Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75298.t1 | XP_013462007.1 | 91.6 | 442 | 33 | 1 | 1 | 442 | 1 | 438 | 1.70E-229 | 805.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75298.t1 | Q9SXC4 | 43.7 | 364 | 177 | 5 | 73 | 436 | 55 | 390 | 2.2e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75298.t1 | G7ZWJ7 | 91.6 | 442 | 33 | 1 | 1 | 442 | 1 | 438 | 1.2e-229 | 805.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052367 | MS.gene75298 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene75298 | 0.803787 | 2.95E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene75298 | 0.800158 | 1.64E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene75298 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene061260 | MS.gene75298 | 0.816177 | 6.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75298.t1 | MTR_3g110142 | 91.629 | 442 | 33 | 1 | 1 | 442 | 1 | 438 | 0.0 | 806 |
| MS.gene75298.t1 | MTR_3g110142 | 90.206 | 388 | 34 | 1 | 1 | 388 | 1 | 384 | 0.0 | 691 |
| MS.gene75298.t1 | MTR_3g111060 | 41.365 | 469 | 210 | 11 | 1 | 436 | 1 | 437 | 4.12e-114 | 342 |
| MS.gene75298.t1 | MTR_5g016600 | 28.866 | 291 | 165 | 9 | 182 | 435 | 147 | 432 | 7.20e-24 | 104 |
| MS.gene75298.t1 | MTR_4g094912 | 26.573 | 286 | 174 | 9 | 182 | 435 | 152 | 433 | 2.07e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75298.t1 | AT1G27600 | 41.230 | 439 | 206 | 10 | 1 | 436 | 1 | 390 | 1.58e-108 | 326 |
| MS.gene75298.t1 | AT1G27600 | 41.230 | 439 | 206 | 10 | 1 | 436 | 1 | 390 | 1.58e-108 | 326 |
| MS.gene75298.t1 | AT2G37090 | 33.333 | 354 | 220 | 6 | 68 | 416 | 1 | 343 | 1.72e-69 | 224 |
| MS.gene75298.t1 | AT4G36890 | 29.153 | 295 | 164 | 9 | 182 | 435 | 156 | 446 | 6.50e-28 | 116 |
| MS.gene75298.t1 | AT5G67230 | 28.866 | 291 | 168 | 8 | 182 | 435 | 148 | 436 | 7.13e-28 | 115 |
Find 90 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGTGATGAATCATATT+TGG | 0.212343 | 3.3:+90517564 | MS.gene75298:CDS |
| GACGGTCGGTGCCGCTTCTT+TGG | 0.259496 | 3.3:-90518249 | None:intergenic |
| CATCGGATGGCATAGACTTC+TGG | 0.266735 | 3.3:-90517147 | None:intergenic |
| CTTGTCACAAACTTTGAAAT+TGG | 0.298785 | 3.3:+90517657 | MS.gene75298:CDS |
| TCAATATTCCACAAAGATCT+TGG | 0.315694 | 3.3:-90517232 | None:intergenic |
| CCTTCAACAGTACGATACTA+TGG | 0.319421 | 3.3:+90518223 | MS.gene75298:CDS |
| CACTTCACTTCCATTACAAA+TGG | 0.360558 | 3.3:-90518130 | None:intergenic |
| TTCAGCAAATGAGAGAAATA+AGG | 0.372244 | 3.3:+90517917 | MS.gene75298:CDS |
| ATCGGATGGCATAGACTTCT+GGG | 0.372385 | 3.3:-90517146 | None:intergenic |
| GCAGTTGTGGCTCGAGGAAC+CGG | 0.387864 | 3.3:-90517067 | None:intergenic |
