Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76601.t1 | XP_003613819.1 | 98 | 501 | 10 | 0 | 1 | 501 | 42 | 542 | 3.50E-284 | 986.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76601.t1 | Q9S746 | 43.5 | 542 | 227 | 13 | 12 | 490 | 62 | 587 | 2.7e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76601.t1 | G7KGL1 | 98.0 | 501 | 10 | 0 | 1 | 501 | 42 | 542 | 2.5e-284 | 986.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene76601 | 0.868892 | 4.66E-66 | -1.69E-46 |
| MS.gene051648 | MS.gene76601 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene76601 | 0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene76601 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene76601 | 0.815938 | 7.15E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene76601 | 0.825212 | 5.30E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene76601 | 0.824645 | 7.22E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene76601 | 0.819067 | 1.41E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene76601 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene76601 | 0.823998 | 1.02E-53 | -1.69E-46 |
| MS.gene059424 | MS.gene76601 | 0.806836 | 6.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76601.t1 | MTR_5g041340 | 98.004 | 501 | 10 | 0 | 1 | 501 | 42 | 542 | 0.0 | 1011 |
| MS.gene76601.t1 | MTR_5g011010 | 43.534 | 549 | 230 | 11 | 13 | 497 | 48 | 580 | 2.19e-143 | 424 |
| MS.gene76601.t1 | MTR_5g011020 | 43.613 | 548 | 227 | 14 | 13 | 495 | 13 | 543 | 2.68e-139 | 412 |
| MS.gene76601.t1 | MTR_2g100070 | 41.774 | 541 | 236 | 12 | 13 | 490 | 63 | 587 | 1.73e-129 | 389 |
| MS.gene76601.t1 | MTR_8g016320 | 41.805 | 543 | 237 | 11 | 11 | 490 | 53 | 579 | 1.57e-128 | 386 |
| MS.gene76601.t1 | MTR_1g101770 | 39.927 | 546 | 248 | 9 | 12 | 493 | 45 | 574 | 1.89e-127 | 383 |
| MS.gene76601.t1 | MTR_4g005860 | 43.702 | 524 | 233 | 13 | 13 | 491 | 54 | 560 | 1.02e-125 | 378 |
| MS.gene76601.t1 | MTR_1g101760 | 41.497 | 294 | 114 | 6 | 12 | 305 | 45 | 280 | 1.09e-60 | 206 |
| MS.gene76601.t1 | MTR_5g024110 | 43.750 | 64 | 35 | 1 | 147 | 209 | 17 | 80 | 1.11e-13 | 68.6 |
| MS.gene76601.t1 | MTR_5g041300 | 75.676 | 37 | 9 | 0 | 417 | 453 | 138 | 174 | 2.59e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76601.t1 | AT1G14190 | 60.606 | 495 | 185 | 4 | 1 | 495 | 25 | 509 | 0.0 | 625 |
| MS.gene76601.t1 | AT1G14190 | 60.606 | 495 | 185 | 4 | 1 | 495 | 4 | 488 | 0.0 | 625 |
| MS.gene76601.t1 | AT1G14185 | 61.429 | 490 | 178 | 4 | 1 | 490 | 25 | 503 | 0.0 | 621 |
| MS.gene76601.t1 | AT1G72970 | 43.670 | 545 | 222 | 14 | 12 | 490 | 62 | 587 | 3.36e-134 | 401 |
| MS.gene76601.t1 | AT5G51950 | 42.962 | 547 | 227 | 11 | 13 | 491 | 13 | 542 | 1.05e-133 | 398 |
| MS.gene76601.t1 | AT5G51950 | 42.962 | 547 | 227 | 11 | 13 | 491 | 46 | 575 | 6.02e-133 | 397 |
| MS.gene76601.t1 | AT5G51950 | 42.987 | 549 | 226 | 12 | 13 | 491 | 46 | 577 | 9.53e-133 | 397 |
| MS.gene76601.t1 | AT1G73050 | 44.510 | 510 | 238 | 12 | 13 | 490 | 54 | 550 | 6.00e-132 | 394 |
| MS.gene76601.t1 | AT3G56060 | 41.651 | 533 | 245 | 11 | 13 | 490 | 46 | 567 | 1.33e-131 | 394 |
| MS.gene76601.t1 | AT1G72970 | 44.190 | 525 | 221 | 12 | 12 | 490 | 62 | 560 | 2.05e-130 | 390 |
| MS.gene76601.t1 | AT1G12570 | 41.728 | 544 | 236 | 13 | 13 | 493 | 46 | 571 | 5.41e-130 | 389 |
