AlfalfaGEDB | MS.gene057451

M. sativa cultivar XinJiangDaYe / MS.gene057451

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057451.t1	XP_013447567.1	84.6	130	18	2	1	130	500	627	4.10E-27	131

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057451.t1	A0A072TWR4	84.6	130	18	2	1	130	500	627	3.0e-27	131.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene057451	-0.804568	2.03E-49	-1.69E-46
MS.gene050114	MS.gene057451	-0.82131	4.32E-53	-1.69E-46
MS.gene050762	MS.gene057451	-0.801095	1.06E-48	-1.69E-46
MS.gene050763	MS.gene057451	-0.80092	1.15E-48	-1.69E-46
MS.gene051245	MS.gene057451	-0.818831	1.60E-52	-1.69E-46
MS.gene052242	MS.gene057451	0.817292	3.56E-52	-1.69E-46
MS.gene056752	MS.gene057451	-0.803232	3.85E-49	-1.69E-46
MS.gene056849	MS.gene057451	-0.804557	2.04E-49	-1.69E-46
MS.gene057451	MS.gene057452	0.943321	1.49E-102	-1.69E-46
MS.gene057451	MS.gene058661	0.84399	9.97E-59	-1.69E-46
MS.gene057451	MS.gene059872	0.810068	1.39E-50	-1.69E-46
MS.gene057451	MS.gene060084	-0.806642	7.45E-50	-1.69E-46
MS.gene057451	MS.gene060297	-0.829126	6.13E-55	-1.69E-46
MS.gene057451	MS.gene060869	-0.815764	7.82E-52	-1.69E-46
MS.gene057451	MS.gene061004	-0.80471	1.90E-49	-1.69E-46
MS.gene057451	MS.gene063469	0.804705	1.90E-49	-1.69E-46
MS.gene057451	MS.gene067029	-0.807913	4.01E-50	-1.69E-46
MS.gene057451	MS.gene068683	0.80871	2.71E-50	-1.69E-46
MS.gene057451	MS.gene069571	0.831471	1.64E-55	-1.69E-46
MS.gene057451	MS.gene072386	-0.812162	4.87E-51	-1.69E-46
MS.gene057451	MS.gene072564	-0.823323	1.47E-53	-1.69E-46
MS.gene057451	MS.gene072565	-0.824704	6.99E-54	-1.69E-46
MS.gene057451	MS.gene072732	-0.811964	5.38E-51	-1.69E-46
MS.gene057451	MS.gene072969	-0.830715	2.51E-55	-1.69E-46
MS.gene057451	MS.gene072970	-0.813226	2.85E-51	-1.69E-46
MS.gene057451	MS.gene073564	-0.809483	1.85E-50	-1.69E-46
MS.gene057451	MS.gene08894	-0.809842	1.55E-50	-1.69E-46
MS.gene057451	MS.gene09032	-0.818406	1.99E-52	-1.69E-46
MS.gene057451	MS.gene20407	0.862776	3.99E-64	-1.69E-46
MS.gene057451	MS.gene21659	-0.82033	7.26E-53	-1.69E-46
MS.gene057451	MS.gene22314	-0.826106	3.25E-54	-1.69E-46
MS.gene057451	MS.gene22545	-0.823144	1.62E-53	-1.69E-46
MS.gene057451	MS.gene23484	-0.802904	4.50E-49	-1.69E-46
MS.gene057451	MS.gene23961	-0.824887	6.33E-54	-1.69E-46
MS.gene057451	MS.gene24227	-0.832328	1.01E-55	-1.69E-46
MS.gene057451	MS.gene24541	0.817684	2.90E-52	-1.69E-46
MS.gene057451	MS.gene27228	-0.800829	1.20E-48	-1.69E-46
MS.gene057451	MS.gene29047	-0.814055	1.87E-51	-1.69E-46
MS.gene057451	MS.gene29109	-0.805107	1.57E-49	-1.69E-46
MS.gene057451	MS.gene30668	-0.827996	1.15E-54	-1.69E-46
MS.gene057451	MS.gene30792	0.886353	3.68E-72	-1.69E-46
MS.gene057451	MS.gene32973	0.815556	8.70E-52	-1.69E-46
MS.gene057451	MS.gene35030	-0.802536	5.36E-49	-1.69E-46
MS.gene057451	MS.gene36124	-0.811518	6.73E-51	-1.69E-46
