Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76388.t1 | AES90988.2 | 91.3 | 252 | 14 | 2 | 5 | 249 | 70 | 320 | 4.10E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76388.t1 | Q9XJ36 | 62.6 | 243 | 81 | 3 | 14 | 249 | 40 | 279 | 9.3e-85 | 314.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76388.t1 | G7JK76 | 91.3 | 252 | 14 | 2 | 5 | 249 | 70 | 320 | 2.9e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054403 | MS.gene76388 | -0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene76388 | -0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene059901 | MS.gene76388 | 0.800605 | 1.33E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76388.t1 | MTR_4g102000 | 91.270 | 252 | 14 | 2 | 5 | 249 | 70 | 320 | 8.22e-169 | 468 |
| MS.gene76388.t1 | MTR_0002s0730 | 41.146 | 192 | 104 | 2 | 44 | 227 | 1 | 191 | 3.39e-45 | 151 |
| MS.gene76388.t1 | MTR_4g034690 | 35.938 | 192 | 114 | 2 | 44 | 227 | 1 | 191 | 1.26e-42 | 144 |
| MS.gene76388.t1 | MTR_7g109610 | 35.385 | 195 | 113 | 3 | 48 | 230 | 86 | 279 | 5.62e-35 | 127 |
| MS.gene76388.t1 | MTR_7g082980 | 35.417 | 192 | 116 | 3 | 61 | 245 | 75 | 265 | 1.16e-34 | 126 |
| MS.gene76388.t1 | MTR_1g086940 | 35.000 | 200 | 114 | 4 | 46 | 230 | 84 | 282 | 7.70e-34 | 124 |
| MS.gene76388.t1 | MTR_4g075100 | 33.505 | 194 | 116 | 4 | 65 | 246 | 45 | 237 | 1.02e-30 | 114 |
| MS.gene76388.t1 | MTR_5g026840 | 30.043 | 233 | 136 | 5 | 2 | 227 | 44 | 256 | 1.06e-28 | 110 |
| MS.gene76388.t1 | MTR_4g069800 | 29.752 | 242 | 144 | 7 | 4 | 227 | 34 | 267 | 3.34e-27 | 105 |
| MS.gene76388.t1 | MTR_4g069800 | 31.902 | 163 | 103 | 2 | 72 | 227 | 74 | 235 | 4.17e-24 | 97.1 |
| MS.gene76388.t1 | MTR_4g069800 | 29.897 | 194 | 117 | 6 | 4 | 186 | 34 | 219 | 1.84e-20 | 87.4 |
| MS.gene76388.t1 | MTR_4g099360 | 33.862 | 189 | 109 | 3 | 65 | 238 | 104 | 291 | 3.86e-20 | 87.8 |
| MS.gene76388.t1 | MTR_1g106550 | 30.978 | 184 | 109 | 4 | 65 | 231 | 155 | 337 | 2.30e-16 | 77.8 |
| MS.gene76388.t1 | MTR_7g112640 | 28.723 | 188 | 114 | 4 | 76 | 243 | 120 | 307 | 4.35e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76388.t1 | AT1G12410 | 62.551 | 243 | 81 | 3 | 14 | 249 | 40 | 279 | 1.05e-112 | 325 |
| MS.gene76388.t1 | ATCG00670 | 41.146 | 192 | 104 | 2 | 44 | 227 | 1 | 191 | 2.30e-50 | 164 |
| MS.gene76388.t1 | AT1G02560 | 36.410 | 195 | 111 | 3 | 48 | 230 | 92 | 285 | 1.55e-35 | 128 |
| MS.gene76388.t1 | AT1G66670 | 34.946 | 186 | 110 | 5 | 52 | 230 | 75 | 256 | 5.12e-34 | 124 |
| MS.gene76388.t1 | AT5G23140 | 33.696 | 184 | 112 | 3 | 65 | 239 | 48 | 230 | 1.09e-32 | 119 |
| MS.gene76388.t1 | AT4G17040 | 30.667 | 225 | 134 | 4 | 29 | 238 | 75 | 292 | 1.06e-28 | 110 |
| MS.gene76388.t1 | AT5G45390 | 33.526 | 173 | 107 | 2 | 65 | 230 | 79 | 250 | 1.38e-28 | 110 |
| MS.gene76388.t1 | AT1G11750 | 32.749 | 171 | 107 | 2 | 64 | 227 | 95 | 264 | 1.11e-26 | 104 |
| MS.gene76388.t1 | AT1G11750 | 32.749 | 171 | 107 | 2 | 64 | 227 | 113 | 282 | 2.07e-26 | 104 |
| MS.gene76388.t1 | AT1G09130 | 29.891 | 184 | 110 | 3 | 65 | 230 | 121 | 303 | 1.10e-20 | 89.7 |
| MS.gene76388.t1 | AT1G09130 | 29.891 | 184 | 110 | 3 | 65 | 230 | 121 | 303 | 1.10e-20 | 89.7 |
| MS.gene76388.t1 | AT1G09130 | 29.891 | 184 | 110 | 3 | 65 | 230 | 121 | 303 | 2.30e-20 | 89.4 |
| MS.gene76388.t1 | AT1G49970 | 33.333 | 183 | 104 | 4 | 65 | 230 | 171 | 352 | 4.04e-18 | 83.2 |