| MS.gene76601.t1 | AT5G51930 | 41.544 | 544 | 240 | 11 | 12 | 495 | 25 | 550 | 7.97e-120 | 363 |
| MS.gene76601.t1 | AT5G51930 | 41.588 | 529 | 231 | 11 | 12 | 480 | 72 | 582 | 5.18e-114 | 349 |
Find 105 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATAGTTTGGAGCATATC+AGG | 0.227435 | 5.1:-31165216 | MS.gene76601:CDS |
| ATCAGGGGAACCAAGATTTC+TGG | 0.241263 | 5.1:-31165199 | MS.gene76601:CDS |
| ACAAGAACTGTGAGGTTCTT+TGG | 0.244938 | 5.1:+31165115 | None:intergenic |
| CTTGATTCATTGATGCTTAG+TGG | 0.272621 | 5.1:+31164006 | None:intergenic |
| CAGATTCTGTTTCCCTTTGT+TGG | 0.284554 | 5.1:+31163545 | None:intergenic |
| CTACAAAGTTCATGGTATAA+AGG | 0.291989 | 5.1:-31163668 | MS.gene76601:CDS |
| GCCCTACAATGGTTATAGTT+TGG | 0.297158 | 5.1:-31165227 | MS.gene76601:CDS |
| TCATGGTATAAAGGGATTAA+AGG | 0.306133 | 5.1:-31163659 | MS.gene76601:CDS |
| GGGAGTGTGTTTGATGGATT+TGG | 0.306485 | 5.1:-31165178 | MS.gene76601:CDS |
| CCCCTTGAAGTTGAATGGTT+TGG | 0.336997 | 5.1:+31164282 | None:intergenic |
| GGTGGCTCATCAGCTATAAA+TGG | 0.349307 | 5.1:-31165418 | MS.gene76601:CDS |
| GTAATTGATAGAAGATACTA+TGG | 0.351305 | 5.1:-31165535 | MS.gene76601:CDS |
| CATCACCCCTTGAAGTTGAA+TGG | 0.386140 | 5.1:+31164277 | None:intergenic |
| TACAAAGTTCATGGTATAAA+GGG | 0.389378 | 5.1:-31163667 | MS.gene76601:CDS |
| ATATTATCAGCAGGTGCATT+AGG | 0.405342 | 5.1:-31164252 | MS.gene76601:CDS |
| ACTAGTTCATGAAATGAAAC+AGG | 0.408524 | 5.1:-31164163 | MS.gene76601:CDS |
| GAAAGAGGTGGTTCACCATA+TGG | 0.411776 | 5.1:-31165568 | MS.gene76601:CDS |
| CTCCAAACTATAACCATTGT+AGG | 0.417066 | 5.1:+31165225 | None:intergenic |
| CCTGATCCACCACAAATTGC+AGG | 0.417262 | 5.1:-31164072 | MS.gene76601:CDS |
| GCACATGACTTCGGATGTTA+AGG | 0.420708 | 5.1:-31165692 | None:intergenic |
| TCATATGATTACATTATAGT+TGG | 0.421609 | 5.1:-31165655 | MS.gene76601:CDS |
| AATGTGAGAGGAAGAGTTCT+TGG | 0.424602 | 5.1:-31165439 | MS.gene76601:CDS |
| ATAGCAATGCCTCTTTCAAA+AGG | 0.425278 | 5.1:-31163964 | MS.gene76601:CDS |
| GATCATTGTTGCTCAGTTCA+AGG | 0.428453 | 5.1:+31163938 | None:intergenic |
| CACTAAGCATCAATGAATCA+AGG | 0.429122 | 5.1:-31164005 | MS.gene76601:CDS |
| TATAAAGGGATTAAAGGTAT+TGG | 0.432574 | 5.1:-31163653 | MS.gene76601:CDS |
| AAACACACTCCCAGAAATCT+TGG | 0.435114 | 5.1:+31165189 | None:intergenic |
| TTCACAGCAGGGTTAAGCCT+TGG | 0.437687 | 5.1:+31163916 | None:intergenic |
| ATTTCTGGGAGTGTGTTTGA+TGG | 0.444120 | 5.1:-31165184 | MS.gene76601:CDS |
| GTATCTTCTATCAATTACTA+AGG | 0.444205 | 5.1:+31165540 | None:intergenic |
| GAATTTAGTCTTCTCGAAAC+GGG | 0.449569 | 5.1:-31165256 | MS.gene76601:CDS |
| GATAAAGACTACAAAGTTCA+TGG | 0.455678 | 5.1:-31163676 | MS.gene76601:CDS |
| ATTACTAAGGGATTTCCATA+TGG | 0.457033 | 5.1:+31165553 | None:intergenic |
| TCTGTTATGCCTGCAATTTG+TGG | 0.462136 | 5.1:+31164063 | None:intergenic |
| GATGAATTTGTTGATAAAGT+TGG | 0.462185 | 5.1:-31165373 | MS.gene76601:CDS |
| AACCAAACCATTCAACTTCA+AGG | 0.464351 | 5.1:-31164284 | MS.gene76601:CDS |
| TCAGGGGAACCAAGATTTCT+GGG | 0.466094 | 5.1:-31165198 | MS.gene76601:CDS |
| TGAGTCACAGCAAAGCAAAT+TGG | 0.470372 | 5.1:-31163791 | MS.gene76601:CDS |
| CCTGCAATTTGTGGTGGATC+AGG | 0.472565 | 5.1:+31164072 | None:intergenic |
| ATGGTTTGGTTTCTTGATGT+AGG | 0.472808 | 5.1:+31164296 | None:intergenic |
| GTTGGAGAATCTTGATACCT+TGG | 0.474801 | 5.1:+31163563 | None:intergenic |
