Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74142.t1 | AES78183.1 | 81.3 | 475 | 32 | 1 | 2 | 419 | 83 | 557 | 4.90E-215 | 756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74142.t1 | Q9LQM1 | 26.5 | 196 | 121 | 9 | 12 | 199 | 57 | 237 | 6.5e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74142.t1 | G7KYZ0 | 81.3 | 475 | 32 | 1 | 2 | 419 | 83 | 557 | 3.6e-215 | 756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052519 | MS.gene74142 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene74142 | 0.810752 | 9.86E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene74142 | 0.823388 | 1.42E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene74142 | 0.818362 | 2.04E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene74142 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene74142 | 0.8055 | 1.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74142.t1 | MTR_7g025650 | 81.053 | 475 | 33 | 2 | 2 | 419 | 83 | 557 | 0.0 | 750 |
| MS.gene74142.t1 | MTR_4g119700 | 77.591 | 357 | 77 | 2 | 2 | 355 | 70 | 426 | 0.0 | 540 |
| MS.gene74142.t1 | MTR_4g119700 | 61.905 | 84 | 30 | 2 | 337 | 419 | 464 | 546 | 5.61e-22 | 98.6 |
| MS.gene74142.t1 | MTR_8g015830 | 60.700 | 486 | 117 | 7 | 2 | 418 | 72 | 552 | 0.0 | 519 |
| MS.gene74142.t1 | MTR_8g015770 | 56.604 | 477 | 141 | 7 | 3 | 419 | 81 | 551 | 1.58e-161 | 466 |
| MS.gene74142.t1 | MTR_8g015830 | 68.306 | 366 | 102 | 3 | 2 | 356 | 72 | 434 | 3.52e-160 | 461 |
| MS.gene74142.t1 | MTR_7g016460 | 52.321 | 474 | 150 | 9 | 3 | 419 | 15 | 469 | 5.91e-141 | 410 |
| MS.gene74142.t1 | MTR_8g015680 | 62.398 | 367 | 121 | 3 | 2 | 359 | 71 | 429 | 4.94e-134 | 395 |
| MS.gene74142.t1 | MTR_6g006730 | 50.993 | 453 | 178 | 7 | 4 | 419 | 74 | 519 | 1.30e-131 | 389 |
| MS.gene74142.t1 | MTR_8g018340 | 59.504 | 363 | 119 | 5 | 3 | 356 | 81 | 424 | 3.12e-126 | 377 |
| MS.gene74142.t1 | MTR_8g015670 | 53.066 | 424 | 109 | 9 | 33 | 419 | 4 | 374 | 2.30e-122 | 360 |
| MS.gene74142.t1 | MTR_7g025080 | 65.672 | 268 | 33 | 3 | 210 | 419 | 83 | 349 | 3.24e-103 | 310 |
| MS.gene74142.t1 | MTR_6g006740 | 51.321 | 265 | 117 | 4 | 4 | 265 | 83 | 338 | 1.81e-68 | 221 |
| MS.gene74142.t1 | MTR_8g015720 | 48.235 | 255 | 109 | 10 | 177 | 419 | 20 | 263 | 1.52e-51 | 174 |
| MS.gene74142.t1 | MTR_8g008643 | 54.321 | 81 | 31 | 2 | 327 | 406 | 12 | 87 | 1.22e-21 | 91.7 |
| MS.gene74142.t1 | MTR_6g006760 | 79.592 | 49 | 9 | 1 | 355 | 402 | 184 | 232 | 1.22e-18 | 85.1 |
| MS.gene74142.t1 | MTR_6g006750 | 54.930 | 71 | 26 | 2 | 355 | 419 | 43 | 113 | 1.99e-18 | 80.9 |
| MS.gene74142.t1 | MTR_2g100590 | 27.103 | 321 | 205 | 10 | 5 | 322 | 108 | 402 | 6.22e-16 | 79.7 |
| MS.gene74142.t1 | MTR_2g100590 | 27.103 | 321 | 205 | 10 | 5 | 322 | 108 | 402 | 7.71e-16 | 79.3 |
