTCAACTATT+GGG + chr1.2:79705589-79705608 MS.gene060297:intron 25.0%
! TATTGAGATTGAAAAAGAAC+TGG + chr1.2:79704369-79704388 MS.gene060297:CDS 25.0%
! TGATTGATTACTTGAATAGT+TGG + chr1.2:79705733-79705752 MS.gene060297:intron 25.0%
!! AAGTTTAGAAGGTATGAATT+TGG + chr1.2:79704078-79704097 MS.gene060297:intron 25.0%
!! AGAAATTGATTTAGTTGCAT+TGG + chr1.2:79704614-79704633 MS.gene060297:CDS 25.0%
!! ATTTACCAGAAATGGTTTTT+GGG + chr1.2:79703929-79703948 MS.gene060297:CDS 25.0%
!! CTTTGACTTAGTAGATAAAA+AGG - chr1.2:79705868-79705887 None:intergenic 25.0%
!! CTTTTTATCTACTAAGTCAA+AGG + chr1.2:79705866-79705885 MS.gene060297:intron 25.0%
!! GCTTGCTAAATAATCATTTA+AGG - chr1.2:79704686-79704705 None:intergenic 25.0%
!! TTGTACTATGCTGTTATTTA+TGG + chr1.2:79704515-79704534 MS.gene060297:intron 25.0%
!!! ACTTGCATTTTTTTTTCTTC+TGG + chr1.2:79705364-79705383 MS.gene060297:intron 25.0%
!!! TAGGAATTGTTTTGAAAATC+TGG + chr1.2:79705680-79705699 MS.gene060297:intron 25.0%
AAAAGTGGTAAATACTGATC+TGG + chr1.2:79705064-79705083 MS.gene060297:intron 30.0%
AATGAATTCTCATCATGAAC+AGG + chr1.2:79704989-79705008 MS.gene060297:intron 30.0%
AATGTCAAACGTCTTTCTTA+TGG + chr1.2:79706417-79706436 MS.gene060297:intron 30.0%
ACATTAATATCCAAGTCTGT+CGG - chr1.2:79705303-79705322 None:intergenic 30.0%
AGCAGATAGTTGATTATGAA+AGG + chr1.2:79705835-79705854 MS.gene060297:intron 30.0%
AGTAATCAATCACTATGCTA+AGG - chr1.2:79705725-79705744 None:intergenic 30.0%
ATCTAATATCACTTCCTCAA+AGG - chr1.2:79704308-79704327 None:intergenic 30.0%
GAATACATCTATTCTGATTC+TGG - chr1.2:79704891-79704910 None:intergenic 30.0%
GCAATAATTTAGAGATCTCA+AGG - chr1.2:79706201-79706220 None:intergenic 30.0%
TCTAATATCACTTCCTCAAA+GGG - chr1.2:79704307-79704326 None:intergenic 30.0%
TGGAATTGATTACTCTTGAA+CGG - chr1.2:79703787-79703806 None:intergenic 30.0%
TTGAGAACAAGTCTTTGATT+AGG + chr1.2:79706010-79706029 MS.gene060297:intron 30.0%
! AAAGCATTTGATGCTTTATG+TGG + chr1.2:79704003-79704022 MS.gene060297:CDS 30.0%
! ACCTCATCATAGAAAAGTAT+AGG - chr1.2:79704651-79704670 None:intergenic 30.0%
! ATACTTTTCTATGATGAGGT+AGG + chr1.2:79704651-79704670 MS.gene060297:intron 30.0%
! CATTTACCAGAAATGGTTTT+TGG + chr1.2:79703928-79703947 MS.gene060297:CDS 30.0%
! TTACGTCGCTAAAAAGTTTT+CGG - chr1.2:79705798-79705817 None:intergenic 30.0%
! TTGAATAGTTGGTATAGAGA+AGG + chr1.2:79705744-79705763 MS.gene060297:intron 30.0%
! TTTACCAGAAATGGTTTTTG+GGG + chr1.2:79703930-79703949 MS.gene060297:CDS 30.0%
! TTTGAGTTAACAGATTGCAA+AGG - chr1.2:79706233-79706252 None:intergenic 30.0%
!!! TGTTTTGAAAATCTGGCTTT+TGG + chr1.2:79705687-79705706 MS.gene060297:intron 30.0%
