Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76469.t1 | XP_003629355.1 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 1.10E-146 | 529.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76469.t1 | Q9FN50 | 37.3 | 244 | 139 | 6 | 44 | 281 | 22 | 257 | 1.8e-31 | 137.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76469.t1 | G7LD00 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 8.1e-147 | 529.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76469 | MS.gene033008 | PPI |
| MS.gene76469 | MS.gene68971 | PPI |
| MS.gene76469 | MS.gene044507 | PPI |
| MS.gene76469 | MS.gene038794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76469.t1 | MTR_8g076220 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 560 |
| MS.gene76469.t1 | MTR_4g112540 | 39.196 | 199 | 117 | 3 | 85 | 281 | 54 | 250 | 4.10e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76469.t1 | AT3G51140 | 63.241 | 253 | 86 | 4 | 30 | 281 | 31 | 277 | 2.75e-112 | 325 |
| MS.gene76469.t1 | AT3G51140 | 60.099 | 203 | 76 | 3 | 30 | 231 | 31 | 229 | 3.06e-82 | 247 |
| MS.gene76469.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 4.91e-44 | 150 |
| MS.gene76469.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 4.91e-44 | 150 |
Find 65 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAACAATGATTGTATC+TGG | 0.187129 | 8.1:+31241279 | None:intergenic |
| CGAGGCAACGAGGAGGTAAT+TGG | 0.227784 | 8.1:-31241329 | None:intergenic |
| AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8.1:+31243380 | MS.gene76469:CDS |
| GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8.1:-31244035 | None:intergenic |
| GCCTCGAATCACGCCGTGTT+CGG | 0.266223 | 8.1:+31241346 | MS.gene76469:CDS |
| GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8.1:+31243381 | MS.gene76469:CDS |
| CTTATTCCAAGTCGTTTATA+CGG | 0.293016 | 8.1:-31242987 | None:intergenic |
| GGATCGCTCACATTAATTCT+TGG | 0.335746 | 8.1:-31242966 | None:intergenic |
| CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8.1:+31243304 | MS.gene76469:CDS |
| CCTCGAATCACGCCGTGTTC+GGG | 0.353082 | 8.1:+31241347 | MS.gene76469:CDS |
| GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8.1:-31243052 | None:intergenic |
| GAGGCAACGAGGAGGTAATT+GGG | 0.389953 | 8.1:-31241328 | None:intergenic |
| GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8.1:+31243992 | MS.gene76469:CDS |
| CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8.1:+31243184 | MS.gene76469:CDS |
| CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8.1:-31243193 | None:intergenic |
| GATCGCTCACATTAATTCTT+GGG | 0.413368 | 8.1:-31242965 | None:intergenic |
| CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8.1:+31244043 | MS.gene76469:CDS |
| CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8.1:-31244111 | None:intergenic |
| TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8.1:+31244025 | MS.gene76469:CDS |
| AGTGCTATGGGTGCTTCATT+TGG | 0.458480 | 8.1:+31241595 | MS.gene76469:CDS |
| CCCGAACACGGCGTGATTCG+AGG | 0.471269 | 8.1:-31241347 | None:intergenic |
| TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8.1:-31244030 | None:intergenic |
| TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8.1:-31243192 | None:intergenic |
| CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8.1:-31243303 | None:intergenic |
| CATCGACCTATCTTATATGA+AGG | 0.484004 | 8.1:+31244105 | MS.gene76469:CDS |
| AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8.1:-31243299 | None:intergenic |
| TCAATTGGTCAGAAGTGCTA+TGG | 0.489625 | 8.1:+31241582 | MS.gene76469:CDS |
| TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8.1:+31243050 | MS.gene76469:CDS |
| TGATAGACGACAAGTTCAAT+TGG | 0.501549 | 8.1:+31241567 | MS.gene76469:CDS |
| GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8.1:-31244029 | None:intergenic |
| TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8.1:+31243360 | MS.gene76469:CDS |
| ATATAACAATGATTGTATCT+GGG | 0.516139 | 8.1:+31241280 | None:intergenic |
| TGGGCATACCTTTCCACACT+GGG | 0.516470 | 8.1:-31241417 | None:intergenic |
| GACTCAATTGAATCTACACT+TGG | 0.523228 | 8.1:-31243080 | None:intergenic |
| TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8.1:-31243230 | None:intergenic |
| GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8.1:-31243314 | None:intergenic |
| GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8.1:+31243290 | MS.gene76469:CDS |
| TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8.1:+31244034 | MS.gene76469:CDS |
| GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8.1:-31244050 | None:intergenic |
| AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8.1:-31241327 | None:intergenic |
| CAATTGGTCAGAAGTGCTAT+GGG | 0.571474 | 8.1:+31241583 | MS.gene76469:CDS |
| CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8.1:+31243348 | MS.gene76469:CDS |
| AGCGATCCGTATAAACGACT+TGG | 0.578474 | 8.1:+31242981 | MS.gene76469:CDS |
| TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8.1:+31243291 | MS.gene76469:CDS |
| CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8.1:+31244026 | MS.gene76469:CDS |
| TTGGGCATACCTTTCCACAC+TGG | 0.594896 | 8.1:-31241418 | None:intergenic |
| CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8.1:-31244026 | None:intergenic |
| TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8.1:+31244033 | MS.gene76469:CDS |
| AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8.1:+31243024 | MS.gene76469:CDS |
| CAGCGTTTCCCAGTGTGGAA+AGG | 0.603927 | 8.1:+31241409 | MS.gene76469:CDS |
| CGATTCGTTCAGGCTGTCAG+AGG | 0.606356 | 8.1:+31243194 | MS.gene76469:CDS |
| AAGTGTAGATTCAATTGAGT+CGG | 0.607184 | 8.1:+31243082 | MS.gene76469:CDS |
| TAAACGACTTGGAATAAGCA+AGG | 0.615337 | 8.1:+31242992 | MS.gene76469:CDS |
| AATTACTGACACCATCAAGA+AGG | 0.623704 | 8.1:-31244003 | None:intergenic |
| GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8.1:+31243286 | MS.gene76469:CDS |
| TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8.1:+31243051 | MS.gene76469:CDS |
| AAGGACAGCGTTTCCCAGTG+TGG | 0.653221 | 8.1:+31241404 | MS.gene76469:CDS |
| TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8.1:-31243288 | None:intergenic |
| GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8.1:+31241619 | MS.gene76469:CDS |
| TGGCTGGTAAATGTATACAA+AGG | 0.664469 | 8.1:+31241385 | MS.gene76469:CDS |
| AAAATGACATGACCCGAACA+CGG | 0.665683 | 8.1:-31241359 | None:intergenic |
| ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8.1:+31241288 | MS.gene76469:CDS |
| GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8.1:-31241326 | None:intergenic |
| CGGCGTGATTCGAGGCAACG+AGG | 0.707572 | 8.1:-31241339 | None:intergenic |
