AlfalfaGEDB | MS.gene73889

M. sativa cultivar XinJiangDaYe / MS.gene73889

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73889.t1	AES71738.2	85.4	103	15	0	1	103	1	103	4.70E-42	180.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73889.t1	F4JDJ0	40.0	85	50	1	1	85	7	90	9.0e-10	64.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73889.t1	G7J841	85.4	103	15	0	1	103	1	103	3.4e-42	180.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052902	MS.gene73889	0.829606	4.68E-55	-1.69E-46
MS.gene053356	MS.gene73889	0.836271	1.03E-56	-1.69E-46
MS.gene058426	MS.gene73889	0.805314	1.42E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73889.t1	MTR_3g082210	85.437	103	15	0	1	103	1	103	2.88e-53	162
MS.gene73889.t1	MTR_3g082250	69.444	108	24	3	1	103	12	115	1.02e-42	135
MS.gene73889.t1	MTR_1g041690	60.185	108	36	3	1	103	1	106	5.70e-35	115
MS.gene73889.t1	MTR_3g082260	58.333	108	38	3	1	103	1	106	3.61e-33	111
MS.gene73889.t1	MTR_5g007070	70.732	82	12	1	1	70	15	96	1.30e-31	107
MS.gene73889.t1	MTR_5g084660	43.200	125	47	5	1	102	10	133	6.57e-18	73.6
MS.gene73889.t1	MTR_0635s0010	50.769	65	32	0	1	65	9	73	1.05e-16	68.6
MS.gene73889.t1	MTR_2g027600	50.769	65	32	0	1	65	11	75	1.10e-16	68.9
MS.gene73889.t1	MTR_6g082190	47.170	53	28	0	1	53	1	53	5.10e-12	59.7
MS.gene73889.t1	MTR_6g082330	43.750	64	36	0	1	64	11	74	4.61e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73889.t1	AT3G20180	40.000	85	50	1	1	85	7	90	3.53e-14	63.5
MS.gene73889.t1	AT3G20180	40.000	85	50	1	1	85	9	92	3.90e-14	63.5
MS.gene73889.t1	AT3G20180	40.000	85	50	1	1	85	11	94	4.49e-14	63.5
MS.gene73889.t1	AT3G20180	44.737	76	40	1	1	74	30	105	5.32e-14	63.5
MS.gene73889.t1	AT5G48290	48.649	74	35	1	1	71	1	74	7.15e-14	63.9
MS.gene73889.t1	AT5G48290	48.649	74	35	1	1	71	11	84	7.90e-14	63.9
MS.gene73889.t1	AT3G07600	44.928	69	38	0	1	69	11	79	1.80e-13	62.8

