AlfalfaGEDB | MS.gene74641

M. sativa cultivar XinJiangDaYe / MS.gene74641

KEGG: K22377
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74641.t1	XP_013454168.1	87	46	6	0	32	77	1597	1642	8.50E-12	79.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74641.t1	Q9FGI1	44.4	72	40	0	7	78	1567	1638	9.9e-09	60.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74641.t1	G7KFI6	87.0	46	6	0	32	77	1402	1447	6.2e-12	79.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052447	MS.gene74641	0.849274	3.59E-60	-1.69E-46
MS.gene05329	MS.gene74641	0.806404	8.36E-50	-1.69E-46
MS.gene055952	MS.gene74641	0.805293	1.43E-49	-1.69E-46
MS.gene059458	MS.gene74641	0.811484	6.84E-51	-1.69E-46
MS.gene059460	MS.gene74641	0.80454	2.06E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74641.t1	MTR_5g074510	68.852	61	19	0	14	74	1384	1444	1.64e-20	84.0
MS.gene74641.t1	MTR_5g074510	68.852	61	19	0	14	74	1579	1639	1.64e-20	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74641.t1	AT5G58410	46.970	66	35	0	7	72	1567	1632	1.36e-13	64.3
MS.gene74641.t1	AT5G58410	46.970	66	35	0	7	72	1554	1619	1.40e-13	64.3

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Find 13 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCAATCTTTCTAACT+GGG	0.546425	6.3:-22541501	None:intergenic
AACCTCAATCTTTCTAACTG+GGG	0.664072	6.3:-22541500	None:intergenic
AAGAAAGATGCAGAGCTTTC+TGG	0.220031	6.3:+22542202	MS.gene74641:CDS
AGGTGAGACATTTACAAAGA+TGG	0.461688	6.3:-22542689	None:intergenic
CAAACCTCAATCTTTCTAAC+TGG	0.286509	6.3:-22541502	None:intergenic
CTACAGGAATATGTTGAAAA+AGG	0.283729	6.3:-22542153	None:intergenic
CTCCCCAGTTAGAAAGATTG+AGG	0.453096	6.3:+22541498	MS.gene74641:CDS
CTTCTTCAGACTCTGATTCA+AGG	0.407382	6.3:-22542182	None:intergenic
TAGCAGAATCTTGAATGTAC+TGG	0.456123	6.3:-22542111	None:intergenic
TGATTCAAGGGAATCTCTAC+AGG	0.493305	6.3:-22542169	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAACTGCACTTTATG+TGG	-	chr6.3:22542524-22542543	None:intergenic	30.0%
AAACCTCAATCTTTCTAACT+GGG	-	chr6.3:22541504-22541523	None:intergenic	30.0%
AAGTGAAGTTGGAAAACATT+TGG	-	chr6.3:22540940-22540959	None:intergenic	30.0%
AGTGAAGTTGGAAAACATTT+GGG	-	chr6.3:22540939-22540958	None:intergenic	30.0%
CGGTACATATTTAGTTATCT+TGG	+	chr6.3:22542586-22542605	MS.gene74641:intron	30.0%
CTACAGGAATATGTTGAAAA+AGG	-	chr6.3:22542156-22542175	None:intergenic	30.0%
CTGCAGAAAAATTTCATGTT+GGG	-	chr6.3:22541412-22541431	None:intergenic	30.0%
GATAAAATTACATCACTTGC+TGG	+	chr6.3:22542315-22542334	MS.gene74641:intron	30.0%
GATATAAACTTGAAGTGAGA+TGG	+	chr6.3:22541174-22541193	MS.gene74641:intron	30.0%
GTCTAAGTCATATACTCAAA+TGG	+	chr6.3:22542640-22542659	MS.gene74641:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	22540786	22542700	22540786	ID=MS.gene74641
chr6.3	mRNA	22540786	22542700	22540786	ID=MS.gene74641.t1;Parent=MS.gene74641
chr6.3	exon	22540786	22540792	22540786	ID=MS.gene74641.t1.exon1;Parent=MS.gene74641.t1
chr6.3	CDS	22540786	22540792	22540786	ID=cds.MS.gene74641.t1;Parent=MS.gene74641.t1
chr6.3	exon	22541432	22541519	22541432	ID=MS.gene74641.t1.exon2;Parent=MS.gene74641.t1
chr6.3	CDS	22541432	22541519	22541432	ID=cds.MS.gene74641.t1;Parent=MS.gene74641.t1
chr6.3	exon	22542099	22542223	22542099	ID=MS.gene74641.t1.exon3;Parent=MS.gene74641.t1
chr6.3	CDS	22542099	22542223	22542099	ID=cds.MS.gene74641.t1;Parent=MS.gene74641.t1
chr6.3	exon	22542684	22542700	22542684	ID=MS.gene74641.t1.exon4;Parent=MS.gene74641.t1
chr6.3	CDS	22542684	22542700	22542684	ID=cds.MS.gene74641.t1;Parent=MS.gene74641.t1