AAAGTTACATCATCAGCACT+TGG - chr1.2:79705143-79705162 None:intergenic 35.0%
AAATAAGTGGGGATGCTTAA+TGG + chr1.2:79705912-79705931 MS.gene060297:intron 35.0%
ACAACTATAACGAACTGATG+GGG - chr1.2:79704772-79704791 None:intergenic 35.0%
AGAATCTACATTTCAAGCTC+TGG + chr1.2:79705508-79705527 MS.gene060297:CDS 35.0%
ATAACATAAGGCTAACAGCA+AGG - chr1.2:79704262-79704281 None:intergenic 35.0%
ATACACTCATACTCGTTTCA+AGG + chr1.2:79706163-79706182 MS.gene060297:intron 35.0%
ATCTGATGATTGATGCAGAA+CGG + chr1.2:79706449-79706468 MS.gene060297:intron 35.0%
ATCTGCTTAGATCATTCTCA+TGG - chr1.2:79705822-79705841 None:intergenic 35.0%
CACAACTATAACGAACTGAT+GGG - chr1.2:79704773-79704792 None:intergenic 35.0%
CATTTGATGCTTTATGTGGT+TGG + chr1.2:79704007-79704026 MS.gene060297:CDS 35.0%
CGTATGCATTGTATATTTGC+TGG + chr1.2:79705446-79705465 MS.gene060297:CDS 35.0%
CGTGAAATTGTTGTCATTGA+TGG + chr1.2:79703872-79703891 MS.gene060297:intron 35.0%
CTAATACAGCTTAGAGTTGA+CGG + chr1.2:79705398-79705417 MS.gene060297:intron 35.0%
GACATCTCATTTACCAGAAA+TGG + chr1.2:79703921-79703940 MS.gene060297:CDS 35.0%
GCATGGTCAACTAGTAAAAA+TGG - chr1.2:79704798-79704817 None:intergenic 35.0%
GTCACTTCTTACTGTAAAAG+TGG + chr1.2:79705049-79705068 MS.gene060297:CDS 35.0%
GTTTCACACTTTCACTAGTA+AGG - chr1.2:79704825-79704844 None:intergenic 35.0%
GTTTCTTCTCTTGCAATTCT+GGG + chr1.2:79705195-79705214 MS.gene060297:CDS 35.0%
TATACGCTGCAGAATCAAAA+GGG - chr1.2:79706478-79706497 None:intergenic 35.0%
TATTCGTGTTTACTTAGCTG+AGG + chr1.2:79704906-79704925 MS.gene060297:intron 35.0%
TCTGCTTAGATCATTCTCAT+GGG - chr1.2:79705821-79705840 None:intergenic 35.0%
TGTAAAGGGAGAAAGAAAGT+GGG + chr1.2:79705615-79705634 MS.gene060297:intron 35.0%
TTATACGCTGCAGAATCAAA+AGG - chr1.2:79706479-79706498 None:intergenic 35.0%
TTCACTAGTAAGGATTTGCA+TGG - chr1.2:79704815-79704834 None:intergenic 35.0%
! ACAAAGATTTCTGAGGAAAC+CGG + chr1.2:79704564-79704583 MS.gene060297:CDS 35.0%
! ACATTTACAACGCCTTATTG+TGG + chr1.2:79704337-79704356 MS.gene060297:CDS 35.0%
! ATAGAAAAGTATAGGCTCCT+TGG - chr1.2:79704643-79704662 None:intergenic 35.0%
! GCCTATACTTTTCTATGATG+AGG + chr1.2:79704647-79704666 MS.gene060297:CDS 35.0%
! TTTTCCCCAAAAACCATTTC+TGG - chr1.2:79703937-79703956 None:intergenic 35.0%
!! ATCCCCACTTATTTTTCTGT+CGG - chr1.2:79705906-79705925 None:intergenic 35.0%
!! ATTTCAATGGGTTGAGATCA+TGG - chr1.2:79706133-79706152 None:intergenic 35.0%
!! CTGTTAGCCTTATGTTATCT+TGG + chr1.2:79704264-79704283 MS.gene060297:intron 35.0%
!! GTGCTGATGATGTAACTTTT+TGG + chr1.2:79705144-79705163 MS.gene060297:intron 35.0%
AAGAGAAGAAACCAAGAGCT+TGG - chr1.2:79705187-79705206 None:intergenic 40.0%
