AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058548


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058548.t1 MTR_1g115415 94.663 356 6 1 1 343 60 415 0.0 664
MS.gene058548.t1 MTR_8g105560 83.954 349 12 2 1 336 38 355 0.0 561
MS.gene058548.t1 MTR_5g068860 51.594 345 154 1 12 343 103 447 2.91e-122 362
MS.gene058548.t1 MTR_4g070060 23.028 317 225 4 45 343 235 550 5.71e-23 100
MS.gene058548.t1 MTR_4g084630 25.108 231 147 3 23 252 45 250 3.44e-17 81.6
MS.gene058548.t1 MTR_4g084630 23.194 263 171 7 86 343 47 283 1.85e-15 76.6
MS.gene058548.t1 MTR_5g094610 24.627 268 186 8 22 277 194 457 3.19e-16 79.7
MS.gene058548.t1 MTR_5g094610 24.545 220 123 3 81 260 192 408 4.25e-13 70.5
MS.gene058548.t1 MTR_2g034600 22.846 267 175 5 79 343 210 447 5.46e-15 76.3
MS.gene058548.t1 MTR_2g034600 22.348 264 179 5 8 267 189 430 3.01e-12 67.8
MS.gene058548.t1 MTR_2g034600 24.444 180 121 3 149 316 208 384 8.60e-12 66.2
MS.gene058548.t1 MTR_2g034600 24.227 194 135 4 48 237 283 468 1.10e-11 66.2
MS.gene058548.t1 MTR_2g034600 22.846 267 175 5 79 343 275 512 6.85e-15 75.9
MS.gene058548.t1 MTR_2g034600 22.348 264 179 5 8 267 254 495 2.97e-12 67.8
MS.gene058548.t1 MTR_2g034600 24.444 180 121 3 149 316 273 449 1.02e-11 66.2
MS.gene058548.t1 MTR_2g034600 24.590 183 126 4 48 226 348 522 1.33e-11 65.9
MS.gene058548.t1 MTR_2g034600 22.846 267 175 5 79 343 271 508 6.88e-15 75.9
MS.gene058548.t1 MTR_2g034600 22.348 264 179 5 8 267 250 491 2.95e-12 67.8
MS.gene058548.t1 MTR_2g034600 24.444 180 121 3 149 316 269 445 9.82e-12 66.2
MS.gene058548.t1 MTR_2g034600 24.590 183 126 4 48 226 344 518 1.33e-11 65.9
MS.gene058548.t1 MTR_6g003960 23.810 294 205 6 65 343 263 552 2.56e-13 71.2
MS.gene058548.t1 MTR_6g003960 21.569 255 154 4 24 233 283 536 9.18e-13 69.7
MS.gene058548.t1 MTR_6g003960 24.845 161 110 2 78 230 417 574 5.02e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058548.t1 AT2G44020 79.494 356 60 1 1 343 65 420 0.0 585
MS.gene058548.t1 AT4G02990 51.744 344 153 1 13 343 112 455 1.73e-126 373
MS.gene058548.t1 AT4G02990 51.744 344 153 1 13 343 112 455 1.73e-126 373
MS.gene058548.t1 AT2G21710 24.028 283 196 3 77 343 278 557 4.78e-25 106
MS.gene058548.t1 AT2G21710 26.070 257 176 5 7 252 272 525 4.67e-17 82.8
MS.gene058548.t1 AT2G21710 24.113 282 195 3 77 342 278 556 6.05e-25 105
MS.gene058548.t1 AT2G21710 26.070 257 176 5 7 252 272 525 2.95e-17 83.2
MS.gene058548.t1 AT2G21710 23.929 280 194 3 77 340 278 554 5.70e-24 103
MS.gene058548.t1 AT2G21710 26.070 257 176 5 7 252 272 525 3.61e-17 82.8
