AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054403


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054403.t1 MTR_7g112090 99.482 193 1 0 1 193 1 193 4.70e-143 396
MS.gene054403.t1 MTR_2g034640 93.264 193 13 0 1 193 1 193 1.45e-137 382
MS.gene054403.t1 MTR_4g121860 89.637 193 20 0 1 193 1 193 1.15e-133 372
MS.gene054403.t1 MTR_4g128910 33.523 176 105 1 18 193 15 178 6.39e-28 103
MS.gene054403.t1 MTR_5g016540 32.203 177 104 2 18 192 15 177 2.46e-25 97.1
MS.gene054403.t1 MTR_6g005820 31.073 177 106 2 18 192 15 177 4.83e-24 93.6
MS.gene054403.t1 MTR_5g034130 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene054403.t1 MTR_5g034125 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene054403.t1 MTR_7g109960 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene054403.t1 MTR_1g086480 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene054403.t1 MTR_1g076550 35.088 171 99 2 19 189 16 174 1.46e-23 92.4
MS.gene054403.t1 MTR_4g026950 37.778 135 77 2 22 152 2 133 3.21e-23 91.3
MS.gene054403.t1 MTR_2g022200 37.584 149 81 3 15 151 7 155 3.54e-23 92.0
MS.gene054403.t1 MTR_8g077540 32.164 171 105 1 22 192 18 177 3.54e-23 91.7
MS.gene054403.t1 MTR_5g007810 29.319 191 115 3 3 193 8 178 4.15e-23 91.7
MS.gene054403.t1 MTR_8g077540 32.164 171 105 1 22 192 44 203 9.11e-23 91.3
MS.gene054403.t1 MTR_4g077640 29.319 191 115 3 3 193 8 178 1.43e-22 90.1
MS.gene054403.t1 MTR_5g007820 34.848 132 82 2 20 148 17 147 2.12e-22 89.7
MS.gene054403.t1 MTR_5g015370 36.601 153 95 2 1 152 1 152 2.45e-22 89.4
MS.gene054403.t1 MTR_5g078090 36.296 135 85 1 18 151 17 151 5.98e-22 88.2
MS.gene054403.t1 MTR_5g098820 85.000 40 6 0 39 78 1 40 1.58e-18 78.2
MS.gene054403.t1 MTR_5g098820 82.857 35 6 0 44 78 69 103 1.07e-14 68.2
MS.gene054403.t1 MTR_8g077540 36.458 96 61 0 22 117 18 113 4.09e-16 71.6
MS.gene054403.t1 MTR_5g007840 32.283 127 74 2 20 146 17 131 1.69e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054403.t1 AT4G02080 94.819 193 10 0 1 193 1 193 5.24e-139 386
MS.gene054403.t1 AT3G62560 93.750 192 12 0 1 192 1 192 1.61e-136 379
MS.gene054403.t1 AT1G56330 91.667 192 16 0 1 192 1 192 1.01e-133 372
MS.gene054403.t1 AT1G09180 87.047 193 25 0 1 193 1 193 6.08e-127 355
MS.gene054403.t1 AT1G02620 87.387 111 14 0 83 193 12 122 8.84e-71 211
MS.gene054403.t1 AT2G24765 34.091 176 104 1 18 193 15 178 1.13e-27 103
MS.gene054403.t1 AT3G49870 38.562 153 92 2 1 152 1 152 3.95e-26 99.4
MS.gene054403.t1 AT5G67560 36.424 151 90 2 3 152 7 152 5.03e-25 96.3
MS.gene054403.t1 AT3G49870 40.310 129 76 1 25 152 5 133 1.54e-24 94.7
MS.gene054403.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene054403.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene054403.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene054403.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene054403.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene054403.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene054403.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene054403.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene054403.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene054403.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene054403.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene054403.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G23490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene054403.t1 AT5G14670 31.073 177 106 2 18 192 15 177 6.58e-24 93.6
MS.gene054403.t1 AT2G24765 40.708 113 67 0 18 130 15 127 6.79e-24 92.0