| AATATGATTCATCACTGAAT+TGG | 0.391631 | 3.3:-90517561 | None:intergenic |
| ATTTCTTGACATGAGATTCA+AGG | 0.399068 | 3.3:-90517365 | None:intergenic |
| AGAACAACCTAGACATCATT+TGG | 0.399388 | 3.3:+90518721 | MS.gene75298:CDS |
| GACCGTCTCATGAACCTATC+AGG | 0.403510 | 3.3:+90518265 | MS.gene75298:CDS |
| CCATAGTATCGTACTGTTGA+AGG | 0.411039 | 3.3:-90518223 | None:intergenic |
| TTCTCATAAGAAGGCTCCTA+TGG | 0.412216 | 3.3:-90517807 | None:intergenic |
| CTCTCGAGCAGTCGTTCATT+AGG | 0.418918 | 3.3:-90518635 | None:intergenic |
| TTTCTCCAAAGCTGACCCTT+AGG | 0.431161 | 3.3:-90517265 | None:intergenic |
| ACCTTCTTCATTCACCTCAC+TGG | 0.433976 | 3.3:+90517177 | MS.gene75298:CDS |
| ACTGCTCGAGAGTTATGGTT+TGG | 0.441983 | 3.3:+90518646 | MS.gene75298:CDS |
| AATCTCATGTCAAGAAATCA+AGG | 0.442989 | 3.3:+90517370 | MS.gene75298:CDS |
| ACTGATTCGAGCTGCCTGAT+AGG | 0.446665 | 3.3:-90518279 | None:intergenic |
| TGGTCTCCCCTCCTTTGTTG+TGG | 0.448208 | 3.3:+90517677 | MS.gene75298:CDS |
| TTGCAAGATTTCTCATAAGA+AGG | 0.449145 | 3.3:-90517816 | None:intergenic |
| TTGCAAGGGCCCATTTGTAA+TGG | 0.449650 | 3.3:+90518120 | MS.gene75298:CDS |
| CAAAACCTAAGGGTCAGCTT+TGG | 0.452259 | 3.3:+90517260 | MS.gene75298:CDS |
| GAACGACTGCTCGAGAGTTA+TGG | 0.454061 | 3.3:+90518641 | MS.gene75298:CDS |
| CAATATTCCACAAAGATCTT+GGG | 0.454521 | 3.3:-90517231 | None:intergenic |
| TCAGGCAGCTCGAATCAGTC+AGG | 0.459366 | 3.3:+90518283 | MS.gene75298:CDS |
| AATCAGATGGGAATTCTAAA+CGG | 0.469390 | 3.3:+90518175 | MS.gene75298:CDS |
| TTCACAGCCTCATCAACTAA+TGG | 0.473477 | 3.3:-90517463 | None:intergenic |
| ATCAGTCAGGGAAAATTTGT+GGG | 0.473922 | 3.3:+90518296 | MS.gene75298:CDS |
| ATCTACATTTCCTGCAGTTG+TGG | 0.474203 | 3.3:-90517080 | None:intergenic |
| AATCAGTCAGGGAAAATTTG+TGG | 0.485510 | 3.3:+90518295 | MS.gene75298:CDS |
| CATGAGATTCAAGGACAAGT+TGG | 0.496224 | 3.3:-90517356 | None:intergenic |
| TATTGAGAAATCAAAACCTA+AGG | 0.503406 | 3.3:+90517249 | MS.gene75298:CDS |
| ATTGAAACTCATCGCCTCAA+TGG | 0.503520 | 3.3:+90517847 | MS.gene75298:CDS |
| TAAGGGTCAGCTTTGGAGAA+AGG | 0.503938 | 3.3:+90517267 | MS.gene75298:CDS |
| TAGGAGAGGACTTAGATAAC+GGG | 0.506171 | 3.3:-90517120 | None:intergenic |
| TGTTGAAGATGAAAGTGAAA+TGG | 0.510015 | 3.3:+90518608 | MS.gene75298:CDS |
| CACACAAATAATGAATCAGA+TGG | 0.517915 | 3.3:+90518162 | MS.gene75298:CDS |
| TGTAATGGAAGTGAAGTGAT+TGG | 0.518298 | 3.3:+90518135 | MS.gene75298:CDS |
| GAAGATTCCAAATGATGTCT+AGG | 0.519367 | 3.3:-90518728 | None:intergenic |
| ACTTCACTTCCATTACAAAT+GGG | 0.520026 | 3.3:-90518129 | None:intergenic |