MS.gene058548.t1 AT1G78930 28.249 177 124 3 58 233 349 523 5.85e-18 85.5
MS.gene058548.t1 AT1G78930 23.390 295 206 6 65 343 249 539 4.60e-17 82.8
MS.gene058548.t1 AT4G14605 23.944 213 150 4 52 260 236 440 6.88e-17 82.0
MS.gene058548.t1 AT4G14605 23.116 199 141 4 43 237 263 453 6.52e-15 75.9
MS.gene058548.t1 AT4G14605 22.319 345 244 9 14 343 97 432 5.76e-11 63.9
MS.gene058548.t1 AT4G14605 23.944 213 150 4 52 260 236 440 6.88e-17 82.0
MS.gene058548.t1 AT4G14605 23.116 199 141 4 43 237 263 453 6.52e-15 75.9
MS.gene058548.t1 AT4G14605 22.319 345 244 9 14 343 97 432 5.76e-11 63.9
MS.gene058548.t1 AT5G55580 25.385 260 179 7 20 267 79 335 7.79e-17 81.3
MS.gene058548.t1 AT5G55580 24.257 202 137 3 158 343 119 320 5.61e-13 69.7
MS.gene058548.t1 AT5G55580 25.385 260 179 7 20 267 185 441 1.12e-16 81.3
MS.gene058548.t1 AT5G55580 24.257 202 137 3 158 343 225 426 2.45e-12 68.2
MS.gene058548.t1 AT4G38160 24.020 204 153 2 65 266 63 266 9.67e-16 77.4
MS.gene058548.t1 AT4G38160 23.396 265 170 7 86 343 47 285 1.10e-14 74.3
MS.gene058548.t1 AT4G38160 24.020 204 153 2 65 266 63 266 9.67e-16 77.4
MS.gene058548.t1 AT4G38160 23.396 265 170 7 86 343 47 285 1.10e-14 74.3
MS.gene058548.t1 AT4G38160 23.902 205 154 2 65 267 63 267 1.41e-15 77.4
MS.gene058548.t1 AT4G38160 23.396 265 170 7 86 343 47 285 1.26e-14 74.7
MS.gene058548.t1 AT4G38160 24.242 198 148 2 65 260 63 260 1.91e-15 77.0
MS.gene058548.t1 AT4G38160 23.396 265 170 7 86 343 47 285 1.82e-14 73.9
MS.gene058548.t1 AT5G55580 26.943 193 129 5 20 200 185 377 1.99e-12 68.2
MS.gene058548.t1 AT5G55580 25.000 172 127 2 84 253 223 394 2.13e-12 68.2

Find 74 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTATCCTTTGATTT+TGG 0.073063 4.4:-1977486 MS.gene058548:CDS
GTTGAGTTTATTCAGAAATT+AGG 0.154219 4.4:-1977527 MS.gene058548:CDS
GTTGATTACTTGGTTAATTT+AGG 0.165369 4.4:-1977107 MS.gene058548:CDS
AACTATAACGTGAAGTATTC+TGG 0.224236 4.4:+1976625 None:intergenic
GCTCAGTATCCGCAGATTAT+TGG 0.227610 4.4:-1976945 MS.gene058548:CDS
TCCTGATGAATTGCAGGATT+TGG 0.241747 4.4:-1977585 MS.gene058548:CDS
TTGATTACTTGGTTAATTTA+GGG 0.248506 4.4:-1977106 MS.gene058548:CDS
CTCAGTATCCGCAGATTATT+GGG 0.297010 4.4:-1976944 MS.gene058548:CDS
CTTCGATTATCTCAAGGGTT+TGG 0.298946 4.4:-1977615 MS.gene058548:CDS
GTTGATTGTTTGATTAGTTT+TGG 0.307251 4.4:-1976999 MS.gene058548:CDS
TTCGATTATCTCAAGGGTTT+GGG 0.314201 4.4:-1977614 MS.gene058548:CDS
TTGAGTTTATTCAGAAATTA+GGG 0.329984 4.4:-1977526 MS.gene058548:CDS
GATTATTGGGTTGCCTCTTA+AGG 0.337713 4.4:-1976931 MS.gene058548:CDS
CTTCAACCGTTGAAGTTATG+AGG 0.356463 4.4:-1977556 MS.gene058548:CDS
