Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76264.t1 | XP_013470231.1 | 97 | 601 | 9 | 2 | 1 | 599 | 1 | 594 | 0.00E+00 | 1127.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76264.t1 | F4I9E1 | 24.0 | 542 | 384 | 11 | 26 | 561 | 43 | 562 | 3.5e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76264.t1 | A0A072VQH4 | 97.0 | 601 | 9 | 2 | 1 | 599 | 1 | 594 | 0.0e+00 | 1127.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene76264 | 0.808268 | 3.37E-50 | -1.69E-46 |
| MS.gene051960 | MS.gene76264 | 0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene057001 | MS.gene76264 | 0.803379 | 3.58E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene76264 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene058629 | MS.gene76264 | 0.802256 | 6.12E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene76264 | 0.805784 | 1.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76264.t1 | MTR_1g111510 | 97.005 | 601 | 9 | 2 | 1 | 599 | 1 | 594 | 0.0 | 1175 |
| MS.gene76264.t1 | MTR_1g111540 | 93.489 | 599 | 34 | 1 | 1 | 599 | 1 | 594 | 0.0 | 1125 |
| MS.gene76264.t1 | MTR_1g111530 | 89.626 | 588 | 56 | 1 | 6 | 593 | 2 | 584 | 0.0 | 1063 |
| MS.gene76264.t1 | MTR_1g111550 | 74.530 | 585 | 141 | 3 | 16 | 598 | 15 | 593 | 0.0 | 885 |
| MS.gene76264.t1 | MTR_7g102880 | 62.833 | 600 | 200 | 6 | 9 | 592 | 12 | 604 | 0.0 | 731 |
| MS.gene76264.t1 | MTR_1g050550 | 59.725 | 581 | 225 | 2 | 10 | 581 | 8 | 588 | 0.0 | 717 |
| MS.gene76264.t1 | MTR_1g059080 | 57.679 | 586 | 232 | 4 | 10 | 591 | 8 | 581 | 0.0 | 690 |
| MS.gene76264.t1 | MTR_2g100400 | 34.151 | 571 | 324 | 5 | 20 | 571 | 1 | 538 | 3.05e-107 | 333 |
| MS.gene76264.t1 | MTR_7g029015 | 35.424 | 590 | 324 | 11 | 15 | 561 | 1 | 576 | 4.17e-106 | 332 |
| MS.gene76264.t1 | MTR_5g090570 | 33.153 | 555 | 330 | 8 | 26 | 571 | 11 | 533 | 2.61e-101 | 318 |
| MS.gene76264.t1 | MTR_3g099150 | 34.622 | 569 | 321 | 11 | 21 | 562 | 10 | 554 | 4.68e-99 | 313 |
| MS.gene76264.t1 | MTR_4g073690 | 34.982 | 546 | 320 | 9 | 26 | 562 | 15 | 534 | 7.57e-92 | 293 |
| MS.gene76264.t1 | MTR_4g116210 | 33.094 | 556 | 344 | 9 | 27 | 562 | 12 | 559 | 3.07e-89 | 287 |
| MS.gene76264.t1 | MTR_2g450710 | 31.295 | 556 | 347 | 7 | 27 | 562 | 13 | 553 | 2.16e-82 | 269 |
| MS.gene76264.t1 | MTR_5g022380 | 33.216 | 566 | 328 | 11 | 21 | 577 | 8 | 532 | 4.35e-82 | 268 |
| MS.gene76264.t1 | MTR_5g022380 | 32.613 | 463 | 262 | 11 | 124 | 577 | 1 | 422 | 9.02e-59 | 202 |
| MS.gene76264.t1 | MTR_4g073690 | 34.509 | 397 | 232 | 8 | 26 | 412 | 15 | 393 | 1.74e-58 | 201 |
| MS.gene76264.t1 | MTR_7g083660 | 26.132 | 574 | 382 | 16 | 26 | 575 | 7 | 562 | 2.00e-32 | 132 |
| MS.gene76264.t1 | MTR_2g104250 | 31.441 | 229 | 114 | 5 | 334 | 562 | 104 | 289 | 3.58e-30 | 121 |
| MS.gene76264.t1 | MTR_5g026350 | 25.347 | 576 | 390 | 15 | 26 | 574 | 7 | 569 | 1.19e-28 | 120 |
| MS.gene76264.t1 | MTR_5g095240 | 67.606 | 71 | 23 | 0 | 498 | 568 | 2 | 72 | 1.26e-26 | 103 |
| MS.gene76264.t1 | MTR_3g466040 | 24.237 | 557 | 369 | 12 | 15 | 562 | 1 | 513 | 2.91e-24 | 107 |
| MS.gene76264.t1 | MTR_3g466110 | 23.152 | 514 | 352 | 10 | 24 | 531 | 5 | 481 | 5.90e-22 | 100 |
| MS.gene76264.t1 | MTR_8g071920 | 23.671 | 583 | 395 | 16 | 26 | 576 | 48 | 612 | 1.31e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76264.t1 | AT2G39210 | 73.262 | 561 | 147 | 2 | 13 | 572 | 8 | 566 | 0.0 | 852 |