| TGAAATAGATGATTGTAAGT+TGG | 0.528715 | 3.3:-90517616 | None:intergenic |
| ACAAGTTGGTTGATGCGAGC+GGG | 0.531037 | 3.3:-90517342 | None:intergenic |
| GTTCCTCGAGCCACAACTGC+AGG | 0.532105 | 3.3:+90517070 | MS.gene75298:CDS |
| TTTGCAGGCGATTTGGAACA+TGG | 0.535751 | 3.3:+90518058 | MS.gene75298:intron |
| TGGTTGATGCGAGCGGGATG+AGG | 0.537179 | 3.3:-90517336 | None:intergenic |
| TCCAGTGAGGTGAATGAAGA+AGG | 0.541411 | 3.3:-90517178 | None:intergenic |
| CGGTTTCATGCTGAAATGCA+AGG | 0.542684 | 3.3:+90518195 | MS.gene75298:CDS |
| AATTAGAAGAACCTTGTCTC+CGG | 0.554613 | 3.3:+90517048 | MS.gene75298:CDS |
| GACAAGTTGGTTGATGCGAG+CGG | 0.562480 | 3.3:-90517343 | None:intergenic |
| CAAAATAAACAATTCCATTG+AGG | 0.568694 | 3.3:-90517861 | None:intergenic |
| AAGGCTCCTATGGCTTGTGT+TGG | 0.570767 | 3.3:-90517797 | None:intergenic |
| GACTGTTGCAAGATTATCAA+AGG | 0.571178 | 3.3:+90518080 | MS.gene75298:CDS |
| CAACAATCCACAACAAAGGA+GGG | 0.577571 | 3.3:-90517684 | None:intergenic |
| AGAAGCGGCATTCTCTTGCA+AGG | 0.579793 | 3.3:+90518105 | MS.gene75298:CDS |
| GTAGGAGAGGACTTAGATAA+CGG | 0.580559 | 3.3:-90517121 | None:intergenic |
| GGCTCGAGGAACCGGAGACA+AGG | 0.587801 | 3.3:-90517059 | None:intergenic |
| CTTCAACAGTACGATACTAT+GGG | 0.589294 | 3.3:+90518224 | MS.gene75298:CDS |
| ATTGAGAAATCAAAACCTAA+GGG | 0.590510 | 3.3:+90517250 | MS.gene75298:CDS |
| CAGAAGTCTATGCCATCCGA+TGG | 0.591401 | 3.3:+90517148 | MS.gene75298:CDS |
| ACACAAATAATGAATCAGAT+GGG | 0.594005 | 3.3:+90518163 | MS.gene75298:CDS |
| TTTCCTGCAGTTGTGGCTCG+AGG | 0.597173 | 3.3:-90517073 | None:intergenic |
| TGAGACACCATTAGTTGATG+AGG | 0.597575 | 3.3:+90517456 | MS.gene75298:CDS |
| AACAATCCACAACAAAGGAG+GGG | 0.603273 | 3.3:-90517683 | None:intergenic |
| CGGATGGCATAGACTTCTGG+GGG | 0.604515 | 3.3:-90517144 | None:intergenic |
| TATGAAGAATTTCACACAAG+GGG | 0.607294 | 3.3:-90518750 | None:intergenic |
| ACAACAATCCACAACAAAGG+AGG | 0.607664 | 3.3:-90517685 | None:intergenic |
| TGAAGAAGGTAACAATCCAT+CGG | 0.609035 | 3.3:-90517164 | None:intergenic |
| GAAGGTAACAATCCATCGGA+TGG | 0.617846 | 3.3:-90517160 | None:intergenic |
| CAAGAACAAGAACTAACAGA+TGG | 0.626873 | 3.3:+90517514 | MS.gene75298:CDS |
| TACTATGGGATCCAAAGAAG+CGG | 0.628826 | 3.3:+90518238 | MS.gene75298:CDS |
| GAAGCGGCATTCTCTTGCAA+GGG | 0.630624 | 3.3:+90518106 | MS.gene75298:CDS |
| TGATAGGTTCATGAGACGGT+CGG | 0.632869 | 3.3:-90518263 | None:intergenic |
| TCGGATGGCATAGACTTCTG+GGG | 0.645263 | 3.3:-90517145 | None:intergenic |
| AGATTATCAAAGGATAGAAG+CGG | 0.648323 | 3.3:+90518090 | MS.gene75298:CDS |
| ATGGAAGTGAAGTGATTGGA+TGG | 0.650614 | 3.3:+90518139 | MS.gene75298:CDS |