AATTATTCCTGATGAATTGC+AGG 0.358521 4.4:-1977591 MS.gene058548:CDS
CCTGTTATTAAGTTTCTTAG+AGG 0.361016 4.4:-1977329 MS.gene058548:CDS
CTAATCAAACAATCAACATT+AGG 0.365413 4.4:+1977005 None:intergenic
CCTCTAAGAAACTTAATAAC+AGG 0.368936 4.4:+1977329 None:intergenic
TTAGTATTGGTGTTAATCCT+AGG 0.373470 4.4:-1977202 MS.gene058548:CDS
GTCGCAGGATGTGGCTAGTA+TGG 0.403205 4.4:-1976755 MS.gene058548:CDS
GTAGCTTATCTTGTTAGTAT+TGG 0.406186 4.4:-1977215 MS.gene058548:CDS
CTCATAACTTCAACGGTTGA+AGG 0.413170 4.4:+1977557 None:intergenic
GAGAAAAGAGCTTATTTACT+TGG 0.423347 4.4:-1977053 MS.gene058548:CDS
ACCACCCTCGCAAACCCTTC+CGG 0.428125 4.4:+1976858 None:intergenic
GAAGACAATTTAGCCTTAAG+AGG 0.431995 4.4:+1976918 None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG 0.445823 4.4:-1976859 MS.gene058548:CDS
GGTGTTAATCCTAGGGATAT+TGG 0.451217 4.4:-1977194 MS.gene058548:CDS
TACTTCTTCAAAAGTGAGAT+GGG 0.459036 4.4:-1976676 MS.gene058548:CDS
GGAAGGGTTTGCGAGGGTGG+TGG 0.459551 4.4:-1976856 MS.gene058548:CDS
GAGGAAGGAATGTTTGCCTT+CGG 0.461475 4.4:-1976973 MS.gene058548:CDS
CGAGATGCCTACTGTTACAT+GGG 0.462699 4.4:-1977684 None:intergenic
TCCAAATCCTGCAATTCATC+AGG 0.465291 4.4:+1977584 None:intergenic
ATCCTAGCTAGAATCTTCTT+AGG 0.491214 4.4:+1977080 None:intergenic
GGGATTTCTAGGTCTAAACT+TGG 0.492563 4.4:-1977410 MS.gene058548:CDS
CATCATCTTCGATTATCTCA+AGG 0.503798 4.4:-1977621 MS.gene058548:CDS
GGCAATACCGTCGCAGGATG+TGG 0.504137 4.4:-1976764 MS.gene058548:CDS
TTACTTCTTCAAAAGTGAGA+TGG 0.508844 4.4:-1976677 MS.gene058548:CDS
TCCTAGGGATATTGGTCCAA+TGG 0.513309 4.4:-1977186 MS.gene058548:CDS
GTTACATGGGGTGTAATTCA+AGG 0.515509 4.4:-1977671 MS.gene058548:CDS
TTAACCAAGTAATCAACAAA+AGG 0.515918 4.4:+1977113 None:intergenic
TTTGAAGCTGAAGATTGATC+CGG 0.520863 4.4:-1976877 MS.gene058548:CDS
GATGTGGAGAAAGATGATAT+TGG 0.522013 4.4:-1977302 MS.gene058548:CDS
TAGTATTGGTGTTAATCCTA+GGG 0.522188 4.4:-1977201 MS.gene058548:CDS
ACGAGATGCCTACTGTTACA+TGG 0.523419 4.4:-1977685 None:intergenic
TAAGGATACTGTGTAACCAT+TGG 0.531997 4.4:+1977170 None:intergenic
ATCATCTTCGATTATCTCAA+GGG 0.534022 4.4:-1977620 MS.gene058548:CDS
AGTTTAAACCCTAAAAGTTG+AGG 0.546911 4.4:+1977260 None:intergenic
AGCTGAAGATTGATCCGGAA+GGG 0.553058 4.4:-1976872 MS.gene058548:CDS
ACTCGCAGCGCAATCAATTG+AGG 0.555993 4.4:+1976721 None:intergenic
TTCAACCGTTGAAGTTATGA+GGG 0.560167 4.4:-1977555 MS.gene058548:CDS
CAAAGAGAAACTCGTTTCGC+GGG 0.570276 4.4:-1977645 MS.gene058548:CDS
GAAGATTCTAGCTAGGATGT+TGG 0.572863 4.4:-1977075 MS.gene058548:CDS
GCAAAGAGAAACTCGTTTCG+CGG 0.577091 4.4:-1977646 MS.gene058548:CDS