| MS.gene74142.t1 | MTR_2g100590 | 26.994 | 326 | 209 | 10 | 5 | 327 | 108 | 407 | 1.34e-15 | 79.3 |
| MS.gene74142.t1 | MTR_6g005890 | 51.852 | 54 | 21 | 1 | 371 | 419 | 10 | 63 | 8.81e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATCTACATTGATTATT+TGG | 0.126828 | 7.4:+75388758 | MS.gene74142:CDS |
| GTCATTGTGGATTGTTCTTT+TGG | 0.250388 | 7.4:+75388173 | MS.gene74142:CDS |
| CTTAAGGTGTTGGAGTTATC+TGG | 0.271166 | 7.4:+75388606 | MS.gene74142:CDS |
| TACATTGATTATTTGGATCT+TGG | 0.279262 | 7.4:+75388765 | MS.gene74142:CDS |
| ATATTATTGTCATGATGTTT+TGG | 0.286935 | 7.4:+75388398 | MS.gene74142:CDS |
| TGTCAAAGCATGTTTATCTT+TGG | 0.291855 | 7.4:+75387938 | MS.gene74142:CDS |
| TGTTGACCTCTTTCATGTTA+TGG | 0.292423 | 7.4:-75388632 | None:intergenic |
| AGGGTTACACTTGTTCTATT+TGG | 0.306621 | 7.4:+75388464 | MS.gene74142:CDS |
| CTTCTTACAAAAGAAATAAT+AGG | 0.308664 | 7.4:-75388711 | None:intergenic |
| ATATCATGAGCTGAAGAAAT+TGG | 0.315048 | 7.4:-75390239 | None:intergenic |
| CTATCAAAATGAATCTTATA+TGG | 0.325709 | 7.4:-75388426 | None:intergenic |
| TATTCACATGACAATAGATT+TGG | 0.337789 | 7.4:-75388663 | None:intergenic |
| TATTTCAAGTGTTCAACTTA+AGG | 0.351854 | 7.4:+75388590 | MS.gene74142:CDS |
| CTCAAGACAGTTGATGTTGA+TGG | 0.379137 | 7.4:+75388333 | MS.gene74142:CDS |
| TCAGAGTTGATCAAGCATTC+AGG | 0.390699 | 7.4:+75388115 | MS.gene74142:CDS |
| ACATCAACTGTCTTGAGCTT+TGG | 0.405224 | 7.4:-75388327 | None:intergenic |
| TTTGGATCTTGGTAACTTGA+AGG | 0.426673 | 7.4:+75388776 | MS.gene74142:CDS |
| ACTTACCAAGTTGGTGTTGA+AGG | 0.452538 | 7.4:+75388086 | MS.gene74142:CDS |
| GATAGTTGCAGAAATTTGAA+AGG | 0.472029 | 7.4:+75388444 | MS.gene74142:CDS |
| AAGTGTTCAACTTAAGGTGT+TGG | 0.488013 | 7.4:+75388596 | MS.gene74142:CDS |
| ATGACCTTCCTCAATGTAGT+TGG | 0.492271 | 7.4:-75388019 | None:intergenic |
| TGTTTATCTTTGGTTGAAGT+CGG | 0.494118 | 7.4:+75387948 | MS.gene74142:CDS |
| CCAAGTTGGTGTTGAAGGGG+GGG | 0.498131 | 7.4:+75388091 | MS.gene74142:CDS |
| ATTTCAATCTCTCAAGGAAA+GGG | 0.498601 | 7.4:-75388536 | None:intergenic |
| TGACAAATTTCAATCTCTCA+AGG | 0.499167 | 7.4:-75388542 | None:intergenic |
| GTGTTGGTGGCATGGCTTGA+AGG | 0.502128 | 7.4:+75390148 | MS.gene74142:CDS |
| CTTACCAAGTTGGTGTTGAA+GGG | 0.507173 | 7.4:+75388087 | MS.gene74142:CDS |
| ATAGTTGCAGAAATTTGAAA+GGG | 0.510548 | 7.4:+75388445 | MS.gene74142:CDS |
| AAAGTTATATGTTCAATGAA+AGG | 0.513901 | 7.4:-75388234 | None:intergenic |
| TTACACTTGTTCTATTTGGA+AGG | 0.517715 | 7.4:+75388468 | MS.gene74142:CDS |
| AGCAAAATCACTTACCAAGT+TGG | 0.527042 | 7.4:+75388077 | MS.gene74142:CDS |
| TAATATAGATACTCAAGACT+TGG | 0.530379 | 7.4:-75388381 | None:intergenic |
| CATTGAGAGTATTGTCATTG+TGG | 0.534272 | 7.4:+75388160 | MS.gene74142:CDS |
| GTAATACTATCACAGACAAA+TGG | 0.539863 | 7.4:+75388490 | MS.gene74142:CDS |
| ACCAAGTTGGTGTTGAAGGG+GGG | 0.542246 | 7.4:+75388090 | MS.gene74142:CDS |
| CAAGCCATGCCACCAACACT+TGG | 0.553732 | 7.4:-75390144 | None:intergenic |
| CTAGAGCTTTGTTTGCCATG+TGG | 0.563699 | 7.4:+75387994 | MS.gene74142:CDS |
| AATTTCAATCTCTCAAGGAA+AGG | 0.567927 | 7.4:-75388537 | None:intergenic |
| GATACCAAGTGTTGGTGGCA+TGG | 0.576429 | 7.4:+75390140 | MS.gene74142:CDS |
| CTACTGATACCAAGTGTTGG+TGG | 0.579731 | 7.4:+75390135 | MS.gene74142:CDS |
| TTACCAAGTTGGTGTTGAAG+GGG | 0.582704 | 7.4:+75388088 | MS.gene74142:CDS |
| AATATAGATACTCAAGACTT+GGG | 0.587007 | 7.4:-75388380 | None:intergenic |
| TGATGTTGATGGAATACAAG+AGG | 0.588977 | 7.4:+75388344 | MS.gene74142:CDS |
| AATTGGCAACGATTCTAACA+AGG | 0.591440 | 7.4:-75390222 | None:intergenic |
| CTTTGGTTGAAGTCGGCAAG+TGG | 0.594306 | 7.4:+75387955 | MS.gene74142:CDS |
| TACCAAGTTGGTGTTGAAGG+GGG | 0.596188 | 7.4:+75388089 | MS.gene74142:CDS |
| TGGTTGCCATAACATGAAAG+AGG | 0.598070 | 7.4:+75388626 | MS.gene74142:CDS |
| AACTACATTGAGGAAGGTCA+TGG | 0.618471 | 7.4:+75388021 | MS.gene74142:CDS |
| ATGAAGTGTTTGAGCATGCA+TGG | 0.620142 | 7.4:+75388300 | MS.gene74142:CDS |
| TTTGCTTCGATTACACCTGT+CGG | 0.620828 | 7.4:-75388060 | None:intergenic |
| GCTCTACTGATACCAAGTGT+TGG | 0.637899 | 7.4:+75390132 | MS.gene74142:CDS |
| ATGTGACGAGAACATTGTCG+AGG | 0.640187 | 7.4:+75387848 | MS.gene74142:CDS |
| ATGTGGTTCCAACTACATTG+AGG | 0.647846 | 7.4:+75388011 | MS.gene74142:CDS |
| GGTTCCAACTACATTGAGGA+AGG | 0.659502 | 7.4:+75388015 | MS.gene74142:CDS |
| ATTCATCTTTGAGCTAACTG+AGG | 0.668486 | 7.4:+75388848 | MS.gene74142:CDS |
| TCAATGTAGTTGGAACCACA+TGG | 0.687885 | 7.4:-75388009 | None:intergenic |
| GTAGGATGAATTCAACCCTG+CGG | 0.769483 | 7.4:+75388952 | MS.gene74142:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATATTTAATATAAT+AGG | + | chr7.4:75389254-75389273 | MS.gene74142:intron | 0.0% |
| !! | TAATTGATTAATAACTATAT+TGG | - | chr7.4:75389230-75389249 | None:intergenic | 10.0% |
| !!! | TAATAATTAATTGGTTTAAT+GGG | + | chr7.4:75389358-75389377 | MS.gene74142:intron | 10.0% |
| !!! | TTAATAATTAATTGGTTTAA+TGG | + | chr7.4:75389357-75389376 | MS.gene74142:intron | 10.0% |
| !! | ACTTACTAAAAAAAATACAT+TGG | + | chr7.4:75389160-75389179 | MS.gene74142:intron | 15.0% |
| !! | ATAAAATTCTTTCATAACAT+AGG | + | chr7.4:75389866-75389885 | MS.gene74142:intron | 15.0% |
| !! | CTTACTAAAAAAAATACATT+GGG | + | chr7.4:75389161-75389180 | MS.gene74142:intron | 15.0% |
| !! | TAAAATTCTTTCATAACATA+GGG | + | chr7.4:75389867-75389886 | MS.gene74142:intron | 15.0% |
| !! | TAAGCAATATACTATAAATT+TGG | - | chr7.4:75389078-75389097 | None:intergenic | 15.0% |
| !!! | AAAAAAAAACGCATTTTTTT+GGG | + | chr7.4:75389314-75389333 | MS.gene74142:intron | 15.0% |
| !! | AAAGTTATATGTTCAATGAA+AGG | - | chr7.4:75388237-75388256 | None:intergenic | 20.0% |
| !! | CAATATACTATAAATTTGGT+AGG | - | chr7.4:75389074-75389093 | None:intergenic | 20.0% |
| !! | CTATCAAAATGAATCTTATA+TGG | - | chr7.4:75388429-75388448 | None:intergenic | 20.0% |
| !! | CTTCTTACAAAAGAAATAAT+AGG | - | chr7.4:75388714-75388733 | None:intergenic | 20.0% |
| !!! | ATATTATTGTCATGATGTTT+TGG | + | chr7.4:75388398-75388417 | MS.gene74142:CDS | 20.0% |
| !!! | ATTTTGACAAAAGGAAATAA+CGG | - | chr7.4:75389907-75389926 | None:intergenic | 20.0% |
| !!! | CAAAAAAAAACGCATTTTTT+TGG | + | chr7.4:75389313-75389332 | MS.gene74142:intron | 20.0% |
| !!! | GTTGTTGTTTTTATACTTTT+TGG | + | chr7.4:75389999-75390018 | MS.gene74142:intron | 20.0% |
| !!! | TCAAATCTACATTGATTATT+TGG | + | chr7.4:75388758-75388777 | MS.gene74142:CDS | 20.0% |
| !!! | TTTATAAAGTTTTTCGTAAC+CGG | + | chr7.4:75389443-75389462 | MS.gene74142:intron | 20.0% |
| ! | AATATAGATACTCAAGACTT+GGG | - | chr7.4:75388383-75388402 | None:intergenic | 25.0% |
| ! | ATAGTTGCAGAAATTTGAAA+GGG | + | chr7.4:75388445-75388464 | MS.gene74142:CDS | 25.0% |
| ! | ATTATTGCTTTGTAGTGTAT+TGG | + | chr7.4:75389196-75389215 | MS.gene74142:intron | 25.0% |
| ! | CTAAAAAAAATACATTGGGA+AGG | + | chr7.4:75389165-75389184 | MS.gene74142:intron | 25.0% |
| ! | TAATATAGATACTCAAGACT+TGG | - | chr7.4:75388384-75388403 | None:intergenic | 25.0% |
| ! | TATTCACATGACAATAGATT+TGG | - | chr7.4:75388666-75388685 | None:intergenic | 25.0% |
| ! | TTATTGACAACTTGAAATCA+AGG | - | chr7.4:75389850-75389869 | None:intergenic | 25.0% |
| ! | TTATTGCTTTGTAGTGTATT+GGG | + | chr7.4:75389197-75389216 | MS.gene74142:intron | 25.0% |
| ! | TTCATAACATAGGGAAAAAA+AGG | + | chr7.4:75389876-75389895 | MS.gene74142:intron | 25.0% |
| !! | TACATTGATTATTTGGATCT+TGG | + | chr7.4:75388765-75388784 | MS.gene74142:CDS | 25.0% |
| !! | TATTTCAAGTGTTCAACTTA+AGG | + | chr7.4:75388590-75388609 | MS.gene74142:CDS | 25.0% |
| !! | TTATAAAGTTTTTCGTAACC+GGG | + | chr7.4:75389444-75389463 | MS.gene74142:intron | 25.0% |
| !!! | CAAAAAAAACGCGTTTTTTT+GGG | + | chr7.4:75389409-75389428 | MS.gene74142:intron | 25.0% |
| AATTTCAATCTCTCAAGGAA+AGG | - | chr7.4:75388540-75388559 | None:intergenic | 30.0% | |
| ACTTGAAATCAAGGAAACAT+AGG | - | chr7.4:75389841-75389860 | None:intergenic | 30.0% | |
| ATATCATGAGCTGAAGAAAT+TGG | - | chr7.4:75390242-75390261 | None:intergenic | 30.0% | |
| ATTTCAATCTCTCAAGGAAA+GGG | - | chr7.4:75388539-75388558 | None:intergenic | 30.0% | |
| CAGAATTTGAAGAAGACAAT+CGG | + | chr7.4:75389489-75389508 | MS.gene74142:intron | 30.0% | |
| GATAGTTGCAGAAATTTGAA+AGG | + | chr7.4:75388444-75388463 | MS.gene74142:CDS | 30.0% | |
| GATTGTCTTCTTCAAATTCT+GGG | - | chr7.4:75389490-75389509 | None:intergenic | 30.0% | |
| GGTCAACATAAAATGTTATG+TGG | + | chr7.4:75390020-75390039 | MS.gene74142:intron | 30.0% | |
| GTAATACTATCACAGACAAA+TGG | + | chr7.4:75388490-75388509 | MS.gene74142:CDS | 30.0% | |
| TGACAAATTTCAATCTCTCA+AGG | - | chr7.4:75388545-75388564 | None:intergenic | 30.0% | |
| TGTCAAAGCATGTTTATCTT+TGG | + | chr7.4:75387938-75387957 | MS.gene74142:CDS | 30.0% | |
| TGTTTATCTTTGGTTGAAGT+CGG | + | chr7.4:75387948-75387967 | MS.gene74142:CDS | 30.0% | |
| TTACACTTGTTCTATTTGGA+AGG | + | chr7.4:75388468-75388487 | MS.gene74142:CDS | 30.0% | |
| ! | AGTGATGTCAAAACATTTTC+AGG | - | chr7.4:75388822-75388841 | None:intergenic | 30.0% |
| !! | CATGCAATGATTTTGACAAA+AGG | - | chr7.4:75389916-75389935 | None:intergenic | 30.0% |
| !! | TATTTTTATCCCCACTTAGT+GGG | + | chr7.4:75389960-75389979 | MS.gene74142:intron | 30.0% |
| !!! | AAAAACGCATTTTTTTGGGA+AGG | + | chr7.4:75389318-75389337 | MS.gene74142:intron | 30.0% |
| !!! | CATTTTCAGGTTTGATGTTT+TGG | - | chr7.4:75388809-75388828 | None:intergenic | 30.0% |
| !!! | GCAAAAAAAACGCGTTTTTT+TGG | + | chr7.4:75389408-75389427 | MS.gene74142:intron | 30.0% |
| !!! | TTTTTTGCTGTCACATGAAA+CGG | - | chr7.4:75389396-75389415 | None:intergenic | 30.0% |
| AAGTGTTCAACTTAAGGTGT+TGG | + | chr7.4:75388596-75388615 | MS.gene74142:CDS | 35.0% | |
| AATTGGCAACGATTCTAACA+AGG | - | chr7.4:75390225-75390244 | None:intergenic | 35.0% | |
| AGCAAAATCACTTACCAAGT+TGG | + | chr7.4:75388077-75388096 | MS.gene74142:CDS | 35.0% | |
| AGGGTTACACTTGTTCTATT+TGG | + | chr7.4:75388464-75388483 | MS.gene74142:CDS | 35.0% | |
| ATCGAGATCCTAAACAAGAT+CGG | + | chr7.4:75388997-75389016 | MS.gene74142:intron | 35.0% | |
| ATCTGTTTCATTCATGTGAC+AGG | + | chr7.4:75389286-75389305 | MS.gene74142:intron | 35.0% | |
| ATTCATCTTTGAGCTAACTG+AGG | + | chr7.4:75388848-75388867 | MS.gene74142:CDS | 35.0% | |
| CGATTGTCTTCTTCAAATTC+TGG | - | chr7.4:75389491-75389510 | None:intergenic | 35.0% | |
| TCGTAGAAAAACTGTAGGTT+TGG | - | chr7.4:75390077-75390096 | None:intergenic | 35.0% | |
| TGTTGACCTCTTTCATGTTA+TGG | - | chr7.4:75388635-75388654 | None:intergenic | 35.0% | |
| TTGAAGAAGACAATCGGAAA+CGG | + | chr7.4:75389495-75389514 | MS.gene74142:intron | 35.0% | |
| ! | AAATGCTATGTTTTACCGAC+AGG | + | chr7.4:75388045-75388064 | MS.gene74142:CDS | 35.0% |
| ! | GAGTATCGTAGAAAAACTGT+AGG | - | chr7.4:75390082-75390101 | None:intergenic | 35.0% |
| ! | TGATGTTGATGGAATACAAG+AGG | + | chr7.4:75388344-75388363 | MS.gene74142:CDS | 35.0% |
| ! | TTTGGATCTTGGTAACTTGA+AGG | + | chr7.4:75388776-75388795 | MS.gene74142:CDS | 35.0% |
| !! | CATTGAGAGTATTGTCATTG+TGG | + | chr7.4:75388160-75388179 | MS.gene74142:CDS | 35.0% |
| !! | GTATTTTTATCCCCACTTAG+TGG | + | chr7.4:75389959-75389978 | MS.gene74142:intron | 35.0% |