| TGAATTTAGTCTTCTCGAAA+CGG | 0.479430 | 5.1:-31165257 | MS.gene76601:CDS |
| ATTTGTTGATAAAGTTGGTT+GGG | 0.480078 | 5.1:-31165368 | MS.gene76601:CDS |
| TTGTTAAAGAAGCTTATGAA+TGG | 0.481724 | 5.1:-31165336 | MS.gene76601:CDS |
| CTTGATGAACTTGATACCCT+TGG | 0.485528 | 5.1:+31164350 | None:intergenic |
| TCAGCTGATCTTCTTGAGGC+TGG | 0.493708 | 5.1:-31165142 | MS.gene76601:CDS |
| TCGGATGTTAAGGAAGTAGC+AGG | 0.494503 | 5.1:-31165682 | MS.gene76601:CDS |
| CAAAGATTCACTTCAGAAGA+TGG | 0.495094 | 5.1:-31165469 | MS.gene76601:CDS |
| TATGATTACATTATAGTTGG+AGG | 0.498016 | 5.1:-31165652 | MS.gene76601:CDS |
| AGATAGTTGAATTTCACAGC+AGG | 0.506395 | 5.1:+31163904 | None:intergenic |
| TGTTAAAGAAGCTTATGAAT+GGG | 0.509588 | 5.1:-31165335 | MS.gene76601:CDS |
| GTATCAAGATTCTCCAACAA+AGG | 0.511803 | 5.1:-31163558 | MS.gene76601:CDS |
| AGAACTATCTATCACTATCA+TGG | 0.512229 | 5.1:-31163724 | MS.gene76601:CDS |
| TGTTTCATTTCATGAACTAG+TGG | 0.512739 | 5.1:+31164165 | None:intergenic |
| TATCAAGATTCTCCAACAAA+GGG | 0.517558 | 5.1:-31163557 | MS.gene76601:CDS |
| GTCACCAGGTACTAATCCTA+TGG | 0.519218 | 5.1:-31163611 | MS.gene76601:CDS |
| ATCAAGTTCATCAAGAGTAA+TGG | 0.523595 | 5.1:-31164342 | MS.gene76601:CDS |
| AATTTGTTGATAAAGTTGGT+TGG | 0.526334 | 5.1:-31165369 | MS.gene76601:CDS |
| TCTGATAGAGTAGCTGCTAA+AGG | 0.528626 | 5.1:+31165613 | None:intergenic |
| AGCATCATCTTTCATTACAA+TGG | 0.542353 | 5.1:-31165076 | MS.gene76601:intron |
| GATAGTTGAATTTCACAGCA+GGG | 0.544877 | 5.1:+31163905 | None:intergenic |
| TATCATGGTGGTTGCAGTGT+TGG | 0.545850 | 5.1:-31163709 | MS.gene76601:CDS |
| TGCTTTGCTGTGACTCACCA+AGG | 0.547039 | 5.1:+31163797 | None:intergenic |
| TTATTGTCTTTCTGAATCAG+TGG | 0.548927 | 5.1:+31165508 | None:intergenic |
| ACCAAACCATTCAACTTCAA+GGG | 0.551680 | 5.1:-31164283 | MS.gene76601:CDS |
| TAGCAATGCCTCTTTCAAAA+GGG | 0.552326 | 5.1:-31163963 | MS.gene76601:CDS |
| GTTATGCCTGCAATTTGTGG+TGG | 0.556647 | 5.1:+31164066 | None:intergenic |
| CAAGAATGAAACAAGGGCCA+AGG | 0.557798 | 5.1:-31164367 | MS.gene76601:CDS |
| TTATAGTTTGGAGCATATCA+GGG | 0.558056 | 5.1:-31165215 | MS.gene76601:CDS |
| GATGGTGTTAGCAATGTGAG+AGG | 0.558102 | 5.1:-31165451 | MS.gene76601:CDS |
| TATCTTCTATCAATTACTAA+GGG | 0.565588 | 5.1:+31165541 | None:intergenic |
| GGTGATGTCATATTATCAGC+AGG | 0.568505 | 5.1:-31164261 | MS.gene76601:CDS |
| GAAATGAAACAGGTTGGTCA+AGG | 0.573424 | 5.1:-31164153 | MS.gene76601:CDS |
| TCAACTAAGATTGCTATGCA+AGG | 0.575435 | 5.1:+31164117 | None:intergenic |
| TCCAAACTATAACCATTGTA+GGG | 0.585018 | 5.1:+31165226 | None:intergenic |
| AACTGAGCAACAATGATCCA+AGG | 0.586972 | 5.1:-31163933 | MS.gene76601:CDS |
| AATTACTCAATAAAATTGCA+AGG | 0.588567 | 5.1:-31163840 | MS.gene76601:CDS |
| GATTACATTATAGTTGGAGG+AGG | 0.589082 | 5.1:-31165649 | MS.gene76601:CDS |
| ACTAAGCATCAATGAATCAA+GGG | 0.592050 | 5.1:-31164004 | MS.gene76601:CDS |
| GTTCATGAAATGAAACAGGT+TGG | 0.592262 | 5.1:-31164159 | MS.gene76601:CDS |
| TAAAGAAGCTTATGAATGGG+TGG | 0.595958 | 5.1:-31165332 | MS.gene76601:CDS |
| CAACTAAGATTGCTATGCAA+GGG | 0.598474 | 5.1:+31164118 | None:intergenic |
| GAGACAATGGCACATGACTT+CGG | 0.599235 | 5.1:-31165701 | None:intergenic |
| AAGGGATTAAAGGTATTGGA+TGG | 0.603189 | 5.1:-31163649 | MS.gene76601:CDS |
| GGCTCATCAGCTATAAATGG+TGG | 0.608408 | 5.1:-31165415 | MS.gene76601:CDS |
