AlfalfaGEDB | MS.gene75855

M. sativa cultivar XinJiangDaYe / MS.gene75855

KEGG: K08150
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75855.t1	XP_003595539.1	98.3	580	10	0	1	580	1	580	0.00E+00	1107.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75855.t1	Q9C757	70.9	571	161	4	1	567	1	570	1.6e-233	810.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75855.t1	G7IGM5	98.3	580	10	0	1	580	1	580	0.0e+00	1107.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054556	MS.gene75855	0.820161	7.94E-53	-1.69E-46
MS.gene059609	MS.gene75855	0.804688	1.92E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003094	MS.gene75855	PPI
MS.gene003095	MS.gene75855	PPI
MS.gene02939	MS.gene75855	PPI
MS.gene02940	MS.gene75855	PPI
MS.gene055946	MS.gene75855	PPI
MS.gene75855	MS.gene04674	PPI
MS.gene75855	MS.gene018043	PPI
MS.gene75855	MS.gene047288	PPI
MS.gene75855	MS.gene04695	PPI
MS.gene75855	MS.gene048203	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75855.t1	MTR_2g049020	98.276	580	10	0	1	580	1	580	0.0	1165
MS.gene75855.t1	MTR_2g048720	73.997	573	143	4	1	571	1	569	0.0	837
MS.gene75855.t1	MTR_5g077580	66.179	615	117	6	1	571	1	568	0.0	794
MS.gene75855.t1	MTR_2g026160	58.201	567	227	5	2	562	3	565	0.0	655
MS.gene75855.t1	MTR_2g026140	54.321	567	234	7	2	562	3	550	0.0	579
MS.gene75855.t1	MTR_5g077590	57.513	386	125	5	182	567	64	410	4.55e-150	438
MS.gene75855.t1	MTR_3g084110	56.250	352	143	2	6	357	16	356	2.07e-134	401
MS.gene75855.t1	MTR_3g084110	50.758	132	57	2	450	580	372	496	4.70e-35	138
MS.gene75855.t1	MTR_7g005910	57.925	347	143	1	21	367	28	371	4.95e-132	395
MS.gene75855.t1	MTR_7g005910	56.154	130	52	1	450	579	376	500	2.78e-39	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75855.t1	AT1G30220	71.979	571	155	4	1	567	1	570	0.0	844
MS.gene75855.t1	AT4G16480	58.437	563	222	6	1	554	2	561	0.0	656
MS.gene75855.t1	AT4G16480	58.437	563	222	6	1	554	2	561	0.0	656
MS.gene75855.t1	AT4G16480	58.437	563	222	6	1	554	2	561	0.0	656
MS.gene75855.t1	AT2G35740	55.185	540	230	5	24	554	24	560	0.0	637
MS.gene75855.t1	AT2G43330	58.382	346	140	2	23	367	28	370	1.57e-124	376
MS.gene75855.t1	AT2G43330	60.484	124	48	1	450	572	376	499	5.44e-42	158
MS.gene75855.t1	AT3G18830	29.764	551	286	13	22	554	32	499	3.76e-60	209
MS.gene75855.t1	AT4G36670	36.390	349	203	6	23	356	14	358	1.11e-56	198
MS.gene75855.t1	AT4G36670	36.538	104	66	0	452	555	378	481	3.37e-14	75.9