ACTTTGTACTGCTTTAGCAG+AGG + chr1.2:79706367-79706386 MS.gene060297:intron 40.0%
AGATGAATGTGTGCGATGTT+TGG - chr1.2:79703807-79703826 None:intergenic 40.0%
AGTGTTATGTTCAAGCCTCA+TGG + chr1.2:79706253-79706272 MS.gene060297:intron 40.0%
CAACTATTGGGACGTGTAAA+GGG + chr1.2:79705601-79705620 MS.gene060297:intron 40.0%
CACAAATCCTGTTGTACTTC+GGG + chr1.2:79705472-79705491 MS.gene060297:CDS 40.0%
CACCGACAGAAAAATAAGTG+GGG + chr1.2:79705901-79705920 MS.gene060297:intron 40.0%
GAATGGGACAAAGATTTCTG+AGG + chr1.2:79704557-79704576 MS.gene060297:intron 40.0%
GAATTCTCATCATGAACAGG+TGG + chr1.2:79704992-79705011 MS.gene060297:intron 40.0%
GCACAAATCCTGTTGTACTT+CGG + chr1.2:79705471-79705490 MS.gene060297:CDS 40.0%
GCACAACTATAACGAACTGA+TGG - chr1.2:79704774-79704793 None:intergenic 40.0%
GGTTTCTTCTCTTGCAATTC+TGG + chr1.2:79705194-79705213 MS.gene060297:CDS 40.0%
GTGTAAAGGGAGAAAGAAAG+TGG + chr1.2:79705614-79705633 MS.gene060297:intron 40.0%
GTTCTGCATCAATCATCAGA+TGG - chr1.2:79706450-79706469 None:intergenic 40.0%
TCAACTATTGGGACGTGTAA+AGG + chr1.2:79705600-79705619 MS.gene060297:intron 40.0%
TGATTACTCTTGAACGGTTG+AGG - chr1.2:79703781-79703800 None:intergenic 40.0%
TTAAGTGAAGCTACGCAATG+TGG + chr1.2:79705270-79705289 MS.gene060297:intron 40.0%
TTGAGTAGTACGCTTGACAA+CGG - chr1.2:79706531-79706550 None:intergenic 40.0%
! GCACCGACAGAAAAATAAGT+GGG + chr1.2:79705900-79705919 MS.gene060297:intron 40.0%
! GTTGTCATTGATGGTTATGC+AGG + chr1.2:79703881-79703900 MS.gene060297:intron 40.0%
! TCATTGATGGTTATGCAGGT+GGG + chr1.2:79703885-79703904 MS.gene060297:intron 40.0%
! TGCACCGACAGAAAAATAAG+TGG + chr1.2:79705899-79705918 MS.gene060297:intron 40.0%
! TTTAGTTGCATTGGCATCCA+AGG + chr1.2:79704623-79704642 MS.gene060297:CDS 40.0%
AAAAACAGCCCTGACACAAG+GGG - chr1.2:79704708-79704727 None:intergenic 45.0%
AACCACCTGTAGTTTCCATG+AGG - chr1.2:79706271-79706290 None:intergenic 45.0%
AACGGTTGAGGAGTTGAGAA+TGG - chr1.2:79703769-79703788 None:intergenic 45.0%
ACAAAAACAGCCCTGACACA+AGG - chr1.2:79704710-79704729 None:intergenic 45.0%
AGCGTAAAGCACGGTAGAAA+AGG - chr1.2:79705646-79705665 None:intergenic 45.0%
AGGAAACCGGAAATCTCCAT+TGG + chr1.2:79704577-79704596 MS.gene060297:CDS 45.0%
ATAGCACCGCTTCCACAATA+AGG - chr1.2:79704352-79704371 None:intergenic 45.0%
CAAAAACAGCCCTGACACAA+GGG - chr1.2:79704709-79704728 None:intergenic 45.0%
CGGCGAAATGGAAGTTTAGA+AGG + chr1.2:79704067-79704086 MS.gene060297:CDS 45.0%
GAGGATGAACTCGCTGATAA+TGG + chr1.2:79705023-79705042 MS.gene060297:CDS 45.0%
GGAAACCGGAAATCTCCATT+GGG + chr1.2:79704578-79704597 MS.gene060297:CDS 45.0%
GTCTTCCCAATGGAGATTTC+CGG - chr1.2:79704586-79704605 None:intergenic 45.0%