MS.gene054403.t1 AT2G18390 32.749 171 104 1 22 192 18 177 8.53e-24 93.2
MS.gene054403.t1 AT3G49860 37.143 140 87 1 15 153 6 145 1.18e-23 92.8
MS.gene054403.t1 AT5G37680 36.029 136 86 1 18 152 17 152 1.38e-22 90.1
MS.gene054403.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene054403.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene054403.t1 AT3G03120 32.877 146 90 1 3 148 8 145 9.68e-22 88.2
MS.gene054403.t1 AT2G15310 29.189 185 119 1 8 192 5 177 9.86e-22 88.2
MS.gene054403.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene054403.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene054403.t1 AT3G03120 32.061 131 81 1 3 133 8 130 5.19e-20 82.0
MS.gene054403.t1 AT5G37680 38.835 103 63 0 50 152 3 105 2.46e-18 77.8
MS.gene054403.t1 AT1G02430 31.206 141 89 4 18 151 15 154 1.36e-14 68.6
MS.gene054403.t1 AT1G02430 31.206 141 89 4 18 151 15 154 2.30e-14 68.6

Find 44 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 7.4:+4413684 MS.gene054403:CDS
TTCTAGCATCGCTTGGATTA+TGG 0.331495 7.4:+4411533 MS.gene054403:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 7.4:+4413585 MS.gene054403:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 7.4:+4413586 MS.gene054403:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 7.4:+4411562 MS.gene054403:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 7.4:+4413504 MS.gene054403:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 7.4:+4413529 MS.gene054403:CDS
ATCAGATTGCTCGTAGAGTC+TGG 0.419780 7.4:+4412298 MS.gene054403:CDS
CATCAGAAGAGTTGAGTATT+GGG 0.422638 7.4:+4412241 MS.gene054403:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 7.4:-4413568 None:intergenic
GATACTGAGTCGGCTGATGC+TGG 0.450131 7.4:-4412215 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 7.4:+4413707 MS.gene054403:CDS
TACGGGGTTCTAGCATCGCT+TGG 0.473883 7.4:+4411526 MS.gene054403:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 7.4:+4413708 MS.gene054403:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 7.4:+4412240 MS.gene054403:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 7.4:+4413607 MS.gene054403:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 7.4:+4413685 MS.gene054403:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 7.4:-4413600 None:intergenic
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 7.4:-4413534 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 7.4:+4413429 MS.gene054403:intron
CTTCACCACTGGCAAGGGTA+AGG 0.533342 7.4:+4413618 MS.gene054403:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 7.4:-4413535 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 7.4:+4413697 MS.gene054403:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 7.4:-4413507 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 7.4:+4411577 MS.gene054403:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 7.4:+4413612 MS.gene054403:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 7.4:+4413613 MS.gene054403:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 7.4:+4413691 MS.gene054403:CDS
CTGGAAAGATTACTATGCCC+AGG 0.565879 7.4:+4412317 MS.gene054403:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 7.4:+4413447 MS.gene054403:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 7.4:+4413651 MS.gene054403:CDS
GCTTGGATTATGGCAGAAAG+AGG 0.588367 7.4:+4411543 MS.gene054403:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 7.4:-4412237 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 7.4:-4412225 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 7.4:-4413668 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 7.4:-4413667 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 7.4:-4411608 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 7.4:+4411612 MS.gene054403:CDS