Find 63 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAATGGGTTGATTTA+TGG | 0.135179 | 8.1:+30148948 | MS.gene76388:CDS |
| TTTGTGCCCTTACTGGTTTC+TGG | 0.139154 | 8.1:-30148868 | None:intergenic |
| TTAACAAGGTTCGCAATTTC+AGG | 0.205027 | 8.1:+30148155 | MS.gene76388:CDS |
| AAGCTCTATTTGTACATTAA+TGG | 0.249052 | 8.1:+30149268 | MS.gene76388:CDS |
| GCACAAAAGCCCCTTGACTA+TGG | 0.253592 | 8.1:+30150947 | MS.gene76388:CDS |
| ATCCGAATTTGTGCCCTTAC+TGG | 0.280153 | 8.1:-30148875 | None:intergenic |
| CCTTCACCAGGTGTTCTATA+GGG | 0.283797 | 8.1:-30148923 | None:intergenic |
| AATGTACAAATAGAGCTTCT+TGG | 0.308684 | 8.1:-30149263 | None:intergenic |
| AGAATTTAGCAATCAAATAT+TGG | 0.329049 | 8.1:+30149207 | MS.gene76388:CDS |
| TCCTTCACCAGGTGTTCTAT+AGG | 0.343431 | 8.1:-30148924 | None:intergenic |
| CCTCGCAAGGATGCTGGCTC+AGG | 0.377210 | 8.1:+30151016 | MS.gene76388:CDS |
| GCAGGAGCTGCTCGTGGGTC+GGG | 0.406333 | 8.1:+30150329 | MS.gene76388:CDS |
| GAGCAGCTCCTGCTGGAGAT+TGG | 0.410929 | 8.1:-30150319 | None:intergenic |
| GATGCACCTCGCAAGGATGC+TGG | 0.413454 | 8.1:+30151010 | MS.gene76388:CDS |
| AACCAGTAAGGGCACAAATT+CGG | 0.415853 | 8.1:+30148873 | MS.gene76388:CDS |
| ACTGAGTTGGCTAACAAAAC+AGG | 0.417281 | 8.1:+30150513 | MS.gene76388:CDS |
| CATTGCATAGGCCAAGCTTA+TGG | 0.426540 | 8.1:+30149476 | MS.gene76388:CDS |
| GACCCACGAGCAGCTCCTGC+TGG | 0.431873 | 8.1:-30150326 | None:intergenic |
| AGCAGGAGCTGCTCGTGGGT+CGG | 0.440186 | 8.1:+30150328 | MS.gene76388:CDS |
| TATTTGTACATTAATGGTCC+TGG | 0.451192 | 8.1:+30149274 | MS.gene76388:CDS |
| GCAGCATTTCTACTTGCAGC+TGG | 0.472807 | 8.1:+30149503 | MS.gene76388:CDS |
| GAACACCTGGTGAAGGAACT+TGG | 0.483547 | 8.1:+30148930 | MS.gene76388:CDS |
| AGTGCACTGACCTTCTCAAC+AGG | 0.489035 | 8.1:-30150540 | None:intergenic |
| TCTCCAGCAGGAGCTGCTCG+TGG | 0.489493 | 8.1:+30150323 | MS.gene76388:CDS |
| GAACGTGTTATCTTCTTCGT+TGG | 0.498500 | 8.1:+30149169 | MS.gene76388:CDS |
| ATAAGCTTGGCCTATGCAAT+GGG | 0.498894 | 8.1:-30149474 | None:intergenic |
| AGATCACCGAAGACTTGAAA+AGG | 0.502063 | 8.1:+30150909 | MS.gene76388:intron |
| AAGGATGCTGGCTCAGGCAT+TGG | 0.507073 | 8.1:+30151022 | MS.gene76388:CDS |
| CACAAAAGCCCCTTGACTAT+GGG | 0.509606 | 8.1:+30150948 | MS.gene76388:CDS |
| CATAAGCTTGGCCTATGCAA+TGG | 0.509916 | 8.1:-30149475 | None:intergenic |
| GGCTCATTGACAGATTTGTC+AGG | 0.511066 | 8.1:+30150969 | MS.gene76388:CDS |
| CTTCACCAGGTGTTCTATAG+GGG | 0.512601 | 8.1:-30148922 | None:intergenic |
| CATTGCCAAGTTCCTTCACC+AGG | 0.537354 | 8.1:-30148935 | None:intergenic |
| CAAATTCGGATGATGCCCAT+TGG | 0.537610 | 8.1:+30148887 | MS.gene76388:CDS |
| GTCAATGAGCCCATAGTCAA+GGG | 0.540984 | 8.1:-30150957 | None:intergenic |
| TTGACAGATTTGTCAGGCCA+CGG | 0.548140 | 8.1:+30150975 | MS.gene76388:CDS |
| AACAGGCCAGCCTGTTGAGA+AGG | 0.549239 | 8.1:+30150530 | MS.gene76388:CDS |
| ATGCTAACCAGAAACCAGTA+AGG | 0.549654 | 8.1:+30148861 | MS.gene76388:CDS |
| TGTACATTAATGGTCCTGGT+GGG | 0.550538 | 8.1:+30149278 | MS.gene76388:CDS |
| GGTGTTCTATAGGGGACTCT+AGG | 0.553085 | 8.1:-30148914 | None:intergenic |
| CTCCAGCAGGAGCTGCTCGT+GGG | 0.554470 | 8.1:+30150324 | MS.gene76388:CDS |
| CACTGACCTTCTCAACAGGC+TGG | 0.557642 | 8.1:-30150536 | None:intergenic |
| AAAAGCTGATGCACCTCGCA+AGG | 0.558743 | 8.1:+30151003 | MS.gene76388:CDS |
| TCTACTTGCAGCTGGAGAGA+AGG | 0.566048 | 8.1:+30149511 | MS.gene76388:CDS |
| CTGGTGAAGGAACTTGGCAA+TGG | 0.569072 | 8.1:+30148936 | MS.gene76388:CDS |