| !! | GTCATTGTGGATTGTTCTTT+TGG | + | chr7.4:75388173-75388192 | MS.gene74142:CDS | 35.0% |
| AACTACATTGAGGAAGGTCA+TGG | + | chr7.4:75388021-75388040 | MS.gene74142:CDS | 40.0% | |
| ACATCAACTGTCTTGAGCTT+TGG | - | chr7.4:75388330-75388349 | None:intergenic | 40.0% | |
| AGGGTGACAATATCGTGAAT+CGG | + | chr7.4:75389023-75389042 | MS.gene74142:intron | 40.0% | |
| ATGACCTTCCTCAATGTAGT+TGG | - | chr7.4:75388022-75388041 | None:intergenic | 40.0% | |
| ATGTGGTTCCAACTACATTG+AGG | + | chr7.4:75388011-75388030 | MS.gene74142:CDS | 40.0% | |
| GAATTCTCTGCTGCAAAACA+AGG | - | chr7.4:75389798-75389817 | None:intergenic | 40.0% | |
| GGGGATGAAACTTGAAATCA+TGG | - | chr7.4:75389672-75389691 | None:intergenic | 40.0% | |
| GTACTTACGCTGTATTGTGT+AGG | + | chr7.4:75388934-75388953 | MS.gene74142:intron | 40.0% | |
| GTATGGAATCGGAAATTGGT+GGG | - | chr7.4:75389575-75389594 | None:intergenic | 40.0% | |
| TCAATGTAGTTGGAACCACA+TGG | - | chr7.4:75388012-75388031 | None:intergenic | 40.0% | |
| TCGAGATCCTAAACAAGATC+GGG | + | chr7.4:75388998-75389017 | MS.gene74142:intron | 40.0% | |
| TGCTTGATTGGGTATGGAAT+CGG | - | chr7.4:75389586-75389605 | None:intergenic | 40.0% | |
| TGCTTTGTAGTGTATTGGGA+AGG | + | chr7.4:75389201-75389220 | MS.gene74142:intron | 40.0% | |
| TGGTTGCCATAACATGAAAG+AGG | + | chr7.4:75388626-75388645 | MS.gene74142:CDS | 40.0% | |
| TTCTTCAAATTCTGGGTTCG+CGG | - | chr7.4:75389483-75389502 | None:intergenic | 40.0% | |
| TTGGGTATGGAATCGGAAAT+TGG | - | chr7.4:75389579-75389598 | None:intergenic | 40.0% | |
| TTTGCTTCGATTACACCTGT+CGG | - | chr7.4:75388063-75388082 | None:intergenic | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr7.4:75389972-75389991 | None:intergenic | 40.0% |
| ! | ATGAAGTGTTTGAGCATGCA+TGG | + | chr7.4:75388300-75388319 | MS.gene74142:CDS | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | chr7.4:75389973-75389992 | None:intergenic | 40.0% |
| ! | CTCAAGACAGTTGATGTTGA+TGG | + | chr7.4:75388333-75388352 | MS.gene74142:CDS | 40.0% |
| ! | TCAGAGTTGATCAAGCATTC+AGG | + | chr7.4:75388115-75388134 | MS.gene74142:CDS | 40.0% |
| !! | ACTTACCAAGTTGGTGTTGA+AGG | + | chr7.4:75388086-75388105 | MS.gene74142:CDS | 40.0% |
| !! | CTTAAGGTGTTGGAGTTATC+TGG | + | chr7.4:75388606-75388625 | MS.gene74142:CDS | 40.0% |
| !! | CTTACCAAGTTGGTGTTGAA+GGG | + | chr7.4:75388087-75388106 | MS.gene74142:CDS | 40.0% |
| !! | GAGGTTTTGTGATCAAGGAT+TGG | + | chr7.4:75387867-75387886 | MS.gene74142:CDS | 40.0% |
| !! | TTACCAAGTTGGTGTTGAAG+GGG | + | chr7.4:75388088-75388107 | MS.gene74142:CDS | 40.0% |
| !! | TTGTCGAGGTTTTGTGATCA+AGG | + | chr7.4:75387862-75387881 | MS.gene74142:CDS | 40.0% |
| AACGACTGTCTCGAGTGTTT+CGG | - | chr7.4:75389521-75389540 | None:intergenic | 45.0% | |