| MS.gene76264.t1 | AT2G28120 | 62.742 | 569 | 204 | 2 | 20 | 586 | 11 | 573 | 0.0 | 721 |
| MS.gene76264.t1 | AT1G74780 | 35.852 | 569 | 313 | 6 | 20 | 572 | 1 | 533 | 7.86e-111 | 342 |
| MS.gene76264.t1 | AT1G18940 | 36.429 | 560 | 297 | 9 | 18 | 562 | 1 | 516 | 4.77e-108 | 335 |
| MS.gene76264.t1 | AT5G50520 | 35.401 | 548 | 317 | 7 | 22 | 561 | 12 | 530 | 2.44e-101 | 318 |
| MS.gene76264.t1 | AT5G50630 | 35.401 | 548 | 317 | 7 | 22 | 561 | 12 | 530 | 2.44e-101 | 318 |
| MS.gene76264.t1 | AT5G14120 | 34.495 | 574 | 348 | 9 | 20 | 570 | 10 | 578 | 4.29e-100 | 316 |
| MS.gene76264.t1 | AT2G34355 | 33.513 | 558 | 318 | 9 | 23 | 568 | 4 | 520 | 3.42e-97 | 306 |
| MS.gene76264.t1 | AT3G01930 | 32.823 | 588 | 342 | 9 | 22 | 571 | 12 | 584 | 1.33e-96 | 307 |
| MS.gene76264.t1 | AT2G34350 | 32.862 | 566 | 319 | 8 | 20 | 568 | 1 | 522 | 1.64e-96 | 305 |
| MS.gene76264.t1 | AT2G34350 | 32.862 | 566 | 319 | 8 | 20 | 568 | 1 | 522 | 1.64e-96 | 305 |
| MS.gene76264.t1 | AT4G34950 | 32.971 | 552 | 337 | 7 | 26 | 561 | 16 | 550 | 1.26e-92 | 296 |
| MS.gene76264.t1 | AT2G16660 | 34.259 | 540 | 327 | 7 | 26 | 561 | 14 | 529 | 2.88e-89 | 286 |
| MS.gene76264.t1 | AT1G80530 | 30.853 | 551 | 346 | 10 | 27 | 562 | 14 | 544 | 2.51e-74 | 248 |
| MS.gene76264.t1 | AT3G01930 | 31.524 | 479 | 289 | 9 | 124 | 571 | 1 | 471 | 2.69e-67 | 227 |
| MS.gene76264.t1 | AT2G34355 | 31.707 | 410 | 235 | 8 | 163 | 568 | 2 | 370 | 3.59e-60 | 205 |
| MS.gene76264.t1 | AT3G01930 | 31.925 | 426 | 240 | 7 | 22 | 409 | 12 | 425 | 3.97e-59 | 204 |
| MS.gene76264.t1 | AT2G16660 | 33.504 | 391 | 241 | 7 | 26 | 412 | 14 | 389 | 8.04e-55 | 191 |
| MS.gene76264.t1 | AT3G01630 | 25.673 | 557 | 359 | 15 | 26 | 562 | 23 | 544 | 1.10e-31 | 129 |
| MS.gene76264.t1 | AT3G01630 | 25.673 | 557 | 359 | 15 | 26 | 562 | 41 | 562 | 1.20e-31 | 130 |
| MS.gene76264.t1 | AT4G19450 | 25.088 | 570 | 376 | 14 | 26 | 562 | 7 | 558 | 1.59e-31 | 129 |
| MS.gene76264.t1 | AT5G45275 | 26.042 | 576 | 376 | 14 | 26 | 572 | 7 | 561 | 2.40e-30 | 126 |
| MS.gene76264.t1 | AT1G31470 | 23.468 | 571 | 388 | 12 | 26 | 583 | 43 | 577 | 4.96e-29 | 122 |
| MS.gene76264.t1 | AT4G19450 | 25.485 | 412 | 264 | 10 | 26 | 405 | 7 | 407 | 9.51e-24 | 104 |
Find 102 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACCTTTGTAAAACTTTC+TGG | 0.108023 | 1.1:-78685986 | None:intergenic |
| TATGCAACTTTGTATAATTT+TGG | 0.150653 | 1.1:+78685742 | MS.gene76264:CDS |
| AACACATCTTCCCACCATTT+TGG | 0.178261 | 1.1:-78685286 | None:intergenic |
| TGCTGTTGTTTCACTTATTT+TGG | 0.195650 | 1.1:+78685954 | MS.gene76264:CDS |
| GGAATCTCGCGGCGCGGTTT+TGG | 0.197076 | 1.1:+78684769 | MS.gene76264:CDS |
| TATATTTCACTTGGTCTTGC+TGG | 0.241800 | 1.1:+78684992 | MS.gene76264:CDS |
| TTGTGTCTTTAGTAAGTATT+TGG | 0.250564 | 1.1:+78685482 | MS.gene76264:CDS |
| TACGTAGCTTCAGTAATAAT+TGG | 0.273011 | 1.1:+78685652 | MS.gene76264:CDS |
| GGTGCTATTCTCAATTTCTT+TGG | 0.281836 | 1.1:+78684605 | MS.gene76264:CDS |
| AGCAACGTTGGTGTCCTTTC+AGG | 0.282717 | 1.1:+78684539 | MS.gene76264:CDS |
| TCTTTGGTTACTTCATGATT+TGG | 0.300114 | 1.1:+78684621 | MS.gene76264:CDS |
| GTGACATATACAAGAGATAT+AGG | 0.328395 | 1.1:+78686004 | MS.gene76264:CDS |
| AAAGGCTATGTTGGTCTTAG+TGG | 0.334364 | 1.1:+78684800 | MS.gene76264:CDS |