| TGTCAATGAGCCCATAGTCA+AGG | 0.569550 | 8.1:-30150958 | None:intergenic |
| CCCTATAGAACACCTGGTGA+AGG | 0.570130 | 8.1:+30148923 | MS.gene76388:CDS |
| GGGGACTCTAGGAGTTCCAA+TGG | 0.572526 | 8.1:-30148903 | None:intergenic |
| ATGCTGCAAGACCATAAGCT+TGG | 0.573039 | 8.1:-30149487 | None:intergenic |
| AGAAGTTTGCAAGCTTTGCA+TGG | 0.574894 | 8.1:-30149444 | None:intergenic |
| CCTGAGCCAGCATCCTTGCG+AGG | 0.577721 | 8.1:-30151016 | None:intergenic |
| TCTATATGCACCCATTGCAT+AGG | 0.584626 | 8.1:+30149464 | MS.gene76388:CDS |
| TTGTACATTAATGGTCCTGG+TGG | 0.587069 | 8.1:+30149277 | MS.gene76388:CDS |
| TGGAGAACAATTCTTGCAAG+AGG | 0.588103 | 8.1:-30150299 | None:intergenic |
| TGGTGAAGGAACTTGGCAAT+GGG | 0.591675 | 8.1:+30148937 | MS.gene76388:CDS |
| ATTGTTCTCCAATCTCCAGC+AGG | 0.591740 | 8.1:+30150311 | MS.gene76388:CDS |
| AGAGTCCCCTATAGAACACC+TGG | 0.598970 | 8.1:+30148917 | MS.gene76388:CDS |
| GGGACTCTAGGAGTTCCAAT+GGG | 0.623929 | 8.1:-30148902 | None:intergenic |
| GTACATTAATGGTCCTGGTG+GGG | 0.636476 | 8.1:+30149279 | MS.gene76388:CDS |
| TCATTACTTACATCCCCACC+AGG | 0.676936 | 8.1:-30149292 | None:intergenic |
| TGCTAACCAGAAACCAGTAA+GGG | 0.683549 | 8.1:+30148862 | MS.gene76388:CDS |
| TCAATGAGCCCATAGTCAAG+GGG | 0.688786 | 8.1:-30150956 | None:intergenic |
| GTATCATAAAGAGACATGCA+TGG | 0.699170 | 8.1:-30149422 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTATTATTTT+CGG | + | chr8.1:30148369-30148388 | MS.gene76388:intron | 0.0% |
| !! | AAATTGAATTGAAAAATTTG+TGG | - | chr8.1:30147909-30147928 | None:intergenic | 15.0% |
| !! | AATTGAATTGAAAAATTTGT+GGG | - | chr8.1:30147908-30147927 | None:intergenic | 15.0% |
| !! | CAATAAATATAATACATGTT+AGG | - | chr8.1:30149909-30149928 | None:intergenic | 15.0% |
| !!! | TTATGATTGGAATTTTTTTA+AGG | + | chr8.1:30148452-30148471 | MS.gene76388:intron | 15.0% |
| !! | AAAAAATGAAGTGAAGAAAA+TGG | - | chr8.1:30148024-30148043 | None:intergenic | 20.0% |
| !! | AAAAATGAAGTGAAGAAAAT+GGG | - | chr8.1:30148023-30148042 | None:intergenic | 20.0% |
| !! | AAAAGTTCCTGAAAAATATT+TGG | + | chr8.1:30150674-30150693 | MS.gene76388:intron | 20.0% |
| !! | AATAAAACTCGTTATGATTT+CGG | - | chr8.1:30150857-30150876 | None:intergenic | 20.0% |
| !! | AATCATAATATATAACACCA+CGG | - | chr8.1:30148440-30148459 | None:intergenic | 20.0% |
| !! | AGAATTTAGCAATCAAATAT+TGG | + | chr8.1:30149207-30149226 | MS.gene76388:CDS | 20.0% |
| !! | AGTTAATTATTTAGAAGAAC+TGG | + | chr8.1:30149123-30149142 | MS.gene76388:intron | 20.0% |
| !! | GTATGTTAAAATGAAAAAGT+TGG | + | chr8.1:30149983-30150002 | MS.gene76388:intron | 20.0% |
| !! | TAAAAAGATTTCCTACATTA+CGG | + | chr8.1:30149630-30149649 | MS.gene76388:intron | 20.0% |
| !! | TACCTAAAAACATAAAAGTT+TGG | - | chr8.1:30148842-30148861 | None:intergenic | 20.0% |
| !! | TTATATATAACCACAAAAGA+AGG | + | chr8.1:30149839-30149858 | MS.gene76388:intron | 20.0% |
| !!! | AAAGTACCTAAAATTGAAAA+TGG | - | chr8.1:30148085-30148104 | None:intergenic | 20.0% |
| !!! | TTTTCAATTTTAGGTACTTT+TGG | + | chr8.1:30148085-30148104 | MS.gene76388:intron | 20.0% |
| !!! | TTTTTTTGTTAATTTCCTGT+TGG | + | chr8.1:30148291-30148310 | MS.gene76388:intron | 20.0% |
| ! | AAAAAGATTTCCTACATTAC+GGG | + | chr8.1:30149631-30149650 | MS.gene76388:intron | 25.0% |
| ! | AAAACATAAAAGTTTGGCAT+TGG | - | chr8.1:30148836-30148855 | None:intergenic | 25.0% |
| ! | AAAGAAGCTTAGATAATGAA+AGG | - | chr8.1:30150763-30150782 | None:intergenic | 25.0% |