| CAGGCAGCTCGAATCAGTCA+GGG | 0.651988 | 3.3:+90518284 | MS.gene75298:CDS |
| TGCCTGATAGGTTCATGAGA+CGG | 0.656114 | 3.3:-90518267 | None:intergenic |
| TTATGAAGAATTTCACACAA+GGG | 0.661763 | 3.3:-90518751 | None:intergenic |
| TCAACAACAATCCACAACAA+AGG | 0.663654 | 3.3:-90517688 | None:intergenic |
| TGAAGATGAAAGTGAAATGG+AGG | 0.667770 | 3.3:+90518611 | MS.gene75298:CDS |
| TTTATGAAGAATTTCACACA+AGG | 0.675371 | 3.3:-90518752 | None:intergenic |
| ATCTAACCAACACAAGCCAT+AGG | 0.684632 | 3.3:+90517791 | MS.gene75298:CDS |
| AAAAGCACTGGAGTCCAGTG+AGG | 0.702864 | 3.3:-90517191 | None:intergenic |
| GAAGATGAAAGTGAAATGGA+GGG | 0.738783 | 3.3:+90518612 | MS.gene75298:CDS |
| AGGAGAGGACTTAGATAACG+GGG | 0.743514 | 3.3:-90517119 | None:intergenic |
| GGATGGCATAGACTTCTGGG+GGG | 0.817496 | 3.3:-90517143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATATGATTCATCACTGAAT+TGG | - | chr3.3:90517564-90517583 | None:intergenic | 25.0% |
| ! | ACACAAATAATGAATCAGAT+GGG | + | chr3.3:90518163-90518182 | MS.gene75298:CDS | 25.0% |
| ! | ATTCAGTGATGAATCATATT+TGG | + | chr3.3:90517564-90517583 | MS.gene75298:CDS | 25.0% |
| ! | ATTCCTTCTATCCTAAAAAA+TGG | + | chr3.3:90518691-90518710 | MS.gene75298:CDS | 25.0% |
| ! | ATTGAGAAATCAAAACCTAA+GGG | + | chr3.3:90517250-90517269 | MS.gene75298:CDS | 25.0% |
| ! | ATTGATCAAAACATCATTTC+AGG | - | chr3.3:90518533-90518552 | None:intergenic | 25.0% |
| ! | CAAAATAAACAATTCCATTG+AGG | - | chr3.3:90517864-90517883 | None:intergenic | 25.0% |
| ! | CCATGAAACAAATGAAAAAA+TGG | - | chr3.3:90517300-90517319 | None:intergenic | 25.0% |
| ! | TATTGAGAAATCAAAACCTA+AGG | + | chr3.3:90517249-90517268 | MS.gene75298:CDS | 25.0% |
| ! | TGAAATAGATGATTGTAAGT+TGG | - | chr3.3:90517619-90517638 | None:intergenic | 25.0% |
| ! | TTAGTTCAAACAATGTTACT+CGG | + | chr3.3:90517944-90517963 | MS.gene75298:intron | 25.0% |
| !! | AAATCAAGGTTTTTCTTTTG+AGG | + | chr3.3:90517384-90517403 | MS.gene75298:CDS | 25.0% |
| !! | ACTTAGCATATTTTCTTCTT+TGG | + | chr3.3:90518325-90518344 | MS.gene75298:intron | 25.0% |
| !! | TTTTTCATTTGTTTCATGGT+TGG | + | chr3.3:90517301-90517320 | MS.gene75298:CDS | 25.0% |
| !!! | AATCCATTTTTTAGGATAGA+AGG | - | chr3.3:90518697-90518716 | None:intergenic | 25.0% |
| !!! | CCATTTTTTCATTTGTTTCA+TGG | + | chr3.3:90517297-90517316 | MS.gene75298:CDS | 25.0% |
| !!! | TTCTCTGTAATCCATTTTTT+AGG | - | chr3.3:90518705-90518724 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTCGCTATATGC+AGG | + | chr3.3:90518563-90518582 | MS.gene75298:intron | 25.0% |
| AATCAGATGGGAATTCTAAA+CGG | + | chr3.3:90518175-90518194 | MS.gene75298:CDS | 30.0% | |