Find 0 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAGAAAGAAGAACCAATTA+TGG	-	24212:3068-3087	MS.gene73889:intron	25.0%
!	AAGGATCAAATAGAAGTAAT+CGG	-	24212:2949-2968	MS.gene73889:CDS	25.0%
!	AATCATGTCCAAAAATATTC+AGG	-	24212:2895-2914	MS.gene73889:CDS	25.0%
!	TAGTTTGGATAATTAAGCTA+TGG	+	24212:2876-2895	MS.gene73889:intergenic	25.0%
!!!	ATTTTTGGACATGATTAGTT+TGG	+	24212:2891-2910	MS.gene73889:intergenic	25.0%
!	TTTCCACTCCTGAATATTTT+TGG	+	24212:2906-2925	MS.gene73889:intergenic	30.0%
	AAGAAGAACCAATTATGGCA+TGG	-	24212:3073-3092	MS.gene73889:intron	35.0%
	GAAATTCTGTCATGCAGAAT+TGG	-	24212:3014-3033	MS.gene73889:intron	35.0%
	TGGTGAAGTGAAAAAGAAAG+AGG	-	24212:3044-3063	MS.gene73889:intron	35.0%
	TGTCCAAAAATATTCAGGAG+TGG	-	24212:2900-2919	MS.gene73889:CDS	35.0%
!!	TAGCAGTTTTGTGAGTCTAA+CGG	+	24212:2989-3008	MS.gene73889:intergenic	35.0%
	AAAGCCATGAAGATTGCAGT+TGG	-	24212:2782-2801	MS.gene73889:CDS	40.0%
	AACTCCAACTGCAATCTTCA+TGG	+	24212:2789-2808	MS.gene73889:intergenic	40.0%
	AACTGCAATCTTCATGGCTT+TGG	+	24212:2783-2802	MS.gene73889:intergenic	40.0%
	AAGATTGCAGTTGGAGTTTC+AGG	-	24212:2791-2810	MS.gene73889:CDS	40.0%
	AGCAATACAAGGAGATAGCA+AGG	-	24212:2930-2949	MS.gene73889:CDS	40.0%
	TGAGGATAACCAGTTACACA+AGG	+	24212:3099-3118	MS.gene73889:intergenic	40.0%
!!!	TGGCTTTGGACCTTGATTTT+TGG	+	24212:2769-2788	MS.gene73889:intergenic	40.0%
	ACACAAGGCCATGCCATAAT+TGG	+	24212:3084-3103	MS.gene73889:intergenic	45.0%
	CATGCAGAATTGGTGAGTGT+TGG	-	24212:3024-3043	MS.gene73889:intron	45.0%
	TGTCCCTGTGTGTGAGATAA+GGG	-	24212:3125-3144	MS.gene73889:CDS	45.0%
	TTATCTCACACACAGGGACA+GGG	+	24212:3125-3144	MS.gene73889:intergenic	45.0%
!	GTGGAAAGTGCAGCAATACA+AGG	-	24212:2919-2938	MS.gene73889:CDS	45.0%
!!	TTTGAATTAAAAATAATTAA+TGG	+	24212:2841-2860	MS.gene73889:intergenic	5.0%
	CGTCCCTTATCTCACACACA+GGG	+	24212:3131-3150	MS.gene73889:intergenic	50.0%
	CTGTCCCTGTGTGTGAGATA+AGG	-	24212:3124-3143	MS.gene73889:CDS	50.0%
	CTTATCTCACACACAGGGAC+AGG	+	24212:3126-3145	MS.gene73889:intergenic	50.0%
	TCGTCCCTTATCTCACACAC+AGG	+	24212:3132-3151	MS.gene73889:intergenic	50.0%
!!	ATGGCATGGCCTTGTGTAAC+TGG	-	24212:3087-3106	MS.gene73889:intron	50.0%
	CACACAGGGACAGGGTAATG+AGG	+	24212:3117-3136	MS.gene73889:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
24212	gene	2758	3173	2758	ID=MS.gene73889
24212	mRNA	2758	3173	2758	ID=MS.gene73889.t1;Parent=MS.gene73889
24212	exon	3119	3173	3119	ID=MS.gene73889.t1.exon1;Parent=MS.gene73889.t1
24212	CDS	3119	3173	3119	ID=cds.MS.gene73889.t1;Parent=MS.gene73889.t1
24212	exon	2758	3014	2758	ID=MS.gene73889.t1.exon2;Parent=MS.gene73889.t1
24212	CDS	2758	3014	2758	ID=cds.MS.gene73889.t1;Parent=MS.gene73889.t1

Gene Sequence

>MS.gene73889

ATGCACAGCCAAAAATCAAGGTCCAAAGCCATGAAGATTGCAGTTGGAGTTTCAGGTAATAAAATTCACTGATTTTGTCACCATTAATTATTTTTAATTCAAAATTTGTTCATAACCATAGCTTAATTATCCAAACTAATCATGTCCAAAAATATTCAGGAGTGGAAAGTGCAGCAATACAAGGAGATAGCAAGGATCAAATAGAAGTAATCGGAGAACAAATAGACTCCGTTAGACTCACAAAACTGCTAAGAAAGAAATTCTGTCATGCAGAATTGGTGAGTGTTGGTGAAGTGAAAAAGAAAGAGGAAAAGAAAGAAGAACCAATTATGGCATGGCCTTGTGTAACTGGTTATCCTCATTACCCTGTCCCTGTGTGTGAGATAAGGGACGACTCTTCTTGTTCCATCATGTGA

Protein sequence

>MS.gene73889.t1

MHSQKSRSKAMKIAVGVSGVESAAIQGDSKDQIEVIGEQIDSVRLTKLLRKKFCHAELVSVGEVKKKEEKKEEPIMAWPCVTGYPHYPVPVCEIRDDSSCSIM