| AAGAATGAAACAAGGGCCAA+GGG | 0.609525 | 5.1:-31164366 | MS.gene76601:CDS |
| TCTGTGCTACTAATAGAAAG+AGG | 0.610524 | 5.1:-31165583 | MS.gene76601:CDS |
| GTGAGAGGAAGAGTTCTTGG+TGG | 0.618458 | 5.1:-31165436 | MS.gene76601:CDS |
| TGGTTGCAGTGTTGGAACAG+TGG | 0.618519 | 5.1:-31163701 | MS.gene76601:CDS |
| CAGGTGACAAGAATGAAACA+AGG | 0.619494 | 5.1:-31164374 | MS.gene76601:CDS |
| TACCTCAGCTGATCTTCTTG+AGG | 0.626186 | 5.1:-31165146 | MS.gene76601:CDS |
| CCAAACCATTCAACTTCAAG+GGG | 0.628346 | 5.1:-31164282 | MS.gene76601:CDS |
| ATAGTTGGAGGAGGTACATG+TGG | 0.636326 | 5.1:-31165640 | MS.gene76601:CDS |
| AGCATCAAAAGTGTAGCCAT+AGG | 0.642151 | 5.1:+31163595 | None:intergenic |
| TATAGTTTGGAGCATATCAG+GGG | 0.653579 | 5.1:-31165214 | MS.gene76601:CDS |
| GTGCTACTAATAGAAAGAGG+TGG | 0.667477 | 5.1:-31165580 | MS.gene76601:CDS |
| AGCCTCAAGAAGATCAGCTG+AGG | 0.672209 | 5.1:+31165144 | None:intergenic |
| AATTCAGCAACAGATTGCCA+TGG | 0.672603 | 5.1:+31165274 | None:intergenic |
| CGGATGTTAAGGAAGTAGCA+GGG | 0.691890 | 5.1:-31165681 | MS.gene76601:CDS |
| GTAGCCATAGGATTAGTACC+TGG | 0.693537 | 5.1:+31163607 | None:intergenic |
| AGGTGACAAGAATGAAACAA+GGG | 0.696456 | 5.1:-31164373 | MS.gene76601:CDS |
| TTGATGCTAGGAAGGTACCA+AGG | 0.703387 | 5.1:-31163580 | MS.gene76601:CDS |
| ACTATCTATCACTATCATGG+TGG | 0.706690 | 5.1:-31163721 | MS.gene76601:CDS |
| AAAGATGATGCTCTTCACTG+TGG | 0.719776 | 5.1:+31165087 | None:intergenic |
| TGGCATTTACAAGAACTGTG+AGG | 0.760804 | 5.1:+31165107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAAATAAAGATATTTC+TGG | - | chr5.1:31164159-31164178 | MS.gene76601:CDS | 15.0% |
| !!! | AATTTTTTCAATTGTTCTTT+TGG | + | chr5.1:31165015-31165034 | None:intergenic | 15.0% |
| !! | AAATTTATGTAATAAGTGCA+AGG | - | chr5.1:31164182-31164201 | MS.gene76601:CDS | 20.0% |
| !! | AAGTTGAAGATTTCAAAAAA+CGG | - | chr5.1:31164623-31164642 | MS.gene76601:intron | 20.0% |
| !! | AATTACTCAATAAAATTGCA+AGG | - | chr5.1:31165367-31165386 | MS.gene76601:CDS | 20.0% |
| !! | TATCTTCTATCAATTACTAA+GGG | + | chr5.1:31163669-31163688 | None:intergenic | 20.0% |
| !! | TCATATGATTACATTATAGT+TGG | - | chr5.1:31163552-31163571 | MS.gene76601:CDS | 20.0% |
| !!! | TTTTTATTGCTACTTATTCT+AGG | + | chr5.1:31164767-31164786 | None:intergenic | 20.0% |
| ! | AAAAATCATCGTCACAAAAT+AGG | + | chr5.1:31164216-31164235 | None:intergenic | 25.0% |
| ! | AAAATCATCGTCACAAAATA+GGG | + | chr5.1:31164215-31164234 | None:intergenic | 25.0% |
| ! | ATCATCTTCCACAATTTAAA+GGG | - | chr5.1:31164337-31164356 | MS.gene76601:CDS | 25.0% |
| ! | GCAATTGCAATACAATTAAA+TGG | + | chr5.1:31164691-31164710 | None:intergenic | 25.0% |
| ! | GTAATTGATAGAAGATACTA+TGG | - | chr5.1:31163672-31163691 | MS.gene76601:CDS | 25.0% |
| ! | GTATCTTCTATCAATTACTA+AGG | + | chr5.1:31163670-31163689 | None:intergenic | 25.0% |
| ! | TACAAAGTTCATGGTATAAA+GGG | - | chr5.1:31165540-31165559 | MS.gene76601:CDS | 25.0% |
| ! | TAGTTGCAATGTTCAAATTA+CGG | + | chr5.1:31164602-31164621 | None:intergenic | 25.0% |
| ! | TATGATTACATTATAGTTGG+AGG | - | chr5.1:31163555-31163574 | MS.gene76601:CDS | 25.0% |
| ! | TGTTAAAGAAGCTTATGAAT+GGG | - | chr5.1:31163872-31163891 | MS.gene76601:CDS | 25.0% |
| ! | TTGTTAAAGAAGCTTATGAA+TGG | - | chr5.1:31163871-31163890 | MS.gene76601:CDS | 25.0% |