| TTCCATTGGTGTTCATGGTT+GGG | 0.335726 | 1.1:+78684331 | MS.gene76264:CDS |
| ATGTGTCTTTACATTTGTAT+AGG | 0.337463 | 1.1:+78684686 | MS.gene76264:CDS |
| AAAACCGCGCCGCGAGATTC+CGG | 0.338355 | 1.1:-78684767 | None:intergenic |
| GTAAGTATTTGGAATTATCT+AGG | 0.353475 | 1.1:+78685493 | MS.gene76264:CDS |
| GGAAATTCCATTGGTGTTCA+TGG | 0.360435 | 1.1:+78684326 | MS.gene76264:CDS |
| TCGACAAGTTAATGAACTTA+AGG | 0.361561 | 1.1:+78684952 | MS.gene76264:CDS |
| ACCACCGTCCGGTGATGAAT+TGG | 0.362421 | 1.1:-78684376 | None:intergenic |
| TTGACAGCAATTGATAATCT+TGG | 0.365572 | 1.1:+78685412 | MS.gene76264:CDS |
| AAACCGCGCCGCGAGATTCC+GGG | 0.368444 | 1.1:-78684766 | None:intergenic |
| CTTGGAAAGCAAAGAATAGA+AGG | 0.371411 | 1.1:+78685856 | MS.gene76264:CDS |
| AAATAGCAAGACCACAAGTT+TGG | 0.379762 | 1.1:+78684660 | MS.gene76264:CDS |
| CTATTTGTGGCATGTATTTG+TGG | 0.387438 | 1.1:+78685376 | MS.gene76264:CDS |
| ATATAGGGAAGAAGCAGAAA+TGG | 0.393446 | 1.1:+78686020 | MS.gene76264:CDS |
| TGGTCTTGCTGGATTCTTGT+TGG | 0.395905 | 1.1:+78685003 | MS.gene76264:CDS |
| TTCCTAATCATGGCAGCTGC+TGG | 0.403170 | 1.1:+78684416 | MS.gene76264:CDS |
| TAAGGAGGTTTAGTGTGCTT+TGG | 0.411770 | 1.1:-78684496 | None:intergenic |
| GTGGCATGTATTTGTGGTGT+TGG | 0.412454 | 1.1:+78685382 | MS.gene76264:CDS |
| GTATAATCATCACCTCTTGC+TGG | 0.416041 | 1.1:-78685316 | None:intergenic |
| TCCATTGGTGTTCATGGTTG+GGG | 0.418602 | 1.1:+78684332 | MS.gene76264:CDS |
| AGTTCATTAACTTGTCGAAC+AGG | 0.419859 | 1.1:-78684947 | None:intergenic |
| AGAGTTAAAGTAAGCATAAG+AGG | 0.426460 | 1.1:-78685574 | None:intergenic |
| ATTGATAATCTTGGTCAGAT+AGG | 0.426987 | 1.1:+78685421 | MS.gene76264:CDS |
| AGACATGTTGATACTATTTG+TGG | 0.431839 | 1.1:+78685363 | MS.gene76264:CDS |
| CTCCAGCAGCTGCCATGATT+AGG | 0.433448 | 1.1:-78684418 | None:intergenic |
| TCATTGAAGAGAACAAGATT+TGG | 0.435135 | 1.1:+78685128 | MS.gene76264:CDS |
| CAAAGAAGCAAAGAAGCAAT+TGG | 0.437960 | 1.1:+78685828 | MS.gene76264:CDS |
| AACTCTCTTTGTCTCATGTG+TGG | 0.452502 | 1.1:+78685591 | MS.gene76264:CDS |
| TATGATCATAATTCAGAAGA+AGG | 0.453739 | 1.1:+78685027 | MS.gene76264:CDS |
| ACTCTCTTTGTCTCATGTGT+GGG | 0.462025 | 1.1:+78685592 | MS.gene76264:CDS |
| GGAATTCTTAAAGGCTATGT+TGG | 0.464341 | 1.1:+78684791 | MS.gene76264:CDS |
| CCTTCTGTTACTATTTGCAC+TGG | 0.477008 | 1.1:-78685184 | None:intergenic |
| TGACATATACAAGAGATATA+GGG | 0.477639 | 1.1:+78686005 | MS.gene76264:CDS |
| ATTCCATTGGTGTTCATGGT+TGG | 0.479502 | 1.1:+78684330 | MS.gene76264:CDS |
| CAACGAACTTTATCCACCTT+GGG | 0.485090 | 1.1:+78684568 | MS.gene76264:CDS |
| AACACAAGTAACAAGTGAAC+CGG | 0.486587 | 1.1:-78684735 | None:intergenic |
| GCTGGAGCCACCTACATGTT+CGG | 0.494279 | 1.1:+78684434 | MS.gene76264:CDS |
| GGAAGTGTAGCAAGTCCACT+TGG | 0.498928 | 1.1:+78685763 | MS.gene76264:CDS |
| TACTTGTGTTAAGAATTTCC+CGG | 0.506545 | 1.1:+78684748 | MS.gene76264:CDS |
| GCATGTATTTGTGGTGTTGG+TGG | 0.506795 | 1.1:+78685385 | MS.gene76264:CDS |
| ACAGAGGAAGATGAGAAAGT+TGG | 0.510776 | 1.1:+78686066 | MS.gene76264:CDS |
| TCAACGAACTTTATCCACCT+TGG | 0.511866 | 1.1:+78684567 | MS.gene76264:CDS |
| AAAGCAAAGGAAATAGCAGC+AGG | 0.514488 | 1.1:-78684899 | None:intergenic |
| TAGGGAAGAAGCAGAAATGG+TGG | 0.514926 | 1.1:+78686023 | MS.gene76264:CDS |
| AATTTCTTGTATATTTCACT+TGG | 0.520204 | 1.1:+78684983 | MS.gene76264:CDS |