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Find 113 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAACAGTAAGAAG+AGG	0.540201	2.1:+43005809	MS.gene75855:CDS
AAAACCAGCTAGTTGAACGA+TGG	0.712111	2.1:-43005906	None:intergenic
AAAGCAAGACGAAGAACATA+AGG	0.466895	2.1:-43002100	None:intergenic
AAAGCAGAGACATCAGCTTC+AGG	0.373152	2.1:-43002046	None:intergenic
AAAGGGACTTCCTATTGAAG+AGG	0.575338	2.1:+43006972	MS.gene75855:CDS
AACAACCAACGGGGCGATTC+TGG	0.183516	2.1:-43005522	None:intergenic
AACATCCACCTCCATGTTCC+TGG	0.382267	2.1:-43005447	None:intergenic
AACCTTTCTGAACAACCAAC+GGG	0.395585	2.1:-43005532	None:intergenic
AACGGTTGGCTAGCACTAAT+CGG	0.428488	2.1:+43006694	MS.gene75855:CDS
AACTACAACTCATTCTCCTA+TGG	0.511200	2.1:+43006099	MS.gene75855:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAAACAGTAAGAAG+AGG	+	chr2.1:43005809-43005828	MS.gene75855:CDS	30.0%
AAATAGATTACATGCAGTCA+TGG	-	chr2.1:43005575-43005594	None:intergenic	30.0%
AAATATTGTCTAACGGTCTA+CGG	-	chr2.1:43003815-43003834	None:intergenic	30.0%
AAATTATGTAGTGGCAAAGA+TGG	+	chr2.1:43003861-43003880	MS.gene75855:intron	30.0%
AACTATTCCATCAAAGCTAA+TGG	-	chr2.1:43002663-43002682	None:intergenic	30.0%
AACTATTGGCCAAAAATTCA+AGG	-	chr2.1:43003595-43003614	None:intergenic	30.0%
AATTATGTAGTGGCAAAGAT+GGG	+	chr2.1:43003862-43003881	MS.gene75855:intron	30.0%
AGCTGGTGATTAATTAATGA+TGG	+	chr2.1:43002323-43002342	MS.gene75855:intron	30.0%
ATTTCATCTTCAACATCTTG+TGG	-	chr2.1:43005710-43005729	None:intergenic	30.0%
CAACATATATCATGTACTCA+TGG	-	chr2.1:43003235-43003254	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	43002031	43007092	43002031	ID=MS.gene75855
chr2.1	mRNA	43002031	43007092	43002031	ID=MS.gene75855.t1;Parent=MS.gene75855
chr2.1	exon	43002031	43002163	43002031	ID=MS.gene75855.t1.exon1;Parent=MS.gene75855.t1
chr2.1	CDS	43002031	43002163	43002031	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1
chr2.1	exon	43002364	43002434	43002364	ID=MS.gene75855.t1.exon2;Parent=MS.gene75855.t1
chr2.1	CDS	43002364	43002434	43002364	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1
chr2.1	exon	43004513	43004848	43004513	ID=MS.gene75855.t1.exon3;Parent=MS.gene75855.t1
chr2.1	CDS	43004513	43004848	43004513	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1
chr2.1	exon	43005444	43005551	43005444	ID=MS.gene75855.t1.exon4;Parent=MS.gene75855.t1
chr2.1	CDS	43005444	43005551	43005444	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1
chr2.1	exon	43005662	43006258	43005662	ID=MS.gene75855.t1.exon5;Parent=MS.gene75855.t1
chr2.1	CDS	43005662	43006258	43005662	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1
chr2.1	exon	43006595	43007092	43006595	ID=MS.gene75855.t1.exon6;Parent=MS.gene75855.t1
chr2.1	CDS	43006595	43007092	43006595	ID=cds.MS.gene75855.t1;Parent=MS.gene75855.t1