GTAACGCAATTCGTCTTCTG+AGG 0.630635 7.4:-4413578 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 7.4:-4413623 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 7.4:+4413420 MS.gene054403:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 7.4:+4413654 MS.gene054403:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 7.4:-4413663 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 7.4:-4411605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATGATAATAACT+GGG - chr7.4:4411653-4411672 None:intergenic 10.0%
!! ATATCTTAATCATGAAAATT+TGG + chr7.4:4412397-4412416 MS.gene054403:intron 15.0%
!! GTAATAATAATGATAATAAC+TGG - chr7.4:4411654-4411673 None:intergenic 15.0%
!! AGACATAATATAATATAGGA+AGG - chr7.4:4412434-4412453 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG - chr7.4:4413272-4413291 None:intergenic 20.0%
!! TCCAAGACATAATATAATAT+AGG - chr7.4:4412438-4412457 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG + chr7.4:4412434-4412453 MS.gene054403:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG + chr7.4:4412270-4412289 MS.gene054403:CDS 20.0%
!!! ATAGAATATTTTGTAGTCAA+AGG + chr7.4:4411741-4411760 MS.gene054403:intron 20.0%
! ATACAATGGATAGAATAGAA+GGG - chr7.4:4412923-4412942 None:intergenic 25.0%
! ATTATATTATGTCTTGGACT+TGG + chr7.4:4412440-4412459 MS.gene054403:intron 25.0%
! TAAACATATCTCAACAAAAG+TGG - chr7.4:4411951-4411970 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG - chr7.4:4412924-4412943 None:intergenic 25.0%
! TCTTATGTTCTTTACCATAA+TGG + chr7.4:4412601-4412620 MS.gene054403:intron 25.0%
! TTATAAGCTACTGTATACAA+TGG - chr7.4:4412937-4412956 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG + chr7.4:4412176-4412195 MS.gene054403:intron 25.0%
!! TATTACCGATATTGTTCTTT+TGG + chr7.4:4411668-4411687 MS.gene054403:intron 25.0%
!! TCAAAGTCAAATTGATTCAA+CGG - chr7.4:4412994-4413013 None:intergenic 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG + chr7.4:4412271-4412290 MS.gene054403:CDS 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG + chr7.4:4412269-4412288 MS.gene054403:CDS 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG - chr7.4:4413549-4413568 None:intergenic 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG + chr7.4:4412469-4412488 MS.gene054403:intron 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG + chr7.4:4411715-4411734 MS.gene054403:intron 25.0%
AAAATACTACTTCATGTTCG+AGG - chr7.4:4413128-4413147 None:intergenic 30.0%
AAACCATTAGAAGGATTTAG+AGG + chr7.4:4412702-4412721 MS.gene054403:intron 30.0%
AAATGACTGTGTTTCCATTA+TGG - chr7.4:4412618-4412637 None:intergenic 30.0%
AACACACCAAAACAAGTTAA+GGG - chr7.4:4411984-4412003 None:intergenic 30.0%
AGAAACATTATACCAAGACT+CGG - chr7.4:4412162-4412181 None:intergenic 30.0%
AGATTCTAAGCCAATATCTT+AGG - chr7.4:4412548-4412567 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG + chr7.4:4413295-4413314 MS.gene054403:intron 30.0%
CCATTCCAAAAGAACAATAT+CGG - chr7.4:4411676-4411695 None:intergenic 30.0%
TACATATACTCTACTTGCTT+TGG + chr7.4:4413080-4413099 MS.gene054403:intron 30.0%
TATAGAACTGCCTAAGATAT+TGG + chr7.4:4412535-4412554 MS.gene054403:intron 30.0%
TCTCAGTTAAATATTGAGCA+GGG - chr7.4:4413221-4413240 None:intergenic 30.0%
TGAGATATGTTTATCCAAAC+AGG + chr7.4:4411958-4411977 MS.gene054403:intron 30.0%
TGCAGTATTGTGAAGAAAAT+GGG + chr7.4:4413685-4413704 MS.gene054403:CDS 30.0%