| GTTACTATTTGCACTGGTGA+AGG | 0.536206 | 1.1:-78685178 | None:intergenic |
| AAGAAGCAATTGGAAGCACT+TGG | 0.537705 | 1.1:+78685838 | MS.gene76264:CDS |
| AACAGGTTTCATATATCGAA+TGG | 0.538846 | 1.1:-78684930 | None:intergenic |
| GAAGCTACGTAGAGACCCTC+TGG | 0.564193 | 1.1:-78685640 | None:intergenic |
| AAAGCAAAGAATAGAAGGGC+AGG | 0.570654 | 1.1:+78685861 | MS.gene76264:CDS |
| GTTCGTTGATTAGTCCTGAA+AGG | 0.572777 | 1.1:-78684553 | None:intergenic |
| AGCAGCTGCCATGATTAGGA+AGG | 0.576123 | 1.1:-78684414 | None:intergenic |
| GGGCAGGAATTGAATTGTGT+TGG | 0.581328 | 1.1:+78685877 | MS.gene76264:CDS |
| TCAATGAAAACAACGGCAAG+TGG | 0.581784 | 1.1:-78685112 | None:intergenic |
| TAATCATCACCTCTTGCTGG+TGG | 0.582138 | 1.1:-78685313 | None:intergenic |
| AGACACATTTGCCAAACTTG+TGG | 0.585563 | 1.1:-78684671 | None:intergenic |
| AAGAATTTCCCGGAATCTCG+CGG | 0.587948 | 1.1:+78684758 | MS.gene76264:CDS |
| AAAGACTTTGGTAGCAACGT+TGG | 0.591191 | 1.1:+78684527 | MS.gene76264:CDS |
| AAAGTAAGCATAAGAGGACG+AGG | 0.591288 | 1.1:-78685568 | None:intergenic |
| TCCCCAACCATGAACACCAA+TGG | 0.591569 | 1.1:-78684333 | None:intergenic |
| GTATGGTTTAAGTGCTGCTG+TGG | 0.591609 | 1.1:+78685069 | MS.gene76264:CDS |
| GTGCTTAATGTGAAGATCGC+TGG | 0.592619 | 1.1:+78685793 | MS.gene76264:CDS |
| GGAAGAAGCAGAAATGGTGG+AGG | 0.593458 | 1.1:+78686026 | MS.gene76264:CDS |
| AGCTGCCATGATTAGGAAGG+AGG | 0.604024 | 1.1:-78684411 | None:intergenic |
| GTGTTCAATCCACCAGCAAG+AGG | 0.615879 | 1.1:+78685304 | MS.gene76264:CDS |
| GTTCTCTTCAATGAAAACAA+CGG | 0.618801 | 1.1:-78685119 | None:intergenic |
| GCACATCAAATGCTATCAGA+AGG | 0.619230 | 1.1:-78685618 | None:intergenic |
| AATGGTTCGAAGAAAAGCAA+AGG | 0.619783 | 1.1:-78684912 | None:intergenic |
| CATGTTCGGTCTATACTCCC+CGG | 0.621456 | 1.1:+78684448 | MS.gene76264:CDS |
| GGAGTATAGACCGAACATGT+AGG | 0.629042 | 1.1:-78684444 | None:intergenic |
| GAAGTGTAGCAAGTCCACTT+GGG | 0.630096 | 1.1:+78685764 | MS.gene76264:CDS |
| AAAGAACAAGGAAAAGACAG+AGG | 0.631564 | 1.1:+78686050 | MS.gene76264:CDS |
| CCAGTGCAAATAGTAACAGA+AGG | 0.634763 | 1.1:+78685184 | MS.gene76264:CDS |
| GATAGCATTTGATGTGCCAG+AGG | 0.635342 | 1.1:+78685624 | MS.gene76264:CDS |
| ATGGCAGTAGGAAATTCCAT+TGG | 0.637966 | 1.1:+78684317 | MS.gene76264:CDS |
| CCTATTGTCAAAACTACCCA+AGG | 0.644366 | 1.1:-78684584 | None:intergenic |
| ATAGCATTTGATGTGCCAGA+GGG | 0.644810 | 1.1:+78685625 | MS.gene76264:CDS |
| AATGGTGGAGGTAAAGAACA+AGG | 0.645454 | 1.1:+78686038 | MS.gene76264:CDS |
| TTGGAAAGCAAAGAATAGAA+GGG | 0.645826 | 1.1:+78685857 | MS.gene76264:CDS |
| CTCACCGTCCAATTCATCAC+CGG | 0.647057 | 1.1:+78684368 | MS.gene76264:CDS |
| TTAAGCACATATAACCCAAG+TGG | 0.655955 | 1.1:-78685778 | None:intergenic |
| TATTTACTATGATGACACAA+AGG | 0.659190 | 1.1:+78684850 | MS.gene76264:CDS |
| CAGCAGAGGTTGTTGAACCG+AGG | 0.660154 | 1.1:-78685237 | None:intergenic |
| ATTGTCAAAACTACCCAAGG+TGG | 0.665582 | 1.1:-78684581 | None:intergenic |
| TTTCCCGGAATCTCGCGGCG+CGG | 0.666698 | 1.1:+78684763 | MS.gene76264:CDS |
| GACTGAAACTGAAACAGCAG+AGG | 0.678973 | 1.1:-78685251 | None:intergenic |
| CCGTCCGGTGATGAATTGGA+CGG | 0.681338 | 1.1:-78684372 | None:intergenic |
| CCGTCCAATTCATCACCGGA+CGG | 0.687213 | 1.1:+78684372 | MS.gene76264:CDS |
| GTATAGACCGAACATGTAGG+TGG | 0.689369 | 1.1:-78684441 | None:intergenic |