| ! | AAGCTCTATTTGTACATTAA+TGG | + | chr8.1:30149268-30149287 | MS.gene76388:CDS | 25.0% |
| ! | ATGATCCTTAATCATATTTG+TGG | - | chr8.1:30149766-30149785 | None:intergenic | 25.0% |
| ! | ATTCTCAATATAATCAAGGA+TGG | + | chr8.1:30149675-30149694 | MS.gene76388:intron | 25.0% |
| ! | GTAATGTTCTGTTGTATTAA+GGG | + | chr8.1:30150260-30150279 | MS.gene76388:intron | 25.0% |
| ! | TAAGTAATGATTCTAGTGTT+TGG | + | chr8.1:30149305-30149324 | MS.gene76388:intron | 25.0% |
| ! | TGTAATGTTCTGTTGTATTA+AGG | + | chr8.1:30150259-30150278 | MS.gene76388:intron | 25.0% |
| ! | TTGCATTCTCAATATAATCA+AGG | + | chr8.1:30149671-30149690 | MS.gene76388:intron | 25.0% |
| ! | TTGTCACATTCATTTCTAAT+TGG | + | chr8.1:30150145-30150164 | MS.gene76388:intron | 25.0% |
| ! | TTTCCATAATTTCAAACTAC+CGG | - | chr8.1:30150014-30150033 | None:intergenic | 25.0% |
| !! | AGGAAATCCAAATATTTTTC+AGG | - | chr8.1:30150684-30150703 | None:intergenic | 25.0% |
| !! | ATATTATCTTTTCACTGAGT+TGG | + | chr8.1:30150500-30150519 | MS.gene76388:CDS | 25.0% |
| !! | GAATTTAACTTCATCTACAA+AGG | - | chr8.1:30150704-30150723 | None:intergenic | 25.0% |
| !! | TGAAAGTATGGATTAAAACA+TGG | + | chr8.1:30148710-30148729 | MS.gene76388:intron | 25.0% |
| !! | TGCCAAACTTTTATGTTTTT+AGG | + | chr8.1:30148837-30148856 | MS.gene76388:intron | 25.0% |
| !!! | ATTATTATTTTCGGATTAGC+AGG | + | chr8.1:30148378-30148397 | MS.gene76388:intron | 25.0% |
| !!! | GAACTCTAAGATACAAAAAA+TGG | - | chr8.1:30150813-30150832 | None:intergenic | 25.0% |
| !!! | GTGGTGTTATATATTATGAT+TGG | + | chr8.1:30148439-30148458 | MS.gene76388:intron | 25.0% |
| !!! | GTTTTAATCCATACTTTCAT+TGG | - | chr8.1:30148709-30148728 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGTAAAGTTAACA+AGG | + | chr8.1:30148141-30148160 | MS.gene76388:CDS | 25.0% |
| !!! | TCTTAGAGTTCATTTTTTCA+TGG | + | chr8.1:30150822-30150841 | MS.gene76388:intron | 25.0% |
| AAAACATGGTTTATGTCACT+TGG | + | chr8.1:30148724-30148743 | MS.gene76388:intron | 30.0% | |
| AAAAGACGAAAATAAACTCG+AGG | - | chr8.1:30149098-30149117 | None:intergenic | 30.0% | |
| AAAAGATTTCCTACATTACG+GGG | + | chr8.1:30149632-30149651 | MS.gene76388:intron | 30.0% | |
| AACATTGTGAAAACTCTTTC+AGG | + | chr8.1:30150434-30150453 | MS.gene76388:intron | 30.0% | |
| AAGTTGTATTAACAGACAGT+GGG | - | chr8.1:30149548-30149567 | None:intergenic | 30.0% | |
| AATGTACAAATAGAGCTTCT+TGG | - | chr8.1:30149266-30149285 | None:intergenic | 30.0% | |
| ATCCTTAATCATATTTGTGG+TGG | - | chr8.1:30149763-30149782 | None:intergenic | 30.0% | |
| ATGATCATTCATGACAGTTA+AGG | - | chr8.1:30149937-30149956 | None:intergenic | 30.0% | |
| CAAGATGTAACAACTTACAA+GGG | - | chr8.1:30148978-30148997 | None:intergenic | 30.0% | |
| CAAGTAATTGATTATGTCAC+TGG | + | chr8.1:30148226-30148245 | MS.gene76388:intron | 30.0% | |
| GTATAAAGTCCATTCAACAA+AGG | - | chr8.1:30149701-30149720 | None:intergenic | 30.0% | |
| GTTAAAATGAAAAAGTTGGC+AGG | + | chr8.1:30149987-30150006 | MS.gene76388:intron | 30.0% | |
| TACACTTATCTAAGAAGAAC+TGG | + | chr8.1:30149018-30149037 | MS.gene76388:intron | 30.0% | |
| TACATAGATATCTCTTCTGT+AGG | - | chr8.1:30149727-30149746 | None:intergenic | 30.0% | |
| TATTTGTACATTAATGGTCC+TGG | + | chr8.1:30149274-30149293 | MS.gene76388:CDS | 30.0% | |
| TCAAGATGTAACAACTTACA+AGG | - | chr8.1:30148979-30148998 | None:intergenic | 30.0% | |
| TCCTTAATCATATTTGTGGT+GGG | - | chr8.1:30149762-30149781 | None:intergenic | 30.0% | |