TGGTTTATGATAGAACACTA+TGG + chr7.4:4412746-4412765 MS.gene054403:intron 30.0%
TTCTCAGTTAAATATTGAGC+AGG - chr7.4:4413222-4413241 None:intergenic 30.0%
TTGTAAGAGAAACCATTAGA+AGG + chr7.4:4412693-4412712 MS.gene054403:intron 30.0%
TTTACACTTATTACTGTCAG+CGG + chr7.4:4411775-4411794 MS.gene054403:intron 30.0%
! AAACCATCAAGTTTGTTTCT+CGG - chr7.4:4413185-4413204 None:intergenic 30.0%
! CAATGAGTTGGATTCAAATA+TGG + chr7.4:4412726-4412745 MS.gene054403:intron 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG + chr7.4:4413471-4413490 MS.gene054403:CDS 30.0%
!! ACAAAAAAGTATTGAAGGCA+TGG - chr7.4:4412354-4412373 None:intergenic 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG + chr7.4:4413691-4413710 MS.gene054403:CDS 30.0%
!! TAGCCACAAAAAAGTATTGA+AGG - chr7.4:4412359-4412378 None:intergenic 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG + chr7.4:4413708-4413727 MS.gene054403:CDS 30.0%
!!! ATGCCTTCAATACTTTTTTG+TGG + chr7.4:4412353-4412372 MS.gene054403:intron 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG + chr7.4:4411678-4411697 MS.gene054403:intron 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG + chr7.4:4412272-4412291 MS.gene054403:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+GGG + chr7.4:4412273-4412292 MS.gene054403:CDS 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG + chr7.4:4411508-4411527 MS.gene054403:CDS 30.0%
ACATCAGAAGAGTTGAGTAT+TGG + chr7.4:4412240-4412259 MS.gene054403:CDS 35.0%
AGAAACCAGAAAAGATTACG+TGG - chr7.4:4412089-4412108 None:intergenic 35.0%
AGAGCCAGAAATGTCTTATA+AGG - chr7.4:4413302-4413321 None:intergenic 35.0%
ATACTCAACTCTTCTGATGT+CGG - chr7.4:4412240-4412259 None:intergenic 35.0%
ATATACTCTACTTGCTTTGG+TGG + chr7.4:4413083-4413102 MS.gene054403:intron 35.0%
ATATCTTTATCTCCGAGTCT+TGG + chr7.4:4412147-4412166 MS.gene054403:intron 35.0%
ATGAAAATTTGGATGCCAGT+AGG + chr7.4:4412408-4412427 MS.gene054403:intron 35.0%
CAACACACCAAAACAAGTTA+AGG - chr7.4:4411985-4412004 None:intergenic 35.0%
CATCAGAAGAGTTGAGTATT+GGG + chr7.4:4412241-4412260 MS.gene054403:CDS 35.0%
GAGGCTAAGATCTTATTCTT+AGG + chr7.4:4411562-4411581 MS.gene054403:CDS 35.0%
GTGCAGTATTGTGAAGAAAA+TGG + chr7.4:4413684-4413703 MS.gene054403:CDS 35.0%
TAACCGAGAAACAAACTTGA+TGG + chr7.4:4413179-4413198 MS.gene054403:intron 35.0%
TAATCAGATGTGCACATTCT+AGG + chr7.4:4413033-4413052 MS.gene054403:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG - chr7.4:4412426-4412445 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG + chr7.4:4413504-4413523 MS.gene054403:CDS 35.0%
TGACCTCTAAATCCTTCTAA+TGG - chr7.4:4412708-4412727 None:intergenic 35.0%
TTGCCAATGATTCATCAGAA+AGG - chr7.4:4413510-4413529 None:intergenic 35.0%
! AAACTTGATGGTTTGGACTT+TGG + chr7.4:4413191-4413210 MS.gene054403:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG + chr7.4:4413184-4413203 MS.gene054403:intron 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG + chr7.4:4413010-4413029 MS.gene054403:intron 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG + chr7.4:4413697-4413716 MS.gene054403:CDS 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG - chr7.4:4413543-4413562 None:intergenic 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG + chr7.4:4411673-4411692 MS.gene054403:intron 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG + chr7.4:4413707-4413726 MS.gene054403:CDS 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG + chr7.4:4412473-4412492 MS.gene054403:intron 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG + chr7.4:4411509-4411528 MS.gene054403:CDS 35.0%