| TCCAATTCATCACCGGACGG+TGG | 0.690622 | 1.1:+78684375 | MS.gene76264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTTGTATATTTCACT+TGG | + | chr1.1:78684983-78685002 | MS.gene76264:CDS | 20.0% |
| !!! | GTAATAATTGGATTTTGTTT+TGG | + | chr1.1:78685664-78685683 | MS.gene76264:CDS | 20.0% |
| !!! | TATGCAACTTTGTATAATTT+TGG | + | chr1.1:78685742-78685761 | MS.gene76264:CDS | 20.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | + | chr1.1:78685276-78685295 | MS.gene76264:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | + | chr1.1:78684686-78684705 | MS.gene76264:CDS | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | - | chr1.1:78685700-78685719 | None:intergenic | 25.0% |
| ! | TATGATCATAATTCAGAAGA+AGG | + | chr1.1:78685027-78685046 | MS.gene76264:CDS | 25.0% |
| ! | TATTTACTATGATGACACAA+AGG | + | chr1.1:78684850-78684869 | MS.gene76264:CDS | 25.0% |
| ! | TGACATATACAAGAGATATA+GGG | + | chr1.1:78686005-78686024 | MS.gene76264:CDS | 25.0% |
| ! | TTGTGTCTTTAGTAAGTATT+TGG | + | chr1.1:78685482-78685501 | MS.gene76264:CDS | 25.0% |
| !! | ACCATTTTGGATCTTTTTTT+GGG | - | chr1.1:78685276-78685295 | None:intergenic | 25.0% |
| !! | CAAAGTCTTTGAAAAAACTA+AGG | - | chr1.1:78684517-78684536 | None:intergenic | 25.0% |
| !! | CCATTATATCAGAACTTTTT+GGG | + | chr1.1:78685710-78685729 | MS.gene76264:CDS | 25.0% |
| !! | GTAAGTATTTGGAATTATCT+AGG | + | chr1.1:78685493-78685512 | MS.gene76264:CDS | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+AGG | + | chr1.1:78684869-78684888 | MS.gene76264:CDS | 25.0% |
| !!! | CTTAGTTTTTTCAAAGACTT+TGG | + | chr1.1:78684515-78684534 | MS.gene76264:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATAGGT+TGG | + | chr1.1:78684873-78684892 | MS.gene76264:CDS | 25.0% |
| AACAGGTTTCATATATCGAA+TGG | - | chr1.1:78684933-78684952 | None:intergenic | 30.0% | |
| AGACATGTTGATACTATTTG+TGG | + | chr1.1:78685363-78685382 | MS.gene76264:CDS | 30.0% | |
| AGAGTTAAAGTAAGCATAAG+AGG | - | chr1.1:78685577-78685596 | None:intergenic | 30.0% | |
| CAAAAAAAGATCCAAAATGG+TGG | + | chr1.1:78685275-78685294 | MS.gene76264:CDS | 30.0% | |
| GTGACATATACAAGAGATAT+AGG | + | chr1.1:78686004-78686023 | MS.gene76264:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | - | chr1.1:78685122-78685141 | None:intergenic | 30.0% | |
| TACGTAGCTTCAGTAATAAT+TGG | + | chr1.1:78685652-78685671 | MS.gene76264:CDS | 30.0% | |
| TACTTGTGTTAAGAATTTCC+CGG | + | chr1.1:78684748-78684767 | MS.gene76264:CDS | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | + | chr1.1:78685128-78685147 | MS.gene76264:CDS | 30.0% | |
| TCCCAAAAAAAGATCCAAAA+TGG | + | chr1.1:78685272-78685291 | MS.gene76264:CDS | 30.0% | |
| TCGACAAGTTAATGAACTTA+AGG | + | chr1.1:78684952-78684971 | MS.gene76264:CDS | 30.0% | |
| TCTTTGGTTACTTCATGATT+TGG | + | chr1.1:78684621-78684640 | MS.gene76264:CDS | 30.0% | |
| TTGGAAAGCAAAGAATAGAA+GGG | + | chr1.1:78685857-78685876 | MS.gene76264:CDS | 30.0% | |
| ! | AGTCTTTGAAAAAACTAAGG+AGG | - | chr1.1:78684514-78684533 | None:intergenic | 30.0% |
| ! | ATTACAGCTGCAACATTTTT+CGG | + | chr1.1:78685931-78685950 | MS.gene76264:CDS | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | + | chr1.1:78685421-78685440 | MS.gene76264:CDS | 30.0% |
| ! | CACCATTTTGGATCTTTTTT+TGG | - | chr1.1:78685277-78685296 | None:intergenic | 30.0% |
| ! | CCCAAAAAGTTCTGATATAA+TGG | - | chr1.1:78685713-78685732 | None:intergenic | 30.0% |