| CGTGATTCGAGGCAACGAGG+AGG | 0.732059 | 8.1:-31241336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCATGATACATAAAA+TGG | + | chr8.1:31241673-31241692 | MS.gene76469:intron | 15.0% |
| !! | TTTAAAAAATCCAAAACAAA+CGG | + | chr8.1:31243835-31243854 | MS.gene76469:intron | 15.0% |
| !!! | AAAAAAAATAGATTTTGAGT+TGG | + | chr8.1:31243541-31243560 | MS.gene76469:intron | 15.0% |
| !!! | AGTTTTTATAATGAATATAG+TGG | - | chr8.1:31243237-31243256 | None:intergenic | 15.0% |
| !!! | GATAACATATGTTTTATTAT+GGG | + | chr8.1:31244079-31244098 | MS.gene76469:CDS | 15.0% |
| !!! | GTTTAGAAAAAAATAGATTT+TGG | + | chr8.1:31243682-31243701 | MS.gene76469:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAACATA+AGG | - | chr8.1:31243679-31243698 | None:intergenic | 15.0% |
| !!! | TGATAACATATGTTTTATTA+TGG | + | chr8.1:31244078-31244097 | MS.gene76469:CDS | 15.0% |
| !! | ACACTAAACATTAAATAAGT+GGG | - | chr8.1:31242637-31242656 | None:intergenic | 20.0% |
| !! | AGTAAATCTATTGATATGAA+AGG | - | chr8.1:31242191-31242210 | None:intergenic | 20.0% |
| !! | ATTCATTATAAAAACTTCAC+TGG | + | chr8.1:31243241-31243260 | MS.gene76469:CDS | 20.0% |
| !! | TATGAATAACTATCAAGAAA+GGG | - | chr8.1:31242604-31242623 | None:intergenic | 20.0% |
| !! | TCAAAAAGTAATGATTCATT+GGG | - | chr8.1:31241439-31241458 | None:intergenic | 20.0% |
| !! | TGACATCAACAAAAAAATTA+GGG | + | chr8.1:31243157-31243176 | MS.gene76469:CDS | 20.0% |
| !! | TTAAAAAATCCAAAACAAAC+GGG | + | chr8.1:31243836-31243855 | MS.gene76469:intron | 20.0% |
| !! | TTATGAATAACTATCAAGAA+AGG | - | chr8.1:31242605-31242624 | None:intergenic | 20.0% |
| !! | TTCAAAAAGTAATGATTCAT+TGG | - | chr8.1:31241440-31241459 | None:intergenic | 20.0% |
| !! | TTCATATCAATAGATTTACT+GGG | + | chr8.1:31242191-31242210 | MS.gene76469:intron | 20.0% |
| !! | TTGACATCAACAAAAAAATT+AGG | + | chr8.1:31243156-31243175 | MS.gene76469:CDS | 20.0% |
| !! | TTTCATATCAATAGATTTAC+TGG | + | chr8.1:31242190-31242209 | MS.gene76469:intron | 20.0% |
| !!! | AAATTAGGAATCAATTTTCT+TGG | + | chr8.1:31241984-31242003 | MS.gene76469:intron | 20.0% |
| !!! | ATTATTGTAGAAGAAAGTAT+AGG | + | chr8.1:31241953-31241972 | MS.gene76469:intron | 20.0% |
| !!! | CTTATTGTTGGTTTTATATA+AGG | - | chr8.1:31242892-31242911 | None:intergenic | 20.0% |
| !!! | TTTATAATGAATATAGTGGA+TGG | - | chr8.1:31243233-31243252 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATGTCAATTTTT+GGG | - | chr8.1:31243151-31243170 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGATGTCAATTTT+TGG | - | chr8.1:31243152-31243171 | None:intergenic | 20.0% |
| ! | AAATGATTCTGTGATCATTA+TGG | + | chr8.1:31241773-31241792 | MS.gene76469:intron | 25.0% |
| ! | AAGGTGATTCAAATATCATA+CGG | - | chr8.1:31242873-31242892 | None:intergenic | 25.0% |
| ! | ATGAATAACTATCAAGAAAG+GGG | - | chr8.1:31242603-31242622 | None:intergenic | 25.0% |
| ! | ATTCAAATATCATACGGATA+AGG | - | chr8.1:31242867-31242886 | None:intergenic | 25.0% |
| ! | CACACTAAACATTAAATAAG+TGG | - | chr8.1:31242638-31242657 | None:intergenic | 25.0% |
| ! | GTTAAGCTATAACTTATTGT+TGG | - | chr8.1:31242904-31242923 | None:intergenic | 25.0% |
| ! | TAAAATGGATCTAGTAAAAC+TGG | + | chr8.1:31241688-31241707 | MS.gene76469:intron | 25.0% |
| ! | TAAAATGTTCACATATGACA+TGG | - | chr8.1:31242718-31242737 | None:intergenic | 25.0% |
| ! | TACAAAACATCAATCAAACA+AGG | - | chr8.1:31242121-31242140 | None:intergenic | 25.0% |