TCAAGCCTCATGGAAACTAC+AGG + chr1.2:79706263-79706282 MS.gene060297:intron 45.0%
TGAGTAGTACGCTTGACAAC+GGG - chr1.2:79706530-79706549 None:intergenic 45.0%
! ACAACGCCTTATTGTGGAAG+CGG + chr1.2:79704343-79704362 MS.gene060297:CDS 45.0%
! ACGCTGAGCTAGTCTATCAT+AGG + chr1.2:79705661-79705680 MS.gene060297:intron 45.0%
! GTCATTGATGGTTATGCAGG+TGG + chr1.2:79703884-79703903 MS.gene060297:intron 45.0%
! TACATTTCAAGCTCTGGCTG+CGG + chr1.2:79705514-79705533 MS.gene060297:CDS 45.0%
!! TAGGCAAAGTGCTGTAAAGC+AGG - chr1.2:79705343-79705362 None:intergenic 45.0%
!! TGAACAGGTGGTGCTATATG+AGG + chr1.2:79705004-79705023 MS.gene060297:intron 45.0%
AATGTGCAGCAAGCCCTTTG+AGG + chr1.2:79704291-79704310 MS.gene060297:intron 50.0%
ACCTGTTGAAGTTCCTGCTG+CGG + chr1.2:79704047-79704066 MS.gene060297:CDS 50.0%
ACGCTGCAGAATCAAAAGGG+TGG - chr1.2:79706475-79706494 None:intergenic 50.0%
AGAGAGTCATGCCAAGCTCT+TGG + chr1.2:79705173-79705192 MS.gene060297:intron 50.0%
AGCCTCATGGAAACTACAGG+TGG + chr1.2:79706266-79706285 MS.gene060297:intron 50.0%
CAACTCTCCCGAAGTACAAC+AGG - chr1.2:79705482-79705501 None:intergenic 50.0%
CTTCCTTGCAGTCTTCCCAA+TGG - chr1.2:79704596-79704615 None:intergenic 50.0%
GAGACTCGATCAACCAACCA+TGG - chr1.2:79703737-79703756 None:intergenic 50.0%
GAGTAGTACGCTTGACAACG+GGG - chr1.2:79706529-79706548 None:intergenic 50.0%
TCTCCATTGGGAAGACTGCA+AGG + chr1.2:79704590-79704609 MS.gene060297:CDS 50.0%
TGGATTGCTTCCGACAGACT+TGG + chr1.2:79705290-79705309 MS.gene060297:intron 50.0%
TTAGCAAGCCCCTTGTGTCA+GGG + chr1.2:79704697-79704716 MS.gene060297:intron 50.0%
TTGTACTTCGGGAGAGTTGC+TGG + chr1.2:79705483-79705502 MS.gene060297:CDS 50.0%
TTTAGCAAGCCCCTTGTGTC+AGG + chr1.2:79704696-79704715 MS.gene060297:intron 50.0%
! AGCTTCTGGCTGATGATGCT+TGG - chr1.2:79706506-79706525 None:intergenic 50.0%
! GACTAGCTCAGCGTAAAGCA+CGG - chr1.2:79705655-79705674 None:intergenic 50.0%
AACTTCCATTTCGCCGCAGC+AGG - chr1.2:79704063-79704082 None:intergenic 55.0%
AAGTTCCTGCTGCGGCGAAA+TGG + chr1.2:79704055-79704074 MS.gene060297:CDS 55.0%
CATGGATGCGAATGCCTCTC+CGG - chr1.2:79703719-79703738 None:intergenic 55.0%
GAGAACGACTTGAAAGCCGC+CGG + chr1.2:79703669-79703688 MS.gene060297:CDS 55.0%
GCAGCAGGAACTTCAACAGG+TGG - chr1.2:79704048-79704067 None:intergenic 55.0%
! GAGGCATTCGCATCCATGGT+TGG + chr1.2:79703721-79703740 MS.gene060297:CDS 55.0%
AAGTCTTCGACGACGGTGGC+CGG + chr1.2:79703697-79703716 MS.gene060297:CDS 60.0%
GCCGCAGCAGGAACTTCAAC+AGG - chr1.2:79704051-79704070 None:intergenic 60.0%
GCTGAAGTCTTCGACGACGG+TGG + chr1.2:79703693-79703712 MS.gene060297:CDS 60.0%
GCTTGACAACGGGGAGCTTC+TGG - chr1.2:79706520-79706539 None:intergenic 60.0%