| ! | GCCATTATATCAGAACTTTT+TGG | + | chr1.1:78685709-78685728 | MS.gene76264:CDS | 30.0% |
| ! | TTGACAGCAATTGATAATCT+TGG | + | chr1.1:78685412-78685431 | MS.gene76264:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | - | chr1.1:78685463-78685482 | None:intergenic | 30.0% |
| !!! | TGCTGTTGTTTCACTTATTT+TGG | + | chr1.1:78685954-78685973 | MS.gene76264:CDS | 30.0% |
| !!! | TGTTGTTTCACTTATTTTGG+TGG | + | chr1.1:78685957-78685976 | MS.gene76264:CDS | 30.0% |
| !!! | TTGTGGTCTTGCTATTTTTT+TGG | - | chr1.1:78684657-78684676 | None:intergenic | 30.0% |
| AAAGAACAAGGAAAAGACAG+AGG | + | chr1.1:78686050-78686069 | MS.gene76264:CDS | 35.0% | |
| AAATAGCAAGACCACAAGTT+TGG | + | chr1.1:78684660-78684679 | MS.gene76264:CDS | 35.0% | |
| AACACAAGTAACAAGTGAAC+CGG | - | chr1.1:78684738-78684757 | None:intergenic | 35.0% | |
| AATGGTTCGAAGAAAAGCAA+AGG | - | chr1.1:78684915-78684934 | None:intergenic | 35.0% | |
| ATATAGGGAAGAAGCAGAAA+TGG | + | chr1.1:78686020-78686039 | MS.gene76264:CDS | 35.0% | |
| CAAAGAAGCAAAGAAGCAAT+TGG | + | chr1.1:78685828-78685847 | MS.gene76264:CDS | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | + | chr1.1:78685376-78685395 | MS.gene76264:CDS | 35.0% | |
| CTTGGAAAGCAAAGAATAGA+AGG | + | chr1.1:78685856-78685875 | MS.gene76264:CDS | 35.0% | |
| GAAAAAGCAAACAACAACCT+CGG | + | chr1.1:78685220-78685239 | MS.gene76264:CDS | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | + | chr1.1:78684791-78684810 | MS.gene76264:CDS | 35.0% | |
| GTCACCTTTGTAAAACTTTC+TGG | - | chr1.1:78685989-78686008 | None:intergenic | 35.0% | |
| TTAAGCACATATAACCCAAG+TGG | - | chr1.1:78685781-78685800 | None:intergenic | 35.0% | |
| ! | AGGACCAGAAAGTTTTACAA+AGG | + | chr1.1:78685982-78686001 | MS.gene76264:CDS | 35.0% |
| ! | AGTTTTTCACAGAGTGAGTA+TGG | + | chr1.1:78685052-78685071 | MS.gene76264:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTTGCTT+TGG | + | chr1.1:78685150-78685169 | MS.gene76264:CDS | 35.0% |
| !! | AGTTCATTAACTTGTCGAAC+AGG | - | chr1.1:78684950-78684969 | None:intergenic | 35.0% |
| !! | GGTGCTATTCTCAATTTCTT+TGG | + | chr1.1:78684605-78684624 | MS.gene76264:CDS | 35.0% |
| !! | TATATTTCACTTGGTCTTGC+TGG | + | chr1.1:78684992-78685011 | MS.gene76264:CDS | 35.0% |
| !!! | AAGTGTTGTTTTTATGTCCG+GGG | - | chr1.1:78684468-78684487 | None:intergenic | 35.0% |
| !!! | CAAGTGTTGTTTTTATGTCC+GGG | - | chr1.1:78684469-78684488 | None:intergenic | 35.0% |
| !!! | CCAAGTGTTGTTTTTATGTC+CGG | - | chr1.1:78684470-78684489 | None:intergenic | 35.0% |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | + | chr1.1:78685674-78685693 | MS.gene76264:CDS | 35.0% |
| !!! | TTTCACTTATTTTGGTGGCT+AGG | + | chr1.1:78685962-78685981 | MS.gene76264:CDS | 35.0% |
| AAAGCAAAGAATAGAAGGGC+AGG | + | chr1.1:78685861-78685880 | MS.gene76264:CDS | 40.0% | |
| AAAGCAAAGGAAATAGCAGC+AGG | - | chr1.1:78684902-78684921 | None:intergenic | 40.0% | |
| AAAGTAAGCATAAGAGGACG+AGG | - | chr1.1:78685571-78685590 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | + | chr1.1:78685591-78685610 | MS.gene76264:CDS | 40.0% | |
| ACAGAGGAAGATGAGAAAGT+TGG | + | chr1.1:78686066-78686085 | MS.gene76264:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | + | chr1.1:78685592-78685611 | MS.gene76264:CDS | 40.0% | |