| TGACATCTATCTCAGAAAAA+AGG | - | chr8.1:30150363-30150382 | None:intergenic | 30.0% | |
| TTCTTTGACCAATGAAAGTA+TGG | + | chr8.1:30148698-30148717 | MS.gene76388:intron | 30.0% | |
| ! | AAACTCATTTCCTTCTTTTG+TGG | - | chr8.1:30149852-30149871 | None:intergenic | 30.0% |
| ! | ATCACAAATGTAATTTTGCG+AGG | + | chr8.1:30148660-30148679 | MS.gene76388:intron | 30.0% |
| !! | GCACTTTAAAATGGAATTCA+TGG | + | chr8.1:30150558-30150577 | MS.gene76388:intron | 30.0% |
| !! | TGAATCTATTGACTTCTCTA+AGG | + | chr8.1:30150201-30150220 | MS.gene76388:intron | 30.0% |
| !!! | TCATAACGAGTTTTATTTGC+TGG | + | chr8.1:30150860-30150879 | MS.gene76388:intron | 30.0% |
| !!! | TTTTGTCCTTTTCAAGTCTT+CGG | - | chr8.1:30150918-30150937 | None:intergenic | 30.0% |
| AATGTGACAACAAAGCAGAA+TGG | - | chr8.1:30150135-30150154 | None:intergenic | 35.0% | |
| ATCTATCTCAGAAAAAAGGC+AGG | - | chr8.1:30150359-30150378 | None:intergenic | 35.0% | |
| ATGATATTTGTCGCGAGAAA+TGG | + | chr8.1:30148478-30148497 | MS.gene76388:intron | 35.0% | |
| CAAGTTGTATTAACAGACAG+TGG | - | chr8.1:30149549-30149568 | None:intergenic | 35.0% | |
| CACACAGAGAAGAAGTTATT+TGG | - | chr8.1:30150647-30150666 | None:intergenic | 35.0% | |
| CCTTAATCATATTTGTGGTG+GGG | - | chr8.1:30149761-30149780 | None:intergenic | 35.0% | |
| GATTCAATACTACAAGCACA+AGG | - | chr8.1:30150187-30150206 | None:intergenic | 35.0% | |
| GTAATGATTCTAGTGTTTGG+TGG | + | chr8.1:30149308-30149327 | MS.gene76388:intron | 35.0% | |
| GTATCATAAAGAGACATGCA+TGG | - | chr8.1:30149425-30149444 | None:intergenic | 35.0% | |
| TAATTAGTTGCTTCCCAAGA+GGG | + | chr8.1:30148543-30148562 | MS.gene76388:intron | 35.0% | |
| TATCTAAGAAGAACTGGTGA+AGG | + | chr8.1:30149024-30149043 | MS.gene76388:intron | 35.0% | |
| TGAAGATTGGAGTTTCAATC+CGG | - | chr8.1:30147994-30148013 | None:intergenic | 35.0% | |
| TGATATTTGTCGCGAGAAAT+GGG | + | chr8.1:30148479-30148498 | MS.gene76388:intron | 35.0% | |
| TTAACAAGGTTCGCAATTTC+AGG | + | chr8.1:30148155-30148174 | MS.gene76388:CDS | 35.0% | |
| TTTCAATCCGGAGTAGAATT+TGG | - | chr8.1:30147982-30148001 | None:intergenic | 35.0% | |
| ! | AAGGTCAGTGCACTTTAAAA+TGG | + | chr8.1:30150549-30150568 | MS.gene76388:intron | 35.0% |
| ! | ATTTGGTGGAAACACTGAAA+TGG | - | chr8.1:30147965-30147984 | None:intergenic | 35.0% |
| ! | GATACATTTTTCCTAGATGC+TGG | + | chr8.1:30148338-30148357 | MS.gene76388:intron | 35.0% |
| ! | GATTTGGAATAAGATCGTGA+AGG | - | chr8.1:30150098-30150117 | None:intergenic | 35.0% |
| !! | AATTTCAGGTAATGGGTTGT+GGG | + | chr8.1:30148169-30148188 | MS.gene76388:intron | 35.0% |
| !! | CAAGTGACTTTGCTTTTACA+AGG | + | chr8.1:30150723-30150742 | MS.gene76388:intron | 35.0% |
| !! | CACTCGCCATTTTCAATTTT+AGG | + | chr8.1:30148076-30148095 | MS.gene76388:intron | 35.0% |
| !!! | AATGCAAACGCTCAGTTTTT+TGG | + | chr8.1:30148127-30148146 | MS.gene76388:CDS | 35.0% |
| AAGCAGAATGGAGTACAAAG+AGG | - | chr8.1:30150123-30150142 | None:intergenic | 40.0% | |
| AATGAAAAAGTTGGCAGGTC+CGG | + | chr8.1:30149992-30150011 | MS.gene76388:intron | 40.0% | |
| AATGATTGCTTCCAGCATCT+AGG | - | chr8.1:30148352-30148371 | None:intergenic | 40.0% | |
| ACATGTTAGGTACTCACCTT+TGG | - | chr8.1:30149896-30149915 | None:intergenic | 40.0% | |
| AGAAGTTTGCAAGCTTTGCA+TGG | - | chr8.1:30149447-30149466 | None:intergenic | 40.0% | |
| AGATCACCGAAGACTTGAAA+AGG | + | chr8.1:30150909-30150928 | MS.gene76388:intron | 40.0% | |