ACACTAGCATGCAAAACTTG+TGG 0.577739 4.4:+1977368 None:intergenic
TGGTAGGGCAATACCGTCGC+AGG 0.580954 4.4:-1976770 MS.gene058548:CDS
ACGTTCCCTCATAACTTCAA+CGG 0.581773 4.4:+1977550 None:intergenic
GAGGCCTGTAAAAGAGCTTG+TGG 0.585209 4.4:-1976653 MS.gene058548:CDS
ACACTACAGCCCAAAATCAA+AGG 0.590303 4.4:+1977476 None:intergenic
TTGATCCGGAAGGGTTTGCG+AGG 0.614047 4.4:-1976863 MS.gene058548:CDS
TGCCTAAGAAGATTCTAGCT+AGG 0.620780 4.4:-1977082 MS.gene058548:CDS
TCTTCAAAAGTGAGATGGGG+AGG 0.627180 4.4:-1976672 MS.gene058548:CDS
GTTTCTTAGAGGACTTGATG+TGG 0.627869 4.4:-1977318 MS.gene058548:CDS
GGTGGTGGAGAAGATGCCAC+AGG 0.628330 4.4:-1976841 MS.gene058548:CDS
ACCATTGGACCAATATCCCT+AGG 0.638044 4.4:+1977185 None:intergenic
ATTACACCCCATGTAACAGT+AGG 0.644138 4.4:+1977677 None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG 0.645282 4.4:-1976675 MS.gene058548:CDS
TGATGAAGACTAACCACCTG+TGG 0.651476 4.4:+1976825 None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG 0.652425 4.4:-1976862 MS.gene058548:CDS
AAGCTGAAGATTGATCCGGA+AGG 0.664980 4.4:-1976873 MS.gene058548:CDS
ATACTAGCCACATCCTGCGA+CGG 0.678965 4.4:+1976757 None:intergenic
GGTGGAGAAGATGCCACAGG+TGG 0.679410 4.4:-1976838 MS.gene058548:intron
GGATACTGAGCAATAACCGA+AGG 0.689064 4.4:+1976957 None:intergenic
AGAGGCAACCCAATAATCTG+CGG 0.697237 4.4:+1976936 None:intergenic
GAGATGCCTACTGTTACATG+GGG 0.725465 4.4:-1977683 MS.gene058548:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACTGAAAAAATATTGTT+GGG + chr4.4:1977421-1977440 None:intergenic 20.0%
!! TCAAACTGAAAAAATATTGT+TGG + chr4.4:1977422-1977441 None:intergenic 20.0%
!! TTGAGTTTATTCAGAAATTA+GGG - chr4.4:1976788-1976807 MS.gene058548:intron 20.0%
!! TTGATTACTTGGTTAATTTA+GGG - chr4.4:1977208-1977227 MS.gene058548:CDS 20.0%
!!! AAAAATATCCTCAACTTTTA+GGG - chr4.4:1977046-1977065 MS.gene058548:CDS 20.0%
!!! TAGGGTATTTAGAAAAAATT+GGG - chr4.4:1976884-1976903 MS.gene058548:CDS 20.0%
!!! TTAGGGTATTTAGAAAAAAT+TGG - chr4.4:1976883-1976902 MS.gene058548:CDS 20.0%
! ATCAAAATGTGATTATGAAC+CGG - chr4.4:1977508-1977527 MS.gene058548:CDS 25.0%
! CTAATCAAACAATCAACATT+AGG + chr4.4:1977312-1977331 None:intergenic 25.0%
! GTTGAGTTTATTCAGAAATT+AGG - chr4.4:1976787-1976806 MS.gene058548:intron 25.0%
! GTTGATTACTTGGTTAATTT+AGG - chr4.4:1977207-1977226 MS.gene058548:CDS 25.0%
! TAGAAAAAATTGGGATTTCT+AGG - chr4.4:1976893-1976912 MS.gene058548:CDS 25.0%
! TTAACCAAGTAATCAACAAA+AGG + chr4.4:1977204-1977223 None:intergenic 25.0%
!! AAAAACATGATTCCTGTTTT+AGG - chr4.4:1976865-1976884 MS.gene058548:CDS 25.0%