| AATCTCATGTCAAGAAATCA+AGG | + | chr3.3:90517370-90517389 | MS.gene75298:CDS | 30.0% | |
| ACTTCACTTCCATTACAAAT+GGG | - | chr3.3:90518132-90518151 | None:intergenic | 30.0% | |
| AGATTATCAAAGGATAGAAG+CGG | + | chr3.3:90518090-90518109 | MS.gene75298:CDS | 30.0% | |
| ATTTCTTGACATGAGATTCA+AGG | - | chr3.3:90517368-90517387 | None:intergenic | 30.0% | |
| CAATATTCCACAAAGATCTT+GGG | - | chr3.3:90517234-90517253 | None:intergenic | 30.0% | |
| CACACAAATAATGAATCAGA+TGG | + | chr3.3:90518162-90518181 | MS.gene75298:CDS | 30.0% | |
| TATGTAACATTTGTCCTTTG+CGG | + | chr3.3:90518420-90518439 | MS.gene75298:intron | 30.0% | |
| TCAATATTCCACAAAGATCT+TGG | - | chr3.3:90517235-90517254 | None:intergenic | 30.0% | |
| TGTTGAAGATGAAAGTGAAA+TGG | + | chr3.3:90518608-90518627 | MS.gene75298:CDS | 30.0% | |
| TTCAGCAAATGAGAGAAATA+AGG | + | chr3.3:90517917-90517936 | MS.gene75298:CDS | 30.0% | |
| TTCTACATACTCTCATGTTA+TGG | + | chr3.3:90518453-90518472 | MS.gene75298:intron | 30.0% | |
| TTGCAAGATTTCTCATAAGA+AGG | - | chr3.3:90517819-90517838 | None:intergenic | 30.0% | |
| !! | CTTGTCACAAACTTTGAAAT+TGG | + | chr3.3:90517657-90517676 | MS.gene75298:CDS | 30.0% |
| !! | CTTTCCTTCAATATTTTTGC+AGG | + | chr3.3:90518043-90518062 | MS.gene75298:intron | 30.0% |
| !! | TTCATGGTTGGTGTTTTTAT+TGG | + | chr3.3:90517313-90517332 | MS.gene75298:CDS | 30.0% |
| AATCAGTCAGGGAAAATTTG+TGG | + | chr3.3:90518295-90518314 | MS.gene75298:CDS | 35.0% | |
| AATTAGAAGAACCTTGTCTC+CGG | + | chr3.3:90517048-90517067 | MS.gene75298:CDS | 35.0% | |
| AGAACAACCTAGACATCATT+TGG | + | chr3.3:90518721-90518740 | MS.gene75298:CDS | 35.0% | |
| ATCAGTCAGGGAAAATTTGT+GGG | + | chr3.3:90518296-90518315 | MS.gene75298:CDS | 35.0% | |
| ATCGCCTGCAAAAATATTGA+AGG | - | chr3.3:90518050-90518069 | None:intergenic | 35.0% | |
| CAAGAACAAGAACTAACAGA+TGG | + | chr3.3:90517514-90517533 | MS.gene75298:CDS | 35.0% | |
| CACTTCACTTCCATTACAAA+TGG | - | chr3.3:90518133-90518152 | None:intergenic | 35.0% | |
| CTTCAACAGTACGATACTAT+GGG | + | chr3.3:90518224-90518243 | MS.gene75298:CDS | 35.0% | |
| GAAGATGAAAGTGAAATGGA+GGG | + | chr3.3:90518612-90518631 | MS.gene75298:CDS | 35.0% | |
| GAAGATTCCAAATGATGTCT+AGG | - | chr3.3:90518731-90518750 | None:intergenic | 35.0% | |
| GACTGTTGCAAGATTATCAA+AGG | + | chr3.3:90518080-90518099 | MS.gene75298:CDS | 35.0% | |
| TCAACAACAATCCACAACAA+AGG | - | chr3.3:90517691-90517710 | None:intergenic | 35.0% | |
| TCAACTGAACCTGTTGAAAT+TGG | + | chr3.3:90518367-90518386 | MS.gene75298:intron | 35.0% | |
| TGAAGAAGGTAACAATCCAT+CGG | - | chr3.3:90517167-90517186 | None:intergenic | 35.0% | |