AAACAAGTTAAGGGCCTGTT+TGG - chr7.4:4411975-4411994 None:intergenic 40.0%
AACTGAGAAACATTACGTGC+TGG + chr7.4:4413358-4413377 MS.gene054403:intron 40.0%
AGACGAATTGCGTTACCATT+TGG + chr7.4:4413585-4413604 MS.gene054403:CDS 40.0%
ATCATGAGTTGTTGCAATGC+AGG + chr7.4:4413408-4413427 MS.gene054403:intron 40.0%
CAACGGCAGAAATGATTCAA+CGG - chr7.4:4412977-4412996 None:intergenic 40.0%
GACGAATTGCGTTACCATTT+GGG + chr7.4:4413586-4413605 MS.gene054403:CDS 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr7.4:4412714-4412733 MS.gene054403:intron 40.0%
GTCTTTGAGCATATGAAGCA+AGG - chr7.4:4411611-4411630 None:intergenic 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG + chr7.4:4413477-4413496 MS.gene054403:CDS 40.0%
TGTTTCCAAGGACAAGGAAA+GGG - chr7.4:4413537-4413556 None:intergenic 40.0%
TTCTAGCATCGCTTGGATTA+TGG + chr7.4:4411533-4411552 MS.gene054403:CDS 40.0%
TTGTTTCCAAGGACAAGGAA+AGG - chr7.4:4413538-4413557 None:intergenic 40.0%
TTTGAGCATATGAAGCAAGG+TGG - chr7.4:4411608-4411627 None:intergenic 40.0%
! CTTGGTTGATGCTTATGACA+AGG + chr7.4:4413447-4413466 MS.gene054403:CDS 40.0%
! TTCGACCACGTAATCTTTTC+TGG + chr7.4:4412081-4412100 MS.gene054403:intron 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG + chr7.4:4411975-4411994 MS.gene054403:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG + chr7.4:4411989-4412008 MS.gene054403:intron 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG + chr7.4:4411510-4411529 MS.gene054403:CDS 40.0%
AATGTCCCTTTCCTTGTCCT+TGG + chr7.4:4413529-4413548 MS.gene054403:CDS 45.0%
ACATGAATACCTCCATGGGT+CGG - chr7.4:4413666-4413685 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG - chr7.4:4413671-4413690 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG + chr7.4:4412298-4412317 MS.gene054403:CDS 45.0%
ATTTACCTTACCCTTGCCAG+TGG - chr7.4:4413626-4413645 None:intergenic 45.0%
CTGCACATGAATACCTCCAT+GGG - chr7.4:4413670-4413689 None:intergenic 45.0%
CTGGAAAGATTACTATGCCC+AGG + chr7.4:4412317-4412336 MS.gene054403:CDS 45.0%
GCATGGAAAAAGAGAGACCT+GGG - chr7.4:4412337-4412356 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG + chr7.4:4411612-4411631 MS.gene054403:CDS 45.0%
GCTTGGATTATGGCAGAAAG+AGG + chr7.4:4411543-4411562 MS.gene054403:CDS 45.0%
GTAACGCAATTCGTCTTCTG+AGG - chr7.4:4413581-4413600 None:intergenic 45.0%
TCTGATGTCGGATACTGAGT+CGG - chr7.4:4412228-4412247 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG - chr7.4:4413603-4413622 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7.4:4412795-4412814 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7.4:4412796-4412815 None:intergenic 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG + chr7.4:4411786-4411805 MS.gene054403:intron 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG - chr7.4:4411599-4411618 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG + chr7.4:4412478-4412497 MS.gene054403:intron 45.0%
ACTAAGTGGGGTCAGGTACA+TGG - chr7.4:4412783-4412802 None:intergenic 50.0%
AGACTCAAATGTCCGACCCA+TGG + chr7.4:4413651-4413670 MS.gene054403:CDS 50.0%
AGCAACTTCACCACTGGCAA+GGG + chr7.4:4413613-4413632 MS.gene054403:CDS 50.0%
ATGTACCTGACCCCACTTAG+TGG + chr7.4:4412782-4412801 MS.gene054403:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7.4:4412794-4412813 MS.gene054403:intron 50.0%
GGCATGGAAAAAGAGAGACC+TGG - chr7.4:4412338-4412357 None:intergenic 50.0%
GGTAGATGCAGTGGTCTACT+TGG + chr7.4:4413429-4413448 MS.gene054403:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr7.4:4412789-4412808 MS.gene054403:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG + chr7.4:4413420-4413439 MS.gene054403:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG + chr7.4:4412783-4412802 MS.gene054403:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG - chr7.4:4412790-4412809 None:intergenic 50.0%