!! AAAACATGATTCCTGTTTTA+GGG - chr4.4:1976866-1976885 MS.gene058548:CDS 25.0%
!! CAAAAATATCCTCAACTTTT+AGG - chr4.4:1977045-1977064 MS.gene058548:CDS 25.0%
!! TTTTCTAAATACCCTAAAAC+AGG + chr4.4:1976880-1976899 None:intergenic 25.0%
!!! AAATCAGTATCCTTTGATTT+TGG - chr4.4:1976828-1976847 MS.gene058548:intron 25.0%
!!! AATCAGTATCCTTTGATTTT+GGG - chr4.4:1976829-1976848 MS.gene058548:intron 25.0%
!!! ACACAGTATCCTTATTTTTT+AGG - chr4.4:1977153-1977172 MS.gene058548:CDS 25.0%
!!! CACAGTATCCTTATTTTTTA+GGG - chr4.4:1977154-1977173 MS.gene058548:CDS 25.0%
!!! GTTGATTGTTTGATTAGTTT+TGG - chr4.4:1977315-1977334 MS.gene058548:CDS 25.0%
AATTATTCCTGATGAATTGC+AGG - chr4.4:1976723-1976742 MS.gene058548:CDS 30.0%
ACTCTCATCCCTAAAAAATA+AGG + chr4.4:1977165-1977184 None:intergenic 30.0%
AGTTTAAACCCTAAAAGTTG+AGG + chr4.4:1977057-1977076 None:intergenic 30.0%
ATCATCTTCGATTATCTCAA+GGG - chr4.4:1976694-1976713 MS.gene058548:CDS 30.0%
CCTGTTATTAAGTTTCTTAG+AGG - chr4.4:1976985-1977004 MS.gene058548:CDS 30.0%
GAGAAAAGAGCTTATTTACT+TGG - chr4.4:1977261-1977280 MS.gene058548:CDS 30.0%
GTAGCTTATCTTGTTAGTAT+TGG - chr4.4:1977099-1977118 MS.gene058548:CDS 30.0%
TACTTCTTCAAAAGTGAGAT+GGG - chr4.4:1977638-1977657 MS.gene058548:CDS 30.0%
TTACTTCTTCAAAAGTGAGA+TGG - chr4.4:1977637-1977656 MS.gene058548:CDS 30.0%
! CCTCTAAGAAACTTAATAAC+AGG + chr4.4:1976988-1977007 None:intergenic 30.0%
!! AAAGCCTTTTGTTGATTACT+TGG - chr4.4:1977197-1977216 MS.gene058548:CDS 30.0%
!! TAGTATTGGTGTTAATCCTA+GGG - chr4.4:1977113-1977132 MS.gene058548:CDS 30.0%
!! TTAGTATTGGTGTTAATCCT+AGG - chr4.4:1977112-1977131 MS.gene058548:CDS 30.0%
!!! CTTTTAGGGTTTAAACTTGA+AGG - chr4.4:1977060-1977079 MS.gene058548:CDS 30.0%
!!! GTTTGATTAGTTTTGGTTTG+AGG - chr4.4:1977322-1977341 MS.gene058548:CDS 30.0%
!!! TATTTTTTAGGGATGAGAGT+TGG - chr4.4:1977165-1977184 MS.gene058548:CDS 30.0%
ACTTCTTCAAAAGTGAGATG+GGG - chr4.4:1977639-1977658 MS.gene058548:CDS 35.0%
ATCCTAGCTAGAATCTTCTT+AGG + chr4.4:1977237-1977256 None:intergenic 35.0%
CATCATCTTCGATTATCTCA+AGG - chr4.4:1976693-1976712 MS.gene058548:CDS 35.0%
CTACCAAGTAAAAACTCAAC+CGG + chr4.4:1977530-1977549 None:intergenic 35.0%
GATGTGGAGAAAGATGATAT+TGG - chr4.4:1977012-1977031 MS.gene058548:CDS 35.0%
TAAGGATACTGTGTAACCAT+TGG + chr4.4:1977147-1977166 None:intergenic 35.0%
TTCAACCGTTGAAGTTATGA+GGG - chr4.4:1976759-1976778 MS.gene058548:CDS 35.0%
TTCGATTATCTCAAGGGTTT+GGG - chr4.4:1976700-1976719 MS.gene058548:CDS 35.0%
! GGTTGAGTTTTTACTTGGTA+GGG - chr4.4:1977529-1977548 MS.gene058548:CDS 35.0%
! TTTGAAGCTGAAGATTGATC+CGG - chr4.4:1977437-1977456 MS.gene058548:CDS 35.0%