| ! | TTAAAAGAACAAAAGCAGAA+AGG | - | chr8.1:31242229-31242248 | None:intergenic | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | chr8.1:31243715-31243734 | MS.gene76469:intron | 25.0% |
| !!! | CATTTTGATAGCATAACTTA+GGG | + | chr8.1:31243500-31243519 | MS.gene76469:intron | 25.0% |
| !!! | GAATCATTACTTTTTGAACT+TGG | + | chr8.1:31241442-31241461 | MS.gene76469:intron | 25.0% |
| !!! | GTATGTTTTCTGAAACAATA+CGG | + | chr8.1:31241726-31241745 | MS.gene76469:intron | 25.0% |
| !!! | TAGATTACATTTTTTTCCTG+TGG | + | chr8.1:31241819-31241838 | MS.gene76469:intron | 25.0% |
| !!! | TATGTTTTCTGAAACAATAC+GGG | + | chr8.1:31241727-31241746 | MS.gene76469:intron | 25.0% |
| !!! | TCATTTTGATAGCATAACTT+AGG | + | chr8.1:31243499-31243518 | MS.gene76469:intron | 25.0% |
| AAGTGTAGATTCAATTGAGT+CGG | + | chr8.1:31243082-31243101 | MS.gene76469:CDS | 30.0% | |
| AATGTCATACAATGAGAACA+AGG | - | chr8.1:31243863-31243882 | None:intergenic | 30.0% | |
| AGAGAGATTCTGATATCATA+AGG | - | chr8.1:31242569-31242588 | None:intergenic | 30.0% | |
| AGCTGAGAGAAAAATCATAA+AGG | - | chr8.1:31243909-31243928 | None:intergenic | 30.0% | |
| ATGTCATACAATGAGAACAA+GGG | - | chr8.1:31243862-31243881 | None:intergenic | 30.0% | |
| CAACGTATTTCGTATATGAT+CGG | + | chr8.1:31243348-31243367 | MS.gene76469:CDS | 30.0% | |
| CAGTTAAACAACTGCTTTAT+GGG | + | chr8.1:31242382-31242401 | MS.gene76469:intron | 30.0% | |
| CATGTGAAAACTTAACAAGA+GGG | - | chr8.1:31242538-31242557 | None:intergenic | 30.0% | |
| CTTATTCCAAGTCGTTTATA+CGG | - | chr8.1:31242990-31243009 | None:intergenic | 30.0% | |
| GTAGTTAGTTAGTTAGGATT+TGG | + | chr8.1:31242006-31242025 | MS.gene76469:intron | 30.0% | |
| TAATCTAGGAGATGAAAAAC+TGG | - | chr8.1:31241542-31241561 | None:intergenic | 30.0% | |
| TATCAATAGATTTACTGGGA+CGG | + | chr8.1:31242195-31242214 | MS.gene76469:intron | 30.0% | |
| TCAGTTAAACAACTGCTTTA+TGG | + | chr8.1:31242381-31242400 | MS.gene76469:intron | 30.0% | |
| TCATGTGAAAACTTAACAAG+AGG | - | chr8.1:31242539-31242558 | None:intergenic | 30.0% | |
| TGAACTTGGAACTTTATGTA+AGG | + | chr8.1:31241456-31241475 | MS.gene76469:intron | 30.0% | |
| TGAATAACTATCAAGAAAGG+GGG | - | chr8.1:31242602-31242621 | None:intergenic | 30.0% | |
| TTCTTCGTCTTCATAATTGT+TGG | + | chr8.1:31241875-31241894 | MS.gene76469:intron | 30.0% | |
| ! | ACAATTTTCAACTAAACCAG+AGG | - | chr8.1:31242772-31242791 | None:intergenic | 30.0% |
| ! | AGAAGAAAGTATAGGAGTAT+GGG | + | chr8.1:31241961-31241980 | MS.gene76469:intron | 30.0% |
| ! | AGTTTCTTTTTCTTGACATG+TGG | + | chr8.1:31242339-31242358 | MS.gene76469:intron | 30.0% |
| ! | CAATTTTCAACTAAACCAGA+GGG | - | chr8.1:31242771-31242790 | None:intergenic | 30.0% |
| ! | GTTTCTTTTTCTTGACATGT+GGG | + | chr8.1:31242340-31242359 | MS.gene76469:intron | 30.0% |
| ! | TAGAAGAAAGTATAGGAGTA+TGG | + | chr8.1:31241960-31241979 | MS.gene76469:intron | 30.0% |
| ! | TTCTTGGTAGTTAGTTAGTT+AGG | + | chr8.1:31242000-31242019 | MS.gene76469:intron | 30.0% |
| ! | TTTCTTTTTCTTGACATGTG+GGG | + | chr8.1:31242341-31242360 | MS.gene76469:intron | 30.0% |
| !! | AAATGAAAAGTGCTCAACAA+TGG | - | chr8.1:31243485-31243504 | None:intergenic | 30.0% |
| !! | AAGGTTCATGTTTTGTTGAA+TGG | + | chr8.1:31241475-31241494 | MS.gene76469:intron | 30.0% |
| !! | CGTCTATCACATTTTAATCT+AGG | - | chr8.1:31241556-31241575 | None:intergenic | 30.0% |
| !! | GGGAAAATTGTTTTTCAGTT+TGG | + | chr8.1:31242313-31242332 | MS.gene76469:intron | 30.0% |