| TGAAGATGAAAGTGAAATGG+AGG | + | chr3.3:90518611-90518630 | MS.gene75298:CDS | 35.0% | |
| ! | TGTAATGGAAGTGAAGTGAT+TGG | + | chr3.3:90518135-90518154 | MS.gene75298:CDS | 35.0% |
| ! | TTTTCTTCCCAAGATCTTTG+TGG | + | chr3.3:90517224-90517243 | MS.gene75298:CDS | 35.0% |
| !! | CAATATTTTTGCAGGCGATT+TGG | + | chr3.3:90518051-90518070 | MS.gene75298:intron | 35.0% |
| !! | CTGACATTTTGAGAAGTAGT+GGG | + | chr3.3:90517737-90517756 | MS.gene75298:CDS | 35.0% |
| !! | TATTTTTGTTTCGCTCAACC+AGG | - | chr3.3:90518488-90518507 | None:intergenic | 35.0% |
| AACAATCCACAACAAAGGAG+GGG | - | chr3.3:90517686-90517705 | None:intergenic | 40.0% | |
| ACAACAATCCACAACAAAGG+AGG | - | chr3.3:90517688-90517707 | None:intergenic | 40.0% | |
| ATCTAACCAACACAAGCCAT+AGG | + | chr3.3:90517791-90517810 | MS.gene75298:CDS | 40.0% | |
| ATCTACATTTCCTGCAGTTG+TGG | - | chr3.3:90517083-90517102 | None:intergenic | 40.0% | |
| ATGGAAGTGAAGTGATTGGA+TGG | + | chr3.3:90518139-90518158 | MS.gene75298:CDS | 40.0% | |
| ATTGAAACTCATCGCCTCAA+TGG | + | chr3.3:90517847-90517866 | MS.gene75298:CDS | 40.0% | |
| CAACAATCCACAACAAAGGA+GGG | - | chr3.3:90517687-90517706 | None:intergenic | 40.0% | |
| CAACAGGTTCAGTTGAATAC+AGG | - | chr3.3:90518363-90518382 | None:intergenic | 40.0% | |
| CATGAGATTCAAGGACAAGT+TGG | - | chr3.3:90517359-90517378 | None:intergenic | 40.0% | |
| CCATAGTATCGTACTGTTGA+AGG | - | chr3.3:90518226-90518245 | None:intergenic | 40.0% | |
| CCTTCAACAGTACGATACTA+TGG | + | chr3.3:90518223-90518242 | MS.gene75298:CDS | 40.0% | |
| GTAGGAGAGGACTTAGATAA+CGG | - | chr3.3:90517124-90517143 | None:intergenic | 40.0% | |
| TAACATTTGTCCTTTGCGGT+CGG | + | chr3.3:90518424-90518443 | MS.gene75298:intron | 40.0% | |
| TACTATGGGATCCAAAGAAG+CGG | + | chr3.3:90518238-90518257 | MS.gene75298:CDS | 40.0% | |
| TAGGAGAGGACTTAGATAAC+GGG | - | chr3.3:90517123-90517142 | None:intergenic | 40.0% | |
| TGTTATTCACCTCTCACTCT+TGG | + | chr3.3:90517979-90517998 | MS.gene75298:intron | 40.0% | |
| TTCACAGCCTCATCAACTAA+TGG | - | chr3.3:90517466-90517485 | None:intergenic | 40.0% | |
| TTCTCATAAGAAGGCTCCTA+TGG | - | chr3.3:90517810-90517829 | None:intergenic | 40.0% | |
| ! | AACACCAAGCAAAAAAGCAC+TGG | - | chr3.3:90517206-90517225 | None:intergenic | 40.0% |
| ! | TGAGACACCATTAGTTGATG+AGG | + | chr3.3:90517456-90517475 | MS.gene75298:CDS | 40.0% |
| !! | GCTGACATTTTGAGAAGTAG+TGG | + | chr3.3:90517736-90517755 | MS.gene75298:CDS | 40.0% |
| !!! | TCTTCACATTTTCGAGTGAC+TGG | - | chr3.3:90517432-90517451 | None:intergenic | 40.0% |
| AACATTTGTCCTTTGCGGTC+GGG | + | chr3.3:90518425-90518444 | MS.gene75298:intron | 45.0% | |