Gene Sequence

>MS.gene74641

ATGAGGAGTATGGGAGTTCTCTAGTATTGAGGTTTCAAGTTCCTTTGCATTTGAGCCATTTAAAAATAGGGTTAAATATATTTTTTATCCCTATAAATATGTCAATTTTTTGATTTAGTCTCTCTAAAAAATTCCTTCAACTTTTAGTCCCCCAAATGTTTTCCAACTTCACTTTTTGTCCCTCCTTTAAAGTAAACTCATATGTGGAGTTCATATTTTTGAATAAAATTTTACAAAAAAATTTATAATCTTATAAGAATCTCTCCCAAAAAAATTTAGAATTTTTTAACAAAACATGAATTAAATATGAATTTTTATATTTTGGTTGATTTAATGACAGGCAGATAATTGTCGTTGCGGGGTATTAAAGTAATTTCAGATAGTCAAAGATATAAACTTGAAGTGAGATGGGCAATTTTCTAGAGATAAATGAGTATTTTACAAACAAGGCCCATTTCTTATTATATATATATATATATATATATATATATATATATATATATATAAAAGTTAACCCATAAGCTAATTTTAACCCTAATTTTAACCTAAACCCTAGGGCTAAAATTTATTTGTAACAAACGGGATCTTAGGTAAATTGTTTATTGTTTATGTTTATTTTACTTCCCAACATGAAATTTTTCTGCAGGCGATTTGCTAGATAGAACATCATCAGGGACAGCACAAGTTTTGACAACTAACAATCAAGCTAACACTCCCCAGTTAGAAAGATTGAGGTTTGTACATTATTTTTTTTTGTTTATAATTGCATAAACATAATATGTGTAATGGGCTCTATACTGAGTTCCTTTTCGTTAATTTTTTTGTGCCTTCAAATGTATGAAACATTACTCCCCAATTAGAGAGCTTGATGTGTTAGCGGCGTCGATATGCTGACGGAGAGGGAACAGAAAATTCTCAGCGACACAGTTGATTGATGAGGTTTTACTATCCAATCAATGTATGCTTTAGTTTATTAGTGTATTTTATTTTGGGTTTTTAATTTATTTTGTTGCTGATATTTTGAGGATGATGGTTGTGGGTGAGTATTGCAAAAGTAACAGTTTTCATGGTTGTGGTTGTCGAATCTTCTTTTTTGAATATTTGAGCTTGGTGGATCTGAAATGGTTGTGAGTACCGTGTGTTTGTGAAATTTTTTGACCGTGTGTTTGTGAAATTTTTTGAATGAACAAAGAGAGAAATAATTGCAATATTTTATAGAGGGGTGCTTTCTATTAAGGATATTGAAGAAAATCCACTGTCATCTGAAGAAAGAAACTTTTGCAAACTTATCTGTGTTCATCATCATCTGATAGGGAGAGACTGATCCAGTACATTCAAGATTCTGCTACTTTAGTTATTTTAGATTGCCTTTTTCAACATATTCCTGTAGAGATTCCCTTGAATCAGAGTCTGAAGAAGAAAGATGCAGAGCTTTCTGGTAGGTTATCAAAATTTGCAAGTGCTGCGTTTAAGCCACCAACACTGGTTCACTGTTGTTCTCTGTGGAATCTCTTTGGCCTATTGAGTCAGATAAAATTACATCACTTGCTGGAGCAATATATGGCTTGATGCTTCATGTTATTCCTGCTTATGTTCGTGGCTGCTTATGTTCGTGGCTGGTTTAATGATTTGTGCAATCGTAACATAACAACTGTCATTGAATCCTTTACCAGGACCTGCTGCAGCCATCCTCTCATTGCAGATGAATTGTCCCAGGTATGGTGTAATTTCATGTCCACATAAAGTGCAGTTTTGTTTTTTTGTTAAACTGCCTGATTTTGTTAAGTTGCACAATATACTCGGTACATATTTAGTTATCTTGGTTCTGTTTTTGTTTTCATACACCTTTCATTTGTCTAAGTCATATACTCAAATGGTTTTTTTTTTTTCCTTTGCAGGGAAACCATCTTTGTAA

Protein sequence

>MS.gene74641.t1

MRSDLLDRTSSGTAQVLTTNNQANTPQLERLRERLIQYIQDSATLVILDCLFQHIPVEIPLNQSLKKKDAELSGKPSL