| !!! | GTGGTTGGTTTTTTTGTTTT+AGG | + | chr8.1:31242032-31242051 | MS.gene76469:intron | 30.0% |
| AAAAGATACTCTCTTCACAC+TGG | - | chr8.1:31242167-31242186 | None:intergenic | 35.0% | |
| AAGAAGAAATTCAAGCAGCT+AGG | + | chr8.1:31243024-31243043 | MS.gene76469:CDS | 35.0% | |
| AATAACTATCAAGAAAGGGG+GGG | - | chr8.1:31242600-31242619 | None:intergenic | 35.0% | |
| AATTACTGACACCATCAAGA+AGG | - | chr8.1:31244006-31244025 | None:intergenic | 35.0% | |
| AGGATAAGAGCTTTGCTTTA+TGG | + | chr8.1:31243380-31243399 | MS.gene76469:CDS | 35.0% | |
| ATGTGAAAACTTAACACGAG+AGG | - | chr8.1:31242480-31242499 | None:intergenic | 35.0% | |
| ATTGTTAGTGCAATACAGAG+AGG | - | chr8.1:31242827-31242846 | None:intergenic | 35.0% | |
| CTGAGAAGCTGAACTAAAAT+AGG | + | chr8.1:31241901-31241920 | MS.gene76469:intron | 35.0% | |
| CTGTGATCATTATGGATGTT+TGG | + | chr8.1:31241781-31241800 | MS.gene76469:intron | 35.0% | |
| CTGTGCACAATAAGGATTAA+AGG | - | chr8.1:31242073-31242092 | None:intergenic | 35.0% | |
| CTTTAATCCTTATTGTGCAC+AGG | + | chr8.1:31242071-31242090 | MS.gene76469:intron | 35.0% | |
| GAATAACTATCAAGAAAGGG+GGG | - | chr8.1:31242601-31242620 | None:intergenic | 35.0% | |
| GACTCAATTGAATCTACACT+TGG | - | chr8.1:31243083-31243102 | None:intergenic | 35.0% | |
| GATATGTCAAATGATTCTGC+TGG | + | chr8.1:31241619-31241638 | MS.gene76469:CDS | 35.0% | |
| GATCGCTCACATTAATTCTT+GGG | - | chr8.1:31242968-31242987 | None:intergenic | 35.0% | |
| GCTTATTTATATCCGTGCTT+TGG | + | chr8.1:31243940-31243959 | MS.gene76469:intron | 35.0% | |
| GGATAAGAGCTTTGCTTTAT+GGG | + | chr8.1:31243381-31243400 | MS.gene76469:CDS | 35.0% | |
| GTGTTTACTTGCATGTCTTA+GGG | + | chr8.1:31242797-31242816 | MS.gene76469:intron | 35.0% | |
| TAAACCAGAAGGAGTTCAAA+GGG | + | chr8.1:31242293-31242312 | MS.gene76469:intron | 35.0% | |
| TCCTGATTCAGAAATATGCA+GGG | + | chr8.1:31243051-31243070 | MS.gene76469:CDS | 35.0% | |
| TGATAGACGACAAGTTCAAT+TGG | + | chr8.1:31241567-31241586 | MS.gene76469:CDS | 35.0% | |
| TGGCTGGTAAATGTATACAA+AGG | + | chr8.1:31241385-31241404 | MS.gene76469:CDS | 35.0% | |
| TGTGAAAACTTAACACGAGA+GGG | - | chr8.1:31242479-31242498 | None:intergenic | 35.0% | |
| TGTGTTTACTTGCATGTCTT+AGG | + | chr8.1:31242796-31242815 | MS.gene76469:intron | 35.0% | |
| TGTTTACTTGCATGTCTTAG+GGG | + | chr8.1:31242798-31242817 | MS.gene76469:intron | 35.0% | |
| TTCCTGATTCAGAAATATGC+AGG | + | chr8.1:31243050-31243069 | MS.gene76469:CDS | 35.0% | |
| TTCTGTAAATTGACAGGGTA+AGG | - | chr8.1:31241519-31241538 | None:intergenic | 35.0% | |
| ! | ATTTATCTTTTCGTGGCTGT+TGG | + | chr8.1:31243977-31243996 | MS.gene76469:CDS | 35.0% |
| ! | GATTTTTCTCTCAGCTTCTT+AGG | + | chr8.1:31243913-31243932 | MS.gene76469:intron | 35.0% |
| ! | GTATAGGAGTATGGGAAATT+AGG | + | chr8.1:31241969-31241988 | MS.gene76469:intron | 35.0% |
| ! | GTTAGTTAGGATTTGGTTAG+TGG | + | chr8.1:31242013-31242032 | MS.gene76469:intron | 35.0% |
| ! | TAAACGACTTGGAATAAGCA+AGG | + | chr8.1:31242992-31243011 | MS.gene76469:CDS | 35.0% |
| ! | TCACTGGCATTTTTGTTACT+TGG | + | chr8.1:31243257-31243276 | MS.gene76469:CDS | 35.0% |
| ! | TTTATCTTTTCGTGGCTGTT+GGG | + | chr8.1:31243978-31243997 | MS.gene76469:CDS | 35.0% |
| !! | AACTGGTTCTGTAAATTGAC+AGG | - | chr8.1:31241525-31241544 | None:intergenic | 35.0% |
| !! | ACTGGTTCTGTAAATTGACA+GGG | - | chr8.1:31241524-31241543 | None:intergenic | 35.0% |