| ATAAGCTTGGCCTATGCAAT+GGG | - | chr8.1:30149477-30149496 | None:intergenic | 40.0% | |
| ATGCTAACCAGAAACCAGTA+AGG | + | chr8.1:30148861-30148880 | MS.gene76388:CDS | 40.0% | |
| CCCCACCACAAATATGATTA+AGG | + | chr8.1:30149758-30149777 | MS.gene76388:intron | 40.0% | |
| CTAATTAGTTGCTTCCCAAG+AGG | + | chr8.1:30148542-30148561 | MS.gene76388:intron | 40.0% | |
| GAACGTGTTATCTTCTTCGT+TGG | + | chr8.1:30149169-30149188 | MS.gene76388:CDS | 40.0% | |
| GGAGTACAAAGAGGAAGATT+TGG | - | chr8.1:30150114-30150133 | None:intergenic | 40.0% | |
| GTTTCCACCAAATTCTACTC+CGG | + | chr8.1:30147972-30147991 | MS.gene76388:intron | 40.0% | |
| TAACCGATTAAGATCTCTCC+TGG | - | chr8.1:30148577-30148596 | None:intergenic | 40.0% | |
| TCTATATGCACCCATTGCAT+AGG | + | chr8.1:30149464-30149483 | MS.gene76388:CDS | 40.0% | |
| TCTTCGGTGATCTGAAGATA+TGG | - | chr8.1:30150902-30150921 | None:intergenic | 40.0% | |
| TGCTAACCAGAAACCAGTAA+GGG | + | chr8.1:30148862-30148881 | MS.gene76388:CDS | 40.0% | |
| TGGAGAACAATTCTTGCAAG+AGG | - | chr8.1:30150302-30150321 | None:intergenic | 40.0% | |
| TGGTGAAGGAACATAGCAAT+GGG | + | chr8.1:30149038-30149057 | MS.gene76388:intron | 40.0% | |
| TGTACATTAATGGTCCTGGT+GGG | + | chr8.1:30149278-30149297 | MS.gene76388:CDS | 40.0% | |
| TTGTACATTAATGGTCCTGG+TGG | + | chr8.1:30149277-30149296 | MS.gene76388:CDS | 40.0% | |
| TTGTCATAGCACGAGGTTTA+AGG | + | chr8.1:30149581-30149600 | MS.gene76388:intron | 40.0% | |
| ! | AACCAGTAAGGGCACAAATT+CGG | + | chr8.1:30148873-30148892 | MS.gene76388:CDS | 40.0% |
| ! | ACTGAGTTGGCTAACAAAAC+AGG | + | chr8.1:30150513-30150532 | MS.gene76388:CDS | 40.0% |
| ! | AGGTTCGCAATTTCAGGTAA+TGG | + | chr8.1:30148161-30148180 | MS.gene76388:intron | 40.0% |
| ! | CAAAAGCATAAGTGGTAGCA+CGG | + | chr8.1:30148506-30148525 | MS.gene76388:intron | 40.0% |
| ! | CAATCGACAGTTGATATTGC+TGG | - | chr8.1:30149964-30149983 | None:intergenic | 40.0% |
| ! | GGTCCGGTAGTTTGAAATTA+TGG | + | chr8.1:30150008-30150027 | MS.gene76388:intron | 40.0% |
| ! | GGTTCGCAATTTCAGGTAAT+GGG | + | chr8.1:30148162-30148181 | MS.gene76388:intron | 40.0% |
| ! | GTTACTTTATGACGTAGTCG+TGG | + | chr8.1:30149060-30149079 | MS.gene76388:intron | 40.0% |
| ! | TGGGATCACAAAAGCATAAG+TGG | + | chr8.1:30148498-30148517 | MS.gene76388:intron | 40.0% |
| !! | CAATTTCAGGTAATGGGTTG+TGG | + | chr8.1:30148168-30148187 | MS.gene76388:intron | 40.0% |
| !! | CTTGGCAATGGGTTGATTTA+TGG | + | chr8.1:30148948-30148967 | MS.gene76388:CDS | 40.0% |
| !! | CTTTAATTTGCGAGTCCTTC+AGG | + | chr8.1:30148598-30148617 | MS.gene76388:intron | 40.0% |
| AAATGGGCACACGTGAAGAT+TGG | - | chr8.1:30148007-30148026 | None:intergenic | 45.0% | |
| ATCCGAATTTGTGCCCTTAC+TGG | - | chr8.1:30148878-30148897 | None:intergenic | 45.0% | |
| ATGCTGCAAGACCATAAGCT+TGG | - | chr8.1:30149490-30149509 | None:intergenic | 45.0% | |
| ATTGTTCTCCAATCTCCAGC+AGG | + | chr8.1:30150311-30150330 | MS.gene76388:CDS | 45.0% | |
| CAAATTCGGATGATGCCCAT+TGG | + | chr8.1:30148887-30148906 | MS.gene76388:CDS | 45.0% | |
| CAAGGATGGCCTTTGTTGAA+TGG | + | chr8.1:30149689-30149708 | MS.gene76388:intron | 45.0% | |
| CAATCCGGAGTAGAATTTGG+TGG | - | chr8.1:30147979-30147998 | None:intergenic | 45.0% | |
| CACAAAAGCCCCTTGACTAT+GGG | + | chr8.1:30150948-30150967 | MS.gene76388:CDS | 45.0% | |
| CATAAGCTTGGCCTATGCAA+TGG | - | chr8.1:30149478-30149497 | None:intergenic | 45.0% | |