MS.gene057451	MS.gene36147	-0.801981	6.97E-49	-1.69E-46
MS.gene057451	MS.gene36482	-0.815144	1.07E-51	-1.69E-46
MS.gene057451	MS.gene37434	0.829487	5.01E-55	-1.69E-46
MS.gene057451	MS.gene37653	-0.828673	7.89E-55	-1.69E-46
MS.gene057451	MS.gene38070	-0.808181	3.51E-50	-1.69E-46
MS.gene057451	MS.gene38786	-0.801719	7.89E-49	-1.69E-46
MS.gene057451	MS.gene39313	-0.838286	3.15E-57	-1.69E-46
MS.gene057451	MS.gene40917	0.812029	5.21E-51	-1.69E-46
MS.gene057451	MS.gene44260	-0.804131	2.50E-49	-1.69E-46
MS.gene057451	MS.gene48393	0.847642	1.02E-59	-1.69E-46
MS.gene057451	MS.gene49939	0.808114	3.63E-50	-1.69E-46
MS.gene057451	MS.gene52153	-0.824612	7.35E-54	-1.69E-46
MS.gene057451	MS.gene52973	-0.816862	4.44E-52	-1.69E-46
MS.gene057451	MS.gene55575	0.803677	3.11E-49	-1.69E-46
MS.gene057451	MS.gene56493	-0.834562	2.79E-56	-1.69E-46
MS.gene057451	MS.gene56931	0.818206	2.21E-52	-1.69E-46
MS.gene057451	MS.gene56980	-0.806508	7.95E-50	-1.69E-46
MS.gene057451	MS.gene58616	-0.824939	6.15E-54	-1.69E-46
MS.gene057451	MS.gene59358	-0.801869	7.35E-49	-1.69E-46
MS.gene057451	MS.gene60300	-0.805785	1.13E-49	-1.69E-46
MS.gene057451	MS.gene63281	-0.800348	1.50E-48	-1.69E-46
MS.gene057451	MS.gene66408	-0.801495	8.77E-49	-1.69E-46
MS.gene057451	MS.gene68171	-0.817943	2.54E-52	-1.69E-46
MS.gene057451	MS.gene68877	-0.817592	3.04E-52	-1.69E-46
MS.gene057451	MS.gene68933	-0.803672	3.12E-49	-1.69E-46
MS.gene057451	MS.gene68959	-0.809196	2.13E-50	-1.69E-46
MS.gene057451	MS.gene69304	0.829713	4.41E-55	-1.69E-46
MS.gene057451	MS.gene69314	-0.81559	8.55E-52	-1.69E-46
MS.gene057451	MS.gene70314	-0.803365	3.61E-49	-1.69E-46
MS.gene057451	MS.gene70514	-0.805066	1.60E-49	-1.69E-46
MS.gene057451	MS.gene73748	-0.800516	1.39E-48	-1.69E-46
MS.gene057451	MS.gene76478	-0.821835	3.27E-53	-1.69E-46
MS.gene057451	MS.gene78706	0.813525	2.45E-51	-1.69E-46
MS.gene057451	MS.gene81715	-0.817671	2.92E-52	-1.69E-46
MS.gene057451	MS.gene82350	-0.83041	2.98E-55	-1.69E-46
MS.gene057451	MS.gene82352	-0.82365	1.24E-53	-1.69E-46
MS.gene057451	MS.gene82624	-0.841404	4.85E-58	-1.69E-46
MS.gene057451	MS.gene82976	-0.820859	5.49E-53	-1.69E-46
MS.gene057451	MS.gene82978	-0.812675	3.76E-51	-1.69E-46
MS.gene057451	MS.gene82983	-0.817893	2.60E-52	-1.69E-46
MS.gene057451	MS.gene84632	0.800866	1.18E-48	-1.69E-46
MS.gene057451	MS.gene88976	-0.838738	2.41E-57	-1.69E-46
MS.gene057451	MS.gene89677	-0.806366	8.52E-50	-1.69E-46
MS.gene057451	MS.gene90965	-0.809838	1.55E-50	-1.69E-46
MS.gene057451	MS.gene91625	0.839463	1.56E-57	-1.69E-46
MS.gene057451	MS.gene95280	0.800083	1.70E-48	-1.69E-46
MS.gene057451	MS.gene96220	-0.816736	4.74E-52	-1.69E-46
MS.gene057451	MS.gene99313	-0.803338	3.66E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057451.t1	MTR_7g013700	85.385	130	17	2	1	130	500	627	7.11e-44	151

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCAGTTGAATCATAAAATTT+AGG	+	51469:13355-13374	MS.gene057451:intergenic	20.0%
!!!	TTAGATTTGTTTGTAACTTT+AGG	-	51469:13599-13618	MS.gene057451:CDS	20.0%
!	AGCATTACAAAGTCAATTAA+AGG	+	51469:13561-13580	MS.gene057451:intergenic	25.0%
!	GCATTACAAAGTCAATTAAA+GGG	+	51469:13560-13579	MS.gene057451:intergenic	25.0%
!	GTTGAATCATAAAATTTAGG+TGG	+	51469:13352-13371	MS.gene057451:intergenic	25.0%
	AAAACCTAGTGAAAGATATG+AGG	-	51469:13186-13205	MS.gene057451:CDS	30.0%
	AAACCTAGTGAAAGATATGA+GGG	-	51469:13187-13206	MS.gene057451:CDS	30.0%
	AAGACAAGAGCAATAGTTTA+CGG	-	51469:13386-13405	MS.gene057451:intron	30.0%
	AGATACTTTAGTCAAGCTAA+TGG	-	51469:13632-13651	MS.gene057451:CDS	30.0%
	GAATCATAAAATTTAGGTGG+AGG	+	51469:13349-13368	MS.gene057451:intergenic	30.0%
	TTAGTCAAGCTAATGGAATA+TGG	-	51469:13639-13658	MS.gene057451:CDS	30.0%
	AAGCAAGTTAAATGCTAACC+AGG	+	51469:13433-13452	MS.gene057451:intergenic	35.0%
	TCATAAAATTTAGGTGGAGG+AGG	+	51469:13346-13365	MS.gene057451:intergenic	35.0%
	AAGCCCTCATATCTTTCACT+AGG	+	51469:13193-13212	MS.gene057451:intergenic	40.0%
	ACAAAATCTGATGCAGTTCC+TGG	-	51469:13412-13431	MS.gene057451:intron	40.0%
	TAAAATTTAGGTGGAGGAGG+TGG	+	51469:13343-13362	MS.gene057451:intergenic	40.0%
	TAGTGAAAGATATGAGGGCT+TGG	-	51469:13192-13211	MS.gene057451:CDS	40.0%
!!	TTACCGTCTGCTTTTAAGTG+TGG	-	51469:13534-13553	MS.gene057451:CDS	40.0%
!	AAGCCTTTCTGGGCTTTATG+AGG	-	51469:13744-13763	MS.gene057451:CDS	45.0%
!	CTTTTGAGCCCCAATTGCTT+GGG	+	51469:13727-13746	MS.gene057451:intergenic	45.0%
!!	ATAGCTCTTTTTGGAGGAGG+TGG	+	51469:13313-13332	MS.gene057451:intergenic	45.0%
	AATTTAGGTGGAGGAGGTGG+TGG	+	51469:13340-13359	MS.gene057451:intergenic	50.0%
	ATTTAGGTGGAGGAGGTGGT+GGG	+	51469:13339-13358	MS.gene057451:intergenic	50.0%
	GGGCCACACTTAAAAGCAGA+CGG	+	51469:13540-13559	MS.gene057451:intergenic	50.0%
	GGTGGCTGGATCAACTTCTT+GGG	+	51469:13247-13266	MS.gene057451:intergenic	50.0%
	TGGATCAACTTCTTGGGAGC+AGG	+	51469:13241-13260	MS.gene057451:intergenic	50.0%
	TGGGGCTCAAAAGCCTTTCT+GGG	-	51469:13734-13753	MS.gene057451:CDS	50.0%
	TTGGGGCTCAAAAGCCTTTC+TGG	-	51469:13733-13752	MS.gene057451:CDS	50.0%
!	ATAGTTCTTGGTGGAGGTGC+TGG	+	51469:13283-13302	MS.gene057451:intergenic	50.0%
!	GCTTTTGAGCCCCAATTGCT+TGG	+	51469:13728-13747	MS.gene057451:intergenic	50.0%
!!	GGCATAGCTCTTTTTGGAGG+AGG	+	51469:13316-13335	MS.gene057451:intergenic	50.0%
	CGGTGGCTGGATCAACTTCT+TGG	+	51469:13248-13267	MS.gene057451:intergenic	55.0%
	CTTGCCCCACCCAAGCAATT+GGG	-	51469:13715-13734	MS.gene057451:CDS	55.0%
	GATATGAGGGCTTGGCTGTG+AGG	-	51469:13200-13219	MS.gene057451:CDS	55.0%
	TGAGCCCCAATTGCTTGGGT+GGG	+	51469:13723-13742	MS.gene057451:intergenic	55.0%
	TTGAGCCCCAATTGCTTGGG+TGG	+	51469:13724-13743	MS.gene057451:intergenic	55.0%
	TTGATCCAGCCACCGTCCAA+CGG	-	51469:13253-13272	MS.gene057451:CDS	55.0%
	TTGCCCCACCCAAGCAATTG+GGG	-	51469:13716-13735	MS.gene057451:CDS	55.0%
	TTTAGGTGGAGGAGGTGGTG+GGG	+	51469:13338-13357	MS.gene057451:intergenic	55.0%
!	GGAGGCATAGTTCTTGGTGG+AGG	+	51469:13289-13308	MS.gene057451:intergenic	55.0%
!	GGTGCTGGAAATCCGTTGGA+CGG	+	51469:13268-13287	MS.gene057451:intergenic	55.0%
!	GGTGGAGGCATAGTTCTTGG+TGG	+	51469:13292-13311	MS.gene057451:intergenic	55.0%
!!	CTTTTTGGAGGAGGTGGTGG+AGG	+	51469:13307-13326	MS.gene057451:intergenic	55.0%
!!	GCTCTTTTTGGAGGAGGTGG+TGG	+	51469:13310-13329	MS.gene057451:intergenic	55.0%
!!	GGGGGCATAGCTCTTTTTGG+AGG	+	51469:13319-13338	MS.gene057451:intergenic	55.0%
!!	GGTGGGGGCATAGCTCTTTT+TGG	+	51469:13322-13341	MS.gene057451:intergenic	55.0%
!!	GGTGGTGGAGGCATAGTTCT+TGG	+	51469:13295-13314	MS.gene057451:intergenic	55.0%
!!	TGGAGGTGCTGGAAATCCGT+TGG	+	51469:13272-13291	MS.gene057451:intergenic	55.0%
	ATTGCTTGGGTGGGGCAAGG+AGG	+	51469:13714-13733	MS.gene057451:intergenic	60.0%
	CCAATTGCTTGGGTGGGGCA+AGG	+	51469:13717-13736	MS.gene057451:intergenic	60.0%
	CCTTGCCCCACCCAAGCAAT+TGG	-	51469:13714-13733	MS.gene057451:CDS	60.0%
	GAAATCCGTTGGACGGTGGC+TGG	+	51469:13261-13280	MS.gene057451:intergenic	60.0%
	GAGCCCCAATTGCTTGGGTG+GGG	+	51469:13722-13741	MS.gene057451:intergenic	60.0%
	GCTGGAAATCCGTTGGACGG+TGG	+	51469:13265-13284	MS.gene057451:intergenic	60.0%
!	TTAGGTGGAGGAGGTGGTGG+GGG	+	51469:13337-13356	MS.gene057451:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
51469	gene	13172	13764	13172	ID=MS.gene057451
51469	mRNA	13172	13764	13172	ID=MS.gene057451.t1;Parent=MS.gene057451
51469	exon	13503	13764	13503	ID=MS.gene057451.t1.exon1;Parent=MS.gene057451.t1
51469	CDS	13503	13764	13503	ID=cds.MS.gene057451.t1;Parent=MS.gene057451.t1
51469	exon	13172	13302	13172	ID=MS.gene057451.t1.exon2;Parent=MS.gene057451.t1
51469	CDS	13172	13302	13172	ID=cds.MS.gene057451.t1;Parent=MS.gene057451.t1

Gene Sequence

>MS.gene057451

GGATCGGAACTTCTAAAACCTAGTGAAAGATATGAGGGCTTGGCTGTGAGGAATATATCGACTATGCCTGCTCCCAAGAAGTTGATCCAGCCACCGTCCAACGGATTTCCAGCACCTCCACCAAGAACTATGCCTCCACCACCTCCTCCAAAAAGAGCTATGCCCCCACCACCTCCTCCACCTAAATTTTATGATTCAACTGAAGTTAAAGTACAAGACAAGAGCAATAGTTTACGGAAGACAAAATCTGATGCAGTTCCTGGTTAGCATTTAACTTGCTTTTACTGAAATGAACAACTTTAATATTGTTTTAGATGTGTCATTATATGTTCTCTCTATAATGTGTAGTATGTATGAAACTTTTACCGTCTGCTTTTAAGTGTGGCCCTTTAATTGACTTTGTAATGCTTTCTTTATTGTGCATCTTTTAGATTTGTTTGTAACTTTAGGTATTTATTTCAGATACTTTAGTCAAGCTAATGGAATATGGTGACGACGACGATGACGATGATGATCTAGACGATTCAAATGAGAAAATGCCTCCTTGCCCCACCCAAGCAATTGGGGCTCAAAAGCCTTTCTGGGCTTTATGA

Protein sequence

>MS.gene057451.t1

GSELLKPSERYEGLAVRNISTMPAPKKLIQPPSNGFPAPPPRTMPPPPPPKRAMPPPPPPPKFYDSTEVKVQDKSNSLRKTKSDAVPDTLVKLMEYGDDDDDDDDLDDSNEKMPPCPTQAIGAQKPFWAL