| !! | ATTTGTTGATAAAGTTGGTT+GGG | - | chr5.1:31163839-31163858 | MS.gene76601:CDS | 25.0% |
| !! | TATAAAGGGATTAAAGGTAT+TGG | - | chr5.1:31165554-31165573 | MS.gene76601:CDS | 25.0% |
| !! | TTTTCTTGCAAAACTTTCTA+AGG | + | chr5.1:31165458-31165477 | None:intergenic | 25.0% |
| !!! | AATTTGTTGATAAAGTTGGT+TGG | - | chr5.1:31163838-31163857 | MS.gene76601:CDS | 25.0% |
| !!! | ATGATTTTTTTATGTCTCTG+TGG | - | chr5.1:31164227-31164246 | MS.gene76601:CDS | 25.0% |
| !!! | GATGAATTTGTTGATAAAGT+TGG | - | chr5.1:31163834-31163853 | MS.gene76601:CDS | 25.0% |
| AAATGCAATTTCAGATATCC+CGG | - | chr5.1:31164445-31164464 | MS.gene76601:intron | 30.0% | |
| AAGATTTCAAAAAACGGTCT+AGG | - | chr5.1:31164629-31164648 | MS.gene76601:intron | 30.0% | |
| AAGGAAAAATGCAATAGACT+TGG | + | chr5.1:31165394-31165413 | None:intergenic | 30.0% | |
| ACTAAGCATCAATGAATCAA+GGG | - | chr5.1:31165203-31165222 | MS.gene76601:CDS | 30.0% | |
| ACTAGTTCATGAAATGAAAC+AGG | - | chr5.1:31165044-31165063 | MS.gene76601:intron | 30.0% | |
| AGAACTATCTATCACTATCA+TGG | - | chr5.1:31165483-31165502 | MS.gene76601:CDS | 30.0% | |
| AGCATCATCTTTCATTACAA+TGG | - | chr5.1:31164131-31164150 | MS.gene76601:CDS | 30.0% | |
| ATCAAGTTCATCAAGAGTAA+TGG | - | chr5.1:31164865-31164884 | MS.gene76601:intron | 30.0% | |
| ATTACTAAGGGATTTCCATA+TGG | + | chr5.1:31163657-31163676 | None:intergenic | 30.0% | |
| ATTCATCTTCCATAGTTTCA+AGG | - | chr5.1:31164273-31164292 | MS.gene76601:CDS | 30.0% | |
| CATCATCTTCCACAATTTAA+AGG | - | chr5.1:31164336-31164355 | MS.gene76601:CDS | 30.0% | |
| CTACAAAGTTCATGGTATAA+AGG | - | chr5.1:31165539-31165558 | MS.gene76601:CDS | 30.0% | |
| GATAAAGACTACAAAGTTCA+TGG | - | chr5.1:31165531-31165550 | MS.gene76601:CDS | 30.0% | |
| TATCAAGATTCTCCAACAAA+GGG | - | chr5.1:31165650-31165669 | MS.gene76601:CDS | 30.0% | |
| TCATGGTATAAAGGGATTAA+AGG | - | chr5.1:31165548-31165567 | MS.gene76601:CDS | 30.0% | |
| TCCAAACTATAACCATTGTA+GGG | + | chr5.1:31163984-31164003 | None:intergenic | 30.0% | |
| TGTTTCATTTCATGAACTAG+TGG | + | chr5.1:31165045-31165064 | None:intergenic | 30.0% | |
| TTATTGTCTTTCTGAATCAG+TGG | + | chr5.1:31163702-31163721 | None:intergenic | 30.0% | |
| ! | AAGTCTATTGCATTTTTCCT+TGG | - | chr5.1:31165393-31165412 | MS.gene76601:CDS | 30.0% |
| ! | ATCTGAAATTGCATTTGCAA+CGG | + | chr5.1:31164441-31164460 | None:intergenic | 30.0% |
| ! | CAATTTTACTTGTGATGCAA+GGG | - | chr5.1:31164413-31164432 | MS.gene76601:intron | 30.0% |
| ! | TGAATTTAGTCTTCTCGAAA+CGG | - | chr5.1:31163950-31163969 | MS.gene76601:CDS | 30.0% |
| ! | TTATAGTTTGGAGCATATCA+GGG | - | chr5.1:31163992-31164011 | MS.gene76601:CDS | 30.0% |
| AACCAAACCATTCAACTTCA+AGG | - | chr5.1:31164923-31164942 | MS.gene76601:intron | 35.0% | |
| AAGATTGTTGAAGTTGTGCA+AGG | + | chr5.1:31164511-31164530 | None:intergenic | 35.0% | |
| ACCAAACCATTCAACTTCAA+GGG | - | chr5.1:31164924-31164943 | MS.gene76601:intron | 35.0% | |
| ACTATCTATCACTATCATGG+TGG | - | chr5.1:31165486-31165505 | MS.gene76601:CDS | 35.0% | |
| AGATAGTTGAATTTCACAGC+AGG | + | chr5.1:31165306-31165325 | None:intergenic | 35.0% | |
| AGGTGACAAGAATGAAACAA+GGG | - | chr5.1:31164834-31164853 | MS.gene76601:intron | 35.0% | |
| AGTCATGATATCTCCTAATG+TGG | + | chr5.1:31164722-31164741 | None:intergenic | 35.0% | |
| ATAGCAATGCCTCTTTCAAA+AGG | - | chr5.1:31165243-31165262 | MS.gene76601:CDS | 35.0% | |
| ATATTATCAGCAGGTGCATT+AGG | - | chr5.1:31164955-31164974 | MS.gene76601:intron | 35.0% | |
| CAAAGATTCACTTCAGAAGA+TGG | - | chr5.1:31163738-31163757 | MS.gene76601:CDS | 35.0% | |
| CAACTAAGATTGCTATGCAA+GGG | + | chr5.1:31165092-31165111 | None:intergenic | 35.0% | |
| CAAGGTGAATGCCATAATTA+TGG | + | chr5.1:31164493-31164512 | None:intergenic | 35.0% | |
| CACTAAGCATCAATGAATCA+AGG | - | chr5.1:31165202-31165221 | MS.gene76601:CDS | 35.0% | |
| CTCCAAACTATAACCATTGT+AGG | + | chr5.1:31163985-31164004 | None:intergenic | 35.0% | |
| CTTGATTCATTGATGCTTAG+TGG | + | chr5.1:31165204-31165223 | None:intergenic | 35.0% | |
| GACAGGAACATCTAATTGTA+TGG | + | chr5.1:31164564-31164583 | None:intergenic | 35.0% | |
| GATAGTTGAATTTCACAGCA+GGG | + | chr5.1:31165305-31165324 | None:intergenic | 35.0% | |
| GATTACATTATAGTTGGAGG+AGG | - | chr5.1:31163558-31163577 | MS.gene76601:CDS | 35.0% | |
| GTATCAAGATTCTCCAACAA+AGG | - | chr5.1:31165649-31165668 | MS.gene76601:CDS | 35.0% | |
| GTTCATGAAATGAAACAGGT+TGG | - | chr5.1:31165048-31165067 | MS.gene76601:intron | 35.0% | |
| TAAAGAAGCTTATGAATGGG+TGG | - | chr5.1:31163875-31163894 | MS.gene76601:CDS | 35.0% | |
| TAGCAATGCCTCTTTCAAAA+GGG | - | chr5.1:31165244-31165263 | MS.gene76601:CDS | 35.0% | |
| TAGCTGCAATGTTTAAACTG+CGG | + | chr5.1:31164385-31164404 | None:intergenic | 35.0% | |
| TCAACTAAGATTGCTATGCA+AGG | + | chr5.1:31165093-31165112 | None:intergenic | 35.0% | |
| TGCTATTGCAGCCATAATTA+TGG | - | chr5.1:31164479-31164498 | MS.gene76601:intron | 35.0% | |
| TTCTTGAAATTTGACCACTC+AGG | - | chr5.1:31164814-31164833 | MS.gene76601:intron | 35.0% | |
| TTGTATTGCAATTGCAATCG+TGG | - | chr5.1:31164696-31164715 | MS.gene76601:intron | 35.0% | |
| ! | GAATTTAGTCTTCTCGAAAC+GGG | - | chr5.1:31163951-31163970 | MS.gene76601:CDS | 35.0% |
| ! | GCAATTTTACTTGTGATGCA+AGG | - | chr5.1:31164412-31164431 | MS.gene76601:intron | 35.0% |
| ! | GTTATAGTTTGGAGCATATC+AGG | - | chr5.1:31163991-31164010 | MS.gene76601:CDS | 35.0% |
| ! | TATAGTTTGGAGCATATCAG+GGG | - | chr5.1:31163993-31164012 | MS.gene76601:CDS | 35.0% |
| ! | TCTCAACTTTTGCTTCTAAG+TGG | - | chr5.1:31164982-31165001 | MS.gene76601:intron | 35.0% |
| ! | TCTGAAATTGCATTTGCAAC+GGG | + | chr5.1:31164440-31164459 | None:intergenic | 35.0% |
| ! | TCTGTGCTACTAATAGAAAG+AGG | - | chr5.1:31163624-31163643 | MS.gene76601:CDS | 35.0% |
| !! | AAGGGATTAAAGGTATTGGA+TGG | - | chr5.1:31165558-31165577 | MS.gene76601:CDS | 35.0% |
| !! | ATGGTTTGGTTTCTTGATGT+AGG | + | chr5.1:31164914-31164933 | None:intergenic | 35.0% |
| AAACACACTCCCAGAAATCT+TGG | + | chr5.1:31164021-31164040 | None:intergenic | 40.0% | |
| AAAGATGATGCTCTTCACTG+TGG | + | chr5.1:31164123-31164142 | None:intergenic | 40.0% | |
| AACTGAGCAACAATGATCCA+AGG | - | chr5.1:31165274-31165293 | MS.gene76601:CDS | 40.0% | |
| AAGAATGAAACAAGGGCCAA+GGG | - | chr5.1:31164841-31164860 | MS.gene76601:intron | 40.0% | |
| AATGTGAGAGGAAGAGTTCT+TGG | - | chr5.1:31163768-31163787 | MS.gene76601:CDS | 40.0% | |
| AATTCAGCAACAGATTGCCA+TGG | + | chr5.1:31163936-31163955 | None:intergenic | 40.0% | |
| ACAAGAACTGTGAGGTTCTT+TGG | + | chr5.1:31164095-31164114 | None:intergenic | 40.0% | |
| CAGATTCTGTTTCCCTTTGT+TGG | + | chr5.1:31165665-31165684 | None:intergenic | 40.0% | |
| CAGGTGACAAGAATGAAACA+AGG | - | chr5.1:31164833-31164852 | MS.gene76601:intron | 40.0% | |
| CCAAACCATTCAACTTCAAG+GGG | - | chr5.1:31164925-31164944 | MS.gene76601:intron | 40.0% | |
| CGACATGATCCTTGAAACTA+TGG | + | chr5.1:31164285-31164304 | None:intergenic | 40.0% | |
| CTTGATGAACTTGATACCCT+TGG | + | chr5.1:31164860-31164879 | None:intergenic | 40.0% | |
| GATCATTGTTGCTCAGTTCA+AGG | + | chr5.1:31165272-31165291 | None:intergenic | 40.0% | |
| GCCCTACAATGGTTATAGTT+TGG | - | chr5.1:31163980-31163999 | MS.gene76601:CDS | 40.0% | |
| GGAAGATGAATGCCACAATA+TGG | + | chr5.1:31164264-31164283 | None:intergenic | 40.0% | |
| GGTGATGTCATATTATCAGC+AGG | - | chr5.1:31164946-31164965 | MS.gene76601:intron | 40.0% | |
| GTTGGAGAATCTTGATACCT+TGG | + | chr5.1:31165647-31165666 | None:intergenic | 40.0% | |
| TCTGATAGAGTAGCTGCTAA+AGG | + | chr5.1:31163597-31163616 | None:intergenic | 40.0% | |
| TCTGTTATGCCTGCAATTTG+TGG | + | chr5.1:31165147-31165166 | None:intergenic | 40.0% | |
| TGAATGCCACAATATGGTTG+CGG | + | chr5.1:31164258-31164277 | None:intergenic | 40.0% | |
| TGACAGGACCCTTTAAATTG+TGG | + | chr5.1:31164348-31164367 | None:intergenic | 40.0% | |
| TGAGTCACAGCAAAGCAAAT+TGG | - | chr5.1:31165416-31165435 | MS.gene76601:CDS | 40.0% | |
| TGCCATGGTGTGAGAAAAAA+GGG | + | chr5.1:31163921-31163940 | None:intergenic | 40.0% | |
| TGGCATTTACAAGAACTGTG+AGG | + | chr5.1:31164103-31164122 | None:intergenic | 40.0% | |
| TTGCCATGGTGTGAGAAAAA+AGG | + | chr5.1:31163922-31163941 | None:intergenic | 40.0% | |
| TTTCATTCTTGTCACCTGAG+TGG | + | chr5.1:31164831-31164850 | None:intergenic | 40.0% | |
| ! | AGCATCAAAAGTGTAGCCAT+AGG | + | chr5.1:31165615-31165634 | None:intergenic | 40.0% |
| ! | ATGGCTACACTTTTGATGCT+AGG | - | chr5.1:31165615-31165634 | MS.gene76601:CDS | 40.0% |
| ! | ATTTCTGGGAGTGTGTTTGA+TGG | - | chr5.1:31164023-31164042 | MS.gene76601:CDS | 40.0% |
| ! | CTACACTTTTGATGCTAGGA+AGG | - | chr5.1:31165619-31165638 | MS.gene76601:CDS | 40.0% |
| ! | CTTTTGCTTCTAAGTGGCAT+TGG | - | chr5.1:31164988-31165007 | MS.gene76601:intron | 40.0% |
| ! | GGATCAGGAAGTCTATTTTC+TGG | + | chr5.1:31165123-31165142 | None:intergenic | 40.0% |
| ! | GTGCTACTAATAGAAAGAGG+TGG | - | chr5.1:31163627-31163646 | MS.gene76601:CDS | 40.0% |
| !! | GAAATGAAACAGGTTGGTCA+AGG | - | chr5.1:31165054-31165073 | MS.gene76601:intron | 40.0% |
| !! | TCAACTTTTTCTGAGTCACC+AGG | - | chr5.1:31165582-31165601 | MS.gene76601:CDS | 40.0% |
| !! | TCAAGGTACCCTTTTGAAAG+AGG | + | chr5.1:31165255-31165274 | None:intergenic | 40.0% |
| AATAGCATTGCATTCACGCC+GGG | + | chr5.1:31164466-31164485 | None:intergenic | 45.0% | |
| ATCAGGGGAACCAAGATTTC+TGG | - | chr5.1:31164008-31164027 | MS.gene76601:CDS | 45.0% | |
| ATTGCAATCGTGGCCACATT+AGG | - | chr5.1:31164706-31164725 | MS.gene76601:intron | 45.0% | |
| CAAGAATGAAACAAGGGCCA+AGG | - | chr5.1:31164840-31164859 | MS.gene76601:intron | 45.0% | |
| CAATAGCATTGCATTCACGC+CGG | + | chr5.1:31164467-31164486 | None:intergenic | 45.0% | |
| CATCACCCCTTGAAGTTGAA+TGG | + | chr5.1:31164933-31164952 | None:intergenic | 45.0% | |
| CATGGTGTGAGAAAAAAGGG+AGG | + | chr5.1:31163918-31163937 | None:intergenic | 45.0% | |
| CCCCTTGAAGTTGAATGGTT+TGG | + | chr5.1:31164928-31164947 | None:intergenic | 45.0% | |
| CGGATGTTAAGGAAGTAGCA+GGG | - | chr5.1:31163526-31163545 | MS.gene76601:CDS | 45.0% | |
| GAAAGAGGTGGTTCACCATA+TGG | - | chr5.1:31163639-31163658 | MS.gene76601:CDS | 45.0% | |
| GGCTCATCAGCTATAAATGG+TGG | - | chr5.1:31163792-31163811 | MS.gene76601:CDS | 45.0% | |
| GGTGGCTCATCAGCTATAAA+TGG | - | chr5.1:31163789-31163808 | MS.gene76601:CDS | 45.0% | |
| GTCACCAGGTACTAATCCTA+TGG | - | chr5.1:31165596-31165615 | MS.gene76601:CDS | 45.0% | |
| GTTATGCCTGCAATTTGTGG+TGG | + | chr5.1:31165144-31165163 | None:intergenic | 45.0% | |
| TACCTCAGCTGATCTTCTTG+AGG | - | chr5.1:31164061-31164080 | MS.gene76601:CDS | 45.0% | |
| TATCATGGTGGTTGCAGTGT+TGG | - | chr5.1:31165498-31165517 | MS.gene76601:CDS | 45.0% | |
| TCAGGGGAACCAAGATTTCT+GGG | - | chr5.1:31164009-31164028 | MS.gene76601:CDS | 45.0% | |
| TCGGATGTTAAGGAAGTAGC+AGG | - | chr5.1:31163525-31163544 | MS.gene76601:CDS | 45.0% | |
| TGGAAGATGATGCGACAATC+AGG | + | chr5.1:31164328-31164347 | None:intergenic | 45.0% | |
| ! | ACGGGAATTTTGCCCTACAA+TGG | - | chr5.1:31163969-31163988 | MS.gene76601:CDS | 45.0% |
| ! | ATAGTTGGAGGAGGTACATG+TGG | - | chr5.1:31163567-31163586 | MS.gene76601:CDS | 45.0% |
| ! | GATGGTGTTAGCAATGTGAG+AGG | - | chr5.1:31163756-31163775 | MS.gene76601:CDS | 45.0% |
| ! | GTAGCCATAGGATTAGTACC+TGG | + | chr5.1:31165603-31165622 | None:intergenic | 45.0% |
| !! | GGGAGTGTGTTTGATGGATT+TGG | - | chr5.1:31164029-31164048 | MS.gene76601:CDS | 45.0% |
| !! | TTGATGCTAGGAAGGTACCA+AGG | - | chr5.1:31165627-31165646 | MS.gene76601:CDS | 45.0% |
| !!! | CTCCCTTTTTTCTCACACCA+TGG | - | chr5.1:31163916-31163935 | MS.gene76601:CDS | 45.0% |
| AGCCTCAAGAAGATCAGCTG+AGG | + | chr5.1:31164066-31164085 | None:intergenic | 50.0% | |
| CCTGATCCACCACAAATTGC+AGG | - | chr5.1:31165135-31165154 | MS.gene76601:CDS | 50.0% | |
| GTGAGAGGAAGAGTTCTTGG+TGG | - | chr5.1:31163771-31163790 | MS.gene76601:CDS | 50.0% | |
| TCAGCTGATCTTCTTGAGGC+TGG | - | chr5.1:31164065-31164084 | MS.gene76601:CDS | 50.0% | |
| TTCACAGCAGGGTTAAGCCT+TGG | + | chr5.1:31165294-31165313 | None:intergenic | 50.0% | |
| ! | TGCTTTGCTGTGACTCACCA+AGG | + | chr5.1:31165413-31165432 | None:intergenic | 50.0% |
| ! | TGGTTGCAGTGTTGGAACAG+TGG | - | chr5.1:31165506-31165525 | MS.gene76601:CDS | 50.0% |
| !! | CCTGCAATTTGTGGTGGATC+AGG | + | chr5.1:31165138-31165157 | None:intergenic | 50.0% |
| AGGGTCCTGTCACAATTGCG+AGG | - | chr5.1:31164356-31164375 | MS.gene76601:CDS | 55.0% | |
| GCTGCACCGCAACCATATTG+TGG | - | chr5.1:31164249-31164268 | MS.gene76601:CDS | 55.0% | |
| GGCTGCATTGCACATGTGAC+AGG | + | chr5.1:31164581-31164600 | None:intergenic | 55.0% | |
| GTCCTGTCACAATTGCGAGG+TGG | - | chr5.1:31164359-31164378 | MS.gene76601:CDS | 55.0% | |
| GGCCACCTCGCAATTGTGAC+AGG | + | chr5.1:31164364-31164383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 31163519 | 31165710 | 31163519 | ID=MS.gene76601 |
| chr5.1 | mRNA | 31163519 | 31165710 | 31163519 | ID=MS.gene76601.t1;Parent=MS.gene76601 |
| chr5.1 | exon | 31165077 | 31165710 | 31165077 | ID=MS.gene76601.t1.exon1;Parent=MS.gene76601.t1 |
| chr5.1 | CDS | 31165077 | 31165710 | 31165077 | ID=cds.MS.gene76601.t1;Parent=MS.gene76601.t1 |
| chr5.1 | exon | 31163519 | 31164393 | 31163519 | ID=MS.gene76601.t1.exon2;Parent=MS.gene76601.t1 |
| chr5.1 | CDS | 31163519 | 31164393 | 31163519 | ID=cds.MS.gene76601.t1;Parent=MS.gene76601.t1 |
| Gene Sequence |
| Protein sequence |