| AGACACATTTGCCAAACTTG+TGG | - | chr1.1:78684674-78684693 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCAGA+GGG | + | chr1.1:78685625-78685644 | MS.gene76264:CDS | 40.0% | |
| ATGGCAGTAGGAAATTCCAT+TGG | + | chr1.1:78684317-78684336 | MS.gene76264:CDS | 40.0% | |
| ATTGTCAAAACTACCCAAGG+TGG | - | chr1.1:78684584-78684603 | None:intergenic | 40.0% | |
| CAACGAACTTTATCCACCTT+GGG | + | chr1.1:78684568-78684587 | MS.gene76264:CDS | 40.0% | |
| CCAGTGCAAATAGTAACAGA+AGG | + | chr1.1:78685184-78685203 | MS.gene76264:CDS | 40.0% | |
| CCGGACATAAAAACAACACT+TGG | + | chr1.1:78684467-78684486 | MS.gene76264:CDS | 40.0% | |
| CCTATTGTCAAAACTACCCA+AGG | - | chr1.1:78684587-78684606 | None:intergenic | 40.0% | |
| CCTTCTGTTACTATTTGCAC+TGG | - | chr1.1:78685187-78685206 | None:intergenic | 40.0% | |
| GCACATCAAATGCTATCAGA+AGG | - | chr1.1:78685621-78685640 | None:intergenic | 40.0% | |
| GTATAATCATCACCTCTTGC+TGG | - | chr1.1:78685319-78685338 | None:intergenic | 40.0% | |
| TAAGGAGGTTTAGTGTGCTT+TGG | - | chr1.1:78684499-78684518 | None:intergenic | 40.0% | |
| TCAACGAACTTTATCCACCT+TGG | + | chr1.1:78684567-78684586 | MS.gene76264:CDS | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | - | chr1.1:78685115-78685134 | None:intergenic | 40.0% | |
| ! | AAAGACTTTGGTAGCAACGT+TGG | + | chr1.1:78684527-78684546 | MS.gene76264:CDS | 40.0% |
| ! | AACACATCTTCCCACCATTT+TGG | - | chr1.1:78685289-78685308 | None:intergenic | 40.0% |
| ! | AATGGTGGAGGTAAAGAACA+AGG | + | chr1.1:78686038-78686057 | MS.gene76264:CDS | 40.0% |
| ! | ATTCCATTGGTGTTCATGGT+TGG | + | chr1.1:78684330-78684349 | MS.gene76264:CDS | 40.0% |
| ! | GGAAATTCCATTGGTGTTCA+TGG | + | chr1.1:78684326-78684345 | MS.gene76264:CDS | 40.0% |
| ! | GTTACTATTTGCACTGGTGA+AGG | - | chr1.1:78685181-78685200 | None:intergenic | 40.0% |
| ! | GTTCGTTGATTAGTCCTGAA+AGG | - | chr1.1:78684556-78684575 | None:intergenic | 40.0% |
| ! | TCTCAGTCTTTTGCAAACAC+CGG | + | chr1.1:78684716-78684735 | MS.gene76264:CDS | 40.0% |
| ! | TTCCATTGGTGTTCATGGTT+GGG | + | chr1.1:78684331-78684350 | MS.gene76264:CDS | 40.0% |
| ! | TTTTGCCTCCTTCCTAATCA+TGG | + | chr1.1:78684406-78684425 | MS.gene76264:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | + | chr1.1:78684800-78684819 | MS.gene76264:CDS | 40.0% |
| !! | AAGAAGCAATTGGAAGCACT+TGG | + | chr1.1:78685838-78685857 | MS.gene76264:CDS | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | + | chr1.1:78685508-78685527 | MS.gene76264:CDS | 40.0% |
| !!! | CCTTGGGTAGTTTTGACAAT+AGG | + | chr1.1:78684584-78684603 | MS.gene76264:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | + | chr1.1:78684782-78684801 | MS.gene76264:CDS | 40.0% |
| AAAAATGACGAACCACCGTC+CGG | - | chr1.1:78684390-78684409 | None:intergenic | 45.0% | |
| AAGAATTTCCCGGAATCTCG+CGG | + | chr1.1:78684758-78684777 | MS.gene76264:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | + | chr1.1:78685764-78685783 | MS.gene76264:CDS | 45.0% | |
| GACTGAAACTGAAACAGCAG+AGG | - | chr1.1:78685254-78685273 | None:intergenic | 45.0% | |
| GATAGCATTTGATGTGCCAG+AGG | + | chr1.1:78685624-78685643 | MS.gene76264:CDS | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | - | chr1.1:78684447-78684466 | None:intergenic | 45.0% | |
| GGGCAGGAATTGAATTGTGT+TGG | + | chr1.1:78685877-78685896 | MS.gene76264:CDS | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | - | chr1.1:78684444-78684463 | None:intergenic | 45.0% | |
| GTGCTTAATGTGAAGATCGC+TGG | + | chr1.1:78685793-78685812 | MS.gene76264:CDS | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | + | chr1.1:78685382-78685401 | MS.gene76264:CDS | 45.0% | |
| TAATCATCACCTCTTGCTGG+TGG | - | chr1.1:78685316-78685335 | None:intergenic | 45.0% | |
| TAGGGAAGAAGCAGAAATGG+TGG | + | chr1.1:78686023-78686042 | MS.gene76264:CDS | 45.0% | |
| ! | GCATGTATTTGTGGTGTTGG+TGG | + | chr1.1:78685385-78685404 | MS.gene76264:CDS | 45.0% |
| ! | GTATGGTTTAAGTGCTGCTG+TGG | + | chr1.1:78685069-78685088 | MS.gene76264:CDS | 45.0% |
| ! | TCCATTGGTGTTCATGGTTG+GGG | + | chr1.1:78684332-78684351 | MS.gene76264:CDS | 45.0% |
| ! | TGGTCTTGCTGGATTCTTGT+TGG | + | chr1.1:78685003-78685022 | MS.gene76264:CDS | 45.0% |
| AGCAGCTGCCATGATTAGGA+AGG | - | chr1.1:78684417-78684436 | None:intergenic | 50.0% | |
| AGCTGCCATGATTAGGAAGG+AGG | - | chr1.1:78684414-78684433 | None:intergenic | 50.0% | |
| CATGTTCGGTCTATACTCCC+CGG | + | chr1.1:78684448-78684467 | MS.gene76264:CDS | 50.0% | |
| CTCACCGTCCAATTCATCAC+CGG | + | chr1.1:78684368-78684387 | MS.gene76264:CDS | 50.0% | |
| GGAAGAAGCAGAAATGGTGG+AGG | + | chr1.1:78686026-78686045 | MS.gene76264:CDS | 50.0% | |
| GTGTTCAATCCACCAGCAAG+AGG | + | chr1.1:78685304-78685323 | MS.gene76264:CDS | 50.0% | |
| TCCCCAACCATGAACACCAA+TGG | - | chr1.1:78684336-78684355 | None:intergenic | 50.0% | |
| TTCCTAATCATGGCAGCTGC+TGG | + | chr1.1:78684416-78684435 | MS.gene76264:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTCCTTTC+AGG | + | chr1.1:78684539-78684558 | MS.gene76264:CDS | 50.0% |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | + | chr1.1:78685763-78685782 | MS.gene76264:CDS | 50.0% |
| ACCACCGTCCGGTGATGAAT+TGG | - | chr1.1:78684379-78684398 | None:intergenic | 55.0% | |
| CAGCAGAGGTTGTTGAACCG+AGG | - | chr1.1:78685240-78685259 | None:intergenic | 55.0% | |
| CCGTCCAATTCATCACCGGA+CGG | + | chr1.1:78684372-78684391 | MS.gene76264:CDS | 55.0% | |
| CCGTCCGGTGATGAATTGGA+CGG | - | chr1.1:78684375-78684394 | None:intergenic | 55.0% | |
| CTCCAGCAGCTGCCATGATT+AGG | - | chr1.1:78684421-78684440 | None:intergenic | 55.0% | |
| GAAGCTACGTAGAGACCCTC+TGG | - | chr1.1:78685643-78685662 | None:intergenic | 55.0% | |
| GCTGGAGCCACCTACATGTT+CGG | + | chr1.1:78684434-78684453 | MS.gene76264:CDS | 55.0% | |
| TCCAATTCATCACCGGACGG+TGG | + | chr1.1:78684375-78684394 | MS.gene76264:CDS | 55.0% | |
| AAAACCGCGCCGCGAGATTC+CGG | - | chr1.1:78684770-78684789 | None:intergenic | 60.0% | |
| ! | GAATCTCGCGGCGCGGTTTT+GGG | + | chr1.1:78684770-78684789 | MS.gene76264:CDS | 60.0% |
| AAACCGCGCCGCGAGATTCC+GGG | - | chr1.1:78684769-78684788 | None:intergenic | 65.0% | |
| TTTCCCGGAATCTCGCGGCG+CGG | + | chr1.1:78684763-78684782 | MS.gene76264:CDS | 65.0% | |
| ! | GGAATCTCGCGGCGCGGTTT+TGG | + | chr1.1:78684769-78684788 | MS.gene76264:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78684317 | 78686116 | 78684317 | ID=MS.gene76264 |
| chr1.1 | mRNA | 78684317 | 78686116 | 78684317 | ID=MS.gene76264.t1;Parent=MS.gene76264 |
| chr1.1 | exon | 78684317 | 78686116 | 78684317 | ID=MS.gene76264.t1.exon1;Parent=MS.gene76264.t1 |
| chr1.1 | CDS | 78684317 | 78686116 | 78684317 | ID=cds.MS.gene76264.t1;Parent=MS.gene76264.t1 |
| Gene Sequence |
| Protein sequence |