| !! | TCTTACTCATTTGGTTTGCT+AGG | + | chr8.1:31241842-31241861 | MS.gene76469:intron | 35.0% |
| !! | TTGGAGCATTTATCTTTTCG+TGG | + | chr8.1:31243970-31243989 | MS.gene76469:CDS | 35.0% |
| !!! | CTATTTTAGTTCAGCTTCTC+AGG | - | chr8.1:31241903-31241922 | None:intergenic | 35.0% |
| AAAATGACATGACCCGAACA+CGG | - | chr8.1:31241362-31241381 | None:intergenic | 40.0% | |
| AACAGCTGCATTTGTAGCAA+AGG | - | chr8.1:31242943-31242962 | None:intergenic | 40.0% | |
| AACCAAATGAGTAAGACCAC+AGG | - | chr8.1:31241838-31241857 | None:intergenic | 40.0% | |
| AAGAAGGGAAACAGTCATTG+TGG | - | chr8.1:31242437-31242456 | None:intergenic | 40.0% | |
| CCTCCCATTCCTATAATCAA+GGG | + | chr8.1:31244026-31244045 | MS.gene76469:CDS | 40.0% | |
| CTAAACCAGAAGGAGTTCAA+AGG | + | chr8.1:31242292-31242311 | MS.gene76469:intron | 40.0% | |
| GACTTGTAATGCATCTCTTG+GGG | - | chr8.1:31242257-31242276 | None:intergenic | 40.0% | |
| GATATTGCAACCTGAAGTGT+TGG | - | chr8.1:31243317-31243336 | None:intergenic | 40.0% | |
| GGACTTGTAATGCATCTCTT+GGG | - | chr8.1:31242258-31242277 | None:intergenic | 40.0% | |
| GGATCGCTCACATTAATTCT+TGG | - | chr8.1:31242969-31242988 | None:intergenic | 40.0% | |
| GGTCCCTTGATTATAGGAAT+GGG | - | chr8.1:31244032-31244051 | None:intergenic | 40.0% | |
| GTCTAGCAGACAATATCATC+AGG | - | chr8.1:31243463-31243482 | None:intergenic | 40.0% | |
| TAGACTTCCTGTGCACAATA+AGG | - | chr8.1:31242081-31242100 | None:intergenic | 40.0% | |
| TCCTATAATCAAGGGACCAA+GGG | + | chr8.1:31244034-31244053 | MS.gene76469:CDS | 40.0% | |
| TCCTCCCATTCCTATAATCA+AGG | + | chr8.1:31244025-31244044 | MS.gene76469:CDS | 40.0% | |
| TGGTCCCTTGATTATAGGAA+TGG | - | chr8.1:31244033-31244052 | None:intergenic | 40.0% | |
| TTCAACTAAACCAGAGGGTT+GGG | - | chr8.1:31242766-31242785 | None:intergenic | 40.0% | |
| TTCCTATAATCAAGGGACCA+AGG | + | chr8.1:31244033-31244052 | MS.gene76469:CDS | 40.0% | |
| TTTCAACTAAACCAGAGGGT+TGG | - | chr8.1:31242767-31242786 | None:intergenic | 40.0% | |
| ! | ATGATTGTATCTGGGTTGAG+TGG | + | chr8.1:31241288-31241307 | MS.gene76469:CDS | 40.0% |
| ! | GTTAGGATTTGGTTAGTGGT+TGG | + | chr8.1:31242017-31242036 | MS.gene76469:intron | 40.0% |
| ! | TTCCTGTGGTCTTACTCATT+TGG | + | chr8.1:31241833-31241852 | MS.gene76469:intron | 40.0% |
| ! | TTTTCCCTTTGAACTCCTTC+TGG | - | chr8.1:31242300-31242319 | None:intergenic | 40.0% |
| ! | TTTTTCTTGACATGTGGGGT+GGG | + | chr8.1:31242345-31242364 | MS.gene76469:intron | 40.0% |
| !! | ATGGATGTTTGGTTCTCTTG+TGG | + | chr8.1:31241792-31241811 | MS.gene76469:intron | 40.0% |
| !! | CAATTGGTCAGAAGTGCTAT+GGG | + | chr8.1:31241583-31241602 | MS.gene76469:CDS | 40.0% |
| !! | TCAATTGGTCAGAAGTGCTA+TGG | + | chr8.1:31241582-31241601 | MS.gene76469:CDS | 40.0% |
| AGATGCATTACAAGTCCGAG+AGG | + | chr8.1:31242261-31242280 | MS.gene76469:intron | 45.0% | |
| AGCGATCCGTATAAACGACT+TGG | + | chr8.1:31242981-31243000 | MS.gene76469:CDS | 45.0% | |
| AGTGCTATGGGTGCTTCATT+TGG | + | chr8.1:31241595-31241614 | MS.gene76469:CDS | 45.0% | |
| CCCTTGATTATAGGAATGGG+AGG | - | chr8.1:31244029-31244048 | None:intergenic | 45.0% | |
| CGGACTTGTAATGCATCTCT+TGG | - | chr8.1:31242259-31242278 | None:intergenic | 45.0% | |
| GATGCATTACAAGTCCGAGA+GGG | + | chr8.1:31242262-31242281 | MS.gene76469:intron | 45.0% | |
| TATATGATCGGCTGAAGAGC+AGG | + | chr8.1:31243360-31243379 | MS.gene76469:CDS | 45.0% | |