!! GAAGACAATTTAGCCTTAAG+AGG + chr4.4:1977399-1977418 None:intergenic 35.0%
!!! GATTAGTTTTGGTTTGAGGA+AGG - chr4.4:1977326-1977345 MS.gene058548:CDS 35.0%
ACACTACAGCCCAAAATCAA+AGG + chr4.4:1976841-1976860 None:intergenic 40.0%
ACACTAGCATGCAAAACTTG+TGG + chr4.4:1976949-1976968 None:intergenic 40.0%
ACGTTCCCTCATAACTTCAA+CGG + chr4.4:1976767-1976786 None:intergenic 40.0%
ATTACACCCCATGTAACAGT+AGG + chr4.4:1976640-1976659 None:intergenic 40.0%
CTCAGTATCCGCAGATTATT+GGG - chr4.4:1977370-1977389 MS.gene058548:CDS 40.0%
CTCATAACTTCAACGGTTGA+AGG + chr4.4:1976760-1976779 None:intergenic 40.0%
CTTCAACCGTTGAAGTTATG+AGG - chr4.4:1976758-1976777 MS.gene058548:CDS 40.0%
CTTCGATTATCTCAAGGGTT+TGG - chr4.4:1976699-1976718 MS.gene058548:CDS 40.0%
GGTGTTAATCCTAGGGATAT+TGG - chr4.4:1977120-1977139 MS.gene058548:CDS 40.0%
GTTACATGGGGTGTAATTCA+AGG - chr4.4:1976643-1976662 MS.gene058548:CDS 40.0%
GTTTCTTAGAGGACTTGATG+TGG - chr4.4:1976996-1977015 MS.gene058548:CDS 40.0%
TCCAAATCCTGCAATTCATC+AGG + chr4.4:1976733-1976752 None:intergenic 40.0%
TCCTGATGAATTGCAGGATT+TGG - chr4.4:1976729-1976748 MS.gene058548:CDS 40.0%
! AACTCCACAAGCTCTTTTAC+AGG + chr4.4:1977668-1977687 None:intergenic 40.0%
! CGGTTGAGTTTTTACTTGGT+AGG - chr4.4:1977528-1977547 MS.gene058548:CDS 40.0%
! GAACCGGTTGAGTTTTTACT+TGG - chr4.4:1977524-1977543 MS.gene058548:CDS 40.0%
! GAAGATTCTAGCTAGGATGT+TGG - chr4.4:1977239-1977258 MS.gene058548:CDS 40.0%
! GATTATTGGGTTGCCTCTTA+AGG - chr4.4:1977383-1977402 MS.gene058548:CDS 40.0%
! GGGATTTCTAGGTCTAAACT+TGG - chr4.4:1976904-1976923 MS.gene058548:CDS 40.0%
! TGATTTTGGGCTGTAGTGTT+CGG - chr4.4:1976842-1976861 MS.gene058548:CDS 40.0%
! TGCCTAAGAAGATTCTAGCT+AGG - chr4.4:1977232-1977251 MS.gene058548:CDS 40.0%
AAGCTGAAGATTGATCCGGA+AGG - chr4.4:1977441-1977460 MS.gene058548:CDS 45.0%
ACCATTGGACCAATATCCCT+AGG + chr4.4:1977132-1977151 None:intergenic 45.0%
AGAGGCAACCCAATAATCTG+CGG + chr4.4:1977381-1977400 None:intergenic 45.0%
AGCTGAAGATTGATCCGGAA+GGG - chr4.4:1977442-1977461 MS.gene058548:CDS 45.0%
CAAAGAGAAACTCGTTTCGC+GGG - chr4.4:1976669-1976688 MS.gene058548:CDS 45.0%
GAGGAAGGAATGTTTGCCTT+CGG - chr4.4:1977341-1977360 MS.gene058548:CDS 45.0%
GCAAAGAGAAACTCGTTTCG+CGG - chr4.4:1976668-1976687 MS.gene058548:CDS 45.0%
GCTCAGTATCCGCAGATTAT+TGG - chr4.4:1977369-1977388 MS.gene058548:CDS 45.0%
GGATACTGAGCAATAACCGA+AGG + chr4.4:1977360-1977379 None:intergenic 45.0%
TCCTAGGGATATTGGTCCAA+TGG - chr4.4:1977128-1977147 MS.gene058548:CDS 45.0%
TCTTCAAAAGTGAGATGGGG+AGG - chr4.4:1977642-1977661 MS.gene058548:CDS 45.0%