| ACCTTCTTCATTCACCTCAC+TGG | + | chr3.3:90517177-90517196 | MS.gene75298:CDS | 45.0% | |
| ACTGCTCGAGAGTTATGGTT+TGG | + | chr3.3:90518646-90518665 | MS.gene75298:CDS | 45.0% | |
| AGCTGCAGACCAATTTCAAC+AGG | - | chr3.3:90518379-90518398 | None:intergenic | 45.0% | |
| AGGAGAGGACTTAGATAACG+GGG | - | chr3.3:90517122-90517141 | None:intergenic | 45.0% | |
| ATCGGATGGCATAGACTTCT+GGG | - | chr3.3:90517149-90517168 | None:intergenic | 45.0% | |
| ATGTTATGGCTATCCTCTCC+TGG | + | chr3.3:90518467-90518486 | MS.gene75298:intron | 45.0% | |
| CAAAACCTAAGGGTCAGCTT+TGG | + | chr3.3:90517260-90517279 | MS.gene75298:CDS | 45.0% | |
| CGGTTTCATGCTGAAATGCA+AGG | + | chr3.3:90518195-90518214 | MS.gene75298:CDS | 45.0% | |
| GAAGGTAACAATCCATCGGA+TGG | - | chr3.3:90517163-90517182 | None:intergenic | 45.0% | |
| GTCAGGGAAAATTTGTGGGT+TGG | + | chr3.3:90518300-90518319 | MS.gene75298:intron | 45.0% | |
| TCCAGTGAGGTGAATGAAGA+AGG | - | chr3.3:90517181-90517200 | None:intergenic | 45.0% | |
| TGATAGGTTCATGAGACGGT+CGG | - | chr3.3:90518266-90518285 | None:intergenic | 45.0% | |
| TGCCTGATAGGTTCATGAGA+CGG | - | chr3.3:90518270-90518289 | None:intergenic | 45.0% | |
| TTGCAAGGGCCCATTTGTAA+TGG | + | chr3.3:90518120-90518139 | MS.gene75298:CDS | 45.0% | |
| TTTCTCCAAAGCTGACCCTT+AGG | - | chr3.3:90517268-90517287 | None:intergenic | 45.0% | |
| ! | TTTGCAGGCGATTTGGAACA+TGG | + | chr3.3:90518058-90518077 | MS.gene75298:intron | 45.0% |
| !! | CAAGTTGATCCAAGAGTGAG+AGG | - | chr3.3:90517991-90518010 | None:intergenic | 45.0% |
| !! | TAAGGGTCAGCTTTGGAGAA+AGG | + | chr3.3:90517267-90517286 | MS.gene75298:CDS | 45.0% |
| !!! | GACTCCAGTGCTTTTTTGCT+TGG | + | chr3.3:90517199-90517218 | MS.gene75298:CDS | 45.0% |
| ACATTTGTCCTTTGCGGTCG+GGG | + | chr3.3:90518426-90518445 | MS.gene75298:intron | 50.0% | |
| AGAAGCGGCATTCTCTTGCA+AGG | + | chr3.3:90518105-90518124 | MS.gene75298:CDS | 50.0% | |
| CAGAAGTCTATGCCATCCGA+TGG | + | chr3.3:90517148-90517167 | MS.gene75298:CDS | 50.0% | |
| CATCGGATGGCATAGACTTC+TGG | - | chr3.3:90517150-90517169 | None:intergenic | 50.0% | |
| CTCTCGAGCAGTCGTTCATT+AGG | - | chr3.3:90518638-90518657 | None:intergenic | 50.0% | |
| GAACGACTGCTCGAGAGTTA+TGG | + | chr3.3:90518641-90518660 | MS.gene75298:CDS | 50.0% | |
| GAAGCGGCATTCTCTTGCAA+GGG | + | chr3.3:90518106-90518125 | MS.gene75298:CDS | 50.0% | |
| GACCGTCTCATGAACCTATC+AGG | + | chr3.3:90518265-90518284 | MS.gene75298:CDS | 50.0% | |
| TCGGATGGCATAGACTTCTG+GGG | - | chr3.3:90517148-90517167 | None:intergenic | 50.0% | |
| TTGTTTCGCTCAACCAGGAG+AGG | - | chr3.3:90518483-90518502 | None:intergenic | 50.0% | |