| ACCTTGCTTGAAATACCGCA+GGG | - | chr7.4:75388970-75388989 | None:intergenic | 45.0% | |
| AGATGCAAGTGTTTGACGCT+TGG | - | chr7.4:75389699-75389718 | None:intergenic | 45.0% | |
| ATGTGACGAGAACATTGTCG+AGG | + | chr7.4:75387848-75387867 | MS.gene74142:CDS | 45.0% | |
| CCACTTAGTGGGATAAGACT+TGG | + | chr7.4:75389971-75389990 | MS.gene74142:intron | 45.0% | |
| CGAGATCCTAAACAAGATCG+GGG | + | chr7.4:75388999-75389018 | MS.gene74142:intron | 45.0% | |
| GCTCTACTGATACCAAGTGT+TGG | + | chr7.4:75390132-75390151 | MS.gene74142:CDS | 45.0% | |
| GGTATGGAATCGGAAATTGG+TGG | - | chr7.4:75389576-75389595 | None:intergenic | 45.0% | |
| GGTTCCAACTACATTGAGGA+AGG | + | chr7.4:75388015-75388034 | MS.gene74142:CDS | 45.0% | |
| GTAGGATGAATTCAACCCTG+CGG | + | chr7.4:75388952-75388971 | MS.gene74142:intron | 45.0% | |
| GTGACAATATCGTGAATCGG+AGG | + | chr7.4:75389026-75389045 | MS.gene74142:intron | 45.0% | |
| TACCTTGCTTGAAATACCGC+AGG | - | chr7.4:75388971-75388990 | None:intergenic | 45.0% | |
| TCTTCAAATTCTGGGTTCGC+GGG | - | chr7.4:75389482-75389501 | None:intergenic | 45.0% | |
| TGAATCGGAGGATCGTAACA+CGG | + | chr7.4:75389038-75389057 | MS.gene74142:intron | 45.0% | |
| TTGCAGCAGAGAATTCATCG+AGG | + | chr7.4:75389802-75389821 | MS.gene74142:intron | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | chr7.4:75389974-75389993 | None:intergenic | 45.0% |
| !! | CTACTGATACCAAGTGTTGG+TGG | + | chr7.4:75390135-75390154 | MS.gene74142:CDS | 45.0% |
| !! | CTAGAGCTTTGTTTGCCATG+TGG | + | chr7.4:75387994-75388013 | MS.gene74142:CDS | 45.0% |
| !! | TACCAAGTTGGTGTTGAAGG+GGG | + | chr7.4:75388089-75388108 | MS.gene74142:CDS | 45.0% |
| !!! | CGTTGTTCAGTTTTGAGCCA+GGG | + | chr7.4:75388261-75388280 | MS.gene74142:CDS | 45.0% |
| !! | ACAATTAATTAATAATTAAT+TGG | + | chr7.4:75389349-75389368 | MS.gene74142:intron | 5.0% |
| ACCCTGCGGTATTTCAAGCA+AGG | + | chr7.4:75388966-75388985 | MS.gene74142:intron | 50.0% | |
| ATCCTAAACAAGATCGGGGC+AGG | + | chr7.4:75389003-75389022 | MS.gene74142:intron | 50.0% | |
| CTTTGGTTGAAGTCGGCAAG+TGG | + | chr7.4:75387955-75387974 | MS.gene74142:CDS | 50.0% | |
| TACCACCTGCGTGCTTGATT+GGG | - | chr7.4:75389597-75389616 | None:intergenic | 50.0% | |
| TCCTAAACAAGATCGGGGCA+GGG | + | chr7.4:75389004-75389023 | MS.gene74142:intron | 50.0% | |
| TGCAAGTGTTTGACGCTTGG+TGG | - | chr7.4:75389696-75389715 | None:intergenic | 50.0% | |
| ! | AAGTGTTTGACGCTTGGTGG+AGG | - | chr7.4:75389693-75389712 | None:intergenic | 50.0% |
| ! | AGTGTTTGACGCTTGGTGGA+GGG | - | chr7.4:75389692-75389711 | None:intergenic | 50.0% |
| !! | ACCAAGTTGGTGTTGAAGGG+GGG | + | chr7.4:75388090-75388109 | MS.gene74142:CDS | 50.0% |
| !! | GATACCAAGTGTTGGTGGCA+TGG | + | chr7.4:75390140-75390159 | MS.gene74142:CDS | 50.0% |
| !!! | GCGTTGTTCAGTTTTGAGCC+AGG | + | chr7.4:75388260-75388279 | MS.gene74142:CDS | 50.0% |
| !!! | TGTTCAGTTTTGAGCCAGGG+AGG | + | chr7.4:75388264-75388283 | MS.gene74142:CDS | 50.0% |
| CAAATTCTGGGTTCGCGGGT+CGG | - | chr7.4:75389478-75389497 | None:intergenic | 55.0% | |
| CAAGCCATGCCACCAACACT+TGG | - | chr7.4:75390147-75390166 | None:intergenic | 55.0% | |
| CCATACCCAATCAAGCACGC+AGG | + | chr7.4:75389589-75389608 | MS.gene74142:intron | 55.0% | |
| CCTGCGTGCTTGATTGGGTA+TGG | - | chr7.4:75389592-75389611 | None:intergenic | 55.0% | |
| CGGAGGATCGTAACACGGAT+CGG | + | chr7.4:75389043-75389062 | MS.gene74142:intron | 55.0% | |
| GTACCACCTGCGTGCTTGAT+TGG | - | chr7.4:75389598-75389617 | None:intergenic | 55.0% | |
| TACCCAATCAAGCACGCAGG+TGG | + | chr7.4:75389592-75389611 | MS.gene74142:intron | 55.0% | |
| ! | ACCCTGCCCCGATCTTGTTT+AGG | - | chr7.4:75389008-75389027 | None:intergenic | 55.0% |
| ! | GAATCGGAAATTGGTGGGCG+CGG | - | chr7.4:75389570-75389589 | None:intergenic | 55.0% |
| ! | GTCGTTTCCACGCGTTTTCG+CGG | + | chr7.4:75389535-75389554 | MS.gene74142:intron | 55.0% |
| ! | GTGTTTGACGCTTGGTGGAG+GGG | - | chr7.4:75389691-75389710 | None:intergenic | 55.0% |
| !! | CCAAGTTGGTGTTGAAGGGG+GGG | + | chr7.4:75388091-75388110 | MS.gene74142:CDS | 55.0% |
| !! | GTGTTGGTGGCATGGCTTGA+AGG | + | chr7.4:75390148-75390167 | MS.gene74142:CDS | 55.0% |
| !!! | TCAGTTTTGAGCCAGGGAGG+CGG | + | chr7.4:75388267-75388286 | MS.gene74142:CDS | 55.0% |
| CCCCCCCTTCAACACCAACT+TGG | - | chr7.4:75388094-75388113 | None:intergenic | 60.0% | |
| ! | TGAGTTTTACGCCGCCTCCC+TGG | - | chr7.4:75388281-75388300 | None:intergenic | 60.0% |
| AGGATCGCCGCGAAAACGCG+TGG | - | chr7.4:75389545-75389564 | None:intergenic | 65.0% | |
| ! | ACGCGTTTTCGCGGCGATCC+TGG | + | chr7.4:75389544-75389563 | MS.gene74142:intron | 65.0% |
| ! | GGAAATTGGTGGGCGCGGCC+AGG | - | chr7.4:75389565-75389584 | None:intergenic | 70.0% |
| CGCGGGTCGGATTCGCGACC+CGG | - | chr7.4:75389465-75389484 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 75387826 | 75390283 | 75387826 | ID=MS.gene74142 |
| chr7.4 | mRNA | 75387826 | 75390283 | 75387826 | ID=MS.gene74142.t1;Parent=MS.gene74142 |
| chr7.4 | exon | 75387826 | 75388869 | 75387826 | ID=MS.gene74142.t1.exon1;Parent=MS.gene74142.t1 |
| chr7.4 | CDS | 75387826 | 75388869 | 75387826 | ID=cds.MS.gene74142.t1;Parent=MS.gene74142.t1 |
| chr7.4 | exon | 75388956 | 75388973 | 75388956 | ID=MS.gene74142.t1.exon2;Parent=MS.gene74142.t1 |
| chr7.4 | CDS | 75388956 | 75388973 | 75388956 | ID=cds.MS.gene74142.t1;Parent=MS.gene74142.t1 |
| chr7.4 | exon | 75390086 | 75390283 | 75390086 | ID=MS.gene74142.t1.exon3;Parent=MS.gene74142.t1 |
| chr7.4 | CDS | 75390086 | 75390283 | 75390086 | ID=cds.MS.gene74142.t1;Parent=MS.gene74142.t1 |
| Gene Sequence |
| Protein sequence |