| CATTGCATAGGCCAAGCTTA+TGG | + | chr8.1:30149476-30149495 | MS.gene76388:CDS | 45.0% | |
| CCATTGTGTTTGCATCCAAC+AGG | - | chr8.1:30148309-30148328 | None:intergenic | 45.0% | |
| CCTGTTGGATGCAAACACAA+TGG | + | chr8.1:30148306-30148325 | MS.gene76388:intron | 45.0% | |
| CCTTCACCAGGTGTTCTATA+GGG | - | chr8.1:30148926-30148945 | None:intergenic | 45.0% | |
| CTGGTGAAGGAACATAGCAA+TGG | + | chr8.1:30149037-30149056 | MS.gene76388:intron | 45.0% | |
| CTTCACCAGGTGTTCTATAG+GGG | - | chr8.1:30148925-30148944 | None:intergenic | 45.0% | |
| GGCTCATTGACAGATTTGTC+AGG | + | chr8.1:30150969-30150988 | MS.gene76388:CDS | 45.0% | |
| GTACATTAATGGTCCTGGTG+GGG | + | chr8.1:30149279-30149298 | MS.gene76388:CDS | 45.0% | |
| GTCAATGAGCCCATAGTCAA+GGG | - | chr8.1:30150960-30150979 | None:intergenic | 45.0% | |
| GTTAAGCTTGTCATAGCACG+AGG | + | chr8.1:30149574-30149593 | MS.gene76388:intron | 45.0% | |
| TCAATGAGCCCATAGTCAAG+GGG | - | chr8.1:30150959-30150978 | None:intergenic | 45.0% | |
| TCATTACTTACATCCCCACC+AGG | - | chr8.1:30149295-30149314 | None:intergenic | 45.0% | |
| TCCTACATTACGGGGTTGTA+CGG | + | chr8.1:30149640-30149659 | MS.gene76388:intron | 45.0% | |
| TCCTTCACCAGGTGTTCTAT+AGG | - | chr8.1:30148927-30148946 | None:intergenic | 45.0% | |
| TGGTGAAGGAACTTGGCAAT+GGG | + | chr8.1:30148937-30148956 | MS.gene76388:CDS | 45.0% | |
| TGTCAATGAGCCCATAGTCA+AGG | - | chr8.1:30150961-30150980 | None:intergenic | 45.0% | |
| TTCTCTACTTCTGTCGCCAA+AGG | + | chr8.1:30149877-30149896 | MS.gene76388:intron | 45.0% | |
| TTGACAGATTTGTCAGGCCA+CGG | + | chr8.1:30150975-30150994 | MS.gene76388:CDS | 45.0% | |
| !! | TTTGTGCCCTTACTGGTTTC+TGG | - | chr8.1:30148871-30148890 | None:intergenic | 45.0% |
| AAAAGCTGATGCACCTCGCA+AGG | + | chr8.1:30151003-30151022 | MS.gene76388:CDS | 50.0% | |
| AACCACGATCGAGTTCGTAG+AGG | + | chr8.1:30148409-30148428 | MS.gene76388:intron | 50.0% | |
| ACCGTACAACCCCGTAATGT+AGG | - | chr8.1:30149644-30149663 | None:intergenic | 50.0% | |
| AGAGTCCCCTATAGAACACC+TGG | + | chr8.1:30148917-30148936 | MS.gene76388:CDS | 50.0% | |
| AGTTCGTAGAGGACAAACCG+TGG | + | chr8.1:30148420-30148439 | MS.gene76388:intron | 50.0% | |
| CACGACAAACTGTCTCCTGA+AGG | - | chr8.1:30148616-30148635 | None:intergenic | 50.0% | |
| CATTGCCAAGTTCCTTCACC+AGG | - | chr8.1:30148938-30148957 | None:intergenic | 50.0% | |
| CCCTATAGAACACCTGGTGA+AGG | + | chr8.1:30148923-30148942 | MS.gene76388:CDS | 50.0% | |
| CGATTAAGATCTCTCCTGGC+CGG | - | chr8.1:30148573-30148592 | None:intergenic | 50.0% | |
| CGGCCAGGAGAGATCTTAAT+CGG | + | chr8.1:30148571-30148590 | MS.gene76388:intron | 50.0% | |
| CTGGTGAAGGAACTTGGCAA+TGG | + | chr8.1:30148936-30148955 | MS.gene76388:CDS | 50.0% | |
| GAACACCTGGTGAAGGAACT+TGG | + | chr8.1:30148930-30148949 | MS.gene76388:CDS | 50.0% | |
| GCACAAAAGCCCCTTGACTA+TGG | + | chr8.1:30150947-30150966 | MS.gene76388:CDS | 50.0% | |
| GCAGCATTTCTACTTGCAGC+TGG | + | chr8.1:30149503-30149522 | MS.gene76388:CDS | 50.0% | |
| GGTGTTCTATAGGGGACTCT+AGG | - | chr8.1:30148917-30148936 | None:intergenic | 50.0% | |
| TCTACTTGCAGCTGGAGAGA+AGG | + | chr8.1:30149511-30149530 | MS.gene76388:CDS | 50.0% | |
| ! | AGTGCACTGACCTTCTCAAC+AGG | - | chr8.1:30150543-30150562 | None:intergenic | 50.0% |
| ! | GGGACTCTAGGAGTTCCAAT+GGG | - | chr8.1:30148905-30148924 | None:intergenic | 50.0% |
| ! | TGCTTCCCAAGAGGGTTTTC+CGG | + | chr8.1:30148551-30148570 | MS.gene76388:intron | 50.0% |
| AACAGGCCAGCCTGTTGAGA+AGG | + | chr8.1:30150530-30150549 | MS.gene76388:CDS | 55.0% | |
| CACTGACCTTCTCAACAGGC+TGG | - | chr8.1:30150539-30150558 | None:intergenic | 55.0% | |
| GTCCTCTACGAACTCGATCG+TGG | - | chr8.1:30148414-30148433 | None:intergenic | 55.0% | |
| ! | GCATCAGCTTTTATGCGCCG+TGG | - | chr8.1:30150995-30151014 | None:intergenic | 55.0% |
| ! | GGGGACTCTAGGAGTTCCAA+TGG | - | chr8.1:30148906-30148925 | None:intergenic | 55.0% |
| !! | AAGGATGCTGGCTCAGGCAT+TGG | + | chr8.1:30151022-30151041 | MS.gene76388:CDS | 55.0% |
| CCTGGCCGGAAAACCCTCTT+GGG | - | chr8.1:30148559-30148578 | None:intergenic | 60.0% | |
| GAGCAGCTCCTGCTGGAGAT+TGG | - | chr8.1:30150322-30150341 | None:intergenic | 60.0% | |
| GATGCACCTCGCAAGGATGC+TGG | + | chr8.1:30151010-30151029 | MS.gene76388:CDS | 60.0% | |
| TCCTGGCCGGAAAACCCTCT+TGG | - | chr8.1:30148560-30148579 | None:intergenic | 60.0% | |
| AGCAGGAGCTGCTCGTGGGT+CGG | + | chr8.1:30150328-30150347 | MS.gene76388:CDS | 65.0% | |
| CCTGAGCCAGCATCCTTGCG+AGG | - | chr8.1:30151019-30151038 | None:intergenic | 65.0% | |
| CTCCAGCAGGAGCTGCTCGT+GGG | + | chr8.1:30150324-30150343 | MS.gene76388:CDS | 65.0% | |
| TCTCCAGCAGGAGCTGCTCG+TGG | + | chr8.1:30150323-30150342 | MS.gene76388:CDS | 65.0% | |
| ! | CCCAAGAGGGTTTTCCGGCC+AGG | + | chr8.1:30148556-30148575 | MS.gene76388:intron | 65.0% |
| !! | CCTCGCAAGGATGCTGGCTC+AGG | + | chr8.1:30151016-30151035 | MS.gene76388:CDS | 65.0% |
| GACCCACGAGCAGCTCCTGC+TGG | - | chr8.1:30150329-30150348 | None:intergenic | 70.0% | |
| GCAGGAGCTGCTCGTGGGTC+GGG | + | chr8.1:30150329-30150348 | MS.gene76388:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30147872 | 30151048 | 30147872 | ID=MS.gene76388 |
| chr8.1 | mRNA | 30147872 | 30151048 | 30147872 | ID=MS.gene76388.t1;Parent=MS.gene76388 |
| chr8.1 | exon | 30147872 | 30147881 | 30147872 | ID=MS.gene76388.t1.exon1;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30147872 | 30147881 | 30147872 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30148098 | 30148176 | 30148098 | ID=MS.gene76388.t1.exon2;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30148098 | 30148176 | 30148098 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30148859 | 30148979 | 30148859 | ID=MS.gene76388.t1.exon3;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30148859 | 30148979 | 30148859 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30149163 | 30149303 | 30149163 | ID=MS.gene76388.t1.exon4;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30149163 | 30149303 | 30149163 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30149416 | 30149532 | 30149416 | ID=MS.gene76388.t1.exon5;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30149416 | 30149532 | 30149416 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30150281 | 30150350 | 30150281 | ID=MS.gene76388.t1.exon6;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30150281 | 30150350 | 30150281 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30150478 | 30150551 | 30150478 | ID=MS.gene76388.t1.exon7;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30150478 | 30150551 | 30150478 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| chr8.1 | exon | 30150911 | 30151048 | 30150911 | ID=MS.gene76388.t1.exon8;Parent=MS.gene76388.t1 |
| chr8.1 | CDS | 30150911 | 30151048 | 30150911 | ID=cds.MS.gene76388.t1;Parent=MS.gene76388.t1 |
| Gene Sequence |
| Protein sequence |