TGATGAAGACTAACCACCTG+TGG + chr4.4:1977492-1977511 None:intergenic 45.0%
ACTCGCAGCGCAATCAATTG+AGG + chr4.4:1977596-1977615 None:intergenic 50.0%
ATACTAGCCACATCCTGCGA+CGG + chr4.4:1977560-1977579 None:intergenic 50.0%
GAGGCCTGTAAAAGAGCTTG+TGG - chr4.4:1977661-1977680 MS.gene058548:CDS 50.0%
GTCGCAGGATGTGGCTAGTA+TGG - chr4.4:1977559-1977578 MS.gene058548:CDS 55.0%
TGATCCGGAAGGGTTTGCGA+GGG - chr4.4:1977452-1977471 MS.gene058548:CDS 55.0%
TTGATCCGGAAGGGTTTGCG+AGG - chr4.4:1977451-1977470 MS.gene058548:CDS 55.0%
ACCACCCTCGCAAACCCTTC+CGG + chr4.4:1977459-1977478 None:intergenic 60.0%
GGCAATACCGTCGCAGGATG+TGG - chr4.4:1977550-1977569 MS.gene058548:CDS 60.0%
GGTGGAGAAGATGCCACAGG+TGG - chr4.4:1977476-1977495 MS.gene058548:CDS 60.0%
TGGTAGGGCAATACCGTCGC+AGG - chr4.4:1977544-1977563 MS.gene058548:CDS 60.0%
!! GGTGGTGGAGAAGATGCCAC+AGG - chr4.4:1977473-1977492 MS.gene058548:CDS 60.0%
GGAAGGGTTTGCGAGGGTGG+TGG - chr4.4:1977458-1977477 MS.gene058548:CDS 65.0%
TCCGGAAGGGTTTGCGAGGG+TGG - chr4.4:1977455-1977474 MS.gene058548:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 1976634 1977702 1976634 ID=MS.gene058548
chr4.4 mRNA 1976634 1977702 1976634 ID=MS.gene058548.t1;Parent=MS.gene058548
chr4.4 exon 1976839 1977702 1976839 ID=MS.gene058548.t1.exon1;Parent=MS.gene058548.t1
chr4.4 CDS 1976839 1977702 1976839 ID=cds.MS.gene058548.t1;Parent=MS.gene058548.t1
chr4.4 exon 1976634 1976800 1976634 ID=MS.gene058548.t1.exon2;Parent=MS.gene058548.t1
chr4.4 CDS 1976634 1976800 1976634 ID=cds.MS.gene058548.t1;Parent=MS.gene058548.t1
Gene Sequence

>MS.gene058548

ATGCCTACTGTTACATGGGGTGTAATTCAAGGTCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTTATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGATTGATGATATAAATCAGTATCCTTTGATTTTGGGCTGTAGTGTTCGGAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTGGAGAAAGATGATATTGGATTTGTGTTGCAAAAATATCCTCAACTTTTAGGGTTTAAACTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTTTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGCTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTATTGGGTTGCCTCTTAAGGCTAAATTGTCTTCCCAACAATATTTTTTCAGTTTGAAGCTGAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAATTGATTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGGCCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCAC

Protein sequence

>MS.gene058548.t1

MPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPQLLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPFVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVFLLGRAIPSQDVASMVIKCPQLIALRVELMKNSYYFFKSEMGRPVKELVEFPEYF