| TATGGGTGACAGACAGATGT+TGG | + | chr8.1:31242399-31242418 | MS.gene76469:intron | 45.0% | |
| TTCCTCGGTTGGAAAGAGAA+CGG | - | chr8.1:31243291-31243310 | None:intergenic | 45.0% | |
| TTCTCTTTCCAACCGAGGAA+GGG | + | chr8.1:31243291-31243310 | MS.gene76469:CDS | 45.0% | |
| ! | CAATCAATCCCGATTCGTTC+AGG | + | chr8.1:31243184-31243203 | MS.gene76469:CDS | 45.0% |
| ! | CTTTTTCTTGACATGTGGGG+TGG | + | chr8.1:31242344-31242363 | MS.gene76469:intron | 45.0% |
| ! | GCCCTGCATATTTCTGAATC+AGG | - | chr8.1:31243055-31243074 | None:intergenic | 45.0% |
| ! | TATATCCGTGCTTTGGTGCA+GGG | + | chr8.1:31243947-31243966 | MS.gene76469:intron | 45.0% |
| ! | TTATATCCGTGCTTTGGTGC+AGG | + | chr8.1:31243946-31243965 | MS.gene76469:intron | 45.0% |
| ! | TTTTCTTGACATGTGGGGTG+GGG | + | chr8.1:31242346-31242365 | MS.gene76469:intron | 45.0% |
| !!! | GTCATGTCATTTTCTGTGGC+TGG | + | chr8.1:31241369-31241388 | MS.gene76469:CDS | 45.0% |
| !!! | TCGGGTCATGTCATTTTCTG+TGG | + | chr8.1:31241365-31241384 | MS.gene76469:CDS | 45.0% |
| !!! | TAAAAATGATTTTTTTTTAA+TGG | + | chr8.1:31243739-31243758 | MS.gene76469:intron | 5.0% |
| AACAAGAGGGTCTCTGCCTA+AGG | - | chr8.1:31242525-31242544 | None:intergenic | 50.0% | |
| ACAAGAGGGTCTCTGCCTAA+GGG | - | chr8.1:31242524-31242543 | None:intergenic | 50.0% | |
| AGGCAACGAGGAGGTAATTG+GGG | - | chr8.1:31241330-31241349 | None:intergenic | 50.0% | |
| CATTACAAGTCCGAGAGGGT+AGG | + | chr8.1:31242266-31242285 | MS.gene76469:intron | 50.0% | |
| CTCTGACAGCCTGAACGAAT+CGG | - | chr8.1:31243196-31243215 | None:intergenic | 50.0% | |
| GAGGCAACGAGGAGGTAATT+GGG | - | chr8.1:31241331-31241350 | None:intergenic | 50.0% | |
| GCCCTTGGTCCCTTGATTAT+AGG | - | chr8.1:31244038-31244057 | None:intergenic | 50.0% | |
| GCTGTTGGGAACCTTCTTGA+TGG | + | chr8.1:31243992-31244011 | MS.gene76469:CDS | 50.0% | |
| GTGATCACCTCAAATGCCCT+TGG | - | chr8.1:31244053-31244072 | None:intergenic | 50.0% | |
| GTTCTCTTTCCAACCGAGGA+AGG | + | chr8.1:31243290-31243309 | MS.gene76469:CDS | 50.0% | |
| TCTGACAGCCTGAACGAATC+GGG | - | chr8.1:31243195-31243214 | None:intergenic | 50.0% | |
| TGACTTTCTTCCCCACCCTT+AGG | + | chr8.1:31242506-31242525 | MS.gene76469:intron | 50.0% | |
| TGGGCATACCTTTCCACACT+GGG | - | chr8.1:31241420-31241439 | None:intergenic | 50.0% | |
| TTCCCTTCTTCCCTACCCTT+GGG | + | chr8.1:31242447-31242466 | MS.gene76469:intron | 50.0% | |
| TTGGGCATACCTTTCCACAC+TGG | - | chr8.1:31241421-31241440 | None:intergenic | 50.0% | |
| TTTCCCTTCTTCCCTACCCT+TGG | + | chr8.1:31242446-31242465 | MS.gene76469:intron | 50.0% | |
| TTTCTTGACATGTGGGGTGG+GGG | + | chr8.1:31242347-31242366 | MS.gene76469:intron | 50.0% | |
| ! | GAACAAGGGCCCGTTTGTTT+TGG | - | chr8.1:31243848-31243867 | None:intergenic | 50.0% |
| AAGGACAGCGTTTCCCAGTG+TGG | + | chr8.1:31241404-31241423 | MS.gene76469:CDS | 55.0% | |
| AGGGTTGGGAGTGGCACAAA+TGG | - | chr8.1:31242752-31242771 | None:intergenic | 55.0% | |
| CAGCGTTTCCCAGTGTGGAA+AGG | + | chr8.1:31241409-31241428 | MS.gene76469:CDS | 55.0% | |
| CGAGGCAACGAGGAGGTAAT+TGG | - | chr8.1:31241332-31241351 | None:intergenic | 55.0% | |
| CGATTCGTTCAGGCTGTCAG+AGG | + | chr8.1:31243194-31243213 | MS.gene76469:CDS | 55.0% | |
| CTAAACCAGAGGGTTGGGAG+TGG | - | chr8.1:31242761-31242780 | None:intergenic | 55.0% | |
| GACCGTTCTCTTTCCAACCG+AGG | + | chr8.1:31243286-31243305 | MS.gene76469:CDS | 55.0% | |