| ! | AAGGCTCCTATGGCTTGTGT+TGG | - | chr3.3:90517800-90517819 | None:intergenic | 50.0% |
| !! | AAAAGCACTGGAGTCCAGTG+AGG | - | chr3.3:90517194-90517213 | None:intergenic | 50.0% |
| !! | ACAAGTTGGTTGATGCGAGC+GGG | - | chr3.3:90517345-90517364 | None:intergenic | 50.0% |
| !! | ACTGATTCGAGCTGCCTGAT+AGG | - | chr3.3:90518282-90518301 | None:intergenic | 50.0% |
| !! | GACAAGTTGGTTGATGCGAG+CGG | - | chr3.3:90517346-90517365 | None:intergenic | 50.0% |
| CAGGCAGCTCGAATCAGTCA+GGG | + | chr3.3:90518284-90518303 | MS.gene75298:CDS | 55.0% | |
| CATTTGTCCTTTGCGGTCGG+GGG | + | chr3.3:90518427-90518446 | MS.gene75298:intron | 55.0% | |
| CGGATGGCATAGACTTCTGG+GGG | - | chr3.3:90517147-90517166 | None:intergenic | 55.0% | |
| GGATGGCATAGACTTCTGGG+GGG | - | chr3.3:90517146-90517165 | None:intergenic | 55.0% | |
| TCAGGCAGCTCGAATCAGTC+AGG | + | chr3.3:90518283-90518302 | MS.gene75298:CDS | 55.0% | |
| TGGTCTCCCCTCCTTTGTTG+TGG | + | chr3.3:90517677-90517696 | MS.gene75298:CDS | 55.0% | |
| TTTCCTGCAGTTGTGGCTCG+AGG | - | chr3.3:90517076-90517095 | None:intergenic | 55.0% | |
| AGAACATCCCCCGACCGCAA+AGG | - | chr3.3:90518437-90518456 | None:intergenic | 60.0% | |
| GCAGTTGTGGCTCGAGGAAC+CGG | - | chr3.3:90517070-90517089 | None:intergenic | 60.0% | |
| GTTCCTCGAGCCACAACTGC+AGG | + | chr3.3:90517070-90517089 | MS.gene75298:CDS | 60.0% | |
| ! | AGACTTCTGGGGGGTAGGAG+AGG | - | chr3.3:90517137-90517156 | None:intergenic | 60.0% |
| ! | GGCATAGACTTCTGGGGGGT+AGG | - | chr3.3:90517142-90517161 | None:intergenic | 60.0% |
| ! | TGGTTGATGCGAGCGGGATG+AGG | - | chr3.3:90517339-90517358 | None:intergenic | 60.0% |
| GGCTCGAGGAACCGGAGACA+AGG | - | chr3.3:90517062-90517081 | None:intergenic | 65.0% | |
| !! | GACGGTCGGTGCCGCTTCTT+TGG | - | chr3.3:90518252-90518271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90517040 | 90518761 | 90517040 | ID=MS.gene75298 |
| chr3.3 | mRNA | 90517040 | 90518761 | 90517040 | ID=MS.gene75298.t1;Parent=MS.gene75298 |
| chr3.3 | exon | 90517040 | 90517938 | 90517040 | ID=MS.gene75298.t1.exon1;Parent=MS.gene75298.t1 |
| chr3.3 | CDS | 90517040 | 90517938 | 90517040 | ID=cds.MS.gene75298.t1;Parent=MS.gene75298.t1 |
| chr3.3 | exon | 90518065 | 90518317 | 90518065 | ID=MS.gene75298.t1.exon2;Parent=MS.gene75298.t1 |
| chr3.3 | CDS | 90518065 | 90518317 | 90518065 | ID=cds.MS.gene75298.t1;Parent=MS.gene75298.t1 |
| chr3.3 | exon | 90518585 | 90518761 | 90518585 | ID=MS.gene75298.t1.exon3;Parent=MS.gene75298.t1 |
| chr3.3 | CDS | 90518585 | 90518761 | 90518585 | ID=cds.MS.gene75298.t1;Parent=MS.gene75298.t1 |
| Gene Sequence |
| Protein sequence |