GTCGTCGAAGACTTCAGCGC+CGG - chr1.2:79703691-79703710 None:intergenic 60.0%
! GGCGCTGAAGTCTTCGACGA+CGG + chr1.2:79703690-79703709 MS.gene060297:CDS 60.0%
!! CGGAGAGGCATTCGCATCCA+TGG + chr1.2:79703717-79703736 MS.gene060297:CDS 60.0%
! GTCGAAGACTTCAGCGCCGG+CGG - chr1.2:79703688-79703707 None:intergenic 65.0%
TTCGACGACGGTGGCCGGAG+AGG + chr1.2:79703702-79703721 MS.gene060297:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 79703651 79706571 79703651 ID=MS.gene060297
chr1.2 mRNA 79703651 79706571 79703651 ID=MS.gene060297.t1;Parent=MS.gene060297
chr1.2 exon 79703651 79703793 79703651 ID=MS.gene060297.t1.exon1;Parent=MS.gene060297.t1
chr1.2 CDS 79703651 79703793 79703651 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79703903 79704088 79703903 ID=MS.gene060297.t1.exon2;Parent=MS.gene060297.t1
chr1.2 CDS 79703903 79704088 79703903 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79704300 79704390 79704300 ID=MS.gene060297.t1.exon3;Parent=MS.gene060297.t1
chr1.2 CDS 79704300 79704390 79704300 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79704558 79704668 79704558 ID=MS.gene060297.t1.exon4;Parent=MS.gene060297.t1
chr1.2 CDS 79704558 79704668 79704558 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79705011 79705070 79705011 ID=MS.gene060297.t1.exon5;Parent=MS.gene060297.t1
chr1.2 CDS 79705011 79705070 79705011 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79705175 79705216 79705175 ID=MS.gene060297.t1.exon6;Parent=MS.gene060297.t1
chr1.2 CDS 79705175 79705216 79705175 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79705407 79705535 79705407 ID=MS.gene060297.t1.exon7;Parent=MS.gene060297.t1
chr1.2 CDS 79705407 79705535 79705407 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
chr1.2 exon 79706467 79706571 79706467 ID=MS.gene060297.t1.exon8;Parent=MS.gene060297.t1
chr1.2 CDS 79706467 79706571 79706467 ID=cds.MS.gene060297.t1;Parent=MS.gene060297.t1
Gene Sequence

>MS.gene060297

ATGGAATTGGAAGTCGACGAGAACGACTTGAAAGCCGCCGGCGCTGAAGTCTTCGACGACGGTGGCCGGAGAGGCATTCGCATCCATGGTTGGTTGATCGAGTCTCGTACTAACTCCATTCTCAACTCCTCAACCGTTCAAGAGTAATCAATTCCAAACATCGCACACATTCATCTCAATTTTTCGAATCGAAACAATTTATAGATTTAATTCAACATTATCGTGAAATTGTTGTCATTGATGGTTATGCAGGTGGGAAAAGAAACTTGAGACATCTCATTTACCAGAAATGGTTTTTGGGGAAAACACTTTAATTCTAAAACATTTGAATAGTGGCACTAAAATTCACTTTAAAGCATTTGATGCTTTATGTGGTTGGAAACAAGAAGCTTTGCCACCTGTTGAAGTTCCTGCTGCGGCGAAATGGAAGTTTAGAAGGTATGAATTTGGAGTATTTTGATGCAAAATTGTAATTTTTATGTTTTAGAATGTTTAGCTCAAATTAGTGTTACTTTTTTAGGAATTTTTTTATTTACTATGAAAATTAAATGTTAAATTTGTTAATCAACTGTGATAAATATCTCGACAATTGAAATTGATATAAATGACCTTGCTGTTAGCCTTATGTTATCTTGGAAAAAATGTGCAGCAAGCCCTTTGAGGAAGTGATATTAGATTACGACTATACATTTACAACGCCTTATTGTGGAAGCGGTGCTATTGAGATTGAAAAAGAACTGGTATACATTCCTTTTTCATTTATTTGAGTCATTACCCTGATAATGTTTTTTGTAGTAAGAGGTTTTGCTGCATGCAGTTGTTTGTAGTGCATTAATGAACGCTACATGTTTTGATCAATAATATTTGTACTATGCTGTTATTTATGGTATTTAATTTTTTATGGTAGAATGGGACAAAGATTTCTGAGGAAACCGGAAATCTCCATTGGGAAGACTGCAAGGAAGAAATTGATTTAGTTGCATTGGCATCCAAGGAGCCTATACTTTTCTATGATGAGGTAGGTAGTGAGTACCTTAAATGATTATTTAGCAAGCCCCTTGTGTCAGGGCTGTTTTTGTCAACAAATCTTCTCGTGTTCATGAAATATGTGCTCAAGTCCCCATCAGTTCGTTATAGTTGTGCTCCATTTTTACTAGTTGACCATGCAAATCCTTACTAGTGAAAGTGTGAAACATGCTACGTGCGCACACACACACACACACACATTAATAATGTTCCAGAATCAGAATAGATGTATTCGTGTTTACTTAGCTGAGGTATCTGACATGCAGTATATTATTTATATTTTCTTCCTTGATGGTATTTACATTTCATTAGAATGAATTCTCATCATGAACAGGTGGTGCTATATGAGGATGAACTCGCTGATAATGGAGTGTCACTTCTTACTGTAAAAGTGGTAAATACTGATCTGGTTTCTTCTGTTGATAGATTGTTCATTTTTTGTTTATGCAAATTACTGTGATTTCCAAGTGCTGATGATGTAACTTTTTGGTTTTATAGAGAGTCATGCCAAGCTCTTGGTTTCTTCTCTTGCAATTCTGGGTGAGTTACTTCCTCTTCATATACTAAAATAGTAAATTTCGTCATTAAGTTTTTTAAGTGAAGCTACGCAATGTGGATTGCTTCCGACAGACTTGGATATTAATGTCAGTGTCAGCACATTTACCTGCTTTACAGCACTTTGCCTAAACTTGCATTTTTTTTTCTTCTGGTTGCTCTGATACTAATACAGCTTAGAGTTGACGGTGTGTTGATTCGACTGAGAGAAACTCGTATGCATTGTATATTTGCTGGAAGCACAAATCCTGTTGTACTTCGGGAGAGTTGCTGGAGAGAATCTACATTTCAAGCTCTGGCTGCGGTAAGTTTGTGCTATGTATCACATGCTATGTTCTTCACATGAACTCTGACTGATAGTTTCATTGTCAACTATTGGGACGTGTAAAGGGAGAAAGAAAGTGGGTGCATCCTTTTCTACCGTGCTTTACGCTGAGCTAGTCTATCATAGGAATTGTTTTGAAAATCTGGCTTTTGGTTGTCAAAATCTCCTTAGCATAGTGATTGATTACTTGAATAGTTGGTATAGAGAAGGATTTGTTGAACAACTAATTTTTTTATAACCGAAAACTTTTTAGCGACGTAACCCATGAGAATGATCTAAGCAGATAGTTGATTATGAAAGGTATCACTCCTTTTTATCTACTAAGTCAAAGGTAATATACTTTGCACCGACAGAAAAATAAGTGGGGATGCTTAATGGCCACTAATCTAACTAAATTTTCCAAACTAAATCTGAAAATGTATTATATTAAATTAAATGACAATTATAAGTTTATTGAGAACAAGTCTTTGATTAGGAAGAATTGACAAAAGCGACATCAGTTTAATTCCCAAATTATTTAGTTTATGCTCATATCATAAGGGTGTATCTACCATTAATTTAATTGGAAGTATGCCATGATCTCAACCCATTGAAATTTAATGTTGAATACACTCATACTCGTTTCAAGGAAGTTTTGTTTCCCTTGAGATCTCTAAATTATTGCTCATTATTTCCTTTGCAATCTGTTAACTCAAAAGTGTTATGTTCAAGCCTCATGGAAACTACAGGTGGTTGTGACCTTGATAGACTCATATTATATTAGTGTTTCCTCACTATGTTTTCATTTTAATTTTTTACTGTTTTAATTTCACTTTGTACTGCTTTAGCAGAGGTATTATTTACAACTATAGTTACAATGTAATGTCAAACGTCTTTCTTATGGTGCTTGACCATCTGATGATTGATGCAGAACGGCCACCCTTTTGATTCTGCAGCGTATAATGATCCAAGCATCATCAGCCAGAAGCTCCCCGTTGTCAAGCGTACTACTCAAAAGCTTGTAATTTCCTCTTGA

Protein sequence

>MS.gene060297.t1

MELEVDENDLKAAGAEVFDDGGRRGIRIHGWLIESRTNSILNSSTVQEWEKKLETSHLPEMVFGENTLILKHLNSGTKIHFKAFDALCGWKQEALPPVEVPAAAKWKFRSKPFEEVILDYDYTFTTPYCGSGAIEIEKELNGTKISEETGNLHWEDCKEEIDLVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLQFWLRVDGVLIRLRETRMHCIFAGSTNPVVLRESCWRESTFQALAANGHPFDSAAYNDPSIISQKLPVVKRTTQKLVISS