Gene Sequence

>MS.gene75855

ATGGAAGGAGGAGTCCCTGAAGCTGATGTCTCTGCTTTCAGAGAATGTTTGTCTCTATCATGGAAAAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCTGGAATTGGCGGTTTTCTCTTTGGCTATGATACTGGTAAATAATATAAAAAAATAATTCATATCTATATAACTAGTTTTTTTTTTTTTTTTTAATATAATATCCATATAACTAACTAAAGCTTAAATAAACTATTTCTCTGTTTAACTTTTATTTATTTTAATAAATTCTCTTCTAAACAATAAAAAGTGTTAGAGCTGGTGATTAATTAATGATGGGTATTTGGGTATACGCAGGAGTCATATCTGGGGCTCTTTTGTATATAAGAGATGATTTCAAGGCTGTGGATAGACAAACTTGGCTGCAGGTAATGTTCATAAAAAGTTAGTTATATATTTCCTTAGGTCTCATTCATAAAAAAAAAATTGTTTCAGATTCGTTGAATATTTGATATATATTATAGACCAAATATATTTGGTATTCAATGAGTTTTTTCCCTATTAATGTGATTGGAGTTAGTATCTTTATCCATTTTAGTTGGACACACTATGTTTTTTCTTGTTTCTAGTCATTTTTTTTTCAACAATTTTAACCATTAGCTTTGATGGAATAGTTCGGATATATTATGGTTTAATAAAAGGTTCTAAGTTTGAGTCCAATCATGCTTCCTCCGATACAATATTATCCGACTCGAGAGATTATTATATGTTACACGCCAAAAATACCTTTATTGCATCTAAAAAATTATTTGACAATACCCCTTTATAACCATTTTACCTTGCCATTGATGCCAATAAAAAACTAACACAAGCACCTTGTGATAGTTTTCTCAATTTTAAGTTGTTTCTATAGGAAAACATAACCTGGTCAATTCAGTATATTATATACGGTCATGAAAAGCCAAGAAGAAAAAATATGGAAATAGTTTAACACATTTATCATTCATGATTTTCGTTATACCACTGATGTTTTTTATTACAATTTAAATTTAAATCACATACATAATTCAATAAGTTTGTGCAGATATAGTCCTTTATAAAAAAAGATTGATTAAACTTTTTCATCCACATCTTGGTTTATAAAATGTTATGTCAAAATCTCAGCATTATTTAGAGCACGTGTATAGTACATTAAAGTAAAACATAATGTATTGAAACGTCAAAACCATGAGTACATGATATATGTTGGCATTGGAAGTCACCTTGAAAATACAGACCAAAGAATAAAATAAAAAATAAAAAGAGTCTCCATGAAAATAATAATTTGTTAGGTTAATAAAATAAAATATTCTTATTTTAATGATAAATTCTTTTATTGTATTGATACACAAAAAACTTGTCCCCATAAACTTAACTCAAATGATAAGAACAATGCATAATATATGAATGATCCGGGGTTCGAATCTAGACACCACCAAAAAGAAACACAAAAAACTTATGATAGTTTGCTTTTGTAAGGTTGGTGAATTTTATTCTCACTTACTCAATCAAATAAGGGTGTGGTCCCTTCCCGAACTGTCTAACACCTTGAATTTTTGGCCAATAGTTGTGTGGTCATAGATAGTTCTGAATTCAATCCTTATTTCTCAAACCATTTTGTAGATTTTATTTTGTAGTTTTCAATCTCCTTTATATTTTTAATAATTACATAACATCAATTACATTTTTTTTCGTTCTTTTGTTTTTATTATTGAGGGTACAAGAGAAGCTTTAGCCTTCTAAATTCAGAACATCAAAAATCATAACCGTAGACCGTTAGACAATATTTATCCATTTTAAAATTGTTACCAACATAAATTATGTAGTGGCAAAGATGGGAACACAAATGCGACATAACATGAGCAAGAACATAATAACTTTTTTGATATGTTTTATTTTCAAAAGGGAGAAAAAATATGAAGTTTATGATAACTCACTTCTTCCTCTGCTGATCTTATGCAAAAGAAAAAATATACAAGTTTTGACACTATTTTATTTTATTTTGGTGTTAGTTTTGACACATTTATATTGGAGGAATAGGATTAATAAGGTCAAACAATAATCACTTCTAATTCTTTATTTTCCAATATTTATTTTTTTGGTGTATTTTTCCCTAATACATAATTAAATACAAATATTTATATATATACAAAAATTACACATAAGTCGAAGGCAAGCGAGCAACAAGCTGCGTCGCTAAGCCTTTTTAGATGGTAAAACTAACATGATTAAAATCATTCATGGACACGGAAGACATAATATATTGTTATACATGATCGTCAGGATTGCCCCCACTTATAAACAAATTGTCAAATATTTATATAGTGAAATGTGATTACATTTTAAATTCTGAGTTGAACTTATTAATTAAGTGAAAGGTAAATAAGATAAGGTTACATTTGTATGCTAATTTCATTATCACAACAACTATATTATAATGATTACTTAATTGATGTTGATAAATCAGGAAGCCATAGTGAGTACAGCACTTGCAGGAGCAATCATAGGTGCATCAGTTGGTGGATGGATCAACGATCGATTTGGAAGGAAAAAAGCAATAATTCTTGCAGATGCACTCTTTTTCATTGGCTCAGTTGTTATGGCTGCTGCAATCAATCCAGCTATTCTCATTGTTGGTAGAGTCTTTGTTGGTCTTGGTGTTGGAATGGCTTCAATGGCTTCCCCTTTATACATCTCAGAAGCTTCTCCAACTAGAGTTCGTGGAGCTCTTGTTAGTCTCAATGGATTTCTCATCACTGGTGGACAATTCCTTTCCTATGTTATCAACTTGGCATTCACAAATGTAAGAAAACTGCATCTAGATAGCTACTTCGATGAACATATTGTGACTAGTGAATTAGGGTTGCGATCGCCTCATGATTCGTATTCTTGGGAGAATCATTTGGGTTGAATCTAACTCAACTTTACAAAACCGATATGTATGTTGTCAGTGTCCTGGCTTATAAACACACTTGCACGCTATATTTTATATCAAATGTGAGACTCTTAACACACCTTTTACAATGAGAACTGCATATCTGAAGTGTGATTCGGATGGTCAAATTGAGGTGACCTAATAGAAGGTGACCAATTGATAAAAACATTTTCATGACATATTTTCGAATGTGAAACTCTTAATAGTGATGAACAAATGCAATCTACGTGGCCTTTATCGCAGTTGCATAAACCTTGATATTGCTGATTCTAACAAACTACGACTCATCATAATAGAAACTATTTAGATCCAAGGTGTGACTCATCATCTTAGGGAGATCCATCAGGCTTAGTATGAAACATACTTGGGACATAAGATTCTTTCAACTTTTAATTGCTTTGTCTAAAATGTTTATTTGTGTACAAACTATAATTGTGTAACTTGATTGATATTATTTGTTCAGGCACCAGGAACATGGAGGTGGATGTTAGGTGTTGCAGCAGTACCAGCTTTAACACAAATTGTATTAATGCTTATGCTCCCAGAATCGCCCCGTTGGTTGTTCAGAAAGGTTAATTCTCCTAACATCGTCCATGACTGCATGTAATCTATTTTCTTTTCTTTGCAAAATGTGTTGCTTTACTTAACTTTCATTTGGCTTATATGTTAAACGAAAAACAGGGAAAAGAAGAAGAAGCTAAAGAAATTTTGAGGAAGATATACCCTCCACAAGATGTTGAAGATGAAATCAATGCACTAAAAGAATCAGTTGAAATGGAAACCAAAGACGATTCGTCTTCAAACAAAGTCAGCATAATCAAACTTTTGAAAACCAAAACAGTAAGAAGAGGTTTATATGCAGGAGTCGGACTACAAATCTTCCAACAATTCGTCGGAATCAACACAGTAATGTACTACAGTCCAACCATCGTTCAACTAGCTGGTTTTGCATCAAACAAAACAGCACTTCTTCTGTCGCTTGTCACAGCTGGAATCAATGCATTTGGTTCGATTTTGAGCATATACTTTATTGATAAGACCGGAAGGAAGAAACTTTTGCTGTTTAGTTTGTCTGGTGTTATCGTCTCTCTTGTCGTCTTGACTGTTGTGTTCCATCAAACTACAACTCATTCTCCTATGGTTAGTGAAATTGAAACTTCTAAGTTCAATACTACTTGCCCTGATTATAGAACAGCTTTGGATGCTGCTCAATGGGATTGCATGAAATGTCTTAAGGCTTCTCCTGAATGTGGATTTTGTGCTTCTGCTGGTAATAAGGTAACATTTTTTTTTTTAATCTTTCCTTTCAAATAGAATACTAAGTGTAGTGTTTGTCCGCTTACCTCAGCTGGTAAGGACAATGCTTAATATATGCAAGGTCCGGGGTTCAAACCTCGGCCACCAACAAAAAAAAGAATACTAAGTGTTTTTTAACAGAATTATATAGCAAGTTTCTCAACTAACTATACTTAACAATTCTGTTACTTGCTTCTCAAGTAACAATTACAAAATTAACCATACTATTAGTTAACTAACCACCTAATAACCAATATTGAATTACTCTATAACAAATCTTTGTTCCAATGTCTAATAACAATACTAATTATTGTGCAGCTATTACCTGGGGCATGTCTAATATCCAATGACACAACAGAAGATCAATGTCAAAAAGAGCAAAGTCGACAATGGTACACAAGAGGATGTCCAAGCAAAAACGGTTGGCTAGCACTAATCGGTCTTTCACTATACATCCTATTCTTCTCACCAGGAATGGGAACAGTTCCATGGGTTGTAAACTCTGAAATATATCCATTAAGATACAGAGGAATATGTGGAGGAATAGCATCAACATCAAATTGGATTTCAAATCTCATTGTTGCACAATCTTTTCTATCATTGACTGATGCTATTGGAACTTCATACACATTCATGATATTCATTTTCATCACTGTTGCTGCCATTGTTTTTGTCATTGTTTTTGTGCCAGAAACAAAGGGACTTCCTATTGAAGAGGTTGAGAAAATGTTGGAAAGAAGAATTTTGAATTTTAAGTTTTGGCAGAGGAATTCTGACTCTGATCAAGTATTAACTCAAAAGAATGTGTCATTTTGA

Protein sequence

>MS.gene75855.t1

MEGGVPEADVSAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKAVDRQTWLQEAIVSTALAGAIIGASVGGWINDRFGRKKAIILADALFFIGSVVMAAAINPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLAFTNAPGTWRWMLGVAAVPALTQIVLMLMLPESPRWLFRKGKEEEAKEILRKIYPPQDVEDEINALKESVEMETKDDSSSNKVSIIKLLKTKTVRRGLYAGVGLQIFQQFVGINTVMYYSPTIVQLAGFASNKTALLLSLVTAGINAFGSILSIYFIDKTGRKKLLLFSLSGVIVSLVVLTVVFHQTTTHSPMVSEIETSKFNTTCPDYRTALDAAQWDCMKCLKASPECGFCASAGNKLLPGACLISNDTTEDQCQKEQSRQWYTRGCPSKNGWLALIGLSLYILFFSPGMGTVPWVVNSEIYPLRYRGICGGIASTSNWISNLIVAQSFLSLTDAIGTSYTFMIFIFITVAAIVFVIVFVPETKGLPIEEVEKMLERRILNFKFWQRNSDSDQVLTQKNVSF