| GGCAACGAGGAGGTAATTGG+GGG | - | chr8.1:31241329-31241348 | None:intergenic | 55.0% | |
| GGGTAGGTGGCTAAACCAGA+AGG | + | chr8.1:31242282-31242301 | MS.gene76469:intron | 55.0% | |
| GGTTTAGCCACCTACCCTCT+CGG | - | chr8.1:31242279-31242298 | None:intergenic | 55.0% | |
| TACAAGTCCGAGAGGGTAGG+TGG | + | chr8.1:31242269-31242288 | MS.gene76469:intron | 55.0% | |
| TCCAACCCTGCACCAAAGCA+CGG | - | chr8.1:31243955-31243974 | None:intergenic | 55.0% | |
| TGCCCAAGGGTAGGGAAGAA+GGG | - | chr8.1:31242452-31242471 | None:intergenic | 55.0% | |
| TTCTTGACATGTGGGGTGGG+GGG | + | chr8.1:31242348-31242367 | MS.gene76469:intron | 55.0% | |
| !! | CAAGGGACCAAGGGCATTTG+AGG | + | chr8.1:31244043-31244062 | MS.gene76469:CDS | 55.0% |
| !! | CTGAAGTGTTGGCCCTTCCT+CGG | - | chr8.1:31243306-31243325 | None:intergenic | 55.0% |
| ACGAGAGGGTCTCTGCCCAA+GGG | - | chr8.1:31242465-31242484 | None:intergenic | 60.0% | |
| AGAGGGTCTCTGCCTAAGGG+TGG | - | chr8.1:31242521-31242540 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCCAAGGGTA+GGG | - | chr8.1:31242460-31242479 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCTAAGGGTG+GGG | - | chr8.1:31242519-31242538 | None:intergenic | 60.0% | |
| CCTCGAATCACGCCGTGTTC+GGG | + | chr8.1:31241347-31241366 | MS.gene76469:CDS | 60.0% | |
| CGAGGAAGGGCCAACACTTC+AGG | + | chr8.1:31243304-31243323 | MS.gene76469:CDS | 60.0% | |
| CGTGATTCGAGGCAACGAGG+AGG | - | chr8.1:31241339-31241358 | None:intergenic | 60.0% | |
| CTGCCCAAGGGTAGGGAAGA+AGG | - | chr8.1:31242453-31242472 | None:intergenic | 60.0% | |
| GAGGGTCTCTGCCTAAGGGT+GGG | - | chr8.1:31242520-31242539 | None:intergenic | 60.0% | |
| GCCTCGAATCACGCCGTGTT+CGG | + | chr8.1:31241346-31241365 | MS.gene76469:CDS | 60.0% | |
| ! | TCCGTGCTTTGGTGCAGGGT+TGG | + | chr8.1:31243951-31243970 | MS.gene76469:intron | 60.0% |
| ! | TTGTGCCACTCCCAACCCTC+TGG | + | chr8.1:31242753-31242772 | MS.gene76469:intron | 60.0% |
| !! | AGTGTTGGCCCTTCCTCGGT+TGG | - | chr8.1:31243302-31243321 | None:intergenic | 60.0% |
| CACGAGAGGGTCTCTGCCCA+AGG | - | chr8.1:31242466-31242485 | None:intergenic | 65.0% | |
| CCCGAACACGGCGTGATTCG+AGG | - | chr8.1:31241350-31241369 | None:intergenic | 65.0% | |
| CGGCGTGATTCGAGGCAACG+AGG | - | chr8.1:31241342-31241361 | None:intergenic | 65.0% | |
| GAGGGTCTCTGCCCAAGGGT+AGG | - | chr8.1:31242461-31242480 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31241288 | 31244124 | 31241288 | ID=MS.gene76469 |
| chr8.1 | mRNA | 31241288 | 31244124 | 31241288 | ID=MS.gene76469.t1;Parent=MS.gene76469 |
| chr8.1 | exon | 31241288 | 31241430 | 31241288 | ID=MS.gene76469.t1.exon1;Parent=MS.gene76469.t1 |
| chr8.1 | CDS | 31241288 | 31241430 | 31241288 | ID=cds.MS.gene76469.t1;Parent=MS.gene76469.t1 |
| chr8.1 | exon | 31241537 | 31241640 | 31241537 | ID=MS.gene76469.t1.exon2;Parent=MS.gene76469.t1 |
| chr8.1 | CDS | 31241537 | 31241640 | 31241537 | ID=cds.MS.gene76469.t1;Parent=MS.gene76469.t1 |
| chr8.1 | exon | 31242958 | 31243402 | 31242958 | ID=MS.gene76469.t1.exon3;Parent=MS.gene76469.t1 |
| chr8.1 | CDS | 31242958 | 31243402 | 31242958 | ID=cds.MS.gene76469.t1;Parent=MS.gene76469.t1 |
| chr8.1 | exon | 31243968 | 31244124 | 31243968 | ID=MS.gene76469.t1.exon4;Parent=MS.gene76469.t1 |
| chr8.1 | CDS | 31243968 | 31244124 | 31243968 | ID=cds.MS.gene76469.t1;Parent=MS.gene76469.t1 |
| Gene Sequence |
| Protein sequence |