TTCTTAGGTCTCGACAACGC+CGG + chr7.4:4411577-4411596 MS.gene054403:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7.4:4412797-4412816 None:intergenic 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG - chr7.4:4413571-4413590 None:intergenic 50.0%
CTCAAATGTCCGACCCATGG+AGG + chr7.4:4413654-4413673 MS.gene054403:CDS 55.0%
CTTCACCACTGGCAAGGGTA+AGG + chr7.4:4413618-4413637 MS.gene054403:CDS 55.0%
GAGCAACTTCACCACTGGCA+AGG + chr7.4:4413612-4413631 MS.gene054403:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG - chr7.4:4412218-4412237 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG + chr7.4:4413607-4413626 MS.gene054403:CDS 55.0%
! TACGGGGTTCTAGCATCGCT+TGG + chr7.4:4411526-4411545 MS.gene054403:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 4411505 4413750 4411505 ID=MS.gene054403
chr7.4 mRNA 4411505 4413750 4411505 ID=MS.gene054403.t1;Parent=MS.gene054403
chr7.4 exon 4411505 4411633 4411505 ID=MS.gene054403.t1.exon1;Parent=MS.gene054403.t1
chr7.4 CDS 4411505 4411633 4411505 ID=cds.MS.gene054403.t1;Parent=MS.gene054403.t1
chr7.4 exon 4412207 4412338 4412207 ID=MS.gene054403.t1.exon2;Parent=MS.gene054403.t1
chr7.4 CDS 4412207 4412338 4412207 ID=cds.MS.gene054403.t1;Parent=MS.gene054403.t1
chr7.4 exon 4413430 4413750 4413430 ID=MS.gene054403.t1.exon3;Parent=MS.gene054403.t1
chr7.4 CDS 4413430 4413750 4413430 ID=cds.MS.gene054403.t1;Parent=MS.gene054403.t1
Gene Sequence

>MS.gene054403

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGGTTTGTTCTTCAATTTCCCAGTTATTATCATTATTATTACCGATATTGTTCTTTTGGAATGGAACGGATCTGTGATCTTATTTACTGTTGATAATGTTTTGTGGTTAATAGAATATTTTGTAGTCAAAGGAGTTTATGATTTTTACACTTATTACTGTCAGCGGAGTTTTCTAGGATCAATATGATATATTATACATGTTTCTGAGAAATTTCGCAATTGTGTTACTTAGATACTCAATCAACATAATTTCATTTGCTCTTAGTTTAAAATTATTTCGCAGTTTTCTAAAATATTGATTAATTTCTCAGTTTTTCCACTTTTGTTGAGATATGTTTATCCAAACAGGCCCTTAACTTGTTTTGGTGTGTTGCTCTTGGTCTCTTATCTTGACATCTAGCATCTGTTTTAAAATTTTATTGTGATTGCTCATATCTGTATTATTTTGTTTCGACCACGTAATCTTTTCTGGTTTCTGCAAGCAATGCATTTTGATAGTTAGCAAGCGTGTGTCTATATCTTTATCTCCGAGTCTTGGTATAATGTTTCTTTTATGATGAGAATTGGTTTTGCAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCTCTCTTTTTCCATGCCTTCAATACTTTTTTGTGGCTAGTGTAGCAAAGTGAGAGAATATCTTAATCATGAAAATTTGGATGCCAGTAGGCCTTCCTATATTATATTATGTCTTGGACTTGGAAACATGTAACTTTATTTTGTTTGTGTGGCTGGACTGGCTAATTTGTGTGTTTATCAGTTAGTGATTTCAGATATAGAACTGCCTAAGATATTGGCTTAGAATCTACAAACAAATTCTAACAGTCATGAAGATTTTATTCTTATGTTCTTTACCATAATGGAAACACAGTCATTTAGTTTTTAAAAAAGTAAATAAATTATTGACAAATTTTTAGTTTTTAAAAATATTATTGTAAGAGAAACCATTAGAAGGATTTAGAGGTCAATGAGTTGGATTCAAATATGGTTTATGATAGAACACTATGGCGTAATTTGATCCATGTACCTGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTAAAATATTATTGTAAAAAATAACTACTATCTTGTTGCAGAATGTTCTTATATCTAACAAATTACATGAATACAGCTTAAGCTAAAGATTTATGCCCTTCTATTCTATCCATTGTATACAGTAGCTTATAATTTATAAGACATTTCTGCCGTTGAATCATTTCTGCCGTTGAATCAATTTGACTTTGAGTTTGCTTGTTCAACTAGGTAATCAGATGTGCACATTCTAGGAAGAATTATTTCATAAGAGATTAATACATATACTCTACTTGCTTTGGTGGTAGAATCTAATTCAATGCACCTCGAACATGAAGTAGTATTTTGTAGCTTTGTTACTACAAAAGTTCAATGTTTTAACCGAGAAACAAACTTGATGGTTTGGACTTTGGTGTTCCCTGCTCAATATTTAACTGAGAAACAAACATGATGAGTTGCTGATAGCTGCCTTTTCATTTTATACTATTGCTTACAGTACCTTATAAGACATTTCTGGCTCTGAATCAATTTCAACTTAGTAACTTGTTCAATATTTTAACTGAGAAACATTACGTGCTGGTGCTCATTATTTTTTTACTTCATTGTGATCATGAGTTGTTGCAATGCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>MS.gene054403.t1

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK