AlfalfaGEDB | MS.gene74623

M. sativa cultivar XinJiangDaYe / MS.gene74623

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74623.t1	KEH25024.1	79.1	177	23	1	72	248	50	212	1.30E-74	289.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74623.t1	A0A072U5J3	79.1	177	23	1	72	248	50	212	9.6e-75	289.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050750	MS.gene74623	0.807255	5.53E-50	-1.69E-46
MS.gene050953	MS.gene74623	0.812711	3.69E-51	-1.69E-46
MS.gene054405	MS.gene74623	0.801865	7.36E-49	-1.69E-46
MS.gene054657	MS.gene74623	0.800752	1.24E-48	-1.69E-46
MS.gene056498	MS.gene74623	0.801343	9.42E-49	-1.69E-46
MS.gene058548	MS.gene74623	0.800669	1.29E-48	-1.69E-46
MS.gene060634	MS.gene74623	-0.808517	2.98E-50	-1.69E-46

Showing 1 to 7 of 7 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74623.t1	MTR_6g013220	79.070	172	22	1	77	248	55	212	2.65e-96	281
MS.gene74623.t1	MTR_6g048070	44.554	101	38	2	1	85	1	99	4.42e-18	77.8
MS.gene74623.t1	MTR_6g016175	26.295	251	158	8	1	243	1	232	1.61e-15	75.9
MS.gene74623.t1	MTR_3g448380	30.625	160	107	3	59	214	117	276	2.31e-14	71.2
MS.gene74623.t1	MTR_1g040450	30.409	171	113	4	76	243	111	278	7.24e-14	70.5
MS.gene74623.t1	MTR_7g108760	25.926	189	133	4	59	243	357	542	1.87e-13	69.7
MS.gene74623.t1	MTR_6g048840	28.000	175	112	5	76	243	225	392	1.99e-13	69.7
MS.gene74623.t1	MTR_8g058470	25.926	189	133	4	59	243	355	540	1.99e-13	69.7
MS.gene74623.t1	MTR_2g105880	23.950	238	166	5	10	243	67	293	1.48e-12	66.6
MS.gene74623.t1	MTR_3g022950	25.258	194	135	4	3	193	636	822	5.27e-12	65.9

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 45 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTAAAAGATGGTGGA+AGG	0.594675	6.3:+22306304	MS.gene74623:CDS
AAAATCTGCGATGATCCATA+AGG	0.558872	6.3:+22306214	MS.gene74623:CDS
AAATCGCCAAACATCATTAA+AGG	0.271490	6.3:-22306593	None:intergenic
AACAAATAAGAGATACATCT+TGG	0.380955	6.3:+22306445	MS.gene74623:CDS
AACCAGATTGAACTAATAGA+GGG	0.638427	6.3:-22306865	None:intergenic
AACTCGGTGCATGAACCAAT+AGG	0.486014	6.3:-22306508	None:intergenic
AAGAGATACATCTTGGTTGA+AGG	0.497593	6.3:+22306452	MS.gene74623:CDS
AATCTCTCTTGACTGCAACT+CGG	0.607370	6.3:-22306524	None:intergenic
AGGAGGAGAACAATGTAAGC+TGG	0.493023	6.3:+22306324	MS.gene74623:CDS
AGGTGTAATCCAATTGTGTT+CGG	0.490342	6.3:+22306245	MS.gene74623:CDS

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGCCAAACATCATTAA+AGG	-	chr6.3:22306596-22306615	None:intergenic	30.0%
AACCAGATTGAACTAATAGA+GGG	-	chr6.3:22306868-22306887	None:intergenic	30.0%
CCGATGAAAAAGTTAAAAGA+TGG	+	chr6.3:22306297-22306316	MS.gene74623:CDS	30.0%
TCAACACCTTTAATGATGTT+TGG	+	chr6.3:22306587-22306606	MS.gene74623:CDS	30.0%
TCATTTCAGCTATACAATGT+CGG	-	chr6.3:22306685-22306704	None:intergenic	30.0%
AAAATCTGCGATGATCCATA+AGG	+	chr6.3:22306214-22306233	MS.gene74623:CDS	35.0%
AAGAGATACATCTTGGTTGA+AGG	+	chr6.3:22306452-22306471	MS.gene74623:CDS	35.0%
AGGTGTAATCCAATTGTGTT+CGG	+	chr6.3:22306245-22306264	MS.gene74623:CDS	35.0%
GAACCAGATTGAACTAATAG+AGG	-	chr6.3:22306869-22306888	None:intergenic	35.0%
TATAGCTGAAATGAACCTTG+TGG	+	chr6.3:22306691-22306710	MS.gene74623:CDS	35.0%

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	22306170	22306922	22306170	ID=MS.gene74623
chr6.3	mRNA	22306170	22306922	22306170	ID=MS.gene74623.t1;Parent=MS.gene74623
chr6.3	exon	22306170	22306922	22306170	ID=MS.gene74623.t1.exon1;Parent=MS.gene74623.t1
chr6.3	CDS	22306170	22306922	22306170	ID=cds.MS.gene74623.t1;Parent=MS.gene74623.t1

Gene Sequence

>MS.gene74623

ATGAGGATTTTAGGTTGGAATGTAGGAGGGATTACTGAGTTAGGAAAATCTGCGATGATCCATAAGGTTGCTCATAGGTGTAATCCAATTGTGTTCGGCTTGGTCAACACACAACATTCGAGTCTCACCGATGAAAAAGTTAAAAGATGGTGGAAGGAGGAGAACAATGTAAGCTGGGTAGATGTTCCAGAAACATGTTCCAATGACGAGAAAAGTGGGGGACAGGGATTGGTATTCTCTTGGAACGAACAACTTTTTTCGAAATCAAAAGTTTTAACAAATAAGAGATACATCTTGGTTGAAGGAAAATTGATTCAAGAAGGTCTTGACGTGTCTTTCCTATTGGTTCATGCACCGAGTTGCAGTCAAGAGAGATTTGATTTATGGAGAGATTTAATGAATCTCAAGAAGTCTATCTCAACACCTTTAATGATGTTTGGCGATTTTCAAGAAGTTTTGGAACCGGAAGAACTAAAGGGTAATGAGGTGACTTCACAAGGAATGAAAGACTTCCGACATTGTATAGCTGAAATGAACCTTGTGGAGCTTCCGTTGTTGGACAGAAAGTTCACATGGTATGACTATGACAATAACCGTGCAGGCAGAATAGATAGAGTTTTTGTAGATCAGGAATGGCTAGAGCATTTCAAGGTTTTGAAGCTGCGGGGATTAGAGAGAATAATCGCAGATCACCGCCCTCTATTAGTTCAATCTGGTTCAGTTGATGACATTACAAGCGTATGTGGAAATTAG

Protein sequence

>MS.gene74623.t1

MRILGWNVGGITELGKSAMIHKVAHRCNPIVFGLVNTQHSSLTDEKVKRWWKEENNVSWVDVPETCSNDEKSGGQGLVFSWNEQLFSKSKVLTNKRYILVEGKLIQEGLDVSFLLVHAPSCSQERFDLWRDLMNLKKSISTPLMMFGDFQEVLEPEELKGNEVTSQGMKDFRHCIAEMNLVELPLLDRKFTWYDYDNNRAGRIDRVFVDQEWLEHFKVLKLRGLERIIADHRPLLVQSGSVDDITSVCGN